ECOD: domain e6gmlD1

Domain ID e6gmlD1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RNA_pol_Rpb4

UID:	002392146
Type:	Automatic domain
Parent:	e1go3F1
Range:	D:14-142
PDB:	6gml
PDB Description:	RNA polymerase II subunit D
UniProt:	A0A287ADR4
Hsap BLAST neighbor:	O15514
Species:	Sus scrofa

Domains in the same chain:

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e6gmlD1	D:14-142	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e6gmlA2	A:11-152,A:182-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6gmlA5	A:351-388,A:450-533	cradle loop barrel	RIFT-related	double psi
e6gmlA6	A:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gmlA7	A:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6gmlA1	A:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6gmlA4	A:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gmlA3	A:1083-1135,A:1361-1487	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6gmlA8	A:1136-1164,A:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gmlA9	A:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gmlB2	B:16-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gmlB6	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gmlB7	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6gmlB3	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gmlB4	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e6gmlB1	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6gmlB5	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gmlC1	C:2-42,C:179-271	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6gmlC2	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6gmlD1	D:14-142	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6gmlE1	E:2-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6gmlE2	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6gmlF1	F:46-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6gmlG1	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6gmlG2	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6gmlH1	H:2-149	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6gmlI2	I:9-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gmlI1	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gmlJ1	J:1-67	HTH	RPB10	RPB10
e6gmlK1	K:1-115	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6gmlL1	L:13-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gmlY1	Y:2-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gmlZ2	Z:176-268	Alpha-beta plaits	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain
e6gmlZ1	Z:269-396	SH3	SH3	SH3
e6gmlZ4	Z:416-470	SH3	SH3	SH3
e6gmlZ3	Z:471-527	SH3	SH3	SH3
e6gmlZ7	Z:528-580	SH3	SH3	SH3
e6gmlZ5	Z:581-646	SH3	SH3	SH3
e6gmlZ6	Z:703-753	SH3	SH3	SH3