ECOD: domain e6drdB5

Domain ID e6drdB5

A: a+b complex topology
X: inserted a+b domain in yeast RNA polymerase beta subunit
H: inserted a+b domain in yeast RNA polymerase beta subunit
T: inserted a+b domain in yeast RNA polymerase beta subunit
F: RNA_pol_Rpb2_4

UID:	002496785
Type:	Automatic domain
Parent:	e1twfB7
Range:	B:528-618
PDB:	6drd
PDB Description:	DNA-directed RNA polymerase II subunit RPB2
UniProt:	P30876
Hsap BLAST neighbor:	P30876
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e6drdB1	B:16-200,B:392-527	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6drdB2	B:199-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6drdB5	B:528-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6drdB3	B:618-767	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6drdB6	B:768-805,B:930-1059	cradle loop barrel	RIFT-related	double psi
e6drdB4	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

e6drdA5	A:364-533	cradle loop barrel	RIFT-related	double psi
e6drdA3	A:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6drdA1	A:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6drdA2	A:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6drdA6	A:1083-1135,A:1361-1415,A:1469-1484	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6drdA7	A:1136-1151,A:1309-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6drdA4	A:1152-1308	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6drdB1	B:16-200,B:392-527	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6drdB2	B:199-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6drdB5	B:528-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6drdB3	B:618-767	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6drdB6	B:768-805,B:930-1059	cradle loop barrel	RIFT-related	double psi
e6drdB4	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6drdC1	C:2-42,C:179-271	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6drdC2	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6drdD1	D:14-141	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6drdE2	E:6-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6drdE1	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6drdF1	F:51-126	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6drdG2	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6drdG1	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6drdH1	H:3-148	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6drdI2	I:12-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6drdI1	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6drdJ1	J:1-64	HTH	RPB10	RPB10
e6drdK1	K:2-112	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6drdL1	L:15-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related