Domain ID e6xgfAE5

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  • A: a+b complex topology
  • X: first helical domain in RNA-polymerase beta-prime subunit
  • H: first helical domain in RNA-polymerase beta-prime subunit
  • T: first helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_3
UID: 002657765
Type: Automatic domain
Parent: e1twfA6
Range: AE:499-638
PDB: 6xgf
PDB Description: DNA-directed RNA polymerase subunit beta'
Species:

Structure of domain e6xgfAE5

Domains in the same chain:

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e6xgfAE4 AE:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6xgfAE5 AE:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6xgfAE6 AE:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE9 AE:1132-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE1 AE:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6xgfAE7 AE:334-498 cradle loop barrel RIFT-related double psi
e6xgfAE2 AE:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6xgfAE8 AE:1023-1131 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE3 AE:895-931,AE:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6xgf01 0:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e6xgf11 1:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e6xgf21 2:1-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e6xgf31 3:2-104 SH3 SH3 SH3
e6xgf41 4:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e6xgf91 9:1-148 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e6xgfAA5 AA:226-234,AA:289-342 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6xgfAA2 AA:578-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6xgfAA10 AA:791-827,AA:1063-1239 cradle loop barrel RIFT-related double psi
e6xgfAA7 AA:235-288 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6xgfAA1 AA:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAA6 AA:152-225,AA:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6xgfAA8 AA:2-151,AA:452-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6xgfAA3 AA:828-938,AA:1045-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAA4 AA:1240-1341 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6xgfAA9 AA:939-1044 Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e6xgfAB2 AB:6-46,AB:67-123 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e6xgfAB1 AB:123-180 SH3 SH3 SH3
e6xgfAC2 AC:7-52,AC:179-233 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6xgfAC1 AC:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6xgfAD2 AD:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6xgfAD1 AD:5-52,AD:179-232 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6xgfAE4 AE:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6xgfAE8 AE:1023-1131 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE1 AE:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6xgfAE3 AE:895-931,AE:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6xgfAE5 AE:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6xgfAE6 AE:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE9 AE:1132-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6xgfAE2 AE:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6xgfAE7 AE:334-498 cradle loop barrel RIFT-related double psi
e6xgfAF1 AF:3-84 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e6xgfb1 b:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e6xgfc1 c:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e6xgfC1 C:10-75 HTH HTH tri-helical
e6xgfe1 e:2-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e6xgfE1 E:2-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e6xgff1 f:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e6xgfF1 F:2-71 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e6xgfg1 g:1-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e6xgfG1 G:3-227 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e6xgfh2 h:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfh1 h:126-272 SH3 SH3 SH3
e6xgfH3 H:3-89 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfH1 H:87-176,H:264-266 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfH2 H:267-348 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfi1 i:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6xgfI2 I:2-107 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6xgfI1 I:108-209 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e6xgfj1 j:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e6xgfJ1 J:2-206 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e6xgfk1 k:4-55 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6xgfK2 K:10-78 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e6xgfK1 K:79-165 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6xgfl1 l:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e6xgfL1 L:1-104 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e6xgfm1 m:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e6xgfM1 M:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e6xgfn1 n:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e6xgfN1 N:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e6xgfN2 N:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e6xgfo1 o:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e6xgfO1 O:4-130 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6xgfp1 p:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6xgfp2 p:83-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6xgfP1 P:5-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e6xgfq1 q:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e6xgfQ1 Q:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6xgfr1 r:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e6xgfr2 r:55-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e6xgfR1 R:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfs1 s:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e6xgfS1 S:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e6xgft1 t:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e6xgfT1 T:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e6xgfu1 u:1-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e6xgfU1 U:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e6xgfv1 v:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e6xgfV1 V:4-83 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6xgfw1 w:1-119 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e6xgfW1 W:2-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e6xgfx1 x:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6xgfX1 X:2-117 HhH/H2TH H2TH H2TH
e6xgfy1 y:2-115 SH3 SH3 SH3
e6xgfY2 Y:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e6xgfY1 Y:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e6xgfz1 z:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e6xgfZ1 Z:1-30 Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain