ECOD: domain e6a5lC1

Domain ID e6a5lC1

A: a+b two layers
X: DCoH-like
H: RBP11-like subunits of RNA polymerase
T: RBP11-like subunits of RNA polymerase
F: RNA_pol_L

UID:	002393090
Type:	Automatic domain
Parent:	e1twfC1
Range:	C:4-40,C:173-266
PDB:	6a5l
PDB Description:	RNA polymerase II third largest subunit B44, part of central core
UniProt:	C4R7L2
Hsap BLAST neighbor:	P19387
Species:

Domains in the same chain:

Download Pymol

e6a5lC1	C:4-40,C:173-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6a5lC2	C:41-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit

Domains in the same PDB:

e6a5la1	a:38-134	Histone-like	Histone-related	Histone
e6a5lA9	A:2-337	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6a5lA2	A:338-375,A:437-520	cradle loop barrel	RIFT-related	double psi
e6a5lA4	A:376-436	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6a5lA5	A:521-663	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6a5lA3	A:664-872	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6a5lA6	A:873-1061	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6a5lA1	A:1062-1104,A:1304-1457	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6a5lA7	A:1105-1133,A:1245-1303	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5lA8	A:1134-1244	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5lb1	b:23-102	Histone-like	Histone-related	Histone
e6a5lB6	B:9-57,B:77-121,B:155-209,B:398-534	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB1	B:210-397	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB4	B:535-623	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6a5lB2	B:624-655,B:675-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB3	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e6a5lB5	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6a5lB7	B:1098-1222	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5lc1	c:16-118	Histone-like	Histone-related	Histone
e6a5lC1	C:4-40,C:173-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6a5lC2	C:41-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6a5ld1	d:28-122	Histone-like	Histone-related	Histone
e6a5lD1	D:3-185	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6a5le1	e:39-135	Histone-like	Histone-related	Histone
e6a5lE1	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6a5lE2	E:143-214	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6a5lf1	f:25-102	Histone-like	Histone-related	Histone
e6a5lF1	F:71-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6a5lg1	g:14-118	Histone-like	Histone-related	Histone
e6a5lG1	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6a5lG2	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6a5lh1	h:31-121	Histone-like	Histone-related	Histone
e6a5lH1	H:3-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6a5lI2	I:3-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6a5lI1	I:50-113	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6a5lJ1	J:1-66	HTH	RPB10	RPB10
e6a5lK1	K:1-113	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6a5lL1	L:28-72	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related