Domain ID e6ztlCD3

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb1_2
UID: 002678285
Type: Automatic domain
Parent: e1twfA1
Range: CD:334-498
Ligands: MG PHE
PDB: 6ztl
PDB Description: DNA-directed RNA polymerase subunit beta'
Species:

Structure of domain e6ztlCD3

Domains in the same chain:

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e6ztlCD7 CD:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztlCD3 CD:334-498 cradle loop barrel RIFT-related double psi
e6ztlCD8 CD:895-931,CD:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6ztlCD6 CD:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6ztlCD1 CD:1023-1151 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD9 CD:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6ztlCD4 CD:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6ztlCD2 CD:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD5 CD:1152-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Domains in the same PDB:

e6ztlAB1 AB:2-227 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e6ztlAC1 AC:106-212 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e6ztlAC2 AC:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6ztlAD1 AD:2-206 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e6ztlAE2 AE:10-78 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e6ztlAE1 AE:79-165 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6ztlAF1 AF:1-104 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e6ztlAG1 AG:2-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e6ztlAH2 AH:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e6ztlAH1 AH:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e6ztlAI1 AI:3-130 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6ztlAJ1 AJ:2-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e6ztlAK1 AK:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6ztlAL1 AL:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztlAM1 AM:2-116 HhH/H2TH H2TH H2TH
e6ztlAN1 AN:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e6ztlAO1 AO:1-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e6ztlAP1 AP:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e6ztlAQ1 AQ:4-83 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztlAR1 AR:19-75 HTH HTH tri-helical
e6ztlAS1 AS:3-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e6ztlAT1 AT:2-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e6ztlAU1 AU:2-71 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e6ztlB11 B1:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e6ztlB21 B2:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ztlB31 B3:3-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ztlB41 B4:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e6ztlB51 B5:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e6ztlB61 B6:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e6ztlBC1 BC:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztlBC2 BC:126-273 SH3 SH3 SH3
e6ztlBD1 BD:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e6ztlBE1 BE:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e6ztlBF1 BF:2-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e6ztlBG2 BG:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6ztlBG1 BG:83-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6ztlBH1 BH:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e6ztlBH2 BH:56-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e6ztlBK1 BK:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e6ztlBL1 BL:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e6ztlBM1 BM:1-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e6ztlBN1 BN:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e6ztlBO1 BO:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e6ztlBP1 BP:1-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6ztlBQ1 BQ:2-115 SH3 SH3 SH3
e6ztlBR1 BR:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e6ztlBS1 BS:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e6ztlBT1 BT:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e6ztlBU1 BU:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e6ztlBV1 BV:2-103 SH3 SH3 SH3
e6ztlBW1 BW:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e6ztlBX1 BX:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e6ztlBY1 BY:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e6ztlBZ1 BZ:2-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e6ztlCA2 CA:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6ztlCA1 CA:6-52,CA:174-234 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ztlCB2 CB:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6ztlCB1 CB:4-52,CB:179-233 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ztlCC7 CC:1-151,CC:452-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ztlCC3 CC:791-827,CC:1063-1239 cradle loop barrel RIFT-related double psi
e6ztlCC1 CC:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCC6 CC:939-1044 Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e6ztlCC8 CC:226-234,CC:289-342 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztlCC4 CC:235-288 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztlCC5 CC:152-225,CC:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6ztlCC10 CC:578-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6ztlCC9 CC:1240-1342 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ztlCC2 CC:828-890,CC:913-938,CC:1045-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD9 CD:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6ztlCD1 CD:1023-1151 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD3 CD:334-498 cradle loop barrel RIFT-related double psi
e6ztlCD7 CD:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztlCD2 CD:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD5 CD:1152-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztlCD6 CD:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6ztlCD8 CD:895-931,CD:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6ztlCD4 CD:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6ztlCE1 CE:3-53 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e6ztlCF1 CF:6-117 Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain