Domain ID e6drdB6

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb2_6
UID: 002496786
Type: Automatic domain
Parent: e1twfB1
Range: B:768-805,B:930-1059
PDB: 6drd
PDB Description: DNA-directed RNA polymerase II subunit RPB2
UniProt: P30876
Hsap BLAST neighbor: P30876
Species: Homo sapiens

Structure of domain e6drdB6

Domains in the same chain:

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e6drdB1 B:16-200,B:392-527 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6drdB2 B:199-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6drdB5 B:528-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6drdB3 B:618-767 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6drdB6 B:768-805,B:930-1059 cradle loop barrel RIFT-related double psi
e6drdB4 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Domains in the same PDB:

e6drdA5 A:364-533 cradle loop barrel RIFT-related double psi
e6drdA3 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6drdA1 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6drdA2 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6drdA6 A:1083-1135,A:1361-1415,A:1469-1484 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6drdA7 A:1136-1151,A:1309-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6drdA4 A:1152-1308 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6drdB1 B:16-200,B:392-527 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6drdB2 B:199-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6drdB5 B:528-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6drdB3 B:618-767 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6drdB6 B:768-805,B:930-1059 cradle loop barrel RIFT-related double psi
e6drdB4 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6drdC1 C:2-42,C:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6drdC2 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6drdD1 D:14-141 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6drdE2 E:6-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6drdE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6drdF1 F:51-126 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6drdG2 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6drdG1 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6drdH1 H:3-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6drdI2 I:12-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6drdI1 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6drdJ1 J:1-64 HTH RPB10 RPB10
e6drdK1 K:2-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6drdL1 L:15-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related