Citrus Sinensis ID: 004663

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------74

MSANGTGCGKEEKGNEDMEEEPAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGSVDNQTADDVKVNTNVDRLYGNHKDLKLESVDDEDKDSESVTGTNAPVDVIAKENSSTKSDGSLVHPLNQHEHVAAEERLTKIEAENGEKEEKLDDDSVVGVSANELSGTRNDGSHVHPMNPECAAVNESSSEIKAENNKMGEKLDGAAVFYASAKKLSGSKTNGSLNQLECATADERPSEVKAQNDEKREKLEDVSVDVSASKLYGTKNDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIGLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDM

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEcccccHHHHHHHHHHHHccHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEccEEEEEEEcccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEcccccccccEcccccccccccccccccccHHHHcHHHHHHHHHHHccccHHHcccccEEEEcccccccccccccccccccHHHHHccccHHHHHHHHHHccHccccccccccccccccccccccccccccccccccccHHHccccccHcccHccccccccHHHccccccccHHHHcccccHcccccccHHcccccccccccccccccccHHHHHccccccEEcccccccccccccccHHHcHHHHccccccHHHcccccccccccccccccccHccccHHHHcccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHccccccccccEccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEccccccEEEEEEEcccccEEEEEEcccccHcHEEEEcccccEEEEEcccccccccccccccEEEEEccccccccccEEEEEEccEEEEEEccccccc

msangtgcgkeekgnedmeeepapdvnmsdgetnvdvkdppfsipeknqddmssdnidlqtdnndvmsvglpsdnngsvdnqtaddvkvntnvdrlygnhkdlklesvddedkdsesvtgtnapvdviakensstksdgslvhplnqheHVAAEERLTKIeaengekeekldddsvvgvsanelsgtrndgshvhpmnpecaavnesSSEIKAENNKMGEKLDGAAVFYASAKklsgsktngslnqlecataderpsevkaqndekrekledvsvdvsasklygtkndgieshVLTLNQlefaerssdikakneekgeksddhiskndekreKLDDALVFEVSVNKlcdskndgihmhAKNQLEsaaadersletkdeddkrgdklndgvADMELTLESevkeskpevdvGYEVSkessnlsflfeppvaegdesgteDEQVAFAKEVENFYRErnlefkhpkfykeDLNLLKLWRAVIKLggydevtscklwrqvgesfnppktcttvsWTFRIFYEKALLEYEKHRmsngelplhdgsltepsriesqaagsqafgsgRARRDAAARAMQGWHskrllgsgevcqpiikeknsscttksdrqiknigllkrkkpstveHSIQVANvkatnpqldtmvidigppadwvkINVQRTIDCFEVYALVPGLLREEVhvqsdpagrlvisgqpehmdnpwgvtpfkkvvslpsridphqtsaVVTLHGQlfvrvpfeqsdm

msangtgcgkeekgnedmeeepapdvnmsdgetnvDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSdnngsvdnqtaddvkvntnvdrlygnhkdlklesvddedkdsesvtgtnapvdvIAKEnsstksdgslvhplnqhehVAAEERLTKIEaengekeekldddsvvGVSANELsgtrndgshvhpMNPECAAVNESSSEIKAENNKMGEKLDGAAVFYASAKKlsgsktngslnqlecataderpsevkaqndekrekledvsvdvsasklygtkndgieshvltlnqlefaerssdikakneekgeksddhiskndekreklddALVFEVSVNKLCDSKNDGIHMHAKnqlesaaadersletkdeddkrgdklndgvadmeltlesevkeskpevDVGYEVSkessnlsflfeppvAEGDESGTEDEQVAFAKEVENFYRernlefkhpkfykedLNLLKLWRAVIKLGGYDEVTSCKLWrqvgesfnppktcttvswTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQAAGSQAFGSGRARRDAAARAMQGwhskrllgsgevCQPIIkeknsscttksdrqiknigllkrkkpstveHSIQVanvkatnpqldTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFvrvpfeqsdm

MSANGTGCgkeekgnedmeeePAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGSVDNQTADDVKVNTNVDRLYGNHkdlklesvddedkdsesvTGTNAPVDVIAKENSSTKSDGSLVHPLNQHEHVAAEERLTKIEAENGEKEEKLDDDSVVGVSANELSGTRNDGSHVHPMNPECAAVNESSSEIKAENNKMGEKLDGAAVFYASAKKLSGSKTNGSLNQLECATADERPSEVKAQNDEKREKLEDVSVDVSASKLYGTKNDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQAAGSQAFGSGrarrdaaaraMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIGLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDM

**********************************************************************************************************************************************************************************************************************************VF***************************************************************SHVLTLN**************************************ALVFEVSVNKLC**********************************************************************************************AFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYE*****************************************************LLGSGEVCQPII********************************IQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISG****MDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP******

*****************************DGETNVDVKDPPFS*************IDLQTDNNDVMSVGLPS*N******QTADDVKVNTNVDRLYGNHKDL***************************************************************************************************************************VFYA*********************************************************************************************************************************************************************************************************************FAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRM*************************************************************************************************************************INVQRTIDCF*******************************************KVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQ***

**************************NMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGSVDNQTADDVKVNTNVDRLYGNHKDLKLES************GTNAPVDVIAKENSSTKSDGSLVHPLNQHEHVAAEERLTKIEAENG*********SVVGVSANELSGTRNDGSHVHPMNPECAAVNESSSEIKAENNKMGEKLDGAAVFYASAKKLSGSKTNGSLNQLECATA**********************VDVSASKLYGTKNDGIESHVLTLNQLEFAERSSDI*****************NDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKNQL******************RGDKLNDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPV**********EQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRI**************************WHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIGLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDM

******************************************************************************************************************************************************VA*EERLTKIE*************SVVGVS*************************************************************************************************************************************************************L*F***************************************************************************************PVAEG*ESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSN*E***************************************************VCQP*********************************************QLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFE****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSANGTGCGKEEKGNEDMEEEPAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGSVDNQTADDVKVNTNVDRLYGNHKDLKLESVDDEDKDSESVTGTNAPVDVIAKENSSTKSDGSLVHPLNQHExxxxxxxxxxxxxxxxxxxxxLDDDSVVGVSANELSGTRNDGSHVHPMNPECAAVNESSSEIKAENNKMGEKLDGAAVFYASAKKLSGSKTNGSLNQLECATADERPSEVKAQNDEKREKLEDVSVDVSASKLYGTKNDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIGLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		738	2.2.26 [Sep-21-2011]
Q940Y3		786	AT-rich interactive domai	yes	no	0.413	0.388	0.669	1e-115
Q0WNR6		434	AT-rich interactive domai	no	no	0.406	0.691	0.672	1e-111
C0SUW7		398	AT-rich interactive domai	no	no	0.407	0.756	0.612	1e-102
O02326		467	AT-rich interactive domai	yes	no	0.094	0.149	0.375	5e-08
Q68CP9		1835	AT-rich interactive domai	yes	no	0.115	0.046	0.313	1e-07
Q4H3P5		571	Protein dead ringer homol	yes	no	0.115	0.148	0.313	8e-07
Q4LE39		1312	AT-rich interactive domai	no	no	0.126	0.070	0.305	2e-06
Q62431		601	AT-rich interactive domai	no	no	0.115	0.141	0.325	2e-06
Q9JKB5		1228	AT-rich interactive domai	no	no	0.139	0.083	0.280	3e-06
A2CG63		1314	AT-rich interactive domai	no	no	0.139	0.078	0.280	3e-06

>sp\|Q940Y3\|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1	Back alignment and function desciption

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/315 (66%), Positives = 249/315 (79%), Gaps = 10/315 (3%)

Query: 422 SFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKL 481
           SFL +   ++G+ESGTE++Q AF KE+++F+RERN++FK PKFY E LN LKLWRAV +L
Sbjct: 479 SFLLDD-ASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRL 537

Query: 482 GGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSL 541
           GGYD+VT  KLWRQVGESF PPKTCTTVSWTFR FYEKALLEYE+H++S GEL +     
Sbjct: 538 GGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLE 597

Query: 542 TEPSRIESQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKS 601
            EP  I++QA+     GSGRARRDAA+RAMQGWHS+RL G+GEV  P IK+KN     K 
Sbjct: 598 LEPMNIDNQAS-----GSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKR 652

Query: 602 DRQIKNI-GLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCF 660
           ++QI    GLLKRK+    EH  + A +  +   LD  V+D+GPPADWVKINVQRT DCF
Sbjct: 653 EKQIGTTPGLLKRKR--AAEHGAKNA-IHVSKSMLDVTVVDVGPPADWVKINVQRTQDCF 709

Query: 661 EVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAV 720
           EVYALVPGL+REEV VQSDPAGRLVISG+PE+  NPWG TPFKKVVSLP+RIDPH TSAV
Sbjct: 710 EVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAV 769

Query: 721 VTLHGQLFVRVPFEQ 735
           VTL+GQLFVRVP EQ
Sbjct: 770 VTLNGQLFVRVPLEQ 784

Arabidopsis thaliana (taxid: 3702)

>sp\|Q0WNR6\|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=2 SV=1	Back alignment and function description

>sp\|C0SUW7\|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis thaliana GN=ARID6 PE=2 SV=1	Back alignment and function description

>sp\|O02326\|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1 OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3	Back alignment and function description

>sp\|Q68CP9\|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2	Back alignment and function description

>sp\|Q4H3P5\|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2 PE=2 SV=1	Back alignment and function description

>sp\|Q4LE39\|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens GN=ARID4B PE=1 SV=2	Back alignment and function description

>sp\|Q62431\|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus GN=Arid3a PE=1 SV=1	Back alignment and function description

>sp\|Q9JKB5\|ARI4B_RAT AT-rich interactive domain-containing protein 4B OS=Rattus norvegicus GN=Arid4b PE=2 SV=1	Back alignment and function description

>sp\|A2CG63\|ARI4B_MOUSE AT-rich interactive domain-containing protein 4B OS=Mus musculus GN=Arid4b PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		738
255546686		515	transcription factor, putative [Ricinus	0.493	0.706	0.736	1e-156
359476996		578	PREDICTED: AT-rich interactive domain-co	0.632	0.807	0.561	1e-138
255575245		656	transcription factor, putative [Ricinus	0.449	0.506	0.696	1e-131
356538419		528	PREDICTED: uncharacterized protein LOC10	0.426	0.596	0.704	1e-127
115468996		461	Os06g0622300 [Oryza sativa Japonica Grou	0.432	0.691	0.678	1e-127
218198568		461	hypothetical protein OsI_23739 [Oryza sa	0.432	0.691	0.678	1e-126
296088504		288	unnamed protein product [Vitis vinifera]	0.388	0.996	0.770	1e-126
449456893		510	PREDICTED: AT-rich interactive domain-co	0.421	0.609	0.747	1e-126
449525987		510	PREDICTED: AT-rich interactive domain-co	0.421	0.609	0.747	1e-126
356561039		529	PREDICTED: uncharacterized protein LOC10	0.565	0.788	0.571	1e-125

>gi\|255546686\|ref\|XP_002514402.1\| transcription factor, putative [Ricinus communis] gi\|223546499\|gb\|EEF47998.1\| transcription factor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/372 (73%), Positives = 313/372 (84%), Gaps = 8/372 (2%)

Query: 369 DERSLETKDEDDKRGDKLNDGVADMELTLESEVKE--SKPEVDVGYEVSKESSNLSFLFE 426
           DE+S ET+ ED K      + +   +L+L +E+ +  SKPE    +E    +SN SFL +
Sbjct: 150 DEKSSETQVEDVK------NAMTKTDLSLNTEITKDMSKPEFHQEHEKIVSTSNKSFLVD 203

Query: 427 PPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDE 486
           P + EG ESGTEDEQ AFAKEVE FYRE NLE+K PKFYKE+LNLLKLWRAVIKLGGY++
Sbjct: 204 PSLGEGYESGTEDEQAAFAKEVERFYRESNLEYKAPKFYKEELNLLKLWRAVIKLGGYEQ 263

Query: 487 VTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSR 546
           VTSCKLWRQVGESF PPKTCTTVSWTFRIFYEKALLEYEKH+M NGELP  DG LTEP R
Sbjct: 264 VTSCKLWRQVGESFRPPKTCTTVSWTFRIFYEKALLEYEKHKMRNGELPFSDGPLTEPIR 323

Query: 547 IESQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIK 606
           +E+QA GSQA GSGRARRDAAARAM+GWHS+RLLG+G+VC PIIK+KN + T K D+ +K
Sbjct: 324 VENQAPGSQALGSGRARRDAAARAMEGWHSQRLLGNGQVCHPIIKDKNLNSTPKGDKLLK 383

Query: 607 NIGLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALV 666
             GLLKRKKPS+VE S+ V ++KA  PQ+D+MVIDIGPPADWVKINVQ+T DCFE+YALV
Sbjct: 384 TNGLLKRKKPSSVERSVLVPHMKAMKPQVDSMVIDIGPPADWVKINVQKTNDCFEIYALV 443

Query: 667 PGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQ 726
           PGLLREEVHVQSDPAGRL+ISG PE +DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQ
Sbjct: 444 PGLLREEVHVQSDPAGRLIISGNPEQVDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQ 503

Query: 727 LFVRVPFEQSDM 738
           LFVRVPFE SD+
Sbjct: 504 LFVRVPFELSDI 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359476996\|ref\|XP_002263596.2\| PREDICTED: AT-rich interactive domain-containing protein 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255575245\|ref\|XP_002528526.1\| transcription factor, putative [Ricinus communis] gi\|223532028\|gb\|EEF33838.1\| transcription factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538419\|ref\|XP_003537701.1\| PREDICTED: uncharacterized protein LOC100791081 [Glycine max]	Back alignment and taxonomy information

>gi|115468996|ref|NP_001058097.1| Os06g0622300 [Oryza sativa Japonica Group] gi|51090844|dbj|BAD35372.1| DNA-binding protein-like [Oryza sativa Japonica Group] gi|113596137|dbj|BAF20011.1| Os06g0622300 [Oryza sativa Japonica Group] gi|215704475|dbj|BAG93909.1| unnamed protein product [Oryza sativa Japonica Group] gi|215706411|dbj|BAG93267.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635902|gb|EEE66034.1| hypothetical protein OsJ_22009 [Oryza sativa Japonica Group]

Back alignment and taxonomy information

>gi\|218198568\|gb\|EEC80995.1\| hypothetical protein OsI_23739 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|296088504\|emb\|CBI37495.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449456893\|ref\|XP_004146183.1\| PREDICTED: AT-rich interactive domain-containing protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449525987\|ref\|XP_004169997.1\| PREDICTED: AT-rich interactive domain-containing protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356561039\|ref\|XP_003548793.1\| PREDICTED: uncharacterized protein LOC100803374 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		738
TAIR\|locus:2827523		786	AT2G17410 [Arabidopsis thalian	0.707	0.664	0.447	1.9e-106
TAIR\|locus:2037345		398	AT1G20910 [Arabidopsis thalian	0.457	0.849	0.533	3.8e-94
ZFIN\|ZDB-GENE-081015-2		1413	rpgrb "retinitis pigmentosa GT	0.592	0.309	0.221	8.2e-11
UNIPROTKB\|F1SU48		597	ARID5A "Uncharacterized protei	0.196	0.242	0.278	1.2e-07
DICTYBASE\|DDB_G0291444		447	DDB_G0291444 [Dictyostelium di	0.379	0.626	0.223	2.6e-07
UNIPROTKB\|Q3SWY1		592	ARID5A "AT-rich interactive do	0.153	0.190	0.307	4.2e-07
UNIPROTKB\|G3MY61		637	ARID5A "AT-rich interactive do	0.153	0.177	0.307	4.7e-07
ZFIN\|ZDB-GENE-081028-53		1249	ch1073-321c8.1 "ch1073-321c8.1	0.449	0.265	0.226	5.4e-07
DICTYBASE\|DDB_G0293562		527	DDB_G0293562 [Dictyostelium di	0.399	0.559	0.238	7.4e-07
WB\|WBGene00000476		467	cfi-1 [Caenorhabditis elegans	0.226	0.357	0.281	7.8e-07

TAIR\|locus:2827523 AT2G17410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 253/565 (44%), Positives = 341/565 (60%)

Query:   191 GSHVH-PMNPECAAVNESSSEI-KAENNKMGEKLDGA-AVFYASAKKLSGSKTNGSLNQL 247
             G H   P NP+   V E++  I + E N +    DG+ AV +    K    K        
Sbjct:   243 GEHKEIPANPDTKVVEENNDRIDEGEANNLNLAGDGSGAVDHDYLTKTELDKVLEVPGSE 302

Query:   248 ECATADERPSEVKAQNDEKREK-LEDVSVDV-----SASKLYGTKNDGIESHVLTLNQLE 301
               +  ++RPSE  ++     EK LE  +V++       S +      G   +V+++  L 
Sbjct:   303 TISKLEDRPSEHLSETSMNVEKELEMPAVEILPDNDKNSDVLAVGVSGDSDNVVSV--LP 360

Query:   302 FAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKN 361
              ++ SSD      ++G  + D     D K +  D  LV + +V+    + N   H+ A  
Sbjct:   361 ASQTSSD-----RDEGMITVDAEPTEDMKLDVPDSKLVTDTTVDS---TNNKDAHVEANT 412

Query:   362 QLESAAADERSLETKDEDDKRGD-KLNDGVADMELTLESEVKESKPEVDVG-YEVSKES- 418
             + +  ++   +L   D +++    K   G       ++SE + S  +++ G +++ +   
Sbjct:   413 ERQDNSS---ALVLNDANNESAPVKRVPGPYVASSNIKSEARGSG-DLNNGVHKIVRTPP 468

Query:   419 -------SNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNL 471
                    +  SFL +   ++G+ESGTE++Q AF KE+++F+RERN++FK PKFY E LN 
Sbjct:   469 VFDGTMRAKRSFLLDD-ASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNC 527

Query:   472 LKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSN 531
             LKLWRAV +LGGYD+VT  KLWRQVGESF PPKTCTTVSWTFR FYEKALLEYE+H++S 
Sbjct:   528 LKLWRAVTRLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSE 587

Query:   532 GELPLHDGSLTEPSRIESQAAGSQAFGSGXXXXXXXXXXMQGWHSKRLLGSGEVCQPIIK 591
             GEL +      EP  I++QA+GS     G          MQGWHS+RL G+GEV  P IK
Sbjct:   588 GELQIPLPLELEPMNIDNQASGS-----GRARRDAASRAMQGWHSQRLNGNGEVSDPAIK 642

Query:   592 EKNSSCTTKSDRQIKNI-GLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVK 650
             +KN     K ++QI    GLLKRK+ +  EH  + A +  +   LD  V+D+GPPADWVK
Sbjct:   643 DKNLVLHQKREKQIGTTPGLLKRKRAA--EHGAKNA-IHVSKSMLDVTVVDVGPPADWVK 699

Query:   651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPS 710
             INVQRT DCFEVYALVPGL+REEV VQSDPAGRLVISG+PE+  NPWG TPFKKVVSLP+
Sbjct:   700 INVQRTQDCFEVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPT 759

Query:   711 RIDPHQTSAVVTLHGQLFVRVPFEQ 735
             RIDPH TSAVVTL+GQLFVRVP EQ
Sbjct:   760 RIDPHHTSAVVTLNGQLFVRVPLEQ 784

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

TAIR\|locus:2037345 AT1G20910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081015-2 rpgrb "retinitis pigmentosa GTPase regulator b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SU48 ARID5A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291444 DDB_G0291444 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SWY1 ARID5A "AT-rich interactive domain-containing protein 5A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|G3MY61 ARID5A "AT-rich interactive domain-containing protein 5A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081028-53 ch1073-321c8.1 "ch1073-321c8.1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00000476 cfi-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00005994001	SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (578 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		738
smart00501		93	smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interac	1e-26
pfam01388		90	pfam01388, ARID, ARID/BRIGHT DNA binding domain	9e-26
smart01014		88	smart01014, ARID, ARID/BRIGHT DNA binding domain	3e-23
cd00298		80	cd00298, ACD_sHsps_p23-like, This domain family in	1e-06
cd06464		88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	2e-05

>gnl\|CDD\|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain) domain	Back alignment and domain information

 Score =  103 bits (260), Expect = 1e-26
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 440 EQVAFAKEVENFYRERNLE-FKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
           E+V F   +  F  ER     K P    + L+L +L+R V + GGYD+VT  K W+++  
Sbjct: 2   ERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIAR 61

Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
               P T T+ + + R  YE+ LL YE+ 
Sbjct: 62  ELGIPDTSTSAASSLRKHYERYLLPYERF 90

DNA-binding domain containing a helix-turn-helix structure. Length = 93

>gnl\|CDD\|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain	Back alignment and domain information

>gnl\|CDD\|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain	Back alignment and domain information

>gnl\|CDD\|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>gnl\|CDD\|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		738
KOG2744		512	consensus DNA-binding proteins Bright/BRCAA1/RBP1	99.94
smart00501		93	BRIGHT BRIGHT, ARID (A/T-rich interaction domain)	99.92
PF01388		92	ARID: ARID/BRIGHT DNA binding domain; InterPro: IP	99.9
cd06479		81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.69
cd06472		92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.69
cd06497		86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.67
cd06475		86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.65
cd06498		84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.65
cd06476		83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.64
cd06478		83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.62
PRK10743		137	heat shock protein IbpA; Provisional	99.61
cd06471		93	ACD_LpsHSP_like Group of bacterial proteins contai	99.61
PRK11597		142	heat shock chaperone IbpB; Provisional	99.61
COG0071		146	IbpA Molecular chaperone (small heat shock protein	99.6
cd06481		87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.57
cd06482		87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.55
cd06470		90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.55
cd06477		83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.54
cd06526		83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.53
PF00011		102	HSP20: Hsp20/alpha crystallin family This prints e	99.53
cd06464		88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.46
cd06480		91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.2
KOG2510		532	consensus SWI-SNF chromatin-remodeling complex pro	99.16
cd00298		80	ACD_sHsps_p23-like This domain family includes the	99.04
PF08169		96	RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR01260	99.02
KOG0710		196	consensus Molecular chaperone (small heat-shock pr	99.01
cd06469		78	p23_DYX1C1_like p23_like domain found in proteins	98.77
KOG3591		173	consensus Alpha crystallins [Posttranslational mod	98.65
cd06463		84	p23_like Proteins containing this p23_like domain	98.38
PF05455		177	GvpH: GvpH; InterPro: IPR008633 This family consis	97.9
cd06466		84	p23_CS_SGT1_like p23_like domain similar to the C-	97.65
cd06465		108	p23_hB-ind1_like p23_like domain found in human (h	96.44
PF04969		79	CS: CS domain; InterPro: IPR017447 The function of	96.27
cd06489		84	p23_CS_hSgt1_like p23_like domain similar to the C	94.64
cd06493		85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	94.31
cd06468		92	p23_CacyBP p23_like domain found in proteins simil	94.01
cd06467		85	p23_NUDC_like p23_like domain of NUD (nuclear dist	93.61
PF08190		328	PIH1: pre-RNA processing PIH1/Nop17	91.93
cd06488		87	p23_melusin_like p23_like domain similar to the C-	89.72
cd06494		93	p23_NUDCD2_like p23-like NUD (nuclear distribution	86.07

>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]	Back alignment and domain information

Probab=99.94  E-value=2.3e-27  Score=258.59  Aligned_cols=315  Identities=20%  Similarity=0.185  Sum_probs=237.8

Q ss_pred             CccccCC-CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCC-CCeeCCeecchhHHHHHHHhcCCchhhccCCchHHHHh
Q 004663          421 LSFLFEP-PVAEGDESGTEDEQVAFAKEVENFYRERNLEFK-HPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE  498 (738)
Q Consensus       421 ~s~lld~-e~~e~deegt~eERe~FLdqL~eFmeeRGtPfK-~PvIGGKpLDLYKLYraV~krGGYdqVT~nKlWrEVAe  498 (738)
                      +.|.... .+...+.+..+..++.||+.|+.||+.||++|+ +|+|+|++||||.||.+|+++||++.|+..++|++|..
T Consensus       143 ~~~~~~~s~~~~~~~e~~~~~~eeF~~dl~~f~~~~~~~~~~iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~  222 (512)
T KOG2744|consen  143 KTKRARRSNLPLYETEGVPKSSEEFMEDLRRFMKKRGTKVKSIPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVID  222 (512)
T ss_pred             cccccccccccccccccccccHHHHHHHHHHHHHHhCCcceeccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhc
Confidence            3344433 245667777788999999999999999999995 99999999999999999999999999999999999999


Q ss_pred             hcCCCC-CCCcHHHHHHHHHHHhHHHHHhhhhc--CCCcccCCCCCC-CcccccccccCccCCCC-chhh---------h
Q 004663          499 SFNPPK-TCTTVSWTFRIFYEKALLEYEKHRMS--NGELPLHDGSLT-EPSRIESQAAGSQAFGS-GRAR---------R  564 (738)
Q Consensus       499 eLGLP~-tcTSAS~sLRq~YEKYLLpYEr~lr~--~GElPlP~ssl~-eps~veke~~G~q~~gs-GRAR---------R  564 (738)
                      .|.+|. ++|+++|.||++|+|||++||+.+..  ++-+..|..... ......++.+-+...++ ++..         -
T Consensus       223 ~l~~pt~tiTsaaf~lr~~y~K~L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE~~~~~~~~~~~~~~~~~~~~~~~~  302 (512)
T KOG2744|consen  223 GLNFPTPTITSAAFTLRKQYLKLLFEYECEFEKNRHVPLNSPAELSEEASSSNRREGRRHELSPSKEFQANGPSEEEPAE  302 (512)
T ss_pred             cccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccccccccccccccccccCcchhhccCCcccccccc
Confidence            999999 99999999999999999999999864  355555554444 33333444433333333 4432         3


Q ss_pred             HHHHhhcCCCccccccCCCCCCCCccccccCcccccccccccccC------------ccccCCCCchhhh----hHh---
Q 004663          565 DAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIG------------LLKRKKPSTVEHS----IQV---  625 (738)
Q Consensus       565 dAaAramqGwHsqrllG~Gev~~p~iKdk~~~~~~krek~lk~ig------------~~k~k~~~~~~~~----~~~---  625 (738)
                      .+||.+|.||+-++|+..+.+..++||+......+. -..+|..+            ...++..-.+...    ...   
T Consensus       303 ~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~-~~~~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~  381 (512)
T KOG2744|consen  303 AEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPD-LNLFKVFRLECHQGGDSNIPSALQWKQVAKDLGLLPNLNSAAS  381 (512)
T ss_pred             cccchhhhccccccCceeccCcchhccCccccccCc-ccccccccceeeccCcCcCCchhheeccccccccccccccccc
Confidence            789999999999999999999999999986532222 11111111            0011110000000    000   


Q ss_pred             ----hccccCCCC---------CCceeeecCCCCceEEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCC
Q 004663          626 ----ANVKATNPQ---------LDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEH  692 (738)
Q Consensus       626 ----~~~~~~~~q---------~d~~v~d~gppadwVkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~  692 (738)
                          ...+..+..         .-..+.+..|...||..+.++..++++..++.|+..+.+|.|+++..|...+-.....
T Consensus       382 ~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~e~~~~~~al~lt~~~~~~~~~~~~e~ng~~~~gvl~~q  461 (512)
T KOG2744|consen  382 SNTKLAYKKSLSENEEYCSINSVNIEFPEALPKEIKVNKQLRELENLLEALALTPSNAKTEIKVQCEENGTGYSGVLFAQ  461 (512)
T ss_pred             cccccccchhhccccccchhhhccccccccccchhhhccchHHHHHhHHHhccCccccccceeeecccccccccceeeec
Confidence                000011111         1334567889999999999999999999999999999999999999888888888777


Q ss_pred             CCCC---CCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeecccC
Q 004663          693 MDNP---WGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQS  736 (738)
Q Consensus       693 ~e~e---rg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk~~~  736 (738)
                      ...+   |...+++++.+-+...+++.++|.....|-.++.+++++.
T Consensus       462 ~~~~~~~~~~~p~~~~~s~~~~~~~~n~~~~~~~~~~~~~~~~~~~~  508 (512)
T KOG2744|consen  462 IELPLPSPISAPPSHVNSTSGSSNPENISASHSPLSETYLATPFAHT  508 (512)
T ss_pred             ccccccCCCcCccccccCCCCCCCccccccccCCCccccccCCCccc
Confidence            7665   8888999999999999999999999999999999998764

>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain	Back alignment and domain information

>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans	Back alignment and domain information

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins	Back alignment and domain information

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins	Back alignment and domain information

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)	Back alignment and domain information

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins	Back alignment and domain information

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)	Back alignment and domain information

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins	Back alignment and domain information

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20	Back alignment and domain information

>PRK10743 heat shock protein IbpA; Provisional	Back alignment and domain information

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	Back alignment and domain information

>PRK11597 heat shock chaperone IbpB; Provisional	Back alignment and domain information

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins	Back alignment and domain information

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins	Back alignment and domain information

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins	Back alignment and domain information

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins	Back alignment and domain information

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry	Back alignment and domain information

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21	Back alignment and domain information

>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]	Back alignment and domain information

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family []	Back alignment and domain information

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1	Back alignment and domain information

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1	Back alignment and domain information

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []	Back alignment and domain information

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)	Back alignment and domain information

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins	Back alignment and domain information

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown	Back alignment and domain information

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins	Back alignment and domain information

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins	Back alignment and domain information

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)	Back alignment and domain information

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins	Back alignment and domain information

>PF08190 PIH1: pre-RNA processing PIH1/Nop17	Back alignment and domain information

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins	Back alignment and domain information

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		738
2kk0_A		145	Solution Structure Of Dead Ringer-Like Protein 1 (A		3e-05
1ig6_A		107	Human Mrf-2 Domain, Nmr, 11 Structures Length = 107		2e-04
1c20_A		128	Solution Structure Of The Dna-Binding Domain From T		5e-04

>pdb|2KK0|A Chain A, Solution Structure Of Dead Ringer-Like Protein 1 (At-Rich Interactive Domain-Containing Protein 3a) From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4394c Length = 145

Back alignment and structure

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 444 FAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
           F  ++ +F ++R       P   K+ L+L  L+  V + GG  EV + KLWR++ +  N 
Sbjct: 38  FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 97
Query: 503 PKTCTTVSWTFRIFYEKALLEY--EKHRMSN 531
           P + T+ ++T R  Y K L  Y  EK  +SN
Sbjct: 98  PTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128

PyMOL of 2kk0

>pdb|1IG6|A Chain A, Human Mrf-2 Domain, Nmr, 11 Structures Length = 107

Back alignment and structure

>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The Dead Ringer Protein Length = 128

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		738
2rq5_A		121	Protein jumonji; developmental protein, nucleus, r	8e-25
1ig6_A		107	MRF-2, modulator recognition factor 2; DNA binding	2e-23
2lm1_A		107	Lysine-specific demethylase LID; structural genomi	5e-23
2jxj_A		96	Histone demethylase jarid1A; ARID domain, chromati	1e-22
2cxy_A		125	BAF250B subunit, HBAF250B; DNA-binding domain, str	2e-22
2eqy_A		122	RBP2 like, jumonji, at rich interactive domain 1B;	6e-22
2jrz_A		117	Histone demethylase jarid1C; bright/ARID domain, h	1e-21
2kk0_A		145	AT-rich interactive domain-containing protein 3A;	5e-21
1c20_A		128	DEAD ringer protein; DNA-binding domain, ARID, AT-	2e-20
1kkx_A		123	Transcription regulatory protein ADR6; ARID, DNA-b	5e-20
2li6_A		116	SWI/SNF chromatin-remodeling complex subunit SWI1;	9e-18
2klr_A		175	Alpha-crystallin B chain; protein, dimer, oligomer	1e-05
2y1y_A		90	Alpha-crystallin B chain,; small heat shock protei	4e-05
2wj5_A		101	Heat shock protein beta-6; chaperone, disulfide bo	5e-05
3q9p_A		85	Heat shock protein beta-1; alpha-crystallin domain	7e-05
3l1e_A		106	Alpha-crystallin A chain; lens transparency, polyd	9e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3gla_A		100	Low molecular weight heat shock protein; HSPA, SHP	4e-04

>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Length = 121	Back alignment and structure

 Score = 99.2 bits (247), Expect = 8e-25
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 442 VAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESF 500
           V     ++   R + +     P     +L+L   +R + ++GG  +VT  K W ++ +  
Sbjct: 14  VQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADML 73

Query: 501 NPPKTCTTVSWTFRIFYEKALLEYEK 526
             PKT        +  Y + LL Y+ 
Sbjct: 74  RIPKTAQDRLAKLQEAYCQYLLSYDS 99

PyMOL of 2rq5

>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Length = 107	Back alignment and structure

>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Length = 107	Back alignment and structure

>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Length = 96	Back alignment and structure

>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Length = 125	Back alignment and structure

>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 122	Back alignment and structure

>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Length = 117	Back alignment and structure

>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 145	Back alignment and structure

>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Length = 128	Back alignment and structure

>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Length = 123	Back alignment and structure

>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 116	Back alignment and structure

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175	Back alignment and structure

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90	Back alignment and structure

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101	Back alignment and structure

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85	Back alignment and structure

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		738
d1ig6a_		107	a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo	5e-25
d1c20a_		128	a.4.3.1 (A:) DNA-binding domain from the dead ring	1e-24
d1ryua_		120	a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1	2e-23
d1kkxa_		102	a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {	3e-19
d1shsa_		115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	0.004

>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: MRF-2 DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (244), Expect = 5e-25
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 440 EQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
           ++ AF   +  + +ER    +  P    + +NL  +++A  KLGGY+ +T+ + W+ + +
Sbjct: 3   DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYD 62

Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPL 536
                   T+ +   R  YE+ +L YE+      + PL
Sbjct: 63  ELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPL 100

PyMOL of d1ig6a_

>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128	Back information, alignment and structure

>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 120	Back information, alignment and structure

>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 102	Back information, alignment and structure

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		738
d1ryua_		120	SWI-SNF complex protein p270, SMARCF1 {Human (Homo	99.95
d1ig6a_		107	MRF-2 DNA-binding domain {Human (Homo sapiens) [Ta	99.94
d1c20a_		128	DNA-binding domain from the dead ringer protein {F	99.93
d1kkxa_		102	Transcription regulator Adr6 (Swi1) {Baker's yeast	99.89
d1gmea_		150	Small heat shock protein {Wheat (Triticum aestivum	99.65
d1shsa_		115	Small heat shock protein {Archaeon Methanococcus j	99.64
d1rl1a_		92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	96.56
d1wh0a_		134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	92.97

>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: ARID-like
family: ARID domain
domain: SWI-SNF complex protein p270, SMARCF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-28  Score=188.92  Aligned_cols=112  Identities=22%  Similarity=0.387  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCC
Q ss_conf             47998899999884899999999999998339979-99834783223227899998608710213687167887431999
Q 004663          425 FEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPP  503 (738)
Q Consensus       425 ld~e~~e~deeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLP  503 (738)
                      .+.++....+.+...++..|++.|++||++||+|+ ++|+|+|++||||+||++|+++|||++|+.+++|.+|++.|++|
T Consensus         5 ~~~~~~~L~e~~~~~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~   84 (120)
T d1ryua_           5 TNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG   84 (120)
T ss_dssp             CSCCCCGGGCSSSCHHHHHHHHHHHHHHHHTTSCSSCCSCCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEECCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCC
T ss_conf             25899999806972779999999999999779978768818984456999999999815887606405099999984999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             98885899999999995799996462089866689
Q 004663          504 KTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHD  538 (738)
Q Consensus       504 kTcTSAS~sLKqiYeKYLLpYEr~lr~~GE~PlP~  538 (738)
                      . ++++++.||++|++||++||+++. .|+.|||.
T Consensus        85 ~-~~~~~~~Lk~~Y~r~L~~yE~~~~-~~~~~p~~  117 (120)
T d1ryua_          85 T-SSSAASSLKKQYIQCLYAFECKIE-RGEDPPPD  117 (120)
T ss_dssp             C-SSHHHHHHHHHHHHHTTTTTTTTT-TTTSCCCS
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf             8-787999999999999999999987-47999700

PyMOL of d1ryua_

>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure