ECOD: domain e7egbo4

Domain ID e7egbo4

A: a+b two layers
X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_7

UID:	002729733
Type:	Automatic domain
Parent:	e1twfA3
Range:	o:1165-1297
PDB:	7egb
PDB Description:	DNA-directed RNA polymerase II subunit RPB1
Species:

Domains in the same chain:

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e7egbo5	o:11-155,o:181-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e7egbo9	o:351-388,o:450-533	cradle loop barrel	RIFT-related	double psi
e7egbo6	o:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7egbo3	o:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e7egbo1	o:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e7egbo2	o:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e7egbo7	o:1083-1135,o:1361-1487	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e7egbo8	o:1136-1164,o:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7egbo4	o:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e7egb22	2:51-238	HAD domain-like	HAD domain-related	vWA-like
e7egb21	2:239-316	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egb23	2:317-387	RING/U-box-like	RING/U-box-like	Cysteine-rich domain
e7egb31	3:8-72,3:95-264	HAD domain-like	HAD domain-related	vWA-like
e7egb32	3:265-292	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egb51	5:7-60	TFB5-related	TFB5-related	TFB5-related
e7egb71	7:1-243	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e7egb73	7:244-446	XPD arch domain	XPD arch domain	XPD arch domain
e7egb72	7:447-734	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e7egb81	8:13-310	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase
e7egb92	9:2-161	HTH	HTH	Cyclin-like
e7egb91	9:162-288	HTH	HTH	Cyclin-like
e7egbB2	B:19-254	Baculovirus p35 protein-related	Baculovirus p35 protein-related	Baculovirus p35 protein-related
e7egbB1	B:255-648	Zincin-like	Metalloproteases ("zincins") catalytic domain	Metalloproteases ("zincins") catalytic domain
e7egbB3	B:649-988	Repetitive alpha hairpins	ARM repeat	ARM repeat
e7egbe1	e:202-343,e:363-380	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like
e7egbe2	e:417-799	beta-propeller-like	beta-propeller	8-bladed
e7egbE1	E:209-378	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like	Taf5 N-terminal domain-like
e7egbE2	E:417-798	beta-propeller-like	beta-propeller	8-bladed
e7egbj1	j:114-218	Histone-like	Histone-related	Histone
e7egbJ1	J:114-217	Histone-like	Histone-related	Histone
e7egbk1	k:114-211	Histone-like	Histone-related	Histone
e7egbL1	L:57-130	Histone-like	Histone-related	Histone
e7egbo5	o:11-155,o:181-350	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e7egbo9	o:351-388,o:450-533	cradle loop barrel	RIFT-related	double psi
e7egbo6	o:389-449	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7egbo3	o:534-685	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e7egbo1	o:686-894	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e7egbo2	o:895-1082	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e7egbo7	o:1083-1135,o:1361-1487	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e7egbo8	o:1136-1164,o:1298-1360	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7egbo4	o:1165-1297	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7egbO2	O:3-53	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e7egbO1	O:54-99	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e7egbp7	p:16-67,p:87-200,p:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7egbp4	p:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e7egbp5	p:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e7egbp1	p:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e7egbp2	p:769-805,p:930-1053	cradle loop barrel	RIFT-related	double psi
e7egbp6	p:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e7egbp3	p:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7egbP1	P:161-256	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e7egbP2	P:257-337	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e7egbq1	q:2-42,q:179-271	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e7egbq2	q:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e7egbQ1	Q:9-63,Q:310-321	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e7egbQ2	Q:322-376	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e7egbr1	r:14-141	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e7egbR1	R:13-50	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egbR3	R:105-207	HTH	HTH	Cyclin-like
e7egbR2	R:208-316	HTH	HTH	Cyclin-like
e7egbs2	s:2-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e7egbs1	s:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e7egbS1	S:5-54,S:93-150	triple barrel	triple barrel	Rap30/74 interaction domains-like
e7egbt1	t:49-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e7egbu2	u:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e7egbu1	u:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e7egbU2	U:11-100,U:175-203	HTH	HTH	winged
e7egbU1	U:101-174	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egbv1	v:2-149	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e7egbV2	V:68-146	HTH	HTH	winged
e7egbV3	V:147-206	HTH	HTH	winged
e7egbV1	V:207-239	HTH	HTH	winged
e7egbw1	w:12-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egbw2	w:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e7egbx1	x:1-64	HTH	RPB10	RPB10
e7egby1	y:1-117	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e7egbz1	z:15-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related