ECOD: domain e6x7fAE6

Domain ID e6x7fAE6

A: a+b complex topology
X: central helical domain in RNA-polymerase beta-prime subunit
H: central helical domain in RNA-polymerase beta-prime subunit
T: central helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5

UID:	002657082
Type:	Automatic domain
Parent:	e5fj8A6
Range:	AE:895-931,AE:1214-1373
Ligands:	ZN
PDB:	6x7f
PDB Description:	DNA-directed RNA polymerase subunit beta'
Species:

Domains in the same chain:

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e6x7fAE7	AE:1023-1131	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAE2	AE:932-1022	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAE8	AE:16-341	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6x7fAE1	AE:499-638	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6x7fAE5	AE:811-894	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6x7fAE4	AE:639-810	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6x7fAE9	AE:1132-1215	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAE6	AE:895-931,AE:1214-1373	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6x7fAE3	AE:334-498	cradle loop barrel	RIFT-related	double psi

Domains in the same PDB:

e6x7f01	0:1-103	Ribosomal protein L21p	Ribosomal protein L21p	Ribosomal protein L21p
e6x7f11	1:1-110	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e6x7f21	2:1-94	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e6x7f31	3:2-104	SH3	SH3	SH3
e6x7f41	4:1-94	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e6x7f91	9:1-148	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e6x7fAA6	AA:713-790	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAA3	AA:828-938,AA:1045-1062	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAA7	AA:578-712	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6x7fAA1	AA:2-151,AA:452-577	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6x7fAA5	AA:235-288	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6x7fAA8	AA:152-225,AA:343-451	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6x7fAA4	AA:1240-1341	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6x7fAA9	AA:939-1044	Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit	Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit	Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e6x7fAA10	AA:226-234,AA:289-342	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6x7fAA2	AA:791-827,AA:1063-1239	cradle loop barrel	RIFT-related	double psi
e6x7fAB1	AB:123-180	SH3	SH3	SH3
e6x7fAB2	AB:6-46,AB:67-123	Alpha-beta plaits	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain
e6x7fAC3	AC:7-52,AC:179-236	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6x7fAC1	AC:237-329	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6x7fAC2	AC:53-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6x7fAD3	AD:53-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6x7fAD2	AD:237-329	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6x7fAD1	AD:5-52,AD:179-236	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6x7fAE7	AE:1023-1131	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAE4	AE:639-810	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6x7fAE6	AE:895-931,AE:1214-1373	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6x7fAE5	AE:811-894	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6x7fAE1	AE:499-638	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6x7fAE9	AE:1132-1215	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAE8	AE:16-341	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6x7fAE3	AE:334-498	cradle loop barrel	RIFT-related	double psi
e6x7fAE2	AE:932-1022	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6x7fAF1	AF:3-84	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e6x7fAG1	AG:423-495	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6x7fAG3	AG:345-422	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6x7fAG5	AG:126-199	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fAG4	AG:279-346	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e6x7fAG6	AG:199-278	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e6x7fAG2	AG:1-127	Transcription factor NusA, N-terminal domain	Transcription factor NusA, N-terminal domain	Transcription factor NusA, N-terminal domain
e6x7fb1	b:10-85	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e6x7fc1	c:2-78	Ribosomal protein bL28-related	Ribosomal protein bL28-related	Ribosomal protein L28
e6x7fC1	C:10-75	HTH	HTH	tri-helical
e6x7fe1	e:2-63	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e6x7fE1	E:2-87	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20
e6x7ff1	f:2-59	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e6x7fF1	F:2-71	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21
e6x7fg1	g:1-66	Ribosomal protein L31p	Ribosomal protein L31p	Ribosomal protein L31p
e6x7fG1	G:3-227	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e6x7fh1	h:2-125	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fh2	h:126-272	SH3	SH3	SH3
e6x7fH3	H:3-89	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fH1	H:87-176,H:264-266	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fH2	H:267-348	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fi1	i:2-57	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6x7fI1	I:2-107	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e6x7fI2	I:108-209	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e6x7fj1	j:1-209	cradle loop barrel	RIFT-related	Alanine racemase-C
e6x7fJ1	J:2-206	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e6x7fk1	k:4-55	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6x7fK1	K:10-78	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e6x7fK2	K:79-165	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e6x7fl1	l:1-201	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e6x7fL1	L:1-104	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e6x7fm1	m:1-46	50S ribosomal protein L34	50S ribosomal protein L34	50S ribosomal protein L34
e6x7fM1	M:2-152	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e6x7fn1	n:2-178	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e6x7fN1	N:2-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e6x7fN2	N:67-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e6x7fo1	o:2-65	Ribosomal protein L35p	Ribosomal protein L35p	Ribosomal protein L35p
e6x7fO1	O:4-130	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e6x7fp1	p:2-82	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e6x7fp2	p:83-176	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e6x7fP1	P:5-103	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e6x7fq1	q:1-38	Ribosomal protein L36	Ribosomal protein L36	Ribosomal protein L36
e6x7fQ1	Q:13-129	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6x7fr1	r:1-55	L9 N-domain-like	L9 N-domain-like	L9 N-domain-like
e6x7fr2	r:55-149	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain
e6x7fR1	R:2-124	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fs1	s:1-142	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e6x7fS1	S:2-101	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e6x7ft1	t:1-123	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e6x7fT1	T:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e6x7fu1	u:1-144	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e6x7fU1	U:1-82	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e6x7fv1	v:1-136	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e6x7fV1	V:4-83	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6x7fw1	w:1-119	Enolase-N/ribosomal protein	Prokaryotic ribosomal protein L17	Prokaryotic ribosomal protein L17
e6x7fW1	W:2-84	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e6x7fx1	x:2-117	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6x7fX1	X:2-117	HhH/H2TH	H2TH	H2TH
e6x7fy1	y:2-115	SH3	SH3	SH3
e6x7fY2	Y:1-71	Ribosomal protein L11/L12e N-terminal domain-like	Ribosomal protein L11/L12e N-terminal domain	Ribosomal protein L11/L12e N-terminal domain
e6x7fY1	Y:72-141	HTH	HTH	Ribosomal protein L11, C-terminal domain
e6x7fz1	z:2-118	PABP domain-like	Ribosomal protein L20	Ribosomal protein L20
e6x7fZ1	Z:1-30	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain