Domain ID e6z9qV1

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  • A: a+b two layers
  • X: DCoH-like
  • H: RBP11-like subunits of RNA polymerase
  • T: RBP11-like subunits of RNA polymerase
  • F: RNA_pol_L
UID: 002675438
Type: Automatic domain
Parent: e1bdfA1
Range: V:5-52,V:179-236
PDB: 6z9q
PDB Description: DNA-directed RNA polymerase subunit alpha
Species:

Structure of domain e6z9qV1

Domains in the same chain:

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e6z9qV1 V:5-52,V:179-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6z9qV3 V:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6z9qV2 V:237-325 HhH/H2TH SAM/DNA-glycosylase SAM domain-like

Domains in the same PDB:

e6z9qa1 a:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qa3 a:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qa2 a:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qA2 A:1-127 Transcription factor NusA, N-terminal domain Transcription factor NusA, N-terminal domain Transcription factor NusA, N-terminal domain
e6z9qA4 A:126-199 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qA6 A:199-278 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6z9qA1 A:279-346 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6z9qA3 A:345-422 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6z9qA5 A:423-495 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6z9qb3 b:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qb1 b:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qb2 b:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qc1 c:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qc2 c:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qc3 c:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qd3 d:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qd1 d:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qd2 d:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qe2 e:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qe1 e:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qe3 e:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qf3 f:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e6z9qf1 f:48-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6z9qf2 f:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6z9qG1 G:6-117 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain
e6z9qU2 U:4-52,U:174-238 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6z9qU1 U:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6z9qV1 V:5-52,V:179-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6z9qV3 V:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6z9qV2 V:237-325 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6z9qW1 W:2-80 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e6z9qX2 X:2-151,X:452-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6z9qX5 X:152-225,X:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6z9qX1 X:226-234,X:289-342 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6z9qX8 X:235-288 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6z9qX9 X:578-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6z9qX7 X:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6z9qX6 X:791-827,X:1063-1239 cradle loop barrel RIFT-related double psi
e6z9qX4 X:828-938,X:1045-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6z9qX3 X:939-1044 Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e6z9qX10 X:1240-1341 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6z9qY3 Y:16-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6z9qY7 Y:334-498 cradle loop barrel RIFT-related double psi
e6z9qY6 Y:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6z9qY2 Y:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6z9qY8 Y:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6z9qY1 Y:895-931,Y:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6z9qY4 Y:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6z9qY9 Y:1023-1132 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6z9qY5 Y:1133-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif