Citrus Sinensis ID: 006917

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----
MGDSEQEPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEAKRLAEHLKKTKISVPLN
ccccccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccEEEcccccccccccccccccHHHccccccccccccccccccccccEEEcccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccHHHHHHHccccHHHHHHcccccccEEEEEEccccccccccHHcHHccccccccccccEEEccccEEEcccccccccccEEEcHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccccccccEEEEEccccccccccccccEEEEEHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccEEccHHHEEEEccccccccccEEccEccccccEccHHHcEEEEEcccccccEEEEEEEEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEccccccccccccccccEEEcHHHHHHHHHHHHHHcccHHHHHHcccccccEEEEEEccccccEEEEEEHHHHHHHcccccccccEcccEEEEEccccEccccccEEcHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHccccccHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHcHcccccccccccccccccccEccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHccEEEccc
mgdseqepdgernhrvaklpvpgkrnilitsalpyvnnvphlgNIIGCVLSADVFARYCRlrgynalyicgtdeygtatetkameencttqqICDKYYAIHKAVYNWFnisfdefgrtstpqQTEICQAIFKKLLennwlseyttqQLYCDTCKRFLAdrlvegscptlgcnydsargdqcekcgkllnptelkdprckvcqatpkirdtdhlflELPLIKDKLEEYINKMSvsgswsqnaIQGTYAWLkdglkprcitrdlkwgvpvphekfkdKVFYVWfdapigyisitscytpdweewwknpenVALYQFmgkdnapfhtvmfpstllgteenWTLMKTISVTEYLNyeagkfskskgvgvfgndvkdtnipaEVWRYYLITnrpevsdtlFTWEDFQAKLNTELLNNLGNFVNRVLSFiakppgrgygsiipdspkadlhpsTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKlynedqgscsivIRTSVGLVYLLACllepfmpsfsLEVLkqlnvptetkfslsdengdlerarkpweilpaghrigmssplfkelkdEDVRFFREKFAGSQADRAVQAEAEAKRLAEHLKKtkisvpln
mgdseqepdgernhrvaklpvpgkRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKllnptelkdprckvcqatpkirdtdhlfLELPLIKDKLEEYINKMsvsgswsqnAIQGTYAWLKDGLKPRCITRdlkwgvpvphekfkdKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKfskskgvgvfgndvkdtnipaEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTetkfslsdengdlerarkpweilpaghrigmssplFKELKDEDVRFFREKFAGSQADRAVQAEAEAKRLAehlkktkisvpln
MGDSEQEPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEAKRLAEHLKKTKISVPLN
********************VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII*****************KISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPT*******************WEILPAGHRIGM***LFKEL***DVRFFR***********************************
**************************ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRF*************************************
*************HRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEAKRLAEHLKKTKISVPLN
****************AKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAV*****AKRLAEHLKKTKISVPLN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDSEQEPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRxxxxxxxxxxxxxxxxxxxxxVPLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query625 2.2.26 [Sep-21-2011]
Q9SVN5 797 Probable methionine--tRNA yes no 0.972 0.762 0.775 0.0
Q9ZTS1 801 Probable methionine--tRNA yes no 0.958 0.747 0.760 0.0
Q54X95 736 Probable methionine--tRNA yes no 0.892 0.758 0.558 0.0
Q68FL6902 Methionine--tRNA ligase, yes no 0.928 0.643 0.528 0.0
Q6PF21905 Methionine--tRNA ligase, N/A no 0.907 0.626 0.539 0.0
Q2T9L8898 Methionine--tRNA ligase, yes no 0.902 0.628 0.525 0.0
P56192900 Methionine--tRNA ligase, yes no 0.889 0.617 0.533 0.0
P00958751 Methionine--tRNA ligase, yes no 0.889 0.740 0.515 1e-179
Q9UUF2782 Probable methionine--tRNA yes no 0.899 0.718 0.525 1e-179
Q20970 917 Methionine--tRNA ligase, yes no 0.924 0.630 0.491 1e-178
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1 Back     alignment and function desciption
 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/615 (77%), Positives = 535/615 (86%), Gaps = 7/615 (1%)

Query: 7   EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNA 66
           E DG+ +    KLP+PGKRNILITSALPYVNNVPHLGNIIGCVLSADV+ARYCRLRGYNA
Sbjct: 2   EDDGKSS---PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNA 58

Query: 67  LYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEI 126
           +YICGTDEYGTATETKA+EENCT ++ICDKY+AIHK VY+WF ISFD+FGRTSTP+QTE+
Sbjct: 59  IYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEV 118

Query: 127 CQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGK 186
           CQAIF KL +N WLSE T QQLYCDTCK+FLADRLVEGSCP  GCNYDSARGDQCEKCGK
Sbjct: 119 CQAIFNKLWDNKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGK 178

Query: 187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY 246
           LLNPTELKDP+CKVCQ TP+IRDTDHLF+ELPL+KD+LE YI K SV+GSWSQNAIQ T 
Sbjct: 179 LLNPTELKDPKCKVCQNTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTN 238

Query: 247 AWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNP 306
           AWL+DGL+ RCITRDLKWGVPVPHEK+KDKVFYVWFDAPIGY+SITSCYT +WE+WWKNP
Sbjct: 239 AWLRDGLRQRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTSEWEKWWKNP 298

Query: 307 ENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVF 366
           ENV LYQFMGKDN PFHTVMFPST LGTEENWTLMKTISVTEYLNYE GKFSKSKGVGVF
Sbjct: 299 ENVELYQFMGKDNVPFHTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVF 358

Query: 367 GNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426
           GNDVKDTNIP EVWRYYL+TNRPEVSDT F+W D QAKLN ELL+NLGNFVNRVLSFIAK
Sbjct: 359 GNDVKDTNIPVEVWRYYLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAK 418

Query: 427 PPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGN 486
           P   GYGS+IPD+  A+ H  TK LAEK+   + +Y+EAMEKVKLKQGL+  M ISSEGN
Sbjct: 419 PDNAGYGSVIPDAHDAESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGN 478

Query: 487 AYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKF 546
            YLQ SQFWKLY ED+  C++VIRT+ GLV+LLA LLEPFMPSFS EV KQLN+P +  F
Sbjct: 479 YYLQASQFWKLYKEDKPLCAVVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--F 536

Query: 547 SLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEA 606
           SLSDE G++  A +PW+ILP  HRIG   PLFKEL++++V  +REKFAGSQ+DR  +A  
Sbjct: 537 SLSDERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDR--RARD 594

Query: 607 EAKRLAEHLKKTKIS 621
           EA  LA+ L KTK+S
Sbjct: 595 EAANLADQLNKTKLS 609

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2 Back     alignment and function description
>sp|Q54X95|SYMC_DICDI Probable methionine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=metS PE=3 SV=1 Back     alignment and function description
>sp|Q68FL6|SYMC_MOUSE Methionine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Mars PE=2 SV=1 Back     alignment and function description
>sp|Q6PF21|SYMC_XENLA Methionine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=mars PE=2 SV=1 Back     alignment and function description
>sp|Q2T9L8|SYMC_BOVIN Methionine--tRNA ligase, cytoplasmic OS=Bos taurus GN=MARS PE=2 SV=1 Back     alignment and function description
>sp|P56192|SYMC_HUMAN Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2 Back     alignment and function description
>sp|P00958|SYMC_YEAST Methionine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MES1 PE=1 SV=4 Back     alignment and function description
>sp|Q9UUF2|SYMC_SCHPO Probable methionine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rar1 PE=3 SV=1 Back     alignment and function description
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
298205165 949 unnamed protein product [Vitis vinifera] 0.980 0.645 0.841 0.0
225433588 807 PREDICTED: probable methionyl-tRNA synth 0.980 0.759 0.841 0.0
225463876 804 PREDICTED: probable methionyl-tRNA synth 0.984 0.764 0.832 0.0
224129132 801 predicted protein [Populus trichocarpa] 0.971 0.757 0.811 0.0
356543424 803 PREDICTED: probable methionyl-tRNA synth 0.966 0.752 0.792 0.0
356544343636 PREDICTED: probable methionyl-tRNA synth 0.974 0.957 0.784 0.0
147766455652 hypothetical protein VITISV_028905 [Viti 0.96 0.920 0.804 0.0
449442335 804 PREDICTED: probable methionine--tRNA lig 0.988 0.768 0.779 0.0
224055851 805 predicted protein [Populus trichocarpa] 0.966 0.750 0.806 0.0
297800908 798 hypothetical protein ARALYDRAFT_493536 [ 0.972 0.761 0.783 0.0
>gi|298205165|emb|CBI17224.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/613 (84%), Positives = 556/613 (90%)

Query: 9   DGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY 68
           D        KLP+ GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNA+Y
Sbjct: 7   DAAHGRTAPKLPIQGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY 66

Query: 69  ICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQ 128
           ICGTDEYGTATETKAMEE CT QQICDKY+AIHK VY WFNISFDEFGRTS+PQQTE+CQ
Sbjct: 67  ICGTDEYGTATETKAMEEKCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQ 126

Query: 129 AIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLL 188
           AIFKKL+ENNWLSE   QQLYCD C++FLADRLVEG CPT  CNYDSARGDQCEKCGKLL
Sbjct: 127 AIFKKLMENNWLSENVMQQLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLL 186

Query: 189 NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAW 248
           NP ELKDPRCK C +TP IRDT+HLFLELPL+KDKLEEYIN MSV+GSWSQNAIQ T+AW
Sbjct: 187 NPIELKDPRCKFCHSTPHIRDTNHLFLELPLLKDKLEEYINLMSVAGSWSQNAIQATHAW 246

Query: 249 LKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPEN 308
           LK+GLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGY+SITSCYTPDWE+WWKNPEN
Sbjct: 247 LKEGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPEN 306

Query: 309 VALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 368
           V LYQFMGKDN PFHTVMFPSTLLGT ENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN
Sbjct: 307 VELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 366

Query: 369 DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPP 428
           D KDTNIP EVWRYYL+TNRPEVSDTLFTW D QAKLN+ELLNNLGNF+NRVLSFIAKP 
Sbjct: 367 DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPA 426

Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
           G GYGS+IPD+P A+LH  TK LAEK+   ++QY+EAMEKVKLKQGL+  MSISSEGNAY
Sbjct: 427 GLGYGSVIPDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAY 486

Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
           LQESQFWKLY EDQ SCSIV++TS+GLV+LLACLLEPFMPSFSLEVLKQLN+P ET F L
Sbjct: 487 LQESQFWKLYKEDQPSCSIVVKTSLGLVHLLACLLEPFMPSFSLEVLKQLNMPPETSFLL 546

Query: 549 SDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEA 608
            DE GD+ERA++PWEI+PAGHRIG   PLFKELKDEDV FFREKFAGSQADR V+AEAEA
Sbjct: 547 CDEKGDIERAKRPWEIVPAGHRIGTPEPLFKELKDEDVEFFREKFAGSQADRIVKAEAEA 606

Query: 609 KRLAEHLKKTKIS 621
           K++AE LKKTK+S
Sbjct: 607 KKIAEQLKKTKVS 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433588|ref|XP_002269672.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225463876|ref|XP_002268996.1| PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera] gi|296081059|emb|CBI18340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224129132|ref|XP_002328898.1| predicted protein [Populus trichocarpa] gi|222839328|gb|EEE77665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543424|ref|XP_003540160.1| PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356544343|ref|XP_003540612.1| PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|147766455|emb|CAN73803.1| hypothetical protein VITISV_028905 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442335|ref|XP_004138937.1| PREDICTED: probable methionine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224055851|ref|XP_002298685.1| predicted protein [Populus trichocarpa] gi|222845943|gb|EEE83490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297800908|ref|XP_002868338.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] gi|297314174|gb|EFH44597.1| hypothetical protein ARALYDRAFT_493536 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
TAIR|locus:2119515 797 AT4G13780 [Arabidopsis thalian 0.972 0.762 0.775 2.2e-270
DICTYBASE|DDB_G0279113 736 metS "methionyl-tRNA synthetas 0.894 0.759 0.557 2.3e-181
ZFIN|ZDB-GENE-030219-83951 mars "methionine-tRNA syntheta 0.915 0.601 0.543 8.6e-175
MGI|MGI:1345633902 Mars "methionine-tRNA syntheta 0.926 0.641 0.535 2.6e-173
RGD|1305321902 Mars "methionyl-tRNA synthetas 0.899 0.623 0.538 5.6e-171
UNIPROTKB|Q2T9L8898 MARS "Methionine--tRNA ligase, 0.912 0.634 0.531 1.5e-170
UNIPROTKB|P56192900 MARS "Methionine--tRNA ligase, 0.899 0.624 0.535 3.1e-170
UNIPROTKB|E2QZ06900 MARS "Uncharacterized protein" 0.92 0.638 0.530 4e-170
UNIPROTKB|F6XD28898 MARS "Uncharacterized protein" 0.92 0.640 0.530 4e-170
UNIPROTKB|A6NC17635 MARS "Methionine--tRNA ligase, 0.907 0.892 0.531 6.4e-170
TAIR|locus:2119515 AT4G13780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2600 (920.3 bits), Expect = 2.2e-270, P = 2.2e-270
 Identities = 477/615 (77%), Positives = 535/615 (86%)

Query:     7 EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNA 66
             E DG+ +    KLP+PGKRNILITSALPYVNNVPHLGNIIGCVLSADV+ARYCRLRGYNA
Sbjct:     2 EDDGKSS---PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNA 58

Query:    67 LYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEI 126
             +YICGTDEYGTATETKA+EENCT ++ICDKY+AIHK VY+WF ISFD+FGRTSTP+QTE+
Sbjct:    59 IYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEV 118

Query:   127 CQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGK 186
             CQAIF KL +N WLSE T QQLYCDTCK+FLADRLVEGSCP  GCNYDSARGDQCEKCGK
Sbjct:   119 CQAIFNKLWDNKWLSENTMQQLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGK 178

Query:   187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY 246
             LLNPTELKDP+CKVCQ TP+IRDTDHLF+ELPL+KD+LE YI K SV+GSWSQNAIQ T 
Sbjct:   179 LLNPTELKDPKCKVCQNTPRIRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQTTN 238

Query:   247 AWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNP 306
             AWL+DGL+ RCITRDLKWGVPVPHEK+KDKVFYVWFDAPIGY+SITSCYT +WE+WWKNP
Sbjct:   239 AWLRDGLRQRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTSEWEKWWKNP 298

Query:   307 ENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVF 366
             ENV LYQFMGKDN PFHTVMFPST LGTEENWTLMKTISVTEYLNYE GKFSKSKGVGVF
Sbjct:   299 ENVELYQFMGKDNVPFHTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVF 358

Query:   367 GNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426
             GNDVKDTNIP EVWRYYL+TNRPEVSDT F+W D QAKLN ELL+NLGNFVNRVLSFIAK
Sbjct:   359 GNDVKDTNIPVEVWRYYLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAK 418

Query:   427 PPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGN 486
             P   GYGS+IPD+  A+ H  TK LAEK+   + +Y+EAMEKVKLKQGL+  M ISSEGN
Sbjct:   419 PDNAGYGSVIPDAHDAESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGN 478

Query:   487 AYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKF 546
              YLQ SQFWKLY ED+  C++VIRT+ GLV+LLA LLEPFMPSFS EV KQLN+P +  F
Sbjct:   479 YYLQASQFWKLYKEDKPLCAVVIRTAAGLVHLLAQLLEPFMPSFSCEVFKQLNLPPQ--F 536

Query:   547 SLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEA 606
             SLSDE G++  A +PW+ILP  HRIG   PLFKEL++++V  +REKFAGSQ+DR  +A  
Sbjct:   537 SLSDERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDR--RARD 594

Query:   607 EAKRLAEHLKKTKIS 621
             EA  LA+ L KTK+S
Sbjct:   595 EAANLADQLNKTKLS 609
GO:0000049 "tRNA binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004825 "methionine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006431 "methionyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0046686 "response to cadmium ion" evidence=IEP
DICTYBASE|DDB_G0279113 metS "methionyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-83 mars "methionine-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1345633 Mars "methionine-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305321 Mars "methionyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9L8 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P56192 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ06 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XD28 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NC17 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A1B3P3SYM_PARDP6, ., 1, ., 1, ., 1, 00.36790.87360.9545yesno
Q0ANL8SYM_MARMM6, ., 1, ., 1, ., 1, 00.38380.86720.9475yesno
Q166L9SYM_ROSDO6, ., 1, ., 1, ., 1, 00.39490.87040.9510yesno
Q0C161SYM_HYPNA6, ., 1, ., 1, ., 1, 00.37370.8880.9585yesno
A1RXT9SYM_THEPD6, ., 1, ., 1, ., 1, 00.36060.88640.9805yesno
Q82F60SYM_STRAW6, ., 1, ., 1, ., 1, 00.39140.88320.9616yesno
Q3J0T3SYM_RHOS46, ., 1, ., 1, ., 1, 00.38170.87840.9597yesno
Q68FL6SYMC_MOUSE6, ., 1, ., 1, ., 1, 00.52810.9280.6430yesno
Q1GEI7SYM_RUEST6, ., 1, ., 1, ., 1, 00.37770.87680.9563yesno
A8ZQ66SYM1_ACAM16, ., 1, ., 1, ., 1, 00.40940.87680.9820yesno
Q9ZTS1SYM_ORYSJ6, ., 1, ., 1, ., 1, 00.76030.95840.7478yesno
B8H5U4SYM_CAUCN6, ., 1, ., 1, ., 1, 00.36410.88320.9701yesno
B9KKH3SYM_RHOSK6, ., 1, ., 1, ., 1, 00.38200.87360.9545yesno
B1L7J9SYM_KORCO6, ., 1, ., 1, ., 1, 00.35320.84320.9427yesno
Q5LTL1SYM_RUEPO6, ., 1, ., 1, ., 1, 00.37790.8720.9527yesno
Q28MK0SYM_JANSC6, ., 1, ., 1, ., 1, 00.35710.8640.9473yesno
A2BLU2SYM_HYPBU6, ., 1, ., 1, ., 1, 00.38210.85280.9318yesno
P56192SYMC_HUMAN6, ., 1, ., 1, ., 1, 00.53310.88960.6177yesno
P00958SYMC_YEAST6, ., 1, ., 1, ., 1, 00.51530.88960.7403yesno
Q9YCY3SYM_AERPE6, ., 1, ., 1, ., 1, 00.37940.8560.9353yesno
Q2T9L8SYMC_BOVIN6, ., 1, ., 1, ., 1, 00.52590.90240.6280yesno
A4WV24SYM_RHOS56, ., 1, ., 1, ., 1, 00.37660.86880.9493yesno
B0T3J0SYM_CAUSK6, ., 1, ., 1, ., 1, 00.38110.88320.9701yesno
Q9SVN5SYM_ARATH6, ., 1, ., 1, ., 1, 00.77560.97280.7628yesno
Q54X95SYMC_DICDI6, ., 1, ., 1, ., 1, 00.55860.89280.7581yesno
A3PLG8SYM_RHOS16, ., 1, ., 1, ., 1, 00.38170.87840.9597yesno
A8LIJ9SYM_DINSH6, ., 1, ., 1, ., 1, 00.37520.880.9615yesno
Q8SQW5SYMC_ENCCU6, ., 1, ., 1, ., 1, 00.43180.840.9545yesno
Q9A884SYM_CAUCR6, ., 1, ., 1, ., 1, 00.36410.88320.9701yesno
Q9UUF2SYMC_SCHPO6, ., 1, ., 1, ., 1, 00.52550.89920.7186yesno
A0M5Z9SYM_GRAFK6, ., 1, ., 1, ., 1, 00.36370.8960.8104yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.100.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
PLN02610 801 PLN02610, PLN02610, probable methionyl-tRNA synthe 0.0
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 0.0
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 0.0
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 0.0
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 0.0
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 0.0
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 1e-150
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 1e-91
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 8e-76
PLN02224616 PLN02224, PLN02224, methionine-tRNA ligase 3e-40
cd07957129 cd07957, Anticodon_Ia_Met, Anticodon-binding domai 2e-36
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 5e-18
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 4e-14
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 1e-07
COG0495 814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 7e-07
TIGR00396 842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 6e-06
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 8e-06
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 2e-05
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 4e-05
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 1e-04
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 2e-04
PRK05729 874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 4e-04
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 0.004
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information 
 Score = 1269 bits (3286), Expect = 0.0
 Identities = 498/614 (81%), Positives = 555/614 (90%), Gaps = 2/614 (0%)

Query: 9   DGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY 68
             +      KLP+PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNA+Y
Sbjct: 1   MEDEGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY 60

Query: 69  ICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQ 128
           ICGTDEYGTATETKA+EENCT ++ICDKY+AIHK VY+WF+ISFD+FGRTSTPQQTEICQ
Sbjct: 61  ICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQ 120

Query: 129 AIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLL 188
           AIFKKL+ENNWLSE T QQLYCDTC++FLADRLVEG+CPT GCNYDSARGDQCEKCGKLL
Sbjct: 121 AIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLL 180

Query: 189 NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAW 248
           NPTEL DP+CKVC+ TP+IRDTDHLFLELPL+KDKL EYIN+ SV+G WSQNAIQ T AW
Sbjct: 181 NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAW 240

Query: 249 LKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPEN 308
           L+DGLKPRCITRDLKWGVPVP EK+KDKVFYVWFDAPIGY+SIT+CYTP+WE+WWKNPEN
Sbjct: 241 LRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPEN 300

Query: 309 VALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 368
           V LYQFMGKDN PFHTVMFPSTLLGT ENWT+MKTISVTEYLNYE GKFSKSKGVGVFGN
Sbjct: 301 VELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGN 360

Query: 369 DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPP 428
           D KDTNIP EVWRYYL+TNRPEVSDTLFTW D QAKLN+ELLNNLGNF+NRVLSFIAKPP
Sbjct: 361 DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPP 420

Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
           G GYGS+IPD+P A+ HP TK LAEK+   ++QY+EAMEKVKLKQGL+  MSISSEGNAY
Sbjct: 421 GAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAY 480

Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
           LQESQFWKLY ED+ SC+IV++TSVGLVYLLACLLEPFMPSFS EVLKQLN+P E+  SL
Sbjct: 481 LQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSL 539

Query: 549 SDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEA 608
           SDE G++ RA++PWE++PAGH+IG   PLFKELKDE+V  +REKFAGSQADRA +AEA  
Sbjct: 540 SDEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAE 599

Query: 609 -KRLAEHLKKTKIS 621
            K+LA+ LKK  +S
Sbjct: 600 AKKLAKQLKKKALS 613

Length = 801
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 625
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PLN02224616 methionine-tRNA ligase 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
PLN02943 958 aminoacyl-tRNA ligase 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
PLN02381 1066 valyl-tRNA synthetase 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PLN02946557 cysteine-tRNA ligase 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 100.0
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 100.0
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 100.0
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 100.0
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 100.0
PRK12418384 cysteinyl-tRNA synthetase; Provisional 100.0
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 100.0
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 100.0
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 100.0
cd00674353 LysRS_core_class_I catalytic core domain of class 100.0
PRK12451562 arginyl-tRNA synthetase; Reviewed 100.0
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
PLN02286576 arginine-tRNA ligase 99.97
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.97
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.95
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.94
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.86
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.82
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.8
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.79
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.76
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.68
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 99.61
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.6
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.55
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.55
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.53
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 99.52
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.48
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 99.47
PRK12558445 glutamyl-tRNA synthetase; Provisional 99.47
PLN03233523 putative glutamate-tRNA ligase; Provisional 99.45
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 99.45
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.41
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 99.4
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.4
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 99.4
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 99.39
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 99.36
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 99.36
PRK05347554 glutaminyl-tRNA synthetase; Provisional 99.35
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.35
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 99.31
PLN02627535 glutamyl-tRNA synthetase 99.31
PTZ00402601 glutamyl-tRNA synthetase; Provisional 99.3
PLN02907722 glutamate-tRNA ligase 99.28
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 99.28
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 99.26
cd00808239 GluRS_core catalytic core domain of discriminating 99.25
PLN02859788 glutamine-tRNA ligase 99.2
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.19
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 99.19
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 99.14
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 99.05
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 98.96
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 98.63
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 97.83
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 97.82
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 97.81
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 97.71
PRK13354410 tyrosyl-tRNA synthetase; Provisional 97.65
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 97.51
PRK05912408 tyrosyl-tRNA synthetase; Validated 97.48
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 97.45
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 97.4
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 97.35
PRK08560329 tyrosyl-tRNA synthetase; Validated 97.24
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 97.13
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 96.78
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 96.7
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 96.52
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 96.42
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 94.16
PLN02486383 aminoacyl-tRNA ligase 93.87
PF0919063 DALR_2: DALR domain; InterPro: IPR015273 The amino 92.37
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 92.34
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 92.05
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 90.8
COG1656165 Uncharacterized conserved protein [Function unknow 90.52
smart0084056 DALR_2 This DALR domain is found in cysteinyl-tRNA 89.96
PRK14714 1337 DNA polymerase II large subunit; Provisional 88.52
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 87.74
PLN02886389 aminoacyl-tRNA ligase 86.59
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 85.4
PF01927147 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T 85.25
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 84.73
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 82.93
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 82.28
PRK01233682 glyS glycyl-tRNA synthetase subunit beta; Validate 81.97
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 80.51
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 80.04
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3e-132  Score=1069.09  Aligned_cols=546  Identities=40%  Similarity=0.704  Sum_probs=511.0

Q ss_pred             CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917           23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK  102 (625)
Q Consensus        23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~  102 (625)
                      ..++++||+|+|||||+|||||+++ +|.+||++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+
T Consensus         3 ~~~~~~VTtalpY~Ng~~HlGH~~~-~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~   81 (558)
T COG0143           3 MMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK   81 (558)
T ss_pred             CCCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999995 789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccc
Q 006917          103 AVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCE  182 (625)
Q Consensus       103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce  182 (625)
                      ++++.|||++|.|+||+++.|.+.+|++|.+|.++|+||.+.+++|||++|++|++|++|+|+||.  ||+++++||+||
T Consensus        82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce  159 (558)
T COG0143          82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCE  159 (558)
T ss_pred             HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             ccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc-c
Q 006917          183 KCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR-D  261 (625)
Q Consensus       183 ~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR-~  261 (625)
                      .||+.++|.+|++|+|++||+++++++++||||+|++|+++|++|+++++. ..||.+.++.+.+|+++||.|||||| +
T Consensus       160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~  238 (558)
T COG0143         160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTD  238 (558)
T ss_pred             hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCC
Confidence            999999999999999999999999999999999999999999999999873 46999999999999999999999999 8


Q ss_pred             cCCCcccCCCCCCCceeeeeccccchHHHhccCCC-----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC
Q 006917          262 LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT-----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE  336 (625)
Q Consensus       262 ~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~-----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~  336 (625)
                      .+||||||+.  +++|+||||||++||||+++.+.     .+|++||+++ +++++|||||||++||+++|||||+++|.
T Consensus       239 ~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~  315 (558)
T COG0143         239 LDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGL  315 (558)
T ss_pred             CCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCC
Confidence            9999999955  89999999999999999987653     4799999875 89999999999999999999999999998


Q ss_pred             CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHH
Q 006917          337 NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNF  416 (625)
Q Consensus       337 ~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~  416 (625)
                      +  +|+++++||||+++|+|||||+||+|+|.++++ .||+|+|||||++..|+++|.+||++.|++++|++|++.+||+
T Consensus       316 ~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl  392 (558)
T COG0143         316 P--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNL  392 (558)
T ss_pred             C--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6  899999999999999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccc
Q 006917          417 VNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK  496 (625)
Q Consensus       417 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~  496 (625)
                      ++|+++|+.|    +++|.+|....... +.|+.++..+..+.+.+.++|+.+++++|+..|++|++.+|+|++..+||+
T Consensus       393 ~~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~  467 (558)
T COG0143         393 ANRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWK  467 (558)
T ss_pred             HHHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence            9999999999    89999987542223 678899999999999999999999999999999999999999999999999


Q ss_pred             cccCC-HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCccc-ccCCcccchhhhccCCCccCCCCCccCCC
Q 006917          497 LYNED-QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK-FSLSDENGDLERARKPWEILPAGHRIGMS  574 (625)
Q Consensus       497 l~k~~-~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  574 (625)
                      +.|++ ++++++++++++++++.++++|+||||.+|++||++||.+...+ ..+.          ..+..+..|+.++++
T Consensus       468 l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~----------~~~~~l~~~~~~~~~  537 (558)
T COG0143         468 LAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWL----------GARQPLLPGHKLGPP  537 (558)
T ss_pred             hhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhh----------hhccccCCCcccCCc
Confidence            99875 68999999999999999999999999999999999999875432 1111          112246678999999


Q ss_pred             CCCccCCChHHHHHHHHHh
Q 006917          575 SPLFKELKDEDVRFFREKF  593 (625)
Q Consensus       575 ~~Lf~ki~~~~i~~~~~~~  593 (625)
                      ++||+|++.+.++++.++.
T Consensus       538 ~~lF~ri~~~~~~~~~~~~  556 (558)
T COG0143         538 EPLFPRIEEEAIEELIEAL  556 (558)
T ss_pred             ccCccccCHHHHHHHHHhh
Confidence            9999999999888776554

>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>COG1656 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
1rqg_A 722 Methionyl-Trna Synthetase From Pyrococcus Abyssi Le 1e-106
3h9c_A547 Structure Of Methionyl-Trna Synthetase: Crystal For 4e-63
1p7p_A551 Methionyl-trna Synthetase From Escherichia Coli Com 4e-63
1f4l_A551 Crystal Structure Of The E.Coli Methionyl-Trna Synt 4e-63
1qqt_A551 Methionyl-Trna Synthetase From Escherichia Coli Len 1e-62
3h97_A560 Structure Of A Mutant Methionyl-trna Synthetase Wit 3e-60
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 4e-39
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 3e-34
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 8e-34
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 2e-33
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 7e-33
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 8e-33
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 2e-23
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-22
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 4e-22
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 4e-22
2v0c_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 4e-06
1obh_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 4e-06
1gax_A 862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 7e-04
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 Back     alignment and structure 
Iteration: 1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 316/581 (54%), Gaps = 48/581 (8%)
Query: 28  LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
           ++TSALPY N   H G++ G  L AD+F RY RL+G + ++ICGTDE+GT    +A++E 
Sbjct: 5   MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64
Query: 88  CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147
            + ++I D+++   K  +    ISFD FGRT  P   ++ Q  F K  EN  L +  T+Q
Sbjct: 65  RSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQ 124
Query: 148 LYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207
            YC+  K FL DR V G+CP   C  +  +GDQCE CG+ L P  L +PRC +C      
Sbjct: 125 AYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 208 RDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVP 267
           RD+ H ++++    ++L+ +I K      W  N      +W+++GL+ R ITRDL WG+P
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238
Query: 268 VP--HEKFKDKVFYVWFDAPIGYISITSCYTP------DWEEWWKNPE-NVALYQFMGKD 318
           VP   E  K KV YVWF+APIGYISIT  +        +W+++W N +    +  F+GKD
Sbjct: 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKD 298
Query: 319 NAPFHTVMFPSTLLG--------TEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDV 370
           N PFH + +P+ L+          E  W L   I   EYL  E  KFS S+   ++ ++ 
Sbjct: 299 NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEF 358
Query: 371 KDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGR 430
            D   PA+  RYYL T  PE  D+ F++ DF+ ++N EL+NNLGNFV+R L+F+     R
Sbjct: 359 LDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFV----NR 413
Query: 431 GYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQ 490
            +  ++P+  + +L    +   E+I     +  E +   + K  L+  MS++S GN Y  
Sbjct: 414 YFDGVVPE--RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFD 471
Query: 491 ESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSD 550
             Q WK   ED+      +  S+ +V  L  LLEPF+P  S ++   LN+         D
Sbjct: 472 HKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL---------D 522
Query: 551 ENGDLERARKPWEI--LPAGHRIGMSSPLFKELKDEDVRFF 589
           E        K WE   LPAGH++     LFK++ D+ + +F
Sbjct: 523 EV-------KRWEFRELPAGHKVRKPEILFKKVTDDQIIYF 556
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 Back     alignment and structure
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 Back     alignment and structure
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 Back     alignment and structure
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 Back     alignment and structure
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 0.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 0.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 1e-93
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 3e-92
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 2e-91
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 3e-90
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 6e-88
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 3e-86
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 2e-12
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 8e-08
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 3e-07
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 3e-04
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
 Score =  815 bits (2107), Expect = 0.0
 Identities = 207/612 (33%), Positives = 319/612 (52%), Gaps = 44/612 (7%)

Query: 25  RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
              ++TSALPY N   H G++ G  L AD+F RY RL+G + ++ICGTDE+GT    +A+
Sbjct: 2   VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61

Query: 85  EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
           +E  + ++I D+++   K  +    ISFD FGRT  P   ++ Q  F K  EN  L +  
Sbjct: 62  KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121

Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
           T+Q YC+  K FL DR V G+CP   C  +  +GDQCE CG+ L P  L +PRC +C   
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179

Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
              RD+ H ++++    ++L+ +I K      W  N      +W+++GL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235

Query: 265 GVPVP--HEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPE-NVALYQFM 315
           G+PVP   E  K KV YVWF+APIGYISIT  +        +W+++W N +    +  F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295

Query: 316 GKDNAPFHTVMFPSTLLG--------TEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFG 367
           GKDN PFH + +P+ L+          E  W L   I   EYL  E  KFS S+   ++ 
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355

Query: 368 NDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKP 427
           ++  D   PA+  RYYL T  PE  D+ F++ DF+ ++N EL+NNLGNFV+R L+F+ + 
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414

Query: 428 PGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487
               +  ++P+    +L    +   E+I     +  E +   + K  L+  MS++S GN 
Sbjct: 415 ----FDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468

Query: 488 YLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFS 547
           Y    Q WK   ED+      +  S+ +V  L  LLEPF+P  S ++   LN+    ++ 
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWE 528

Query: 548 LSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAE 607
             +              LPAGH++     LFK++ D+ + +F   +         +   +
Sbjct: 529 FRE--------------LPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLD 574

Query: 608 AKRLAEHLKKTK 619
                E + +  
Sbjct: 575 KYYKREDVIRVA 586
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 100.0
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 100.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 100.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.98
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.75
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 99.66
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.59
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 99.59
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.57
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.45
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.44
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.41
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.39
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 99.38
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.38
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 99.13
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 98.32
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 97.9
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 97.82
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 97.75
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 97.56
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 97.53
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 97.5
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 97.49
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 97.39
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 97.35
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 97.33
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 97.14
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 95.39
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 95.36
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 95.35
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 95.3
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 95.06
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 94.61
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 94.34
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 94.2
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 93.71
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 92.7
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 92.23
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 92.16
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 92.03
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 91.7
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 91.6
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 91.39
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 91.24
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 90.98
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 90.61
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 90.45
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 90.37
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 90.06
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 90.06
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 90.02
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 89.64
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 89.56
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 89.25
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 88.89
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 88.15
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 88.01
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 87.98
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 86.92
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 86.87
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 86.67
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 85.84
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 82.87
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 82.55
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-115  Score=991.30  Aligned_cols=541  Identities=38%  Similarity=0.728  Sum_probs=495.4

Q ss_pred             CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917           25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV  104 (625)
Q Consensus        25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~  104 (625)
                      ++||||+|||||||.|||||++++++.+|+++||+|++||+|+|++|||+||+||+.+|+++|++|+++++++++.|+++
T Consensus         2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~   81 (722)
T 1rqg_A            2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT   81 (722)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            67999999999999999999998456699999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccccc
Q 006917          105 YNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKC  184 (625)
Q Consensus       105 ~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~c  184 (625)
                      |++|||++|+|+||+++.|.+.++++|.+|+++|+||++.+++|||+.|++||+|++|+|+||.  |+.++++|++|+.|
T Consensus        82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~~  159 (722)
T 1rqg_A           82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVC  159 (722)
T ss_dssp             HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSSS
T ss_pred             HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCc--cCCccCCcchhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             CCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCC
Q 006917          185 GKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW  264 (625)
Q Consensus       185 g~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~W  264 (625)
                      |+.+++.+|++|+|++||++++++.++||||++++|++.+++|+++++    ||++.++++.+||++|++||||||++.|
T Consensus       160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~W  235 (722)
T 1rqg_A          160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLNW  235 (722)
T ss_dssp             CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred             ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHCCCcccceeccccC
Confidence            999999999999999999999999999999999999999999999874    8999999999999999999999999999


Q ss_pred             CcccCCC--CCCCceeeeeccccchHHHhccCC------ChhhHhhcCC-CCCcceEEEEeecccchhHhHHHHHhhcCC
Q 006917          265 GVPVPHE--KFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKN-PENVALYQFMGKDNAPFHTVMFPSTLLGTE  335 (625)
Q Consensus       265 Gi~vP~~--~~~~~viyvWfDa~~~yi~~~~~~------~~~~~~~w~~-p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~  335 (625)
                      |+|+|.+  +.+++++||||||+++|++....|      +++|+.||+. +.++..+|++|+||++||+++|||++++++
T Consensus       236 G~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~  315 (722)
T 1rqg_A          236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYG  315 (722)
T ss_dssp             SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred             ccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccC
Confidence            9999974  347999999999999999865433      2368899972 235667999999999999999999999987


Q ss_pred             C--------CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhH
Q 006917          336 E--------NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNT  407 (625)
Q Consensus       336 ~--------~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~  407 (625)
                      .        .|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.+.++.|+
T Consensus       316 ~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~  394 (722)
T 1rqg_A          316 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE  394 (722)
T ss_dssp             CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred             CCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHH
Confidence            3        356889999999999999999999999999999998 8999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 006917          408 ELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA  487 (625)
Q Consensus       408 ~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~  487 (625)
                      +++++++|+++|+.+++.+    ++++.+|..  ......|+++++.+..+++.+.++|++|+|+.|+..|++|++.+|+
T Consensus       395 ~l~~~l~N~~~R~~~~~~k----~~~~~~~~~--~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~  468 (722)
T 1rqg_A          395 ELVNNLGNFVHRALTFVNR----YFDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR  468 (722)
T ss_dssp             TTTTTHHHHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----hcCCCCCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987    566666532  1245689999999999999999999999999999999999999999


Q ss_pred             HHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCC
Q 006917          488 YLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPA  567 (625)
Q Consensus       488 y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (625)
                      |++..+||.+.+++..++.+++++++++++.+++||+||||++|++||++||.+..  ..|.+            ..++.
T Consensus       469 Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~~  534 (722)
T 1rqg_A          469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELPA  534 (722)
T ss_dssp             HHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCCT
T ss_pred             HHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcc--cCchh------------ccCCC
Confidence            99999999998766677788999999999999999999999999999999997531  12321            12567


Q ss_pred             CCccCCCCCCccCCChHHHHHHHHH
Q 006917          568 GHRIGMSSPLFKELKDEDVRFFREK  592 (625)
Q Consensus       568 g~~l~~~~~Lf~ki~~~~i~~~~~~  592 (625)
                      |++|+++++||+||++++++++.++
T Consensus       535 g~~~~~~~~lf~ri~~~~~~~~~~~  559 (722)
T 1rqg_A          535 GHKVRKPEILFKKVTDDQIIYFILN  559 (722)
T ss_dssp             TCBCCCCCCSCCCCCHHHHHHHHHH
T ss_pred             CCCcCCCCCCcCCCCHHHHHHHHhh
Confidence            9999999999999999888766653
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 625
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 8e-71
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 5e-67
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 2e-51
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 1e-38
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 5e-38
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 2e-27
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 1e-24
d1rqga1210 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me 2e-22
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 1e-21
d1pfva1162 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me 1e-17
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 3e-17
d1rqga335 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (Me 2e-14
d1pfva335 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (Me 9e-12
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 6e-09
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 9e-05
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

 Score =  230 bits (588), Expect = 8e-71
 Identities = 110/394 (27%), Positives = 176/394 (44%), Gaps = 53/394 (13%)

Query: 25  RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
           + IL+T ALPY N   HLG+++  +  ADV+ RY R+RG+   +IC  D +GT    KA 
Sbjct: 2   KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60

Query: 85  EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
           +   T +Q+  +    H+  +  FNIS+D +  T + +  ++ + I+ +L EN ++   T
Sbjct: 61  QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120

Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
             QLY      FL DR V                                     V  AT
Sbjct: 121 ISQLYDPEKGMFLPDRFV-------------------------------------VSGAT 143

Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
           P +RD++H F +LP   + L+ +      SG+  +        W + GL+   I+RD  +
Sbjct: 144 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 199

Query: 265 GVPVPHEKFKDKVFYVWFDAPIGYISITS------CYTPDWEEWWKNPENVALYQFMGKD 318
                      K FYVW DAPIGY+            +  ++E+WK      LY F+GKD
Sbjct: 200 -FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258

Query: 319 NAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAE 378
              FH++ +P+ L G+  N+     + V  Y+     K SKS+G  +  +   +    A+
Sbjct: 259 IVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDAD 315

Query: 379 VWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLN 411
             RYY        + D     EDF  ++N +++N
Sbjct: 316 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Length = 35 Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Length = 35 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 100.0
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.95
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.95
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.91
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.9
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.89
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.87
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.49
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.35
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.31
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 99.31
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.27
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.22
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 99.18
d1rqga335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro 99.16
d1pfva335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch 98.98
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 98.08
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 97.94
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 97.56
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 96.88
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 94.46
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 93.2
d1li5a187 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 93.05
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 92.05
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 91.5
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 87.54
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 87.25
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 85.44
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-66  Score=546.38  Aligned_cols=340  Identities=32%  Similarity=0.612  Sum_probs=307.1

Q ss_pred             CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917           25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV  104 (625)
Q Consensus        25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~  104 (625)
                      |+++||+|+|||||+|||||+|+ ++.+|+++||+|++||+|.+++|+||||+||+.+|+++|++++++++.+...|.++
T Consensus         2 ~~~~i~~~~P~~nG~lHiGHar~-~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~   80 (350)
T d1pfva2           2 KKILVTCALPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD   80 (350)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCCCccccccHH-HHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHH
Confidence            78999999999999999999998 56799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccccc
Q 006917          105 YNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKC  184 (625)
Q Consensus       105 ~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~c  184 (625)
                      ++.|||+++.++.|.++.|.+.+++++.+|.++|++|++.+.++||+.|+++++|+++                      
T Consensus        81 ~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~----------------------  138 (350)
T d1pfva2          81 FAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV----------------------  138 (350)
T ss_dssp             HHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT----------------------
T ss_pred             HHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee----------------------
Confidence            9999999999999999999999999999999999999999999999999999997643                      


Q ss_pred             CCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccC-
Q 006917          185 GKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK-  263 (625)
Q Consensus       185 g~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~-  263 (625)
                                     .||.+++.+.++||||++++|++.+.++.+...    |+++....+..++.+++.+||+||++. 
T Consensus       139 ---------------~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~  199 (350)
T d1pfva2         139 ---------------VSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGA----LQEQVANKMQEWFESGLQQWDISRDAPY  199 (350)
T ss_dssp             ---------------TTCCCCEEEEEEEEEECGGGGHHHHHHHHTTSC----SCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred             ---------------ccCCCccceecchheeehHHHHHHHHHHhhcCC----CchhhHHHHHHHhhccCCcccccccccc
Confidence                           357788899999999999999999999998763    788888888889989999999999875 


Q ss_pred             CCcccCCCCCCCceeeeeccccchHHHhccC------CChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCC
Q 006917          264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSC------YTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEEN  337 (625)
Q Consensus       264 WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~------~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~  337 (625)
                      ||+++|.+  ++.++++|++++..|++....      ....|..+|......+++|+.|+|++++|+.++++++++.+. 
T Consensus       200 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~-  276 (350)
T d1pfva2         200 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNF-  276 (350)
T ss_dssp             SSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB-
T ss_pred             CCccccCC--CCcccccccccccchhhhhhccccccccchhhhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCC-
Confidence            68998876  699999999999999875432      233466666543445679999999999999999999998764 


Q ss_pred             ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC-CCCCCCcCHHHHHHHHhHHHHH
Q 006917          338 WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP-EVSDTLFTWEDFQAKLNTELLN  411 (625)
Q Consensus       338 ~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~-~~~d~~fs~~~~~~~~n~~l~~  411 (625)
                       .++.++++||||+++|+|||||+||+|++.|+++ .||+|+|||||++..+ ..+|++||++.|.++.|++|+|
T Consensus       277 -~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~-~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~~n  349 (350)
T d1pfva2         277 -RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN  349 (350)
T ss_dssp             -CCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred             -CccceEEecccEEECCeEccCcCCCCCCHHHHHH-HCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHccC
Confidence             5788999999999999999999999999999998 7999999999998644 4578999999999999988875
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure