Domain ID e6vyyAE2

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb1_2
UID: 002654681
Type: Automatic domain
Parent: e1twfA1
Range: AE:334-498
Ligands: MG
PDB: 6vyy
PDB Description: DNA-directed RNA polymerase subunit beta'
Species:

Structure of domain e6vyyAE2

Domains in the same chain:

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e6vyyAE2 AE:334-498 cradle loop barrel RIFT-related double psi
e6vyyAE8 AE:16-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6vyyAE7 AE:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6vyyAE9 AE:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6vyyAE5 AE:1132-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE4 AE:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6vyyAE6 AE:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE1 AE:1023-1131 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE3 AE:895-931,AE:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6vyy01 0:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e6vyy11 1:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e6vyy21 2:1-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e6vyy31 3:2-104 SH3 SH3 SH3
e6vyy41 4:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e6vyyAB1 AB:6-117 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e6vyyAC1 AC:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6vyyAC2 AC:6-52,AC:179-235 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6vyyAD2 AD:6-52,AD:174-233 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6vyyAD1 AD:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6vyyAE9 AE:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6vyyAE1 AE:1023-1131 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE5 AE:1132-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE8 AE:16-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6vyyAE7 AE:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6vyyAE2 AE:334-498 cradle loop barrel RIFT-related double psi
e6vyyAE4 AE:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6vyyAE6 AE:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6vyyAE3 AE:895-931,AE:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6vyyAF1 AF:2-84 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e6vyyb1 b:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e6vyyc1 c:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e6vyyC1 C:10-75 HTH HTH tri-helical
e6vyye1 e:2-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e6vyyE1 E:2-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e6vyyf1 f:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e6vyyF1 F:2-71 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e6vyyg1 g:1-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e6vyyG1 G:3-227 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e6vyyh2 h:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyyh1 h:126-272 SH3 SH3 SH3
e6vyyH3 H:3-89 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyyH1 H:87-176,H:264-266 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyyH2 H:267-348 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyyi1 i:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6vyyI1 I:2-107 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6vyyI2 I:108-209 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e6vyyj1 j:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e6vyyJ1 J:2-206 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e6vyyk1 k:4-55 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6vyyK2 K:10-78 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e6vyyK1 K:79-165 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6vyyl1 l:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e6vyyL1 L:1-104 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e6vyym1 m:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e6vyyM1 M:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e6vyyn1 n:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e6vyyN2 N:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e6vyyN1 N:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e6vyyo1 o:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e6vyyO1 O:4-130 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6vyyp2 p:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6vyyp1 p:83-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6vyyP1 P:5-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e6vyyq1 q:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e6vyyQ1 Q:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6vyyr1 r:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e6vyyr2 r:55-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e6vyyR1 R:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyys1 s:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e6vyyS1 S:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e6vyyt1 t:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e6vyyT1 T:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e6vyyu1 u:1-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e6vyyU1 U:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e6vyyv1 v:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e6vyyV1 V:4-83 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6vyyw1 w:1-119 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e6vyyW1 W:2-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e6vyyx1 x:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6vyyX1 X:2-117 HhH/H2TH H2TH H2TH
e6vyyy1 y:2-115 SH3 SH3 SH3
e6vyyz1 z:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20