Domain ID e6ztoCD9

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  • A: a+b complex topology
  • X: central helical domain in RNA-polymerase beta-prime subunit
  • H: central helical domain in RNA-polymerase beta-prime subunit
  • T: central helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_5
UID: 002678527
Type: Automatic domain
Parent: e5fj8A6
Range: CD:895-931,CD:1214-1373
Ligands: PHE ZN
PDB: 6zto
PDB Description: DNA-directed RNA polymerase subunit beta'
Species:

Structure of domain e6ztoCD9

Domains in the same chain:

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e6ztoCD2 CD:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6ztoCD5 CD:1023-1151 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD7 CD:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6ztoCD1 CD:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD3 CD:1152-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD4 CD:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztoCD6 CD:334-498 cradle loop barrel RIFT-related double psi
e6ztoCD9 CD:895-931,CD:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6ztoCD8 CD:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6ztoAB1 AB:2-227 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e6ztoAC2 AC:106-210 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e6ztoAC1 AC:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e6ztoAD1 AD:2-206 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e6ztoAE1 AE:79-165 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6ztoAE2 AE:10-78 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e6ztoAF1 AF:1-104 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e6ztoAG1 AG:2-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e6ztoAH2 AH:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e6ztoAH1 AH:2-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e6ztoAI1 AI:3-130 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e6ztoAJ1 AJ:4-103 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e6ztoAK1 AK:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6ztoAL1 AL:2-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztoAM1 AM:2-116 HhH/H2TH H2TH H2TH
e6ztoAN1 AN:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e6ztoAO1 AO:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e6ztoAP1 AP:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e6ztoAQ1 AQ:4-83 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztoAR1 AR:10-75 HTH HTH tri-helical
e6ztoAS1 AS:2-84 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e6ztoAT1 AT:2-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e6ztoAU1 AU:2-71 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e6ztoB11 B1:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e6ztoB21 B2:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ztoB31 B3:3-55 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6ztoB41 B4:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e6ztoB51 B5:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e6ztoB61 B6:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e6ztoB71 B7:1-70 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e6ztoBC1 BC:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6ztoBC2 BC:126-273 SH3 SH3 SH3
e6ztoBD1 BD:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e6ztoBE1 BE:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e6ztoBF1 BF:2-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e6ztoBG1 BG:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6ztoBG2 BG:83-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e6ztoBH2 BH:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e6ztoBH1 BH:56-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e6ztoBK1 BK:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e6ztoBL1 BL:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e6ztoBM1 BM:1-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e6ztoBN1 BN:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e6ztoBO1 BO:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e6ztoBP1 BP:1-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6ztoBQ1 BQ:2-115 SH3 SH3 SH3
e6ztoBR1 BR:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e6ztoBS1 BS:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e6ztoBT1 BT:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e6ztoBU1 BU:1-96 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e6ztoBV1 BV:2-104 SH3 SH3 SH3
e6ztoBW1 BW:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e6ztoBX1 BX:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e6ztoBY1 BY:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e6ztoBZ1 BZ:2-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e6ztoCA2 CA:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6ztoCA1 CA:6-52,CA:174-234 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ztoCB1 CB:4-52,CB:179-233 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6ztoCB2 CB:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6ztoCC2 CC:152-225,CC:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6ztoCC7 CC:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCC9 CC:1240-1342 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ztoCC8 CC:1-151,CC:452-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6ztoCC1 CC:791-827,CC:1063-1239 cradle loop barrel RIFT-related double psi
e6ztoCC10 CC:235-288 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztoCC4 CC:578-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6ztoCC6 CC:939-1044 Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e6ztoCC3 CC:828-890,CC:913-938,CC:1045-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCC5 CC:226-234,CC:289-342 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztoCD9 CD:895-931,CD:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6ztoCD4 CD:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6ztoCD3 CD:1152-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD6 CD:334-498 cradle loop barrel RIFT-related double psi
e6ztoCD1 CD:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD8 CD:15-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6ztoCD7 CD:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6ztoCD5 CD:1023-1151 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6ztoCD2 CD:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6ztoCE1 CE:3-63 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit