ECOD: domain e6wmrZ1

Domain ID e6wmrZ1

A: alpha complex topology
X: Sigma2 domain-like
H: Sigma2 domain of RNA polymerase sigma factors
T: Sigma2 domain of RNA polymerase sigma factors
F: Sigma70_r2,Sigma70_ner

UID:	002715010
Type:	Automatic domain
Parent:	e1sigA1
Range:	Z:104-167,Z:193-412
PDB:	6wmr
PDB Description:	RNA polymerase sigma factor RpoD
Species:

Domains in the same chain:

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e6wmrZ1	Z:104-167,Z:193-412	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e6wmrZ3	Z:413-474	HTH	HTH	tri-helical
e6wmrZ2	Z:475-577	HTH	HTH	tri-helical

Domains in the same PDB:

e6wmrA2	A:8-53,A:172-230	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6wmrA1	A:54-171	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6wmrB2	B:3-50,B:171-232	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6wmrB1	B:51-170	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6wmrC2	C:1-156,C:455-580	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6wmrC5	C:157-214,C:345-454	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6wmrC1	C:581-716	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6wmrC3	C:717-792	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6wmrC7	C:793-830,C:1074-1249	cradle loop barrel	RIFT-related	double psi
e6wmrC6	C:831-977,C:1023-1073	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6wmrC4	C:1250-1356	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6wmrD6	D:12-331	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6wmrD8	D:332-375,D:416-496	cradle loop barrel	RIFT-related	double psi
e6wmrD1	D:376-415	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e6wmrD2	D:497-636	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6wmrD5	D:637-807	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6wmrD7	D:808-890	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6wmrD3	D:891-928,D:1124-1138,D:1204-1365	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6wmrD4	D:1139-1203	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6wmrE1	E:1-72	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e6wmrM2	M:1-77	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e6wmrM1	M:76-201	Repetitive alpha hairpins	Glutathione S-transferase (GST)-C	Glutathione S-transferase (GST)-C
e6wmrS1	S:2-78	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e6wmrS2	S:79-210	Repetitive alpha hairpins	Glutathione S-transferase (GST)-C	Glutathione S-transferase (GST)-C
e6wmrZ1	Z:104-167,Z:193-412	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e6wmrZ3	Z:413-474	HTH	HTH	tri-helical
e6wmrZ2	Z:475-577	HTH	HTH	tri-helical