Domain ID e7egbw1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: RNA_POL_M_15KD
UID: 002729755
Type: Automatic domain
Parent: e1twfI1
Range: w:12-59
Ligands: ZN
PDB: 7egb
PDB Description: DNA-directed RNA polymerase II subunit RPB9
Species:

Structure of domain e7egbw1

Domains in the same chain:

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e7egbw1 w:12-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egbw2 w:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e7egb22 2:51-238 HAD domain-like HAD domain-related vWA-like
e7egb21 2:239-316 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egb23 2:317-387 RING/U-box-like RING/U-box-like Cysteine-rich domain
e7egb31 3:8-72,3:95-264 HAD domain-like HAD domain-related vWA-like
e7egb32 3:265-292 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egb51 5:7-60 TFB5-related TFB5-related TFB5-related
e7egb71 7:1-243 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7egb73 7:244-446 XPD arch domain XPD arch domain XPD arch domain
e7egb72 7:447-734 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7egb81 8:13-310 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e7egb92 9:2-161 HTH HTH Cyclin-like
e7egb91 9:162-288 HTH HTH Cyclin-like
e7egbB2 B:19-254 Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related
e7egbB1 B:255-648 Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain
e7egbB3 B:649-988 Repetitive alpha hairpins ARM repeat ARM repeat
e7egbe1 e:202-343,e:363-380 Taf5 N-terminal domain-like Taf5 N-terminal domain-like Taf5 N-terminal domain-like
e7egbe2 e:417-799 beta-propeller-like beta-propeller 8-bladed
e7egbE1 E:209-378 Taf5 N-terminal domain-like Taf5 N-terminal domain-like Taf5 N-terminal domain-like
e7egbE2 E:417-798 beta-propeller-like beta-propeller 8-bladed
e7egbj1 j:114-218 Histone-like Histone-related Histone
e7egbJ1 J:114-217 Histone-like Histone-related Histone
e7egbk1 k:114-211 Histone-like Histone-related Histone
e7egbL1 L:57-130 Histone-like Histone-related Histone
e7egbo5 o:11-155,o:181-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7egbo9 o:351-388,o:450-533 cradle loop barrel RIFT-related double psi
e7egbo6 o:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7egbo3 o:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7egbo1 o:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7egbo2 o:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e7egbo7 o:1083-1135,o:1361-1487 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7egbo8 o:1136-1164,o:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7egbo4 o:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7egbO2 O:3-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7egbO1 O:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7egbp7 p:16-67,p:87-200,p:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7egbp4 p:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7egbp5 p:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7egbp1 p:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7egbp2 p:769-805,p:930-1053 cradle loop barrel RIFT-related double psi
e7egbp6 p:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7egbp3 p:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7egbP1 P:161-256 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7egbP2 P:257-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7egbq1 q:2-42,q:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7egbq2 q:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7egbQ1 Q:9-63,Q:310-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7egbQ2 Q:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7egbr1 r:14-141 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7egbR1 R:13-50 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egbR3 R:105-207 HTH HTH Cyclin-like
e7egbR2 R:208-316 HTH HTH Cyclin-like
e7egbs2 s:2-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7egbs1 s:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7egbS1 S:5-54,S:93-150 triple barrel triple barrel Rap30/74 interaction domains-like
e7egbt1 t:49-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7egbu2 u:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7egbu1 u:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7egbU2 U:11-100,U:175-203 HTH HTH winged
e7egbU1 U:101-174 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egbv1 v:2-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7egbV2 V:68-146 HTH HTH winged
e7egbV3 V:147-206 HTH HTH winged
e7egbV1 V:207-239 HTH HTH winged
e7egbw1 w:12-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egbw2 w:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7egbx1 x:1-64 HTH RPB10 RPB10
e7egby1 y:1-117 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7egbz1 z:15-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related