ECOD: domain e5vvrD1

Domain ID e5vvrD1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RNA_pol_Rpb4

UID:	002137636
Type:	Automatic domain
Parent:	e1go3F1
Range:	D:4-71,D:131-221
PDB:	5vvr
PDB Description:	DNA-directed RNA polymerase II subunit RPB4
UniProt:	P20433
Hsap BLAST neighbor:	O15514
Species:

Domains in the same chain:

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e5vvrD1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e5vvrA6	A:8-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e5vvrA4	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e5vvrA1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e5vvrA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e5vvrA5	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e5vvrA2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e5vvrA7	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e5vvrA8	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5vvrA3	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e5vvrB7	B:18-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB4	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB1	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e5vvrB3	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e5vvrB6	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e5vvrB5	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e5vvrB2	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e5vvrC1	C:1-41,C:173-270	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5vvrC2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e5vvrD1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e5vvrE2	E:1-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e5vvrE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e5vvrF1	F:75-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e5vvrG1	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e5vvrG2	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5vvrH1	H:1-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e5vvrI1	I:1-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5vvrI2	I:50-122	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5vvrJ1	J:1-70	HTH	RPB10	RPB10
e5vvrK1	K:1-111	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e5vvrL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e5vvrM2	M:229-388,M:442-578	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5vvrM1	M:579-797	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases