Domain ID e6gmhA1

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  • A: a+b complex topology
  • X: N-terminal domain in RNA-polymerase beta-prime subunit
  • H: N-terminal domain in RNA-polymerase beta-prime subunit
  • T: N-terminal domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_1
UID: 002773498
Type: Automatic domain
Parent: e1twfA4
Range: A:11-152,A:182-350
Ligands: ZN
PDB: 6gmh
PDB Description: RPB1
Species:

Structure of domain e6gmhA1

Domains in the same chain:

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e6gmhA1 A:11-152,A:182-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gmhA3 A:345-388,A:450-535 cradle loop barrel RIFT-related double psi
e6gmhA6 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gmhA4 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gmhA2 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gmhA5 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gmhA9 A:1083-1134,A:1361-1484,A:1530-1543 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gmhA8 A:1135-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gmhA7 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6gmhA1 A:11-152,A:182-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gmhA3 A:345-388,A:450-535 cradle loop barrel RIFT-related double psi
e6gmhA6 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gmhA4 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gmhA2 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gmhA5 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gmhA9 A:1083-1134,A:1361-1484,A:1530-1543 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gmhA8 A:1135-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gmhA7 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gmhB4 B:16-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gmhB3 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gmhB1 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6gmhB7 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gmhB5 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e6gmhB2 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6gmhB6 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gmhC1 C:2-42,C:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gmhC2 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6gmhD1 D:14-139 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gmhE1 E:2-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6gmhE2 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6gmhF1 F:46-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6gmhG1 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6gmhG2 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gmhH1 H:2-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gmhI2 I:9-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gmhI1 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gmhJ1 J:1-67 HTH RPB10 RPB10
e6gmhK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gmhL1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gmhM5 M:284-404 HTH Tex N-terminal domain Tex N-terminal domain
e6gmhM7 M:405-421,M:442-470 immunoglobulin/albumin-binding domain-like Tex bundle domain-like Tex bundle domain-like
e6gmhM1 M:470-477,M:538-756 Tex N-terminal region-like Tex N-terminal region-like Tex N-terminal region-like
e6gmhM2 M:757-944 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6gmhM4 M:945-1039 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gmhM3 M:1048-1144 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gmhM6 M:1145-1176,M:1226-1287 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gmhM9 M:1327-1421 SH2 SH2 SH2
e6gmhM8 M:1422-1519 SH2 SH2 SH2
e6gmhW1 W:5-304 beta-propeller-like beta-propeller 7-bladed
e6gmhY1 Y:2-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gmhZ2 Z:176-268 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e6gmhZ1 Z:269-396 SH3 SH3 SH3
e6gmhZ4 Z:416-470 SH3 SH3 SH3
e6gmhZ3 Z:471-525 SH3 SH3 SH3
e6gmhZ7 Z:526-580 SH3 SH3 SH3
e6gmhZ5 Z:581-646 SH3 SH3 SH3
e6gmhZ6 Z:703-754 SH3 SH3 SH3