Citrus Sinensis ID: 002583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900----
MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEEEEHHHHcccccccccccccccccccccccHHHHHHHHHccccccHHHcHHHHHHHHHHHHccccccccccccccccccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHHHcccccccccccEEEccccEEEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccEEEEEEccEEEEEEcEEEEccEEEEEEEEEccccccccccEEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHcccEEcccccccccEEEEEEccccccccccccccccccccEEEccccccccccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcc
ccccccEEEcccccccccccccEEccccHEEEcccccccHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHcEEEEEEcccHHccccccHHHHHHHHccccHHHEEEcccccccHHcccccccccccEEEEEcccccccccccccccccEEEEEHHEEHHEccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEEEEEccccccccHHHHHHHHccccEcHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEcccccEEEEEccccEEEcccccEccEEEEEEcccEEEEEEEEEcccEEEEEEEEEEcccEEEcccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHcEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHcccHEEEcccccccEEEEEccccHHHHHcccccccHcccEEEEccccEcccccccccEEEEEHHHHHHcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccEEcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEcccHHHcccccHHHHHHHHHHHHcccccccccccHccccccHHHHHHHHHHHHHHHHHHcc
mnqykpiflgtadpntqlsklTRACNTqkciraggkhndlddvgkdtYHHTFFEMlgnwsfgdyfkNEAIEWAWELLTKVYrlpadrlyatyfggdekaglapdneARDIWLKflpasrvlpfgckdnfwemgdtgpcgpcseihydrtgnrdaaslvnnddptciEIWNIVFIQfnresdgslkplpakhvdtglgFERLTSILQNkmsnydtdvfMPIFDAIQqatgarpysgkvgaddadkvDMAYRVVADHIRTLSFAiadgscpgnegrEYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGkvlsgqdafilwdtygfpldLTQLMAEERGLLVDIEGFNNAMDEARERSRSAqnkqaggaivMDADATAALHkrgvlatddsfkfiwFQDHKSVIKAIYTGsefiesvvpgnEVGIVLASSSfyaeqggqifdegFIEGLFGSFYVRNVQIYGGFVIHIgsltegagrfsvgeEVICKvdydrrkliapnhtCTHMLNFALREVlgdhvdqkgsvvlpeklrfdfshgkpvdpehLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLravfgevypdpvrVVAIGRKVedlladpenkEWLSISAelcggthlsnTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKvdgaaipapkkADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEaaasngkpfciSRVEVGLDAAAVREAVLKVIEQkgmpvmvfstdettnkavvcagvpeksdqskqLEVSEWLTAALQPlkgrcgkgkgglasgqgtdaaqvTPAMDLAAEFAAMKLR
mnqykpiflgtadpntqlSKLTRACNTQKCiraggkhndlddVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSfaiadgscpgneGREYVLRRILRRAVRYGSEvlkaqdgffnGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVlpeklrfdfshgkpvdpehLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAslkskvdgaaipapkkaDIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAeaaasngkpfcISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPeksdqskqlEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR
MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQreahireiiaaeeaSFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQkavkvatetaeaaaSNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLkgrcgkgkgglasgqgTDAAQVTPAMDLAAEFAAMKLR
*******FLG*******LSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES***L*PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFN********************AIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEV**********************************IRAKIALL*********************************GKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGV************SEWLTAALQPL**************************************
MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNN**********************MDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKI*GSLLEKTVASLKSKVDGAAIPAPKKADIRAKIAL*******************************ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR
MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDE**************GAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQ*********EENLQKA*************NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGV**********EVSEWLTAALQPLKGRC**************AAQVTPAMDLAAEFAAMKLR
*NQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCG**KGG******TDAAQVTPAMDLAAEFAAMKLR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDxxxxxxxxxxxxxxxxxxxxxQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVxxxxxxxxxxxxxxxxxxxxxCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query904 2.2.26 [Sep-21-2011]
P364281003 Alanine--tRNA ligase OS=A yes no 0.998 0.900 0.815 0.0
Q54Y20946 Alanine--tRNA ligase, cyt yes no 0.988 0.945 0.503 0.0
Q5A8K2969 Alanine--tRNA ligase OS=C N/A no 0.990 0.923 0.490 0.0
P40825983 Alanine--tRNA ligase, mit yes no 0.891 0.819 0.523 0.0
P50475968 Alanine--tRNA ligase, cyt yes no 0.985 0.920 0.489 0.0
Q8CFX8968 Alanine--tRNA ligase, cyt N/A no 0.985 0.920 0.488 0.0
Q8BGQ7968 Alanine--tRNA ligase, cyt yes no 0.985 0.920 0.488 0.0
Q5RC02968 Alanine--tRNA ligase, cyt yes no 0.985 0.920 0.486 0.0
P49588968 Alanine--tRNA ligase, cyt yes no 0.985 0.920 0.487 0.0
P21894967 Alanine--tRNA ligase, cyt N/A no 0.977 0.914 0.476 0.0
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 Back     alignment and function desciption
 Score = 1496 bits (3873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/903 (81%), Positives = 818/903 (90%)

Query: 1    MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
            MNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS
Sbjct: 100  MNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 159

Query: 61   FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
            FGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RV
Sbjct: 160  FGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRV 219

Query: 121  LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
            LPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRES
Sbjct: 220  LPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRES 279

Query: 181  DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240
            DGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +
Sbjct: 280  DGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPE 339

Query: 241  DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 300
            D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFF
Sbjct: 340  DVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFF 399

Query: 301  NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLS 360
            NGLV+ V++VMGDVF ELK+ E  I +II  EEASF KTL KGIEKF+KA Q VQG  LS
Sbjct: 400  NGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLS 459

Query: 361  GQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMD 420
            G DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMD
Sbjct: 460  GDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMD 519

Query: 421  ADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFY 480
            ADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES    + VG+VL S+SFY
Sbjct: 520  ADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFY 579

Query: 481  AEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR 540
            AEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L++  G  SVG++VICKVDY+RR
Sbjct: 580  AEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERR 639

Query: 541  KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 600
            KLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN
Sbjct: 640  KLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVN 699

Query: 601  EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLS 660
            +QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW  
Sbjct: 700  KQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSL 759

Query: 661  ISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDA 720
            +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT  A+ A  AA  LE+EV+DA
Sbjct: 760  LSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDA 819

Query: 721  SKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 780
            S+ EGS LEK V++LKS+VD A IPA KKADIR KIA LQN+VRKAQKK+AE+NL+K+VK
Sbjct: 820  SRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVK 879

Query: 781  VATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVC 840
            +ATE AE+AAS+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAVVC
Sbjct: 880  LATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVC 939

Query: 841  AGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 900
            AGVPEKSDQ K L+V+EWLT AL PLKGRCGKGKGGLASGQGTDA+QV  A+D+A+ FA+
Sbjct: 940  AGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFAS 999

Query: 901  MKL 903
            MKL
Sbjct: 1000 MKL 1002
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 Back     alignment and function description
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 Back     alignment and function description
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
255580622 1025 alanyl-tRNA synthetase, putative [Ricinu 1.0 0.881 0.842 0.0
2254237791002 PREDICTED: alanyl-tRNA synthetase-like [ 1.0 0.902 0.852 0.0
449461691956 PREDICTED: alanine--tRNA ligase-like [Cu 0.998 0.944 0.832 0.0
449508396956 PREDICTED: LOW QUALITY PROTEIN: alanine- 0.998 0.944 0.830 0.0
297737260960 unnamed protein product [Vitis vinifera] 0.998 0.940 0.840 0.0
297852712955 cytosolic tRNA-Ala synthetase [Arabidops 0.998 0.945 0.817 0.0
306947351003 Alanyl-tRNA synthetase [Arabidopsis thal 0.998 0.900 0.815 0.0
5734779955 cytosolic tRNA-Ala synthetase [Arabidops 0.998 0.945 0.815 0.0
16733651003 mitochondrial tRNA-Ala synthetase [Arabi 0.998 0.900 0.811 0.0
334183197963 Alanyl-tRNA synthetase [Arabidopsis thal 0.998 0.937 0.807 0.0
>gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1600 bits (4144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/904 (84%), Positives = 826/904 (91%)

Query: 1    MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
            MNQ+KPIFLGTADPNT LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS
Sbjct: 122  MNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 181

Query: 61   FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
            FGDYFK EAI WAWELLTK+Y+LPADR+YATYFGGDEKAGLAPD EARD WL+FLP  RV
Sbjct: 182  FGDYFKREAIGWAWELLTKIYKLPADRIYATYFGGDEKAGLAPDAEARDFWLQFLPPERV 241

Query: 121  LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
            LPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDA+ LVNNDDPTCIEIWN+VFIQFNRES
Sbjct: 242  LPFGCKDNFWEMGDTGPCGPCTEIHYDRVGNRDASQLVNNDDPTCIEIWNLVFIQFNRES 301

Query: 181  DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240
            DGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVF+PIFDAIQQATGARPYSGKVG+D
Sbjct: 302  DGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSD 361

Query: 241  DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 300
            D D+VDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ+GFF
Sbjct: 362  DVDRVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFF 421

Query: 301  NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLS 360
            NGLVNIVVKVMGDVFPEL Q E  IREII  EEASFGKTLLKGIEKFKKAAQ+VQGKV  
Sbjct: 422  NGLVNIVVKVMGDVFPELIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSC 481

Query: 361  GQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMD 420
             QDAF+LWDTYGFPLDLTQLMAEERGL VD+EGFNNAMDEARERSR+AQNKQAGG I+MD
Sbjct: 482  LQDAFVLWDTYGFPLDLTQLMAEERGLWVDVEGFNNAMDEARERSRNAQNKQAGGDIIMD 541

Query: 421  ADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFY 480
            ADAT+ALHK+GV  TDDS+KFIWFQDH+SVIKAIYTG+EF+ S    NEVGIVL S+SFY
Sbjct: 542  ADATSALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSFY 601

Query: 481  AEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR 540
            AEQGGQIFD G +EG FGSF V NVQI+GGFV+HIGSLT  A R SVG++VICKVDYDRR
Sbjct: 602  AEQGGQIFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDRR 661

Query: 541  KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 600
             LIAPNHTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPVDP  LR+IESIVN
Sbjct: 662  TLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIVN 721

Query: 601  EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLS 660
            EQIKAEL+V +KEATL+EAK INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW S
Sbjct: 722  EQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWSS 781

Query: 661  ISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDA 720
            ISAELCGGTH+SNT+EA+AFALLSEEGIAKG+RRITAVTT  A+KA E A  LE+E D+ 
Sbjct: 782  ISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEADEI 841

Query: 721  SKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 780
            SK EGSLLEK VASLKS+VD A IPA KK DIR KI+ LQ++VRKAQKK++EEN+QKAVK
Sbjct: 842  SKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKAVK 901

Query: 781  VATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVC 840
            +ATE AE AAS GK FCISRV+VGLDAAAVREAV KV+++KG+  MVFS DETTNK VVC
Sbjct: 902  IATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVVVC 961

Query: 841  AGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 900
            AGV EK D+SKQLEVSEWLTAAL+PL GRCGKGKGGLA+GQGT+   +  AM+LAAEFA 
Sbjct: 962  AGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEFAQ 1021

Query: 901  MKLR 904
            MKLR
Sbjct: 1022 MKLR 1025

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183197|ref|NP_001185186.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
TAIR|locus:20119621003 ALATS "Alanyl-tRNA synthetase" 0.998 0.900 0.778 0.0
DICTYBASE|DDB_G0277823946 alaS "alanine-tRNA ligase" [Di 0.952 0.910 0.510 1.9e-227
CGD|CAL0001447969 ALA1 [Candida albicans (taxid: 0.923 0.861 0.503 1.6e-219
UNIPROTKB|Q5A8K2969 ALA1 "Alanine--tRNA ligase" [C 0.923 0.861 0.503 1.6e-219
SGD|S000005862983 ALA1 "Cytoplasmic and mitochon 0.893 0.821 0.510 9.1e-219
UNIPROTKB|A6QLT9968 AARS "AARS protein" [Bos tauru 0.985 0.920 0.473 6.3e-211
RGD|1304832968 Aars "alanyl-tRNA synthetase" 0.986 0.921 0.472 1.3e-210
MGI|MGI:2384560968 Aars "alanyl-tRNA synthetase" 0.983 0.918 0.476 1.7e-210
UNIPROTKB|P49588968 AARS "Alanine--tRNA ligase, cy 0.986 0.921 0.472 1.9e-209
UNIPROTKB|F1P5J5916 AARS "Uncharacterized protein" 0.926 0.914 0.489 3.1e-209
TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3706 (1309.6 bits), Expect = 0., P = 0.
 Identities = 703/903 (77%), Positives = 781/903 (86%)

Query:     1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
             MNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS
Sbjct:   100 MNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 159

Query:    61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
             FGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RV
Sbjct:   160 FGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRV 219

Query:   121 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
             LPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRES
Sbjct:   220 LPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRES 279

Query:   181 DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240
             DGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +
Sbjct:   280 DGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPE 339

Query:   241 DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 300
             D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFF
Sbjct:   340 DVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFF 399

Query:   301 NGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDVQGKVLS 360
             NGLV+ V++VMGDVF ELK+              SF KTL KGIEKF+KA Q VQG  LS
Sbjct:   400 NGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLS 459

Query:   361 GQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMD 420
             G DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMD
Sbjct:   460 GDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMD 519

Query:   421 ADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFY 480
             ADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES    + VG+VL S+SFY
Sbjct:   520 ADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFY 579

Query:   481 AEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR 540
             AEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L++  G  SVG++VICKVDY+RR
Sbjct:   580 AEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERR 639

Query:   541 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 600
             KLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN
Sbjct:   640 KLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVN 699

Query:   601 EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLS 660
             +QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW  
Sbjct:   700 KQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSL 759

Query:   661 ISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDA 720
             +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT  A+ A  AA  LE+EV+DA
Sbjct:   760 LSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDA 819

Query:   721 SKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQXXXX 780
             S+ EGS LEK V++LKS+VD A IPA KKADIR KIA LQN+VRKAQKK+AE+NL+    
Sbjct:   820 SRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVK 879

Query:   781 XXXXXXXXXXSNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVC 840
                       S+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAVVC
Sbjct:   880 LATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVC 939

Query:   841 AGVPEKSDQSKQLEVSEWLTAALQPLXXXXXXXXXXXXXXXXTDAAQVTPAMDLAAEFAA 900
             AGVPEKSDQ K L+V+EWLT AL PL                TDA+QV  A+D+A+ FA+
Sbjct:   940 AGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFAS 999

Query:   901 MKL 903
             MKL
Sbjct:  1000 MKL 1002
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004813 "alanine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA
GO:0043039 "tRNA aminoacylation" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7UBU3SYA_SHIFL6, ., 1, ., 1, ., 70.37880.88160.9098yesno
P36428SYA_ARATH6, ., 1, ., 1, ., 70.81500.99880.9002yesno
A8ANQ1SYA_CITK86, ., 1, ., 1, ., 70.38120.88490.9142yesno
O13914SYA_SCHPO6, ., 1, ., 1, ., 70.48360.98670.9301yesno
A7ZQC5SYA_ECO246, ., 1, ., 1, ., 70.380.88160.9098yesno
O01541SYAC_CAEEL6, ., 1, ., 1, ., 70.47590.97560.9111yesno
A4WDQ6SYA_ENT386, ., 1, ., 1, ., 70.38110.88160.9108yesno
A6VA71SYA_PSEA76, ., 1, ., 1, ., 70.39780.90260.9336yesno
Q87LR3SYA_VIBPA6, ., 1, ., 1, ., 70.39090.87380.9186yesno
Q5RC02SYAC_PONAB6, ., 1, ., 1, ., 70.48600.98560.9204yesno
Q8BGQ7SYAC_MOUSE6, ., 1, ., 1, ., 70.48810.98560.9204yesno
Q3YYG6SYA_SHISS6, ., 1, ., 1, ., 70.380.88160.9098yesno
A1BD33SYA_CHLPD6, ., 1, ., 1, ., 70.40480.89930.9155yesno
Q02I63SYA_PSEAB6, ., 1, ., 1, ., 70.39580.90040.9313yesno
A6H0Y3SYA_FLAPJ6, ., 1, ., 1, ., 70.38200.90700.9244yesno
Q9VLM8SYAC_DROME6, ., 1, ., 1, ., 70.45610.98230.9192yesno
Q54Y20SYAC_DICDI6, ., 1, ., 1, ., 70.50330.98890.9450yesno
P40825SYA_YEAST6, ., 1, ., 1, ., 70.52360.89150.8199yesno
B1LQ15SYA_ECOSM6, ., 1, ., 1, ., 70.37880.88160.9098yesno
P50475SYAC_RAT6, ., 1, ., 1, ., 70.48920.98560.9204yesno
A4SGJ6SYA_PROVI6, ., 1, ., 1, ., 70.42080.80530.8225yesno
B1XCM5SYA_ECODH6, ., 1, ., 1, ., 70.380.88160.9098yesno
Q1R804SYA_ECOUT6, ., 1, ., 1, ., 70.380.88160.9098yesno
Q0TEI3SYA_ECOL56, ., 1, ., 1, ., 70.380.88160.9098yesno
B1IUY2SYA_ECOLC6, ., 1, ., 1, ., 70.380.88160.9098yesno
Q3ATN3SYA_CHLCH6, ., 1, ., 1, ., 70.40360.84400.8611yesno
Q9I553SYA_PSEAE6, ., 1, ., 1, ., 70.39690.90040.9313yesno
A1AEN7SYA_ECOK16, ., 1, ., 1, ., 70.380.88160.9098yesno
B2U049SYA_SHIB36, ., 1, ., 1, ., 70.380.88160.9098yesno
Q8KG04SYA_CHLTE6, ., 1, ., 1, ., 70.42020.82070.8384yesno
Q0T1C3SYA_SHIF86, ., 1, ., 1, ., 70.37880.88160.9098yesno
A8A3H4SYA_ECOHS6, ., 1, ., 1, ., 70.380.88160.9098yesno
Q5AQL1SYA_EMENI6, ., 1, ., 1, ., 70.48080.98340.9250yesno
P49588SYAC_HUMAN6, ., 1, ., 1, ., 70.48700.98560.9204yesno
A8GA09SYA_SERP56, ., 1, ., 1, ., 70.36990.90260.9325yesno
Q6LMU3SYA_PHOPR6, ., 1, ., 1, ., 70.38880.90150.9335yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.70.979
3rd Layer6.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013953001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (963 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00022843001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)
   •  • 0.866
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
•     • 0.851
GSVIVG00001918001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)
   •  • 0.815
GSVIVG00016648001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa)
   •  • 0.803
GSVIVG00036298001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa)
•     • 0.779
GSVIVG00017986001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (411 aa)
      • 0.749
GSVIVG00038605001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (468 aa)
• ••  • 0.709
GSVIVG00020546001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)
•     • 0.704
rpoC2
RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6;; DNA-dependent RNA polymerase catalyzes [...] (692 aa)
      • 0.702
GSVIVG00023243001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (505 aa)
  ••  • 0.698

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 0.0
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 0.0
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 0.0
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 0.0
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 0.0
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 1e-109
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-106
PRK13902900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 4e-86
TIGR03683902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 3e-82
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-33
COG2872241 COG2872, COG2872, Predicted metal-dependent hydrol 2e-27
smart0086343 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn 1e-12
pfam0797344 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt 2e-12
PLN02961223 PLN02961, PLN02961, alanine-tRNA ligase 2e-12
PRK00413 638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 3e-05
PRK12305 575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 2e-04
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score = 1551 bits (4019), Expect = 0.0
 Identities = 606/906 (66%), Positives = 697/906 (76%), Gaps = 26/906 (2%)

Query: 1   MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
           MNQ+KPIFLGTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS
Sbjct: 52  MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 111

Query: 61  FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
           FGDYFK EAI WAWELLTKVY LPADRLYATYFGGDEK   APD+EAR IWL +LP  RV
Sbjct: 112 FGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERV 169

Query: 121 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
           LPFGCKDNFWEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP  IEIWN+VFIQFNRE+
Sbjct: 170 LPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREA 229

Query: 181 DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240
           DGSLKPLPAKHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+
Sbjct: 230 DGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289

Query: 241 DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 300
           D D+VDMAYRVVADHIRTLSFAIADG  P NEGR YVLRR+LRRAVRYG  +L A++GFF
Sbjct: 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFF 349

Query: 301 NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GK 357
             LV +VV++ GDVFPE+K+ E  I EIIA EE SFGKTL KGIEKFKKA    +   G 
Sbjct: 350 PALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGP 409

Query: 358 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAI 417
           VLSG+DAF+L+DTYGFP+DLT+LMAEERG+ VD+EGF  AM+EARERSR+A  K  GGAI
Sbjct: 410 VLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAI 469

Query: 418 VMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASS 477
            + A+AT+ L K+GV ATDD  K+ W  DH++V+KAI TG  F+ESV  G+EVGIVL  +
Sbjct: 470 ELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKT 529

Query: 478 SFYAEQGGQIFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVD 536
           SFYAE GGQI D G +EG  G    V +VQ  GGFV+HIG++TE  G  SVG+ V CKVD
Sbjct: 530 SFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVD 587

Query: 537 YDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE 596
           YDRR+ IAPNHT TH+LN AL+EVLGDHVDQKGS+V  EKLRFDFSHGKP+ PE LR +E
Sbjct: 588 YDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVE 647

Query: 597 SIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENK 656
           S+VNE I   L V +KE  LA+AK INGLRAVFGE YPDPVRVV++G             
Sbjct: 648 SLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV----------- 696

Query: 657 EWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKE 716
                S ELCGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A  AA SLE+E
Sbjct: 697 ----YSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERE 752

Query: 717 VDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQ 776
           +D A K+EGS LEK VASLKS+VD A IPA KK +IRA+++ LQ ++R AQK+ A    +
Sbjct: 753 LDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAK 812

Query: 777 KAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTN 835
            AV  ATE A  A S GK   ++R++VG+DAAA++EA  KVI +      +V S+DE   
Sbjct: 813 LAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKG 872

Query: 836 KAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLA 895
           K  + A VP    + K L+  +WL  A+  L G  G GK G A GQG DA ++  A++ A
Sbjct: 873 KVSLVAAVPPGVVK-KGLKAGKWL-GAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKA 930

Query: 896 AEFAAM 901
             FA  
Sbjct: 931 RAFAVA 936

Length = 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 904
KOG0188895 consensus Alanyl-tRNA synthetase [Translation, rib 100.0
PLN02900936 alanyl-tRNA synthetase 100.0
COG0013879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
TIGR00344851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252865 alaS alanyl-tRNA synthetase; Reviewed 100.0
TIGR03683902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902900 alaS alanyl-tRNA synthetase; Provisional 100.0
PRK01584594 alanyl-tRNA synthetase; Provisional 100.0
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
COG2872241 Predicted metal-dependent hydrolases related to al 100.0
PLN02961223 alanine-tRNA ligase 100.0
KOG2105415 consensus Predicted metal-dependent hydrolase, con 100.0
PLN02837 614 threonine-tRNA ligase 99.91
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.89
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.89
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.87
PLN02908 686 threonyl-tRNA synthetase 99.83
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.83
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.69
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 99.31
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 98.97
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 98.72
KOG1637 560 consensus Threonyl-tRNA synthetase [Translation, r 98.09
PF0227268 DHHA1: DHHA1 domain; InterPro: IPR003156 This doma 97.8
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 93.59
TIGR00644 539 recJ single-stranded-DNA-specific exonuclease RecJ 87.38
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 85.31
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 84.45
PF02091284 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit 83.07
COG0752298 GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl 80.91
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-234  Score=1951.76  Aligned_cols=847  Identities=55%  Similarity=0.904  Sum_probs=784.8

Q ss_pred             CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583            1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV   80 (904)
Q Consensus         1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~   80 (904)
                      ||||||+|||+      +++++||+|||||||+||||||||+||+|.|||||||||||||||||||+|||.|||||||++
T Consensus        43 MNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~v  116 (895)
T KOG0188|consen   43 MNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFV  116 (895)
T ss_pred             hhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHh
Confidence            99999999999      456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCC
Q 002583           81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVN  159 (904)
Q Consensus        81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~-~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~  159 (904)
                      ||||++|||||||+||+++|||+|.||++||+++ +|++||++++.+|||||||+||||||||||||||+||+++++|||
T Consensus       117 ygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~srILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN  196 (895)
T KOG0188|consen  117 YGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDSRILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVN  196 (895)
T ss_pred             hcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChhhccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhc
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCC
Q 002583          160 NDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGA  239 (904)
Q Consensus       160 ~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~~~~  239 (904)
                      .|+|++|||||||||||||++||+|.|||+||||||||||||++|||+|.||||||+|+|||++|++.++++ |+|    
T Consensus       197 ~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----  271 (895)
T KOG0188|consen  197 HDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----  271 (895)
T ss_pred             CCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996 998    


Q ss_pred             CcchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCChhhH
Q 002583          240 DDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK  319 (904)
Q Consensus       240 ~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~  319 (904)
                      ++.+.+|+||||+|||+||+++|||||.+|+|+|||||||||||||+||++++||++.+||.+|||+|++.||++||||.
T Consensus       272 ~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~  351 (895)
T KOG0188|consen  272 EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELK  351 (895)
T ss_pred             CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhHHHHH
Q 002583          320 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM  398 (904)
Q Consensus       320 ~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~  398 (904)
                      .+++.|.+||..||+.|++||++|.++|++.++.++ +++|||++||.||||||||+|||++||+|+|++||+++|+++.
T Consensus       352 ~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar  431 (895)
T KOG0188|consen  352 RDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAAR  431 (895)
T ss_pred             cCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHH
Confidence            999999999999999999999999999999999887 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeecee
Q 002583          399 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSS  478 (904)
Q Consensus       399 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~  478 (904)
                      ++.++.|+++.+.+.+  +.++.  +.+|    +|+|+|++||+-...++++|++++.++.+++++..|+.++||||+|+
T Consensus       432 ~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdDs~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktn  503 (895)
T KOG0188|consen  432 QEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDDSFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTN  503 (895)
T ss_pred             HHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCCccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecce
Confidence            9999999876443322  33333  3333    79999999995367899999999999999999999999999999999


Q ss_pred             EEEccCCeeceeeEEEccCe---eEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHH
Q 002583          479 FYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNF  555 (904)
Q Consensus       479 FYpegGGQ~~D~G~i~~~~~---~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~  555 (904)
                      ||+|+|||.+|+|.|...+.   .+.|..++. +|+|+|++.+ .  +.+++|++|.+++|.+||+.+|++|||||||++
T Consensus       504 FYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~  579 (895)
T KOG0188|consen  504 FYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNF  579 (895)
T ss_pred             eehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHH
Confidence            99999999999999986543   355555565 8999999986 3  789999999999999999999999999999999


Q ss_pred             HHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCcCCC
Q 002583          556 ALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPD  635 (904)
Q Consensus       556 Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~d  635 (904)
                      |||+++ ..+.|+||++.||++||||++..++|.++|+++|..+|++|.++.||..+.+|+++|++++|+|+.|+|.||+
T Consensus       580 aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPd  658 (895)
T KOG0188|consen  580 ALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPD  658 (895)
T ss_pred             HHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCC
Confidence            999999 5678999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHH
Q 002583          636 PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEK  715 (904)
Q Consensus       636 ~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~  715 (904)
                      +||||+++.             +..+++|+|||||+.|||+||.|.|++++++++|+|||.+|||+.|.+.++..+.   
T Consensus       659 pVRVVsvg~-------------~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~---  722 (895)
T KOG0188|consen  659 PVRVVSVGA-------------GQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED---  722 (895)
T ss_pred             ceEEEEecc-------------ccccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH---
Confidence            999999984             2357999999999999999999999999999999999999999999998876653   


Q ss_pred             HHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 002583          716 EVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKP  795 (904)
Q Consensus       716 ~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~~~~~~  795 (904)
                      ....+.+.+ ..+.+++..+.+.+..+.+|++.+.+++++++++++.++++.|.+++..++.....++++.+.  ..+.+
T Consensus       723 ~~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~  799 (895)
T KOG0188|consen  723 LDKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRELLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQP  799 (895)
T ss_pred             HHhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCC
Confidence            122222333 567788999999998899999999999999999999999999999888888888777777653  56788


Q ss_pred             EEEEEeccCCCHHHHHHHHHHHHh-ccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCCC
Q 002583          796 FCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK  874 (904)
Q Consensus       796 ~iv~~~~~~~d~~~L~~~~~~l~~-~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~Gk  874 (904)
                      ++|..++..          ..+++ .|+.++++|+ +++.+|+.+.|.|++.+ ..++++|.+|++.++..+||||| ||
T Consensus       800 ~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~~gkv~~~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK  866 (895)
T KOG0188|consen  800 LLVHYIESS----------KLLKKQAPDKSIMLLS-DDESGKVTCLCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GK  866 (895)
T ss_pred             EEEEEecch----------HHHHhcCCCCeeEEec-cCCCCeEEEEEeecHHH-hhccCCHHHHHHHHHHhhCCccC-Cc
Confidence            999888632          34455 5888999998 66678999999999998 88899999999999999999999 99


Q ss_pred             CCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 002583          875 GGLASGQGTDAAQVTPAMDLAAEFAAMKL  903 (904)
Q Consensus       875 ~~~AQG~g~~~~~l~~al~~a~~~~~~~l  903 (904)
                      +..|||.|.++.+|++|++.|.++++.+|
T Consensus       867 ~~~~q~~g~~~~~l~~av~~a~~~a~~~L  895 (895)
T KOG0188|consen  867 GVLAQATGNNVGCLDEAVSLATEFALLKL  895 (895)
T ss_pred             cchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999987654

>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-96
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 5e-96
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 3e-95
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 3e-95
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 6e-85
2zzf_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 5e-38
2zze_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 2e-28
2ztg_A739 Crystal Structure Of Archaeoglobus Fulgidus Alanyl- 3e-23
2e1b_A216 Crystal Structure Of The Alax-M Trans-Editing Enzym 1e-07
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  351 bits (900), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/421 (45%), Positives = 254/421 (60%), Gaps = 38/421 (9%)
Query: 1   MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
           MNQ+K +FLG    N      +RA  +Q+C+RAGGKHNDL++VG    HHTFFEMLGN+S
Sbjct: 43  MNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFS 97
Query: 61  FGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLP 116
           FGDYFK +AI +AW LLT  K + LP +RL+ T +          D+EA +IW K   +P
Sbjct: 98  FGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY--------ESDDEAYEIWEKEVGIP 149
Query: 117 ASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGN--RDAASLVNNDDPTCIE 167
             R++  G         DNFW+MGDTGPCGPC+EI YD   +           D    IE
Sbjct: 150 RERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIE 209
Query: 168 IWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227
           IWNIVF+QFNR++DG+++PLP   VDTG+G ER+ ++LQ+  SNYD D+F  +  A+ + 
Sbjct: 210 IWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKV 269
Query: 228 TGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVR 287
           TGA   S K           + RV+ADHIR+ +F IADG  P NE R YVLRRI+RRAVR
Sbjct: 270 TGATDLSNK-----------SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVR 318
Query: 288 YGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKF 347
           +G+ +L A++ FF  LV  ++ VMG    +LK+               F +TL +G+   
Sbjct: 319 HGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALL 377
Query: 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRS 407
            +    + G  L G+ AF L+DTYGFP+DLT  +  ER + VD  GF  AM+E R R+R 
Sbjct: 378 DEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 437
Query: 408 A 408
           A
Sbjct: 438 A 438
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 Back     alignment and structure
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 0.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 0.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 1e-148
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 2e-68
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 7e-67
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 5e-47
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2zvf_A171 Alanyl-tRNA synthetase; C-terminal, oligomerizatio 2e-05
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 9e-05
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 2e-04
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
 Score =  657 bits (1696), Expect = 0.0
 Identities = 156/737 (21%), Positives = 265/737 (35%), Gaps = 139/737 (18%)

Query: 1   MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 59
           +  ++P    G A P            +Q CIR     +DLD VG+   H T FEM+ + 
Sbjct: 101 IADFQPFVTSGVAPP-----PANPLTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHH 151

Query: 60  SFGD-----YFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 114
           +F       Y+KNE + +  ELL ++  +  + +                          
Sbjct: 152 AFNYPGKEIYWKNETVAYCTELLNELG-VKKEDIVY------------------------ 186

Query: 115 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTG---------NRDAASLVNNDDPTC 165
                      K+  W  G  G  GPC E                       +       
Sbjct: 187 -----------KEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARY 233

Query: 166 IEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDA 223
            ++ N +                   V   +  E + +I+   N   N + +    I   
Sbjct: 234 RKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAE 293

Query: 224 IQQATG------------------ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD 265
             +  G                            +           +ADH R + F + D
Sbjct: 294 SSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGD 353

Query: 266 GSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHI 325
           G  P N G  Y+ R ++RR++R   E L+        LV +  K++G  F       + +
Sbjct: 354 GLVPSNAGAGYLARLMIRRSLRLAEE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STV 408

Query: 326 REIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEER 385
           +EI+  E+  +  T+ KG    ++  +    K L   D   L+D++G P++L   +A E+
Sbjct: 409 QEILELEKERYRTTVSKGTRLVERLVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEK 466

Query: 386 GLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWF 444
           G  V++       + +   ++   Q K     +  +  AT               + +++
Sbjct: 467 GAEVEMPKDIYAELAKRHSKAEKVQEK--KITLQNEYPAT---------------EKLYY 509

Query: 445 QDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 504
            D         T  EF   V+      ++L  S+FY E GGQ  D G++    G F V +
Sbjct: 510 DD--------PTLLEFEAEVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVD 561

Query: 505 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH 564
           V    G V+H+        +  VG +V   +D D R     +H+ TH+L ++L++VLG+H
Sbjct: 562 VLEADGVVLHVVK----GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNH 617

Query: 565 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCING 624
           V Q G+     K R D +H +    E ++ IE + N +I A   +  +     EA+   G
Sbjct: 618 VWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFG 677

Query: 625 LRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFAL 682
              ++  G      +RVV +G                    + CGGTH  +T E     +
Sbjct: 678 F-RLYQGGVPPGRKIRVVQVG-----------------DDVQACGGTHCRSTGEIGMLKI 719

Query: 683 LSEEGIAKGIRRITAVT 699
           L  E I  G+ R     
Sbjct: 720 LKVESIQDGVIRFEFAA 736
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 904
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 2e-69
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 3e-45
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 6e-27
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 9e-24
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 5e-13
d1tkea2162 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR 3e-12
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 4e-12
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score =  228 bits (582), Expect = 2e-69
 Identities = 101/214 (47%), Positives = 135/214 (63%), Gaps = 22/214 (10%)

Query: 1   MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
           M  +K +FLG            RA + QKC+R  GKHNDL+ VG  + HHTFFEMLGN+S
Sbjct: 43  MVPFKNVFLGLEKRPY-----KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFS 97

Query: 61  FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
           FGDYFK EAIE+AWE +T+V +LP ++LY + +  D         EA  IW +   +P+ 
Sbjct: 98  FGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSE 149

Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178
           R+   G +DNFW+MGD GPCGP SEI+ DR             D   +EIWN+VF+Q+NR
Sbjct: 150 RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNR 202

Query: 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNY 212
           + +G L PLP  ++DTG+G ER+ S+LQ K SN+
Sbjct: 203 DENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query904
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 100.0
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.96
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.95
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.94
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.83
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.24
d1j5wa_281 Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo 95.15
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=655.85  Aligned_cols=192  Identities=53%  Similarity=1.022  Sum_probs=184.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCHHC
Q ss_conf             99886554478799986665665443344312489888877878888751011100555455443898999999970200
Q 002583            1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV   80 (904)
Q Consensus         1 M~qfk~~flg~~~~~~~~~~~~r~~~~QkCiR~~gkhnDl~~VG~~~rH~T~FeMlGn~sfgdYfk~eai~~a~e~lt~~   80 (904)
                      ||||||||+|.++|+.     +|+|++|||||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++
T Consensus        43 M~~Fkp~flG~~~p~~-----~r~~~~QkCiR~~gk~nDld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~  117 (236)
T d1riqa2          43 MVPFKNVFLGLEKRPY-----KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEV  117 (236)
T ss_dssp             TGGGHHHHTTSSCCSC-----SEEEEEEEEECEETTEECTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             0222666467645677-----76444321401167430223138765311055543520138602888999999998888


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             3889996399996799768999967899999830--99998336888778645799788868536775147998877778
Q 002583           81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV  158 (904)
Q Consensus        81 ~~~~~~~l~vT~~~~d~~~~~~~D~e~~~~w~~~--~~~~~i~~~~~~~nfW~~g~~GpcGpcsEi~~d~~~~~~~~~~~  158 (904)
                      |+|||+|||||||++        |+|++++|.+.  +|++||++++.+||||+||++||||||||||||+++..      
T Consensus       118 l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~------  183 (236)
T d1riqa2         118 LKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEY------  183 (236)
T ss_dssp             SCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCGGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTS------
T ss_pred             HCCCCCCEEEEEECC--------CHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC------
T ss_conf             515764247875157--------489988887604820044153377777240689777776534787133333------


Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             899997269842101122237999634589884446742899999981999875
Q 002583          159 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNY  212 (904)
Q Consensus       159 ~~~~~~~lEiwNlVf~q~~~~~~g~l~~L~~~~iDtG~GlERl~~vlq~~~s~y  212 (904)
                       .+++|||||||+|||||+|.++|+|.|||+|+||||||||||+||+||++|||
T Consensus       184 -~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~s~y  236 (236)
T d1riqa2         184 -EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF  236 (236)
T ss_dssp             -CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGG
T ss_pred             -CCCCCEEEEEEEEHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             -78976566311001000106898654388971658966999999985999899
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure