Domain ID e6a5lI2

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: RNA_POL_M_15KD
UID: 002393100
Type: Automatic domain
Parent: e1twfI1
Range: I:3-49
Ligands: ZN
PDB: 6a5l
PDB Description: DNA-directed RNA polymerase subunit
UniProt: F2QPE6
Hsap BLAST neighbor: P36954
Species:

Structure of domain e6a5lI2

Domains in the same chain:

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e6a5lI2 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6a5lI1 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e6a5la1 a:38-134 Histone-like Histone-related Histone
e6a5lA9 A:2-337 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6a5lA2 A:338-375,A:437-520 cradle loop barrel RIFT-related double psi
e6a5lA4 A:376-436 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6a5lA5 A:521-663 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6a5lA3 A:664-872 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6a5lA6 A:873-1061 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6a5lA1 A:1062-1104,A:1304-1457 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6a5lA7 A:1105-1133,A:1245-1303 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5lA8 A:1134-1244 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6a5lb1 b:23-102 Histone-like Histone-related Histone
e6a5lB6 B:9-57,B:77-121,B:155-209,B:398-534 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB1 B:210-397 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB4 B:535-623 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6a5lB2 B:624-655,B:675-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6a5lB3 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e6a5lB5 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6a5lB7 B:1098-1222 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6a5lc1 c:16-118 Histone-like Histone-related Histone
e6a5lC1 C:4-40,C:173-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6a5lC2 C:41-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6a5ld1 d:28-122 Histone-like Histone-related Histone
e6a5lD1 D:3-185 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6a5le1 e:39-135 Histone-like Histone-related Histone
e6a5lE1 E:2-142 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6a5lE2 E:143-214 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6a5lf1 f:25-102 Histone-like Histone-related Histone
e6a5lF1 F:71-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6a5lg1 g:14-118 Histone-like Histone-related Histone
e6a5lG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6a5lG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6a5lh1 h:31-121 Histone-like Histone-related Histone
e6a5lH1 H:3-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6a5lI2 I:3-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6a5lI1 I:50-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6a5lJ1 J:1-66 HTH RPB10 RPB10
e6a5lK1 K:1-113 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6a5lL1 L:28-72 Rubredoxin-like Rubredoxin-related Rubredoxin-related