Citrus Sinensis ID: 008191
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | 2.2.26 [Sep-21-2011] | |||||||
| B3E1P0 | 487 | Cysteine--tRNA ligase OS= | yes | no | 0.841 | 0.991 | 0.497 | 1e-137 | |
| A1AK01 | 493 | Cysteine--tRNA ligase OS= | yes | no | 0.839 | 0.977 | 0.482 | 1e-132 | |
| Q39ZL8 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.837 | 0.991 | 0.485 | 1e-132 | |
| Q3A8C9 | 481 | Cysteine--tRNA ligase OS= | yes | no | 0.827 | 0.987 | 0.475 | 1e-131 | |
| Q6AJ23 | 489 | Cysteine--tRNA ligase OS= | yes | no | 0.834 | 0.979 | 0.465 | 1e-131 | |
| B9LZV4 | 494 | Cysteine--tRNA ligase OS= | yes | no | 0.832 | 0.967 | 0.483 | 1e-130 | |
| A0LIR9 | 493 | Cysteine--tRNA ligase OS= | yes | no | 0.843 | 0.981 | 0.470 | 1e-129 | |
| Q3J8Y9 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.824 | 0.975 | 0.478 | 1e-128 | |
| A5G949 | 494 | Cysteine--tRNA ligase OS= | yes | no | 0.836 | 0.971 | 0.465 | 1e-128 | |
| Q30ZH8 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.834 | 0.987 | 0.460 | 1e-128 |
| >sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/484 (49%), Positives = 317/484 (65%), Gaps = 1/484 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT+S ++E P+V GKVGMYVCGVT YD HIGHAR + FD++YRYLR GY+V
Sbjct: 3 LRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
Y+RN+TD+DDKII RAN+ G D +++ RY F +DM L L P++EP+ +DH+ I
Sbjct: 63 TYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIEDI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I +++DNG AY VDGDVYF+V+ FP Y +LSGR L+D AG RV VD RK+NP DFA
Sbjct: 123 ISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP+WESPWG GRPGWHIECSAMS +LG SFDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
A + YW+HNGFV I+SEKMSKSLGNFFTIR+V+EL+ P LR F++ HYRSP+
Sbjct: 243 EGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRSPL 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
+YS L A + IY+ L ++AL A + + + F +M
Sbjct: 303 DYSDQNLREAQAGLSRIYEALAALDQALEKPATAIHLPASAAEFAEKVAGLLPRFREAMD 362
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L L D ++T+N LL G A R + L L + + VLGL S
Sbjct: 363 DDFNTAQALGTLFDSIRTLNRLLAEGGGSSSASRAD-LEQLRAAVTEIGAVLGLFRIKPS 421
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+ L + + +++ +++ I +R ARKNK++++SD IR L + I L+D+P G
Sbjct: 422 DWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIRDYLLSRDIQLVDTPQG 481
Query: 556 TTWR 559
T W+
Sbjct: 482 TAWK 485
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Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6 |
| >sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/489 (48%), Positives = 305/489 (62%), Gaps = 7/489 (1%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +++ P GK GMYVCGVT YD HIGHAR V FDV+YRYL + GY V
Sbjct: 3 LRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGYAV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRNFTD+DDKII RAN+ G D ++S RY E F+QDM L P+VEP+ +DHM I
Sbjct: 63 TYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMGGI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I ++ G AY DGDVY++V+ FP Y +LSGR LED AG RV VD RK+NP DFA
Sbjct: 123 ISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTIR+V+E Y P LR F++ HYRSPI
Sbjct: 243 EAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDA---AALKDSIPPDTVTSINKFH---ND 429
++S L A + IY L + A+ D +PP K +
Sbjct: 303 DFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPVEGAPLPPAGAELHEKLQSLISR 362
Query: 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489
F +M DD +T L L + ++ N + G + L L + + VLGL
Sbjct: 363 FREAMDDDFNTAQALGVLFEAVRATNRFM-AESGDQTPATLALLGQVRRLFAETGDVLGL 421
Query: 490 MSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
++ + L +++ + +++ ++ Q I +R AR N+++++ D IR L GI L
Sbjct: 422 FTSQPAAWLESIKQAKSDQMEISPQEIEQLIAERAAARTNRDFKRGDEIRDLLLQKGIQL 481
Query: 550 MDSPVGTTW 558
+DSP GTTW
Sbjct: 482 LDSPQGTTW 490
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Pelobacter propionicus (strain DSM 2379) (taxid: 338966) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/484 (48%), Positives = 312/484 (64%), Gaps = 3/484 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E P V G+V MYVCGVT YD HIGHAR V FD++YRYLRH GY+V
Sbjct: 3 LRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RAN+ G ++S R+ EF +DM L P+ +P+ ++H+ +
Sbjct: 63 TYVRNYTDVDDKIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIAEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
ID+I+++++ GFAY DGDVYF V+KF Y +LS R L++ +AG R+ V +K++P DFA
Sbjct: 123 IDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA YWIHNGFV I+SEKMSKSLGNFFTI++V+E Y LR FL+ HYRSPI
Sbjct: 243 EAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
++S L A + IY TL ++ L+ A + + F F +M
Sbjct: 303 DFSDQNLREAEAGLERIYGTLAGIDENLT-KGAEGTAEETDRELAEKAVTFPERFREAMD 361
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L + D +++ N +L KG L LA IR V VLG+ ++
Sbjct: 362 DDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRAL--LAEARDRIRKVGAVLGIFTSEPR 419
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+L+ + +T +++ + I +R AR N++++++D IR LAA GI L+DSP G
Sbjct: 420 AFAERLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSLAAKGIMLLDSPQG 479
Query: 556 TTWR 559
TTW+
Sbjct: 480 TTWK 483
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Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/486 (47%), Positives = 312/486 (64%), Gaps = 11/486 (2%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNTM+ ++E +P GKVGMYVCGVT YD HIGHAR V FD++YRYL+ +G++V
Sbjct: 3 LRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGFDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RANE G +L+ + + F +DM L P+++P+ + H+ HI
Sbjct: 63 TYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHIDHI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
++++ +++D G AY GDVYFSV+ FP Y +LS R +++ R+G R+ +K+NP DFA
Sbjct: 123 VNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK+AK GEP WESPWGPGRPGWHIECSAMS YLG SFDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
A + YW+HNGFV ++ EKMSKSLGNFFTIR +++ Y P LR F++ HYRSPI
Sbjct: 243 EGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSI--NKFHNDFLAS 433
++S L+ A + Y+ LH + L+ + PP VTS N F +
Sbjct: 303 DFSDQNLQDARLGLSRFYEGLHAASEVLA---------ACPPGDVTSEAGATLENVFREA 353
Query: 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTG 493
M DD +T + L D ++TIN L+ + +K ++ + AL + + VLGL +
Sbjct: 354 MDDDFNTAAAIGHLFDAVRTINRLITEKGFRKNREKVAQVRALYDALLKLGGVLGLFVSD 413
Query: 494 YSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553
+ L Q+ L TE + I R ARKNK++ ++D IR +LAA GI L+D P
Sbjct: 414 PAAWLKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAAKGIQLLDGP 473
Query: 554 VGTTWR 559
GT W+
Sbjct: 474 QGTAWK 479
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Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/481 (46%), Positives = 312/481 (64%), Gaps = 2/481 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT+S K+E ++P V +YVCG+T YD HIGHAR + FD++ RYLR+L Y+V +
Sbjct: 5 VYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDYKVTF 64
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRNFTD+DDKIIARANE G +L+ R+ +EFH DM +L L P +EP+ ++H+ +ID
Sbjct: 65 VRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQEMID 124
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
+I +++D AY GDVY+ V+ FPEYG+LSGR +ED +AG R++++ +K+NP DFALW
Sbjct: 125 IIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMDFALW 184
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K++K GEP WESPWGPGRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 185 KASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIAQSEG 244
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
A + WIH+GFVTI EKMSKSLGNF TI+ +++ YHP LR F+ T YR+P+++
Sbjct: 245 ANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRNPLDF 304
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
S + ++ A + +Y+ LHD ++ L+ D L I +N F +M++D
Sbjct: 305 SEIAMQDAETALVRLYECLHDIQQ-LAKGD-PTLPALISAKDAAKLNSIETRFQEAMNND 362
Query: 438 LHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEV 497
+T + L L D +K IN A+ ++ L I+ + ++GL+ +
Sbjct: 363 FNTALALGVLYDAIKIINRAQRALTDTPSALDVKMLKGSMTLIQKLAGIVGLLQEDANLF 422
Query: 498 LLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTT 557
L Q +EK L D+TE ++ I+ R AR NK++ +SD IR L GI L D GT
Sbjct: 423 LQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDILLEKGITLKDGADGTG 482
Query: 558 W 558
W
Sbjct: 483 W 483
|
Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/494 (48%), Positives = 318/494 (64%), Gaps = 16/494 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E P GKV MYVCGVT YD HIGHAR V FDV+YRY HLG +V
Sbjct: 3 LRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGLDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G +S R+ +EF +DM L P+ +P+ ++H+ I
Sbjct: 63 TYVRNYTDIDDKIINRANREGVTYDLISERFIKEFDRDMERLGLKLPTCQPKATEHIDEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I ++ ++D FAY+ GDV F V+KF Y +LSGR LED +AG R+ VD RK++P DFA
Sbjct: 123 ISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA ++YW+HNGFV I+SEKMSKSLGNFFTI++V++ Y LR FL+ HYRSPI
Sbjct: 243 EAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSL--------LDAAALKDSIPP--DTVTSINK 425
++S L A + IY+ L E+ L+ +DA++L ++ D TSI+
Sbjct: 303 DFSDQNLTEAEAGLERIYKALAAVEETLAAGNGCTGAPVDASSLNEAEGELFDKTTSISA 362
Query: 426 FHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT-IRNVL 484
F +M DD +T + +A + D ++ +N +L G + SL L K + +
Sbjct: 363 ---RFGEAMDDDFNTALAMAHVFDLVRCVNRVLSETAGASD--NICSLCTLIKAEVAKIA 417
Query: 485 TVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAA 544
VLG+ S+ + L +L+ + D+ D++ + I +RT ARK K++++SD IR LAA
Sbjct: 418 GVLGIFSSKPASFLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFKRSDEIRDQLAA 477
Query: 545 VGIALMDSPVGTTW 558
I L+DS GTTW
Sbjct: 478 KNIVLLDSQQGTTW 491
|
Geobacter sp. (strain FRC-32) (taxid: 316067) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/489 (47%), Positives = 316/489 (64%), Gaps = 5/489 (1%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+++ +E P GKV YVCGVT YDLSHIGHAR + FDV+YRYLR LG+EV
Sbjct: 3 LHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGFEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRNFTDVDDKII RAN+ G D S+++RY F++DM L L P +EP ++++P +
Sbjct: 63 TYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVPGM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I++I ++D G AY+ DV+F ++KFP YG+LSGR++ED AG RV VD+RK+NP DF
Sbjct: 123 IEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLDFV 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP W+SPWGPGRPGWHIECSAM + +LG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I++EKMSKSLGNF TIR V++ HP +R F++ HYRSP+
Sbjct: 243 EAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRSPV 302
Query: 376 NYSVVQLESASERIFYIYQTLHDC-EKALSLLDAAALKDSI---PPDTVTSINKFHNDFL 431
++S + A + + +Y TL E+A + ++ A + ++ P+ I F
Sbjct: 303 DFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQDPELFDQIAALSGAFR 362
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLA-ALEKTIRNVLTVLGLM 490
+M +D +T L L + + L K+ +LA A IR+ VLGL+
Sbjct: 363 EAMDNDFNTAQALGNLFSLQRHLQRFLDKFGRKQLKGPASALARAGADAIRDHALVLGLL 422
Query: 491 STGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALM 550
+ + R +K LTE +V + IE R AR++K + ++D +R+++ GI L
Sbjct: 423 TREPEAFQAEQRSLKIKSTGLTEAEVERCIELRRQARQDKNFAEADRLREEIEKKGIQLE 482
Query: 551 DSPVGTTWR 559
DSP GT WR
Sbjct: 483 DSPAGTRWR 491
|
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/493 (47%), Positives = 309/493 (62%), Gaps = 20/493 (4%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R++E P GKV MYVCG+T YDL H+GHARV V FD++ RYLR G+EV
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +L+ RY + H+D L LPP EPR ++ M I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ M+ Q+LD G+AY+ + GD+Y+ V F YG LSGR LED RAGERV V+ K +P DF
Sbjct: 122 LAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK+AK GEP WESPWGPGRPGWHIECSAMS LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA ++YW+HNGFV ++ EKMSKSLGNFFT+R+V+E YHP LR F++ +HYRSP
Sbjct: 242 SEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NY+ QL++A + +Y L + A L + + F F +M
Sbjct: 302 LNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLS----WEFTDGGDPFVLRFREAM 357
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T LA L N++ H ++A E +L +R++ +LGL++
Sbjct: 358 DDDFNTPEALALL-------NEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGLLAHEP 410
Query: 495 SEVLLQLREKAL--------KRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
+ L R+ A + A L+ D + Q + RTVARKNK++ ++D IR L G
Sbjct: 411 EQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGILKDQG 470
Query: 547 IALMDSPVGTTWR 559
I L D+ GT WR
Sbjct: 471 ITLEDTAAGTLWR 483
|
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 321/492 (65%), Gaps = 12/492 (2%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +E P GKV MYVCGVT YD HIGHAR V FDV+YRYLR LG EV
Sbjct: 3 LRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGLEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G ++S R+ +EF +DM L L P+ +P+ ++H+P I
Sbjct: 63 NYVRNYTDIDDKIINRANREGVAYDAISERFIKEFDRDMAQLGLLLPTSQPKATEHIPEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I ++ ++D GFAY++ GDV F V+KF Y +LS R LED +AG R+ VD RK++P DF
Sbjct: 123 ITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDERKRHPMDFV 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTI++V++ Y LR FL+ HYRSP+
Sbjct: 243 EAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLDKYDSEVLRFFLLSAHYRSPL 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSL--------LDAAALKDSIPPDTVTSINKFH 427
++S L A + IY+ L ++ L+ +DA++L ++ +
Sbjct: 303 DFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEEIDASSLGEA-ERELFDKSGSLP 361
Query: 428 NDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA-LEKTIRNVLTV 486
F +M DD +T + + + D ++ +N +L + K+++ L +L A ++ I + V
Sbjct: 362 LRFREAMDDDFNTALAMGHIFDLVRCVNRVLS--EAKERSNTLSALCAQVKANIGKIADV 419
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
LG+ ++ + +L +L+++ D++ +++ + I +R ARK K++++SD IR L
Sbjct: 420 LGIFTSEPASLLTRLKDRKASELDISVEEIERLITERAAARKAKDFKRSDEIRDFLLGKN 479
Query: 547 IALMDSPVGTTW 558
I L+DS GT+W
Sbjct: 480 IVLLDSAQGTSW 491
|
Geobacter uraniireducens (strain Rf4) (taxid: 351605) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q30ZH8|SYC_DESDG Cysteine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/482 (46%), Positives = 309/482 (64%), Gaps = 3/482 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
LYNT++RK+E P+ EGK +YVCG+T YDL H+GHAR V FDVL RYLRH G +V +
Sbjct: 3 LYNTLTRKKEKFIPQREGKASVYVCGITAYDLCHLGHARSSVAFDVLVRYLRHTGLDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRNFTDVDDKII RA E G ++ +Y FH+DM L CL +EPR + H+ +I
Sbjct: 63 VRNFTDVDDKIIKRAGETGLTSTEVAEKYMAAFHEDMDRLGCLRADIEPRCTQHIGEMIA 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ ++ G AY GDVYF V F YG+LSGR ++D R+G RVA K++P DFAL
Sbjct: 123 LCEDLISKGKAYSTASGDVYFRVRSFASYGKLSGRDVDDMRSGARVAPGEEKEDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WKSAK GEP+WESPWG GRPGWHIECSAMS +L DIHGGG DLVFPHHENEIAQ+
Sbjct: 183 WKSAKPGEPYWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFPHHENEIAQTE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA YW+HNGFV +++EKMSKSLGNF TIR +++ Y P LR FL+ HYRSPI+
Sbjct: 243 AATGKEFARYWVHNGFVQVNAEKMSKSLGNFSTIRDILQGYLPETLRYFLLTKHYRSPID 302
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
++ ++ A + + IYQTL+ E L +A +P + ++ +++ + +M D
Sbjct: 303 FTFDGMDEAEKNLRRIYQTLNLVENELQKTKWSAA--PLPEEVLSEMDETERAWNEAMED 360
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
DL+T L + ++ +N ++ + +K A ++L ++ + VLGL + +E
Sbjct: 361 DLNTAAALGHIFGLVRLVNRIIEDKTMRKSAQARDALLRMQSMMARWGAVLGLFTRQPAE 420
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L ++R+ R D+ +V + +R ARK K++E+SDAIR++LA +G+ + D+P G
Sbjct: 421 FLREMRDCRAARRDVDTARVETLLLERQEARKAKDFERSDAIREELARMGVEVQDTPAGA 480
Query: 557 TW 558
W
Sbjct: 481 AW 482
|
Desulfovibrio desulfuricans (strain G20) (taxid: 207559) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| 359476173 | 571 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.980 | 0.985 | 0.772 | 0.0 | |
| 255548846 | 563 | cysteinyl-tRNA synthetase, putative [Ric | 0.977 | 0.996 | 0.766 | 0.0 | |
| 297826557 | 562 | tRNA synthetase class I (C) family prote | 0.965 | 0.985 | 0.754 | 0.0 | |
| 42569504 | 563 | cysteinyl-tRNA synthetase [Arabidopsis t | 0.973 | 0.992 | 0.753 | 0.0 | |
| 449437168 | 576 | PREDICTED: cysteine--tRNA ligase-like [C | 0.994 | 0.991 | 0.740 | 0.0 | |
| 449517190 | 576 | PREDICTED: cysteine--tRNA ligase-like [C | 0.994 | 0.991 | 0.742 | 0.0 | |
| 224141927 | 493 | predicted protein [Populus trichocarpa] | 0.858 | 1.0 | 0.837 | 0.0 | |
| 261599939 | 582 | cysteinyl tRNA synthetase [Beta vulgaris | 0.987 | 0.974 | 0.725 | 0.0 | |
| 261599941 | 582 | cysteinyl tRNA synthetase [Beta vulgaris | 0.987 | 0.974 | 0.724 | 0.0 | |
| 356515262 | 561 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.965 | 0.987 | 0.722 | 0.0 |
| >gi|359476173|ref|XP_002285478.2| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/581 (77%), Positives = 502/581 (86%), Gaps = 18/581 (3%)
Query: 1 MGSLILTLKCYKPLASIKFSPFINSFHTLQLRPPKPNNRRVF--------RCFSTLNSSP 52
MG+L LKCYKPL ++F P NS T L P ++ +F RCFS++ S
Sbjct: 1 MGTL---LKCYKPLFPLRFIPIPNSVRTSGL--PTHHSHAIFSNSKVCGGRCFSSVKQSQ 55
Query: 53 NVIDDKSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHI 112
+ID+K++G +++ A +LWLYNTMSR++E+ KPKV+G+VGMYVCGVT YDLSHI
Sbjct: 56 PLIDEKNSGGEGVENRRA----ELWLYNTMSRQKEVFKPKVDGRVGMYVCGVTAYDLSHI 111
Query: 113 GHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172
GHARVYV+FDVLYRYLRHL YEV YVRNFTDVDDKIIARANE+GEDPI+LSRRYC+EFH
Sbjct: 112 GHARVYVSFDVLYRYLRHLEYEVNYVRNFTDVDDKIIARANEMGEDPINLSRRYCQEFHV 171
Query: 173 DMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRK 232
DM LHCLPPSVEP VSDHMP IIDMI QI+DN AYRV+GDVYFSVDKFPEYG+LSGRK
Sbjct: 172 DMTYLHCLPPSVEPCVSDHMPQIIDMIKQIIDNDCAYRVEGDVYFSVDKFPEYGRLSGRK 231
Query: 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGH 292
+EDNRAGERVAVDSRKKNPADFALWK+AK+GEPFW+SPWGPGRPGWHIECSAMSAAYLG+
Sbjct: 232 VEDNRAGERVAVDSRKKNPADFALWKAAKKGEPFWDSPWGPGRPGWHIECSAMSAAYLGY 291
Query: 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQ 352
SFDIHGGGMDLVFPHHENEIAQSCAAC S+ISYWIHNGFVTIDSEKMSKSLGNFFTIRQ
Sbjct: 292 SFDIHGGGMDLVFPHHENEIAQSCAACKQSNISYWIHNGFVTIDSEKMSKSLGNFFTIRQ 351
Query: 353 VMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALK 412
V+++YHPLALRLFLIGTHYRSPINYS VQLESAS+R+FYIYQTLHDC+ A+ D K
Sbjct: 352 VIDIYHPLALRLFLIGTHYRSPINYSDVQLESASDRVFYIYQTLHDCQNAMD-QDDMTKK 410
Query: 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLES 472
DS+PP + INKF+NDFL SMSDDLHT VVLAALSDPLKTINDLLHTRKGKKQ +RLES
Sbjct: 411 DSVPPHILDCINKFYNDFLTSMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKQELRLES 470
Query: 473 LAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEY 532
LAALEK IR+VLT+LGLM YSE LLQLREKALKR+ LTED +LQ+IE+RT+ARKNKEY
Sbjct: 471 LAALEKVIRDVLTILGLMPASYSEALLQLREKALKRSKLTEDHILQKIEERTMARKNKEY 530
Query: 533 EKSDAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVAT 573
EKSDAIRKDLAAVGIALMDSP GTTWRPA+PLALQEQ AT
Sbjct: 531 EKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQVAAT 571
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548846|ref|XP_002515479.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223545423|gb|EEF46928.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/573 (76%), Positives = 492/573 (85%), Gaps = 12/573 (2%)
Query: 4 LILTLKCYKPLASIKFSPFINSF--HTLQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNG 61
++ +K YKPL S++ SP ++S R P FR F++L+SS +IDDK NG
Sbjct: 1 MVSVVKWYKPLTSVRLSPPLHSLLRSIPTHRVPTRKRATFFRLFNSLSSSRPLIDDKLNG 60
Query: 62 KTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTF 121
DG P ST+L+LYNTMSR ++L KPKVEGKVGMYVCGVT YDLSHIGHARVYVTF
Sbjct: 61 -VDGTLTP---STELYLYNTMSRNKDLFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTF 116
Query: 122 DVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181
DVLYRYL+HLGY+VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH DMV LHCLP
Sbjct: 117 DVLYRYLKHLGYDVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHNDMVYLHCLP 176
Query: 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGER 241
PS+EP VSDHMP II+MI QILDNG AYR+DGDVYFS+D +PEYG+LSGRKLEDNRAGER
Sbjct: 177 PSIEPCVSDHMPQIINMIKQILDNGCAYRIDGDVYFSIDGYPEYGKLSGRKLEDNRAGER 236
Query: 242 VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301
VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM
Sbjct: 237 VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 296
Query: 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLA 361
DLVFPHHENEIAQSCAAC S+ISYW+HNGFVTI+SEKMSKSLGNFFTIRQV++LYHPLA
Sbjct: 297 DLVFPHHENEIAQSCAACRGSNISYWVHNGFVTINSEKMSKSLGNFFTIRQVIDLYHPLA 356
Query: 362 LRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVT 421
LR FL+GTHYRSP+NYS VQLESASERIFYIYQTLHDCE +S + A KDS+P DT+
Sbjct: 357 LRFFLLGTHYRSPVNYSDVQLESASERIFYIYQTLHDCETVISQHETAFEKDSVPSDTLD 416
Query: 422 SINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIR 481
INKF + F+ SMSDDLHT V+LAALSDPLK IND+LHTRK R++SLAALEK +R
Sbjct: 417 GINKFSDVFVTSMSDDLHTPVLLAALSDPLKIINDMLHTRK------RIQSLAALEKIVR 470
Query: 482 NVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKD 541
+ L+VLGLM T YSEVL QLREKAL+RA LTE+QVLQRIE+RTVARKN++YE+SDAIRKD
Sbjct: 471 DALSVLGLMPTTYSEVLQQLREKALRRAKLTEEQVLQRIEERTVARKNRDYERSDAIRKD 530
Query: 542 LAAVGIALMDSPVGTTWRPALPLALQEQAVATS 574
LA GIALMDSP GT+WRPA+PLA+QEQ A +
Sbjct: 531 LATHGIALMDSPDGTSWRPAIPLAMQEQQAAAT 563
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826557|ref|XP_002881161.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297327000|gb|EFH57420.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/571 (75%), Positives = 484/571 (84%), Gaps = 17/571 (2%)
Query: 1 MGSLILTL-KCYKPLASIKFSPFINSFHTLQ--LRPPKPNNRRVFRCFSTLNSSPNVIDD 57
M S +L L K +P I+FS S +Q LRP K R RCF+TL+S
Sbjct: 1 MASSVLNLFKSCRPFTPIRFSSLPKSQFRIQFPLRPGKETQSR--RCFTTLSS------- 51
Query: 58 KSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARV 117
TDG P S +LWL+NTMSRK+EL KPK+EGKVGMYVCGVT YDLSHIGHARV
Sbjct: 52 ----LTDGG-APISGGKELWLHNTMSRKKELFKPKIEGKVGMYVCGVTAYDLSHIGHARV 106
Query: 118 YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177
YVTFDVL RYL+HLGYEV YVRNFTDVDDKIIARANELGEDPISLSRR+CEEF +DM L
Sbjct: 107 YVTFDVLLRYLKHLGYEVSYVRNFTDVDDKIIARANELGEDPISLSRRFCEEFKRDMEQL 166
Query: 178 HCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNR 237
CL PSV+P VSDH+P I+D+I QILDNG+AY+VDGD+YFSVDKFP YG+LSGRKLEDNR
Sbjct: 167 QCLDPSVQPLVSDHIPQIVDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNR 226
Query: 238 AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297
AGERVAVD+RKK+PADFALWK+AKEGEPFWESPWG GRPGWHIECSAMSAAYLG+SFDIH
Sbjct: 227 AGERVAVDTRKKHPADFALWKTAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIH 286
Query: 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELY 357
GGGMDLVFPHHENEIAQSCAAC++S+ISYWIHNGFVT+DSEKMSKSLGNFFTIRQV++LY
Sbjct: 287 GGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLY 346
Query: 358 HPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPP 417
HPLALRLFL+GTHYRSPINYS LESASERIFYIYQTLHDCE L D+ DS+P
Sbjct: 347 HPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESLLGEKDSTFGNDSVPS 406
Query: 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALE 477
DT+T+IN FH++F+ASMSDDL T V LAA+S+PLKTIND++HTRKGKKQA R ESL ALE
Sbjct: 407 DTLTTINTFHSEFVASMSDDLLTPVTLAAMSEPLKTINDIIHTRKGKKQARREESLKALE 466
Query: 478 KTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDA 537
TIR+VLT+LGLM T YSEVL QL+EKALKRA L E+ VLQR+++RT ARKNKEYE+SDA
Sbjct: 467 TTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLEEEDVLQRVQERTDARKNKEYERSDA 526
Query: 538 IRKDLAAVGIALMDSPVGTTWRPALPLALQE 568
IRKDLA+VGIALMDSP GTTWRPA+PLALQE
Sbjct: 527 IRKDLASVGIALMDSPEGTTWRPAIPLALQE 557
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569504|ref|NP_565717.2| cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|330253408|gb|AEC08502.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/576 (75%), Positives = 482/576 (83%), Gaps = 17/576 (2%)
Query: 1 MGSLILTL-KCYKPLASIKFSPFINSFHTLQ--LRPPKPNNRRVFRCFSTLNSSPNVIDD 57
M S +L L K +P I+FS S +Q LRP K R RCF+TL+S
Sbjct: 1 MASSVLNLFKSCRPFTPIRFSSLPKSQFRIQFPLRPGKETQLR--RCFTTLSSL------ 52
Query: 58 KSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARV 117
TDG P S +LWL+NTMSRK+EL KPKVEGKVGMYVCGVT YDLSHIGHARV
Sbjct: 53 -----TDGG-APISGGKELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARV 106
Query: 118 YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177
YVTFDVL RYL+HLGYEV YVRNFTDVDDKIIARA EL EDPISLSRR+CEEF++DM L
Sbjct: 107 YVTFDVLLRYLKHLGYEVSYVRNFTDVDDKIIARAKELEEDPISLSRRFCEEFNRDMEQL 166
Query: 178 HCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNR 237
CL PSV+PRVSDH+P IID+I QILDNG+AY+VDGD+YFSVDKFP YG+LSGRKLEDNR
Sbjct: 167 QCLDPSVQPRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNR 226
Query: 238 AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297
AGERVAVD+RKK+PADFALWK+AKEGEPFWESPWG GRPGWHIECSAMSAAYLG+SFDIH
Sbjct: 227 AGERVAVDTRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIH 286
Query: 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELY 357
GGGMDLVFPHHENEIAQSCAAC++S+ISYWIHNGFVT+DSEKMSKSLGNFFTIRQV++LY
Sbjct: 287 GGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLY 346
Query: 358 HPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPP 417
HPLALRLFL+GTHYRSPINYS LESASERIFYIYQTLHDCE AL D+ S+P
Sbjct: 347 HPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSVPS 406
Query: 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALE 477
DT+TSIN F +F+ASMSDDL T V LAA+S+PLKTINDL+HTRKGKKQA R ESL ALE
Sbjct: 407 DTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKKQARREESLKALE 466
Query: 478 KTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDA 537
TIR+VLT+LGLM T YSEVL QL+EKALKRA L E+ VLQR+++RT ARKNKEYE+SDA
Sbjct: 467 TTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDARKNKEYERSDA 526
Query: 538 IRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVAT 573
IRKDLA VGIALMDSP GTTWRPA+PLALQE T
Sbjct: 527 IRKDLAKVGIALMDSPEGTTWRPAIPLALQEPVTTT 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437168|ref|XP_004136364.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/579 (74%), Positives = 478/579 (82%), Gaps = 8/579 (1%)
Query: 1 MGSLILTLKCYKPLASIKFSP--FINSFHTLQLRPPKP---NNRRVFRCFSTLNSSPNVI 55
M SL LK Y PL +F+P +F LR N+ F F++ +S +
Sbjct: 1 MASL---LKFYNPLTLTRFTPVSLSQAFLRRTLRNSHFSFFNSATTFARFTSSPTSSQLP 57
Query: 56 DDKSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHA 115
N K + S S++LWL+NTMSRK+E+ KPKVEGKVGMYVCGVT YDLSHIGHA
Sbjct: 58 VSAPNLKEINALRHDSTSSELWLHNTMSRKKEVFKPKVEGKVGMYVCGVTAYDLSHIGHA 117
Query: 116 RVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175
RVYVTFDVLYRYLRHLGYEV YVRNFTDVDDKIIARANELGEDP++LSRRYCEEF +DM+
Sbjct: 118 RVYVTFDVLYRYLRHLGYEVLYVRNFTDVDDKIIARANELGEDPLNLSRRYCEEFRRDMM 177
Query: 176 DLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLED 235
LHCLPPSVEP+VSDHMP IIDMI QILDNG+AY VDGDVYF+VDKFPEYGQLSGRKLED
Sbjct: 178 YLHCLPPSVEPQVSDHMPQIIDMIKQILDNGYAYSVDGDVYFNVDKFPEYGQLSGRKLED 237
Query: 236 NRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295
NRAGERV+VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSA+YLG+SFD
Sbjct: 238 NRAGERVSVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSASYLGYSFD 297
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
IHGGGMDLVFPHHENEIAQSCAAC S++SYW+HNGFVTIDSEKMSKSLGNFFTIRQV++
Sbjct: 298 IHGGGMDLVFPHHENEIAQSCAACRTSNVSYWVHNGFVTIDSEKMSKSLGNFFTIRQVID 357
Query: 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSI 415
LYHPLALRLFL+GTHYRSPINYS + LESAS+RIFYIYQTL DC +S D ++ K I
Sbjct: 358 LYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDCRTVISQEDESSFKGPI 417
Query: 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA 475
P V INKF N FL SMSDD+HT VVLAALSDPLK INDLLHTRKGKKQ R+ESLAA
Sbjct: 418 APSLVEEINKFSNVFLTSMSDDIHTPVVLAALSDPLKIINDLLHTRKGKKQEFRMESLAA 477
Query: 476 LEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKS 535
LEK I NVL++LGLM YSE L QL+EKAL RA +T DQVLQ+IE+R ARKNKEYEKS
Sbjct: 478 LEKIIGNVLSILGLMPASYSEALQQLKEKALTRAKMTNDQVLQKIEERNAARKNKEYEKS 537
Query: 536 DAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVATS 574
D+IR DLAAVGI+LMD P GTTWRP +PLALQE +++
Sbjct: 538 DSIRTDLAAVGISLMDGPNGTTWRPTVPLALQEHQASST 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517190|ref|XP_004165629.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/579 (74%), Positives = 479/579 (82%), Gaps = 8/579 (1%)
Query: 1 MGSLILTLKCYKPLASIKFSPFINSFHTLQ--LRPPKP---NNRRVFRCFSTLNSSPNVI 55
M SL LK Y PL +F+P S L+ LR N+ F F++ +S +
Sbjct: 1 MASL---LKFYNPLTLTRFTPVSLSLAFLRRTLRNSHFSFFNSATTFARFTSSPTSSQLP 57
Query: 56 DDKSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHA 115
N K + S S++LWL+NTMSRK+E+ KPKVEGKVGMYVCGVT YDLSHIGHA
Sbjct: 58 VSAPNLKEINALRHDSTSSELWLHNTMSRKKEVFKPKVEGKVGMYVCGVTAYDLSHIGHA 117
Query: 116 RVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175
RVYVTFDVLYRYLRHLGYEV YVRNFTDVDDKIIARANELGEDP++LSRRYCEEF +DM+
Sbjct: 118 RVYVTFDVLYRYLRHLGYEVLYVRNFTDVDDKIIARANELGEDPLNLSRRYCEEFRRDMM 177
Query: 176 DLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLED 235
LHCLPPSVEP+VSDHMP IIDMI QILDNG+AY VDGDVYF+VDKFPEYGQLSGRKLED
Sbjct: 178 YLHCLPPSVEPQVSDHMPQIIDMIKQILDNGYAYCVDGDVYFNVDKFPEYGQLSGRKLED 237
Query: 236 NRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295
NRAGERV+VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSA+YLG+SFD
Sbjct: 238 NRAGERVSVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSASYLGYSFD 297
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
IHGGGMDLVFPHHENEIAQSCA C S++SYW+HNGFVTIDSEKMSKSLGNFFTIRQV++
Sbjct: 298 IHGGGMDLVFPHHENEIAQSCATCRTSNVSYWVHNGFVTIDSEKMSKSLGNFFTIRQVID 357
Query: 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSI 415
LYHPLALRLFL+GTHYRSPINYS + LESAS+RIFYIYQTL DC +S D ++ K SI
Sbjct: 358 LYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDCRTVVSQEDESSFKGSI 417
Query: 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA 475
P V INKF N FL SMSDD+HT VVLAALSDPLK INDLLHTRKGKKQ R+ESLAA
Sbjct: 418 APSLVEEINKFSNVFLTSMSDDIHTPVVLAALSDPLKIINDLLHTRKGKKQEFRMESLAA 477
Query: 476 LEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKS 535
LEK I NVL++LGLM YSE L QL+EKAL RA +T DQVLQ+IE+R ARKNKEYEKS
Sbjct: 478 LEKIIGNVLSILGLMPASYSEALQQLKEKALTRAKMTNDQVLQKIEERNAARKNKEYEKS 537
Query: 536 DAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVATS 574
D+IR DLAAVGI+LMD P GTTWRP +PLALQE +++
Sbjct: 538 DSIRTDLAAVGISLMDGPNGTTWRPTVPLALQEHQASST 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141927|ref|XP_002324312.1| predicted protein [Populus trichocarpa] gi|222865746|gb|EEF02877.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/493 (83%), Positives = 452/493 (91%)
Query: 82 MSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF 141
MSRK+EL KPKVEGKVGMYVCGVT YDLSHIGHARVYVTFDVL RYL+HLG++V YVRNF
Sbjct: 1 MSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGFDVHYVRNF 60
Query: 142 TDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQ 201
TDVDDKIIARANELGEDPISLS+RYCEEF DMV LHCLPPSVEPRVSDHMP IIDMI +
Sbjct: 61 TDVDDKIIARANELGEDPISLSKRYCEEFLHDMVYLHCLPPSVEPRVSDHMPQIIDMIER 120
Query: 202 ILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261
IL+NG+AYR+DGDVYFSVDK PEYG+LSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK
Sbjct: 121 ILENGYAYRIDGDVYFSVDKLPEYGRLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 180
Query: 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN 321
EGEPFW+SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAAC +
Sbjct: 181 EGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACRD 240
Query: 322 SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQ 381
S+ISYW+HNGFVTIDSEKMSKSLGNFFTIRQV+ LYHPLALRLFL+GTHYRSP+NYS VQ
Sbjct: 241 SNISYWVHNGFVTIDSEKMSKSLGNFFTIRQVINLYHPLALRLFLLGTHYRSPVNYSDVQ 300
Query: 382 LESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTT 441
LESASERIFYIYQTLHDCE LS A KD+IPPDT+ INKFH+ + SMSDDLHT
Sbjct: 301 LESASERIFYIYQTLHDCENILSQHRVAFEKDAIPPDTINDINKFHDTLVTSMSDDLHTP 360
Query: 442 VVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQL 501
V+L+ALSDPLK IND+LHTRKGKKQ R+ES+AALEK +RN L VLGLM Y+E L QL
Sbjct: 361 VLLSALSDPLKIINDMLHTRKGKKQIKRIESIAALEKMVRNALMVLGLMPPTYNEALQQL 420
Query: 502 REKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPA 561
REKAL+RA LTEDQ+LQ+IE+RTVARK+K+YEKSDAIRKDLAA+GIALMDSP GT+WRPA
Sbjct: 421 REKALRRAKLTEDQILQKIEERTVARKDKDYEKSDAIRKDLAALGIALMDSPDGTSWRPA 480
Query: 562 LPLALQEQAVATS 574
+PLALQEQ VA++
Sbjct: 481 IPLALQEQQVAST 493
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|261599939|dbj|BAI45220.1| cysteinyl tRNA synthetase [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/580 (72%), Positives = 477/580 (82%), Gaps = 13/580 (2%)
Query: 4 LILTLKCYKPLASIKFSPFINSFHTLQLRPPKPN-------NRRVFRCFSTLNSSPNVID 56
+++ +C KP SP S LQ P N N+RV R F ++ SS I+
Sbjct: 1 MVVLARCCKPFLPPYLSPLSLSEIPLQFYSPFSNKIRNYAINKRV-RFFCSMGSSQASIN 59
Query: 57 DKSN-----GKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSH 111
+ G ++ + LW+YNTMSRK+E+ KPKV+GKVGMYVCGVT YD SH
Sbjct: 60 GNNGNNNWVGSSNNQQLEGAIKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSH 119
Query: 112 IGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171
IGHAR YVTFD+LYRYL++LGY+VCYVRNFTDVDDKIIARANE+GE+PISLSRR+C+EFH
Sbjct: 120 IGHARAYVTFDILYRYLKYLGYDVCYVRNFTDVDDKIIARANEVGENPISLSRRFCDEFH 179
Query: 172 QDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGR 231
QDM LHCLPPSVEPRVSDHMP IIDMI QI+DNGFAY VDGDVYFSV+KFP+YG+LSGR
Sbjct: 180 QDMSYLHCLPPSVEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGR 239
Query: 232 KLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLG 291
KLEDNRAGERVA+DSRK+NPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMS+ YLG
Sbjct: 240 KLEDNRAGERVAIDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLG 299
Query: 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIR 351
+SFDIHGGGMDL+FPHHENEI QSCAAC S+I YW+HNGFVTI+SEKMSKSLGNFFTIR
Sbjct: 300 YSFDIHGGGMDLMFPHHENEIVQSCAACCESNIRYWVHNGFVTINSEKMSKSLGNFFTIR 359
Query: 352 QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAAL 411
QV+ELYHPLALRLFL+GTHYRSPINYS V LESASERIFYIYQTL D + LS A L
Sbjct: 360 QVIELYHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANL 419
Query: 412 KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLE 471
KDSIP D V+ IN N F+ SMSDDLHT VVLAALSDPLKTINDLLHTRKGKK+ +R+E
Sbjct: 420 KDSIPQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVE 479
Query: 472 SLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKE 531
SLAALEKTI++VLT LGLM + YSE L QLREKALKR +E +V Q+IE+R +ARKNKE
Sbjct: 480 SLAALEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKNKE 539
Query: 532 YEKSDAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAV 571
YEKSDAIRK+LAAVGIALMDSP GTTWRP +P ALQ++ V
Sbjct: 540 YEKSDAIRKELAAVGIALMDSPEGTTWRPVVPTALQQEPV 579
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|261599941|dbj|BAI45221.1| cysteinyl tRNA synthetase [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/580 (72%), Positives = 476/580 (82%), Gaps = 13/580 (2%)
Query: 4 LILTLKCYKPLASIKFSPFINSFHTLQLRPPKPN-------NRRVFRCFSTLNSSPNVID 56
+++ +C KP SP S LQ P N N+RV R F ++ SS I+
Sbjct: 1 MVVLARCCKPFLPPYLSPLSLSEIPLQFYSPFSNKIRNYAINKRV-RFFCSMGSSQASIN 59
Query: 57 DKSN-----GKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSH 111
+ G ++ + LW+YNTMSRK+E+ KPKV+GKVGMYVCGVT YD SH
Sbjct: 60 GNNGNNNWVGSSNNQQLEGAIKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSH 119
Query: 112 IGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171
IGHAR YVTFD+LYRYL++LGY+VCYVRNFTDVDDKIIARANE+GE+PISLSRR+C+EFH
Sbjct: 120 IGHARAYVTFDILYRYLKYLGYDVCYVRNFTDVDDKIIARANEVGENPISLSRRFCDEFH 179
Query: 172 QDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGR 231
QDM LHCLPPSVEPRVSDHMP IIDMI QI+DNGFAY VDGDVYFSV+KFP+YG+LSGR
Sbjct: 180 QDMSYLHCLPPSVEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGR 239
Query: 232 KLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLG 291
KLEDNRAGERVA+DSRK+NPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMS+ YLG
Sbjct: 240 KLEDNRAGERVAIDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLG 299
Query: 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIR 351
+SFDIHGGGMDL+FPHHENEI QSCAAC S+I YW+HNGFVTI+SEKMSKSLGNFFTIR
Sbjct: 300 YSFDIHGGGMDLMFPHHENEIVQSCAACCESNIRYWVHNGFVTINSEKMSKSLGNFFTIR 359
Query: 352 QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAAL 411
QV+ELYHPLALRLFL+GTHYRSPINYS V LESASERIFYIYQTL D + LS A L
Sbjct: 360 QVIELYHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANL 419
Query: 412 KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLE 471
KDSIP D V+ IN N F+ SMSDDLHT VVLAALSDPLKTINDLLHTRKGKK+ +R+E
Sbjct: 420 KDSIPQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVE 479
Query: 472 SLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKE 531
SLAALEKTI++VLT LGLM + YSE L QLREKALKR +E +V Q+IE+R +ARK KE
Sbjct: 480 SLAALEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKYKE 539
Query: 532 YEKSDAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAV 571
YEKSDAIRK+LAAVGIALMDSP GTTWRP +P ALQ++ V
Sbjct: 540 YEKSDAIRKELAAVGIALMDSPEGTTWRPVVPTALQQEPV 579
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515262|ref|XP_003526320.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/570 (72%), Positives = 470/570 (82%), Gaps = 16/570 (2%)
Query: 3 SLILTLKCYKPLASIKFSPFINSFHTLQLRPPKPN----NRRVFRCFSTLNSSPNVIDDK 58
S + LKCY+P S+ F H+ PP+P+ R+ F F +S P + +K
Sbjct: 2 STVSLLKCYRPFFSMLFP------HSA---PPRPHASIFRRKNFPSFCATSSPPPLTAEK 52
Query: 59 SNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVY 118
GK D + A ++WL+NTMS+ +EL KPKV+ KVGMYVCGVT YDLSHIGHARVY
Sbjct: 53 GCGKFDSE---GLALPEVWLHNTMSKTKELFKPKVDSKVGMYVCGVTAYDLSHIGHARVY 109
Query: 119 VTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178
V FD+LYRY +HLG++VCYVRNFTDVDDKIIARA ELGEDPISLSRRYCEEF QDMV L+
Sbjct: 110 VNFDLLYRYFKHLGFQVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFCQDMVTLN 169
Query: 179 CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRA 238
CL PSVEP+VS+HMP IIDMI +IL+NG+AY VDGDVYF+V+KFPEYG+LS R LEDNRA
Sbjct: 170 CLSPSVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYFNVEKFPEYGKLSSRDLEDNRA 229
Query: 239 GERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHG 298
GERVAVDSRKKNPADFALWKSAK GEPFWES WGPGRPGWHIECSAMSAAYLG+SFDIHG
Sbjct: 230 GERVAVDSRKKNPADFALWKSAKPGEPFWESRWGPGRPGWHIECSAMSAAYLGYSFDIHG 289
Query: 299 GGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYH 358
GG+DLVFPHHENEIAQSCAAC S IS W+HNGFVTIDS KMSKSLGNFFTIRQV+++YH
Sbjct: 290 GGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYH 349
Query: 359 PLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPD 418
PLALR FL+ HYRSPINYS +QLESAS+R+FYIY+TLH+CE L+ D KDSIPPD
Sbjct: 350 PLALRYFLMSAHYRSPINYSNIQLESASDRVFYIYETLHECESFLNQHDQTIRKDSIPPD 409
Query: 419 TVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEK 478
T+ I+KFH+ FL SMSDDLHT VVLA +SDPLK+INDLLHTRKGKKQ R+ESL+ALEK
Sbjct: 410 TLDIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLSALEK 469
Query: 479 TIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAI 538
++R+VLTVLGLM Y EVL QL+EKALKRA+LTED VLQ+IE+R AR KEY KSDAI
Sbjct: 470 SVRDVLTVLGLMPASYFEVLQQLKEKALKRANLTEDDVLQKIEERAAARIQKEYAKSDAI 529
Query: 539 RKDLAAVGIALMDSPVGTTWRPALPLALQE 568
RKDLA VGI LMDSP GTTWRPA+PL LQE
Sbjct: 530 RKDLAVVGITLMDSPNGTTWRPAIPLPLQE 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| TAIR|locus:2042521 | 563 | SYCO ARATH "cysteinyl t-RNA sy | 0.973 | 0.992 | 0.746 | 3.4e-228 | |
| UNIPROTKB|Q0IZQ2 | 569 | Os09g0556500 "Os09g0556500 pro | 0.921 | 0.929 | 0.670 | 1.1e-197 | |
| TAIR|locus:2152237 | 511 | AT5G38830 "AT5G38830" [Arabido | 0.851 | 0.956 | 0.562 | 1e-146 | |
| UNIPROTKB|Q7G2N5 | 491 | LOC_Os10g32570 "tRNA synthetas | 0.468 | 0.547 | 0.664 | 3.3e-145 | |
| TAIR|locus:2078406 | 489 | AT3G56300 "AT3G56300" [Arabido | 0.520 | 0.611 | 0.638 | 1.2e-132 | |
| UNIPROTKB|A8JCV0 | 637 | CHLREDRAFT_153062 "Cysteinyl-t | 0.435 | 0.392 | 0.623 | 6.4e-128 | |
| UNIPROTKB|Q747A2 | 481 | cysS "Cysteine--tRNA ligase" [ | 0.831 | 0.991 | 0.464 | 4.6e-112 | |
| TIGR_CMR|GSU_3365 | 481 | GSU_3365 "cysteinyl-tRNA synth | 0.831 | 0.991 | 0.464 | 4.6e-112 | |
| TIGR_CMR|SO_1791 | 459 | SO_1791 "cysteinyl-tRNA synthe | 0.658 | 0.823 | 0.510 | 4.3e-111 | |
| UNIPROTKB|O67163 | 495 | cysS "Cysteine--tRNA ligase" [ | 0.841 | 0.975 | 0.429 | 1.2e-106 |
| TAIR|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
Identities = 430/576 (74%), Positives = 477/576 (82%)
Query: 1 MGSLILTL-KCYKPLASIKFSPFINSFHTLQ--LRPPKPNNRRVFRCFSTLNSSPNVIDD 57
M S +L L K +P I+FS S +Q LRP K R RCF+TL+S
Sbjct: 1 MASSVLNLFKSCRPFTPIRFSSLPKSQFRIQFPLRPGKETQLR--RCFTTLSSL------ 52
Query: 58 KSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARV 117
TDG P S +LWL+NTMSRK+EL KPKVEGKVGMYVCGVT YDLSHIGHARV
Sbjct: 53 -----TDGG-APISGGKELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARV 106
Query: 118 YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177
YVTFDVL RYL+HLGYEV YVRNFTDVDDKIIARA EL EDPISLSRR+CEEF++DM L
Sbjct: 107 YVTFDVLLRYLKHLGYEVSYVRNFTDVDDKIIARAKELEEDPISLSRRFCEEFNRDMEQL 166
Query: 178 HCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNR 237
CL PSV+PRVSDH+P IID+I QILDNG+AY+VDGD+YFSVDKFP YG+LSGRKLEDNR
Sbjct: 167 QCLDPSVQPRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNR 226
Query: 238 AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297
AGERVAVD+RKK+PADFALWK+AKEGEPFWESPWG GRPGWHIECSAMSAAYLG+SFDIH
Sbjct: 227 AGERVAVDTRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIH 286
Query: 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELY 357
GGGMDLVFPHHENEIAQSCAAC++S+ISYWIHNGFVT+DSEKMSKSLGNFFTIRQV++LY
Sbjct: 287 GGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLY 346
Query: 358 HPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPP 417
HPLALRLFL+GTHYRSPINYS LESASERIFYIYQTLHDCE +P
Sbjct: 347 HPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSVPS 406
Query: 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALE 477
DT+TSIN F +F+ASMSDDL T V LAA+S+PLKTINDL+HTRKGKKQA R ESL ALE
Sbjct: 407 DTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKKQARREESLKALE 466
Query: 478 KTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDA 537
TIR+VLT+LGLM T YSEVL QL+EKALKRA L E+ VLQR+++RT ARKNKEYE+SDA
Sbjct: 467 TTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDARKNKEYERSDA 526
Query: 538 IRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVAT 573
IRKDLA VGIALMDSP GTTWRPA+PLALQE T
Sbjct: 527 IRKDLAKVGIALMDSPEGTTWRPAIPLALQEPVTTT 562
|
|
| UNIPROTKB|Q0IZQ2 Os09g0556500 "Os09g0556500 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
Identities = 368/549 (67%), Positives = 435/549 (79%)
Query: 27 HTLQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTMSRKR 86
H L PKP++ F F++ SNG PA + +L LYNT SR++
Sbjct: 39 HRLYSHSPKPSSSAAFSAFASA----------SNGA------PAGRARELHLYNTKSRRK 82
Query: 87 ELVKPKVEG-KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
EL +P+V G +VGMYVCGVTPYD SHIGHAR YV FDVLYRYLR+L ++V YVRNFTD+D
Sbjct: 83 ELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYLDHKVRYVRNFTDID 142
Query: 146 DKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDN 205
DKIIARAN+LGEDP SLS+RY ++F DM +LHCLPPSVEPRVSDH+ II+MI QI+DN
Sbjct: 143 DKIIARANQLGEDPFSLSKRYSDDFLSDMANLHCLPPSVEPRVSDHIDQIINMIKQIIDN 202
Query: 206 GFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEP 265
AY + GDVYFSV+ FPEYG LSGRKL+DNRAGERVAVD RKKNPADFALWK+AK+GEP
Sbjct: 203 DCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRAGERVAVDERKKNPADFALWKAAKDGEP 262
Query: 266 FWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHIS 325
W+SPWGPGRPGWHIECSAMSA YLGHSFDIHGGG DL+FPHHENEIAQS AAC +S I+
Sbjct: 263 SWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLIFPHHENEIAQSRAACCDSSIN 322
Query: 326 YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
YWIHNGFV ++S+KMSKSLGNF TIR+V ELYHPLALR+FL+GTHYRSPINY++ QL A
Sbjct: 323 YWIHNGFVNVNSQKMSKSLGNFVTIRKVTELYHPLALRMFLLGTHYRSPINYTIEQLNVA 382
Query: 386 SERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASMSDDLHTTVVLA 445
S+R++Y YQTL DCE +P +T I K H++F SMSDDLHT+V LA
Sbjct: 383 SDRLYYTYQTLQDCEESCQQHQSKAGDP-LPVNTTNCIQKLHDEFETSMSDDLHTSVALA 441
Query: 446 ALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKA 505
A+S+PLK +NDLLHTRKGKKQ RLESL+A+E+ IR VL+VLGL+ + Y E L QLREKA
Sbjct: 442 AISEPLKVMNDLLHTRKGKKQEKRLESLSAMEEKIRMVLSVLGLLPSSYYEALQQLREKA 501
Query: 506 LKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPALPLA 565
L+RA +TE+QVLQ+IE+RT ARK K+YEKSD IRK+LAAVGIALMD P GTTWRP++PL+
Sbjct: 502 LRRASMTEEQVLQKIEERTSARKAKQYEKSDEIRKELAAVGIALMDGPDGTTWRPSVPLS 561
Query: 566 LQEQAVATS 574
EQ V S
Sbjct: 562 --EQGVVAS 568
|
|
| TAIR|locus:2152237 AT5G38830 "AT5G38830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1433 (509.5 bits), Expect = 1.0e-146, P = 1.0e-146
Identities = 280/498 (56%), Positives = 353/498 (70%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
+L LYNTM++++E++ P GK+G+YVCG+T YD SHIGHAR V+FDVLYRYL+HL Y+
Sbjct: 7 ELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLDYD 66
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V +VRNFTDVDDKII RAN+ GEDP+ LS R+C+E+ DM L CLPP+ +PRVS+HM +
Sbjct: 67 VTFVRNFTDVDDKIIDRANKNGEDPLDLSNRFCDEYLVDMGALQCLPPTHQPRVSEHMDN 126
Query: 195 IIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
II MI +I++ Y V+GDV+FSVDK P YG+LSG+ LE RAGERVAVDSRK+NPADF
Sbjct: 127 IIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAVDSRKRNPADF 186
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
ALWK+AK EP WESPWGPGRPGWHIECSAMS YL FDIHGGG DL FPHHENEIAQ
Sbjct: 187 ALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLKFPHHENEIAQ 246
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
+CAAC +S ++YW+HNG VTI++EKM+KS NF TIR++ YHPLALR FL+ YRSP
Sbjct: 247 TCAACEDSGVNYWLHNGHVTINNEKMAKSKHNFKTIREITASYHPLALRHFLMSAQYRSP 306
Query: 375 INYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTS----INKFHNDF 430
++++ QLES+SE ++Y+YQTL D + + I K +F
Sbjct: 307 LSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSEDGGKSEQTAEGKDIIKKLKTEF 366
Query: 431 LASMSDDLHTTVVLA-ALSDPLKTINDLLHTRKG--KKQAMR-LESLAALEKTIRNVLTV 486
+ M DDL+T +L A D LK IN L K KKQ M L SL +EK R VL V
Sbjct: 367 ESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQKKQRMSMLVSLVEIEKAAREVLDV 426
Query: 487 LGLMST-GYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAV 545
LGL++T Y+E+L +++ K L RA++ E+ + Q IE+R ARKNK++ KSD IR+ L
Sbjct: 427 LGLLTTLSYAEILKEMKLKTLIRAEIGEEGISQLIEERITARKNKDFAKSDEIREKLTRK 486
Query: 546 GIALMDSPVGTTWRPALP 563
GIALMD T WRP P
Sbjct: 487 GIALMDIGKETVWRPCFP 504
|
|
| UNIPROTKB|Q7G2N5 LOC_Os10g32570 "tRNA synthetase class I family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 180/271 (66%), Positives = 219/271 (80%)
Query: 61 GKTDGDDKPASA--STQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVY 118
G++ G+++P + +L L++T ++ +P+VEGKV MYVCGVTPYD SH+GHAR Y
Sbjct: 5 GRSVGEEEPRGKRPAAELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAY 64
Query: 119 VTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178
V FDVL+RYL++LGYEV YVRNFTD+DDKII RANE GED +SLS R+ +EFH+DM +L
Sbjct: 65 VAFDVLFRYLKYLGYEVNYVRNFTDIDDKIIKRANEAGEDALSLSSRFIDEFHRDMYELQ 124
Query: 179 CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRA 238
CLPP+ EPRV+ H+ IID+IT+I+DNG AY ++GDVYFSVD FP+Y LSGRK++ NR
Sbjct: 125 CLPPTHEPRVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRP 184
Query: 239 GERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHG 298
G RVAVD+RK+NPADFALWKSAKEGEP WESPWG GRPGWHIECSAMSA YLG+ FDIHG
Sbjct: 185 GTRVAVDARKRNPADFALWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNIFDIHG 244
Query: 299 GGMDLVFPHHENEIAQSCAACNNSHISYWIH 329
GG DL+FPHHENE+AQS AA S I H
Sbjct: 245 GGKDLIFPHHENELAQSQAAYPESEIISLYH 275
|
|
| TAIR|locus:2078406 AT3G56300 "AT3G56300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
Identities = 201/315 (63%), Positives = 241/315 (76%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNTM++ +E+ KP GK+G+YVCG+T YD SHIGHAR V+FD+LYRYLRHLGY+V
Sbjct: 11 LTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRYLRHLGYQV 70
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRNFTDVDDK A GE P+ LS R+CEE+ DM L CL P+ +PRVSDHM I
Sbjct: 71 TYVRNFTDVDDK----AKNCGEKPLDLSNRFCEEYLLDMAALQCLLPTHQPRVSDHMEQI 126
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I MI +I++NG Y V GDV+FSVDK P YGQLSG++L+ +AG+RVAVDSRK+NPADFA
Sbjct: 127 IKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRLDHTQAGKRVAVDSRKRNPADFA 186
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
L K+AK GEP WESPWG GRPGWHIE FDIHGGG DL FPHHENEIAQ+
Sbjct: 187 LRKAAKSGEPSWESPWGHGRPGWHIE------------FDIHGGGADLKFPHHENEIAQT 234
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
CAAC +S ++YW+HNG VT ++ KM KSL NFFTIRQ+ YHPLALR FL+ YRSP+
Sbjct: 235 CAACEDSGVNYWLHNGHVTNNNVKMGKSLNNFFTIRQIAANYHPLALRHFLMSAQYRSPL 294
Query: 376 NYSVVQLESASERIF 390
NYSV QLES+S+ ++
Sbjct: 295 NYSVSQLESSSDALY 309
|
|
| UNIPROTKB|A8JCV0 CHLREDRAFT_153062 "Cysteinyl-tRNA synthetase" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 6.4e-128, Sum P(3) = 6.4e-128
Identities = 159/255 (62%), Positives = 194/255 (76%)
Query: 70 ASASTQLWLYNTMSRKRELVKPKV-EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYL 128
A ++ +NTMS+ +EL +P++ +G V MYVCGVT YD SHIGHARVYV FDVLYR+L
Sbjct: 30 AELRERVTFFNTMSKSKELFRPRLSDGSVSMYVCGVTVYDYSHIGHARVYVAFDVLYRFL 89
Query: 129 RHL-GYEVCYVRNFTDVDDKIIARANEL--GEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
GY+V YVRNFTD+DDKIIARA + G + L+ R+ +EF++DM L+ LPP++E
Sbjct: 90 SAACGYKVTYVRNFTDIDDKIIARAQQARSGVETSELTERFIDEFNKDMAALNVLPPALE 149
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDG-DVYFSVDKFPEYGQLSGRKLEDNRAGERVAV 244
PR + +P +I IT I+ NG AY VDG DV+F V P YG+LSGR+ EDNRAGERVAV
Sbjct: 150 PRATAFVPQMISTITDIIANGHAYAVDGGDVFFDVASLPGYGRLSGRQQEDNRAGERVAV 209
Query: 245 DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
DSRK++PADFALWK+AK GEP W SPWGPGRPGWHIECS+M +G DIHGGG DLV
Sbjct: 210 DSRKRSPADFALWKAAKPGEPAWPSPWGPGRPGWHIECSSMIRELMGPVIDIHGGGRDLV 269
Query: 305 FPHHENEIAQSCAAC 319
FPHHENE+AQS AAC
Sbjct: 270 FPHHENELAQSQAAC 284
|
|
| UNIPROTKB|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 225/484 (46%), Positives = 303/484 (62%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E G+V MYVCGVT YD HIGHAR V FD++YRYLRH GYEV
Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RAN+ G +S R+ EF +DM L P+ +P+ ++H+ +
Sbjct: 63 TYVRNYTDVDDKIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIAEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I +++ GFAY DGDVYFSV+ F +Y +LS R LE+ +AG R+ V +K++P DFA
Sbjct: 123 IQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP+W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA YWIHNGFV I++EKMSKSLGNFFTI++V+E Y LR FL+ HYRSPI
Sbjct: 243 EAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASMS 435
++S L+ A+ + IY L + I + F +M
Sbjct: 303 DFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGR--IDEELAEKAAGLPTRFREAMD 360
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L + D ++ +N +L +G+ + LA+ + I V VLGL ++
Sbjct: 361 DDFNTAQALGYVFDLVRAVNRVL--AEGE---IDRAVLASAREAIDRVGAVLGLFTSEPG 415
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+ +L+ + + ++ + IE+R ARK +++ ++D IR LAA GI L+DS G
Sbjct: 416 AFVERLKSRKAAALPIEAAEIERLIEERNAARKARDFRRADEIRDTLAAQGILLLDSAQG 475
Query: 556 TTWR 559
TTW+
Sbjct: 476 TTWK 479
|
|
| TIGR_CMR|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 225/484 (46%), Positives = 303/484 (62%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E G+V MYVCGVT YD HIGHAR V FD++YRYLRH GYEV
Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RAN+ G +S R+ EF +DM L P+ +P+ ++H+ +
Sbjct: 63 TYVRNYTDVDDKIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIAEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I +++ GFAY DGDVYFSV+ F +Y +LS R LE+ +AG R+ V +K++P DFA
Sbjct: 123 IQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP+W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA YWIHNGFV I++EKMSKSLGNFFTI++V+E Y LR FL+ HYRSPI
Sbjct: 243 EAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASMS 435
++S L+ A+ + IY L + I + F +M
Sbjct: 303 DFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGR--IDEELAEKAAGLPTRFREAMD 360
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L + D ++ +N +L +G+ + LA+ + I V VLGL ++
Sbjct: 361 DDFNTAQALGYVFDLVRAVNRVL--AEGE---IDRAVLASAREAIDRVGAVLGLFTSEPG 415
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+ +L+ + + ++ + IE+R ARK +++ ++D IR LAA GI L+DS G
Sbjct: 416 AFVERLKSRKAAALPIEAAEIERLIEERNAARKARDFRRADEIRDTLAAQGILLLDSAQG 475
Query: 556 TTWR 559
TTW+
Sbjct: 476 TTWK 479
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| TIGR_CMR|SO_1791 SO_1791 "cysteinyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1003 (358.1 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 201/394 (51%), Positives = 254/394 (64%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GKVGMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TD+DDKII RANE ED +L+ R E H+D L+ P EPR + H+ I
Sbjct: 62 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMKRPDFEPRATLHIAEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ ++L G AY DGDV FSV FPEYG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 122 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V ID EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLSHYDAETVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASM 434
INYS L+ A + +Y + D + P + +F F A+M
Sbjct: 302 INYSEENLKQARAALERLYTAIKDVDLTVAAA---------PAE------EFVAKFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAM 468
DD +T + L D ++ IN L T + A+
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRLKLTDMAEASAL 380
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| UNIPROTKB|O67163 cysS "Cysteine--tRNA ligase" [Aquifex aeolicus VF5 (taxid:224324)] | Back alignment and assigned GO terms |
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Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 210/489 (42%), Positives = 304/489 (62%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S K E P KV +Y CGVT YD SH+GH R + FDV R+L HLGY+V
Sbjct: 3 LRIYNTLSGKVEEFVPINPPKVLIYTCGVTVYDDSHVGHGRSLIVFDVFRRFLEHLGYQV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+VRNFTDVDDKII RA + D ++++ RY ++ DM ++ P VEPRV++H+P I
Sbjct: 63 KFVRNFTDVDDKIINRAKQECTDFMTIADRYIARYYVDMENIRVRPADVEPRVTEHIPEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I++I ++++ G+AY V+GDVYFSV KF +YG+LS R +E+ AG RV +K++P DFA
Sbjct: 123 IEVIQKLVEKGYAYVVEGDVYFSVKKFKDYGKLSKRDIEELIAGARVEPSEKKRDPLDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK++K GEP W+SPWG GRPGWH EC AM +LG + DIHGGG+DLVFPHHENEIAQ+
Sbjct: 183 LWKASKAGEPAWDSPWGKGRPGWHTECVAMVFKHLGETIDIHGGGLDLVFPHHENEIAQA 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
A YW+HNG VT+ +KMSKSLGN+ T+R+V YHP LRL ++ THYRSP+
Sbjct: 243 EAITGKPFARYWMHNGLVTVGGQKMSKSLGNYVTLREVYTKYHPDVLRLLVLFTHYRSPL 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASMS 435
++S ++E + + + D E P + +F +F AS+S
Sbjct: 303 DFSWEKMEETLKAYERLKNAIEDLELLKKLQVVESKEGGTHP-LYEQVKEFEENFYASLS 361
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTR--KGKKQAMRLESLAALEKTIRNVLT-VLGLMST 492
DD +T L+ + + +N + + +GK L + K++ N + + GL+
Sbjct: 362 DDFNTPEALSHVYKLVGELNKVKNKAYSEGKITDRELSAYEFASKSLLNTMKKIFGLLED 421
Query: 493 GYSEVLLQ-LREKALKRADLTEDQVLQ-RIEDRTVARKNKEYEKSDAIRKDLAAVGIALM 550
Y E ++ + E+ L+ + +++++Q IE R +ARK K ++ +D IR L +GI L
Sbjct: 422 LYPECKVERVVERELEAGQVFDEKLIQILIEARNIARKEKVFKVADYIRDKLKELGIVLE 481
Query: 551 DSPVGTTWR 559
D+P GT W+
Sbjct: 482 DTPAGTKWK 490
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6AJ23 | SYC_DESPS | 6, ., 1, ., 1, ., 1, 6 | 0.4656 | 0.8344 | 0.9795 | yes | no |
| Q250Q6 | SYC_DESHY | 6, ., 1, ., 1, ., 1, 6 | 0.4494 | 0.8188 | 0.9853 | yes | no |
| C6BS23 | SYC_DESAD | 6, ., 1, ., 1, ., 1, 6 | 0.4336 | 0.8344 | 0.9876 | yes | no |
| B4UGC3 | SYC_ANASK | 6, ., 1, ., 1, ., 1, 6 | 0.4906 | 0.8066 | 0.9625 | yes | no |
| C6E7P0 | SYC_GEOSM | 6, ., 1, ., 1, ., 1, 6 | 0.4558 | 0.8240 | 0.9854 | yes | no |
| Q5JD45 | SYC_PYRKO | 6, ., 1, ., 1, ., 1, 6 | 0.4481 | 0.8153 | 0.9831 | yes | no |
| B9LZV4 | SYC_GEOSF | 6, ., 1, ., 1, ., 1, 6 | 0.4838 | 0.8327 | 0.9676 | yes | no |
| Q1QC19 | SYC_PSYCK | 6, ., 1, ., 1, ., 1, 6 | 0.4375 | 0.8310 | 0.9774 | yes | no |
| Q72BQ5 | SYC_DESVH | 6, ., 1, ., 1, ., 1, 6 | 0.4586 | 0.8310 | 0.9835 | yes | no |
| B6YUQ3 | SYC_THEON | 6, ., 1, ., 1, ., 1, 6 | 0.4554 | 0.8135 | 0.9810 | yes | no |
| A5G949 | SYC_GEOUR | 6, ., 1, ., 1, ., 1, 6 | 0.4654 | 0.8362 | 0.9716 | yes | no |
| C5A739 | SYC_THEGJ | 6, ., 1, ., 1, ., 1, 6 | 0.4502 | 0.8153 | 0.9831 | yes | no |
| Q747A2 | SYC_GEOSL | 6, ., 1, ., 1, ., 1, 6 | 0.4669 | 0.8310 | 0.9916 | yes | no |
| Q39ZL8 | SYC_GEOMG | 6, ., 1, ., 1, ., 1, 6 | 0.4855 | 0.8379 | 0.9917 | yes | no |
| Q3A8C9 | SYC_PELCD | 6, ., 1, ., 1, ., 1, 6 | 0.4753 | 0.8275 | 0.9875 | yes | no |
| B8JDH1 | SYC_ANAD2 | 6, ., 1, ., 1, ., 1, 6 | 0.4906 | 0.8066 | 0.9625 | yes | no |
| A0L4P8 | SYC_MAGSM | 6, ., 1, ., 1, ., 1, 6 | 0.4613 | 0.8275 | 0.9693 | yes | no |
| Q4FRZ9 | SYC_PSYA2 | 6, ., 1, ., 1, ., 1, 6 | 0.4464 | 0.8327 | 0.9795 | yes | no |
| B5YID4 | SYC_THEYD | 6, ., 1, ., 1, ., 1, 6 | 0.4503 | 0.8188 | 0.9650 | yes | no |
| Q3J8Y9 | SYC_NITOC | 6, ., 1, ., 1, ., 1, 6 | 0.4787 | 0.8240 | 0.9752 | yes | no |
| B0TC35 | SYC_HELMI | 6, ., 1, ., 1, ., 1, 6 | 0.4565 | 0.8188 | 0.9771 | yes | no |
| A7HDA1 | SYC_ANADF | 6, ., 1, ., 1, ., 1, 6 | 0.4864 | 0.8048 | 0.9585 | yes | no |
| C4XSW5 | SYC_DESMR | 6, ., 1, ., 1, ., 1, 6 | 0.4607 | 0.8379 | 0.9917 | yes | no |
| B5EEK6 | SYC_GEOBB | 6, ., 1, ., 1, ., 1, 6 | 0.4590 | 0.8222 | 0.9833 | yes | no |
| Q2IQG7 | SYC_ANADE | 6, ., 1, ., 1, ., 1, 6 | 0.4927 | 0.8066 | 0.9625 | yes | no |
| B8G1U2 | SYC_DESHD | 6, ., 1, ., 1, ., 1, 6 | 0.4494 | 0.8188 | 0.9853 | yes | no |
| A1VDQ5 | SYC_DESVV | 6, ., 1, ., 1, ., 1, 6 | 0.4607 | 0.8310 | 0.9835 | yes | no |
| B8DKL0 | SYC_DESVM | 6, ., 1, ., 1, ., 1, 6 | 0.4496 | 0.8257 | 0.9773 | yes | no |
| A0LIR9 | SYC_SYNFM | 6, ., 1, ., 1, ., 1, 6 | 0.4703 | 0.8432 | 0.9817 | yes | no |
| B3E1P0 | SYC_GEOLS | 6, ., 1, ., 1, ., 1, 6 | 0.4979 | 0.8414 | 0.9917 | yes | no |
| A5WEW9 | SYC_PSYWF | 6, ., 1, ., 1, ., 1, 6 | 0.4612 | 0.8240 | 0.9366 | yes | no |
| A1AK01 | SYC_PELPD | 6, ., 1, ., 1, ., 1, 6 | 0.4826 | 0.8397 | 0.9776 | yes | no |
| Q30ZH8 | SYC_DESDG | 6, ., 1, ., 1, ., 1, 6 | 0.4605 | 0.8344 | 0.9876 | yes | no |
| A5D5M0 | SYC_PELTS | 6, ., 1, ., 1, ., 1, 6 | 0.4502 | 0.8344 | 0.9896 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 6.1.1.16 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00032763001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (571 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00022843001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa) | • | • | • | • | 0.852 | ||||
 | GSVIVG00036298001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa) | • | • | 0.839 | ||||||
 | GSVIVG00006883001 | SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa) | • | 0.768 | |||||||
 | GSVIVG00002540001 | RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa) | • | • | 0.696 | ||||||
 | GSVIVG00028238001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (516 aa) | • | • | 0.693 | ||||||
 | GSVIVG00016648001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa) | • | • | 0.681 | ||||||
 | GSVIVG00037704001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (529 aa) | • | • | 0.677 | ||||||
 | GSVIVG00035363001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa) | • | • | 0.660 | ||||||
 | GSVIVG00002216001 | SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa) | • | 0.610 | |||||||
 | GSVIVG00000425001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa) | • | • | 0.608 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 574 | |||
| PLN02946 | 557 | PLN02946, PLN02946, cysteine-tRNA ligase | 0.0 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 0.0 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 0.0 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 0.0 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 1e-161 | |
| PRK14535 | 699 | PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi | 1e-137 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro | 1e-130 | |
| PRK14536 | 490 | PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi | 1e-121 | |
| PRK12418 | 384 | PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro | 6e-99 | |
| TIGR03447 | 411 | TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi | 6e-97 | |
| PRK14534 | 481 | PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi | 4e-77 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 2e-58 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 3e-53 | |
| cd07963 | 156 | cd07963, Anticodon_Ia_Cys, Anticodon-binding domai | 2e-24 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 1e-17 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-09 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 5e-08 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 9e-08 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-07 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 6e-07 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 3e-06 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 3e-06 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 5e-06 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 5e-06 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 1e-05 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 1e-05 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 2e-05 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 3e-05 | |
| PRK00750 | 510 | PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | 4e-05 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 9e-05 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 3e-04 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 3e-04 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 4e-04 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 5e-04 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 7e-04 | |
| smart00840 | 56 | smart00840, DALR_2, This DALR domain is found in c | 0.001 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 0.002 | |
| pfam01921 | 357 | pfam01921, tRNA-synt_1f, tRNA synthetases class I | 0.003 | |
| COG1384 | 521 | COG1384, LysS, Lysyl-tRNA synthetase (class I) [Tr | 0.003 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.003 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 0.004 | |
| cd00674 | 353 | cd00674, LysRS_core_class_I, catalytic core domain | 0.004 |
| >gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase | Back alignment and domain information |
|---|
Score = 1034 bits (2674), Expect = 0.0
Identities = 451/567 (79%), Positives = 488/567 (86%), Gaps = 16/567 (2%)
Query: 9 KCYKPLASIKFSPFINS-FHT-LQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGD 66
K +PL ++ S S LRPPK R+ CF + ++ +
Sbjct: 5 KSCRPLTPLRLSSPPRSQLRIAFPLRPPK--ERQYRSCFFSASAL------------ASN 50
Query: 67 DKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYR 126
PAS +L LYNTMSRK+EL KPKVEGKVGMYVCGVT YDLSHIGHARVYVTFDVLYR
Sbjct: 51 GAPASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYR 110
Query: 127 YLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEP 186
YL+HLGYEV YVRNFTDVDDKIIARANELGEDPISLSRRYCEEF DM LHCLPPSVEP
Sbjct: 111 YLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEP 170
Query: 187 RVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDS 246
RVSDH+P IIDMI QILDNG AYRVDGDVYFSVDKFPEYG+LSGRKLEDNRAGERVAVDS
Sbjct: 171 RVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDS 230
Query: 247 RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306
RKKNPADFALWK+AKEGEPFW+SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP
Sbjct: 231 RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 290
Query: 307 HHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
HHENEIAQSCAAC +S+ISYWIHNGFVT+DSEKMSKSLGNFFTIRQV++LYHPLALRLFL
Sbjct: 291 HHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFL 350
Query: 367 IGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKF 426
+GTHYRSPINYS VQLESASERIFYIYQTLHDCE++L D+ KDS+PPDT+ INKF
Sbjct: 351 LGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKF 410
Query: 427 HNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTV 486
H++F+ SMSDDLHT V LAALS+PLKTINDLLHTRKGKKQ RLESLAALEK IR+VL+V
Sbjct: 411 HDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRDVLSV 470
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
LGLM T YSE L QLREKAL+RA LTE+QVLQ+IE+RTVARKNKEYEKSDAIRKDLAAVG
Sbjct: 471 LGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVG 530
Query: 547 IALMDSPVGTTWRPALPLALQEQAVAT 573
IALMDSP GTTWRPA+PLALQEQ AT
Sbjct: 531 IALMDSPDGTTWRPAIPLALQEQVAAT 557
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Length = 557 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 714 bits (1845), Expect = 0.0
Identities = 243/485 (50%), Positives = 313/485 (64%), Gaps = 25/485 (5%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L +YNT++R++E KP GKV MYVCG T YD +HIGHAR +V FDVL RYLR+LGY+
Sbjct: 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YVRN TD+DDKII RANE GE L+ RY FH+DM L+ LPP +EPR ++H+P
Sbjct: 62 VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121
Query: 195 IIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
II++I +++D G AY DGDVYF V KFP+YG+LSGR L++ +AG RV V K++P DF
Sbjct: 122 IIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
ALWK+AK GEP WESPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 ALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA +YW+HNGFVT++ EKMSKSLGNFFTIR +++ Y P LR FL+ HYRSP
Sbjct: 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+N+S LE A + + +Y L + + + +F F+ +M
Sbjct: 302 LNFSEEALEQAKKALERLYNALAE-----------TALGEDDEALLAELEEFKERFIEAM 350
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T LA L + + IN L + E+ AAL +R + VLGL
Sbjct: 351 DDDFNTPEALAVLFELAREINRAL-------ETKDKEAAAALAALLRALADVLGLEQD-- 401
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ +L + ++ IE+R ARK K++ +DAIR +LAA+GI L D+P
Sbjct: 402 -----EEALFEAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPD 456
Query: 555 GTTWR 559
GTTWR
Sbjct: 457 GTTWR 461
|
Length = 463 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 633 bits (1635), Expect = 0.0
Identities = 238/489 (48%), Positives = 309/489 (63%), Gaps = 31/489 (6%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L LYNT++R++E P GKV MYVCG T YD +HIGHAR YV FDVL RYLR+LGY+
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YVRN TD+DDKII RA E G ++ RY F +DM L+ LPP +EPR ++H+
Sbjct: 61 VTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120
Query: 195 IIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGR-KLEDNRAGERVAVDSRKKNPA 252
II+ I ++++ G+AY DGDVYF V KF +YG+LSGR LE+ +AG RV VD K+NP
Sbjct: 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPL 180
Query: 253 DFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312
DF LWK+AK GEP W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEI
Sbjct: 181 DFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240
Query: 313 AQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHY 371
AQS AA + YW+HNGF+ ID EKMSKSLGNF T+R +++ Y P LRLFL+ +HY
Sbjct: 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHY 300
Query: 372 RSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFL 431
RSP+++S LE A + + +Y L + A LK+ F F
Sbjct: 301 RSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELADLKE------------FEARFR 348
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMS 491
++ DD +T LA L + K IN LL K A+ ++ +L +LGL
Sbjct: 349 EALDDDFNTPKALAVLFELAKEINRLLEEGK--------SDAKAVLSALKALLAILGLK- 399
Query: 492 TGYSEVLLQLREKALKRADLTEDQ-VLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALM 550
+L L ++ + D ++D+ + IE+R ARK K + +D IR +L A+GI L
Sbjct: 400 ------VLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILE 453
Query: 551 DSPVGTTWR 559
D+P GTTWR
Sbjct: 454 DTPDGTTWR 462
|
Length = 464 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = 0.0
Identities = 232/485 (47%), Positives = 308/485 (63%), Gaps = 23/485 (4%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT++R++E +P V+GKV MYVCG T YD HIGHAR + FDVL RYLR+LGY+V
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKV 60
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YV+N TD+DDKII RA E GE +S R+ E + +DM L+ LPP +EPR ++H+ I
Sbjct: 61 QYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEI 120
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I+ I Q+++ G+AY D GDVYF V KF +YG+LS + L+ AG RV VD K+N DF
Sbjct: 121 IEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDF 180
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWKS+KEGEP W+SPWG GRPGWHIECSAM+ YLG DIHGGG+DL+FPHHENEIAQ
Sbjct: 181 VLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA YW+HNGF+ ID+EKMSKSLGNFFT+R V++ Y P LR FL+ HYRSP
Sbjct: 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSP 300
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+++S LE+A + +Y+ L + +L+ +L +F F+ +M
Sbjct: 301 LDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLNKFPDE------KEFEARFVEAM 354
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DDL+T LA L + K+IN L A+ +E L LE + L +L + +
Sbjct: 355 DDDLNTANALAVLFELAKSIN--LTFVSKADAALLIEHLIFLE----SRLGLLLGLPSKP 408
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ ++ IE+R++ARK K++ K+D IR +LA GI L D+P
Sbjct: 409 VQAGSNDDLGEIE----------ALIEERSIARKEKDFAKADEIRDELAKKGIVLEDTPQ 458
Query: 555 GTTWR 559
GTTWR
Sbjct: 459 GTTWR 463
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 460 bits (1186), Expect = e-161
Identities = 173/298 (58%), Positives = 214/298 (71%), Gaps = 1/298 (0%)
Query: 89 VKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI 148
P +GKV MYVCG T YD SHIGHAR V FDVL RYL+ LGY+V +V+NFTD+DDKI
Sbjct: 2 FVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKI 61
Query: 149 IARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFA 208
I RA + GE L+ R+ + +DM L+ LPP +EPRV++H+ II+ I +++ G+A
Sbjct: 62 IKRAQQQGESFRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYA 121
Query: 209 YRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFW 267
Y D GDVYF V FP+YG+LSG+ LE AG R V K++P DFALWK++KEGEP W
Sbjct: 122 YVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSW 181
Query: 268 ESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYW 327
+SPWG GRPGWHIECSAM+ YLG DIHGGG+DL FPHHENEIAQS AA + YW
Sbjct: 182 DSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYW 241
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
+HNG + I+ EKMSKSLGNF TIR V++ Y P LR FL+ HYRSP+++S LE A
Sbjct: 242 LHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQA 299
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 415 bits (1068), Expect = e-137
Identities = 216/499 (43%), Positives = 291/499 (58%), Gaps = 48/499 (9%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT++R++E P V MYVCG+T YD H+GHARV V FD++ R+LR GY + Y
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRN TD+DDKIIARA E GE L+ R+ + H+D L L P +EP+ ++++P +I
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 198 MITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
MI ++ NG AY +GDVY++V +F YGQLSG+ L+D RAGERV VD K++P DF L
Sbjct: 350 MIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVL 409
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK+AK GEP WESPWG GRPGWHIECSAMS G +FDIHGGG DL FPHHENEIAQS
Sbjct: 410 WKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSV 469
Query: 317 AACNN----------------SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPL 360
A + SH+ YW+HNGF+ +D EKMSKSLGNFFTIR+V++ Y P
Sbjct: 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPE 529
Query: 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTV 420
+R F++ HYRSP+NYS L+ A + +Y TL + A
Sbjct: 530 VVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-------------EFMLS 576
Query: 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTI 480
++N + F A+M+DD T +A L + +N + A L++L
Sbjct: 577 ENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVN----KTNDAQLAGCLKALGG----- 627
Query: 481 RNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRK 540
++GL+ +E L + L+ +++ I R AR +K + +SD IR
Sbjct: 628 -----IIGLLQRDPTEFL----QGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRD 678
Query: 541 DLAAVGIALMDSPVGTTWR 559
L I L D+ GTTWR
Sbjct: 679 LLNEHKIILEDNAGGTTWR 697
|
Length = 699 |
| >gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 394 bits (1013), Expect = e-130
Identities = 187/539 (34%), Positives = 270/539 (50%), Gaps = 55/539 (10%)
Query: 68 KPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRY 127
K T L + N+++ + P+ +V Y CG T YD SH+GHAR YVTFD++ R
Sbjct: 32 KEGKYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRI 91
Query: 128 LR-HLGYEVCYVRNFTDVDDKIIARANELGEDPIS-LSRRYCEEFHQDMVDLHCLPPSVE 185
L + GY+V YV N TD+DDKII RA E L+R++ +EF +DM L+ PP V
Sbjct: 92 LEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVI 151
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLE------DNRA- 238
RVS+++P I+D I +I+DNGFAY +G VYF V+ F + G + KLE ++R
Sbjct: 152 TRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP-KLEPESVADEDRIA 210
Query: 239 ---GERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295
G V K++P DFALWK++K GEP W+SPWG GRPGWHIECSAM++ LG D
Sbjct: 211 EGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPID 270
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSH--ISYWIHNGFVTIDSEKMSKSLGNFFTIRQV 353
IH GG+DL FPHH+NE+AQS A + H ++Y++H+G + I KMSKSL NF TIRQ
Sbjct: 271 IHSGGIDLKFPHHDNELAQS-EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQA 329
Query: 354 MELYHPLALRLFLIGTHYRSPINYSVVQLESASER---IFYIYQTLHDCEKALSLLDAAA 410
+ Y +RL + + P+NYS ++ A E+ F + + L +
Sbjct: 330 LSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVK------IKLRESE 383
Query: 411 LKDSIPPDT---------VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR 461
L + + H L D+ T L AL + N L
Sbjct: 384 LTSPQKWTQHDFELNELFEETKSAVHAALL----DNFDTPEALQALQKLISATNTYL--N 437
Query: 462 KGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIE 521
G++ + L A + + +L++ GL+ + L E + R E
Sbjct: 438 SGEQPSAPLLRSVA--QYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPLLEALLRFRDE 495
Query: 522 DRTVARKNKE-----------YEKSDAIRKD-LAAVGIALMDSPVGTT-WRPALPLALQ 567
R A+ + + D +R + L +GI + D P G + W+ LQ
Sbjct: 496 VRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQ 554
|
Length = 651 |
| >gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-121
Identities = 180/510 (35%), Positives = 263/510 (51%), Gaps = 50/510 (9%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT+ R++E +P G V +Y CG T Y+ +HIG+ R YV D L R L LGY V
Sbjct: 3 LRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRV 62
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
+V N TDV +DK++ A E G+ + ++ Y F +D L+ PS+
Sbjct: 63 THVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV 122
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVD 245
++H+ +I +I ++ G Y G+VYF + FP YG L+ +ED +AG R+ D
Sbjct: 123 CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHD 182
Query: 246 SRKKNPADFALW--KSAKEGEPF-WESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302
+ K+NP DF LW +S E W+SPWG G PGWHIECSAMS YLG DIH GG+D
Sbjct: 183 TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVD 242
Query: 303 LVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLA 361
+ HH NEIAQ AA + YW+H+ F+ ++ KMSKS G F T+ + E + PL
Sbjct: 243 HIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLD 302
Query: 362 LRLFLIGTHYRSPINYSVVQLESAS-------ERIFYIYQTLHDCEKAL--SLLDAAALK 412
R FL+G HYRS + +S L++A R+ + ++ +L + AA +
Sbjct: 303 YRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAER 362
Query: 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLES 472
+ + + DF A++ DD T L+ L +K ++ L
Sbjct: 363 VAESRASESE--LLLTDFRAALEDDFSTPKALSELQKLVK--------DTSVPPSLCLSV 412
Query: 473 LAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALK---RADLTEDQVLQRIEDRTVARKN 529
L A++ TVLGL L+Q +L A +E+++ Q IE R AR+
Sbjct: 413 LQAMD-------TVLGLG-------LIQEATASLSAQVPAGPSEEEIGQLIEARAHARQT 458
Query: 530 KEYEKSDAIRKDLAAVGIALMDSPVGTTWR 559
K++ +D IR L A GI L D+ +GT W+
Sbjct: 459 KDFPLADEIRDKLKAEGIELEDTHLGTIWK 488
|
Length = 490 |
| >gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 6e-99
Identities = 144/367 (39%), Positives = 198/367 (53%), Gaps = 37/367 (10%)
Query: 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154
G MYVCG+TPYD +H+GHA Y+ FD++ R R G++V YV+N TDVDD ++ RA
Sbjct: 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR 67
Query: 155 LGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG- 213
G D L+ R F +DM L LPP + +P +++++ ++L +G AY VD
Sbjct: 68 DGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDE 127
Query: 214 ---DVYFSVDKFPEYGQLSG------RKLEDNRAG--ERVAVDSRKKNPADFALWKSAKE 262
DVYFSVD P++G SG +L R G +R K++P D LW++A+
Sbjct: 128 EYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPG----KRDPLDALLWRAARP 183
Query: 263 GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNS 322
GEP W SP+GPGRPGWHIECSA++ LG FDI GGG DL+FPHHE A + AA
Sbjct: 184 GEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER 243
Query: 323 HIS-YWIHNGFVTIDSEKMSKSLGNF-FTIRQVMELYHPLALRLFLIGTHYRSPINYSVV 380
+ +++H G + +D EKMSKS GN F R P A+RL L+ HYR+ ++
Sbjct: 244 RFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDA 303
Query: 381 QLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440
L A R L A +L D + V A+++DDL T
Sbjct: 304 VLAEAEAR-------LARWRAAAALPAGPDAADVV--ARVR----------AALADDLDT 344
Query: 441 TVVLAAL 447
LAA+
Sbjct: 345 PGALAAV 351
|
Length = 384 |
| >gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 6e-97
Identities = 148/383 (38%), Positives = 207/383 (54%), Gaps = 31/383 (8%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L L++T + V+P E GMYVCG+TPYD +H+GHA Y+TFD++ R R G+
Sbjct: 17 PLRLFDTADGQVRPVEPGPE--AGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHR 74
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YV+N TDVDD + RA G D L + F +DM L LPP + +
Sbjct: 75 VHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDE 134
Query: 195 IIDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSG--RKLEDNRAGERVAVDSR- 247
+++M+ ++L +G AY V+G DVYFS+D ++G SG R ER R
Sbjct: 135 VVEMVEKLLASGAAYIVEGPEYPDVYFSIDATEQFGYESGYDRATMLELFAERGGDPDRP 194
Query: 248 -KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306
K++P D LW++A+EGEP W+SP+G GRPGWHIECSA++ LG FDI GGG DL+FP
Sbjct: 195 GKRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDLIFP 254
Query: 307 HHENEIAQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNF-FTIRQVMELYHPLALRL 364
HHE A + AA ++ +++H G + +D EKMSKSLGN F + P A+RL
Sbjct: 255 HHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRL 314
Query: 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSIN 424
L+ HYR +++ L A R+ A AL D+ PD I
Sbjct: 315 GLLAGHYRQDRDWTDAVLAEAEARL-------------ARWRAALALPDA--PDATDLIA 359
Query: 425 KFHNDFLASMSDDLHTTVVLAAL 447
+ +++DL T LAA+
Sbjct: 360 RLR----QHLANDLDTPAALAAV 378
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 411 |
| >gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 4e-77
Identities = 157/502 (31%), Positives = 253/502 (50%), Gaps = 49/502 (9%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT ++ +K + KV Y CG T Y+ +HIG+ R Y+ D+L + LR L Y V
Sbjct: 3 LKLYNTKTKDLSELKNFSDVKV--YACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNV 60
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
Y N TD+ +DK++ A E G +SR + E F D L+ + P
Sbjct: 61 NYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKV 120
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNR--AGERVA 243
S+++P +I+++ + +NGF Y V+G+VYF F YGQ++G L D + + RV
Sbjct: 121 LVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVE 180
Query: 244 VDSRKKNPADFALW---KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGG 300
+D K+N +DF LW K+ E W+SPWG G P WH+EC+AM+ Y + DIH GG
Sbjct: 181 IDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGG 240
Query: 301 MDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHP 359
+D + HH NEIA + N ++H F+ ++ EKMSKS NF TI+ + + + P
Sbjct: 241 VDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSP 300
Query: 360 LALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDT 419
L R F + HYR+ + ++ L++ + L +L D L +
Sbjct: 301 LDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIE 360
Query: 420 VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT 479
+ ++++ FL ++ DL+ LA L D +K ++L+ L K
Sbjct: 361 FSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKD-----------------DNLSFLSKL 403
Query: 480 IRNVLTVLGLMSTGYSEVL-LQLREKALK---RADLTEDQVLQR-IEDRTVARKNKEYEK 534
++ + EVL L LRE+ L+ + D ++ IE+R +A+ K++++
Sbjct: 404 ---------RLAFKFDEVLSLGLREEILREIENHRIVIDDNMKSLIEERRLAKCEKDFKR 454
Query: 535 SDAIRKDLAAVGIALMDSPVGT 556
+D IR+ A+ G L+D+ GT
Sbjct: 455 ADEIREYFASKGFVLIDTEEGT 476
|
Length = 481 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-58
Identities = 64/101 (63%), Positives = 78/101 (77%)
Query: 278 WHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDS 337
WHIECSAM+ YLG +FDIHGGG+DL+FPHHENEIAQS AA YW+H G +TID
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378
EKMSKSLGNF T+R ++ Y P LRL L+ +HYRSP+++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 3e-53
Identities = 68/133 (51%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 77 WLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVC 136
LYNT++R++E P G V MYVCG T YD +HIGHAR YV FDVL RYL LGY+V
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVR 60
Query: 137 YVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHII 196
YV+N TD+DDKII RA E G ++ Y +EF +DM L+ LPP V PRV HI
Sbjct: 61 YVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRVW----HIE 116
Query: 197 D--MITQILDNGF 207
M + L F
Sbjct: 117 CSAMAMKYLGETF 129
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-24
Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 410 ALKDSIPPDTVTSI--NKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQA 467
AL+ +PP TV F F+A+M DD +T LA L + + IN R K+
Sbjct: 17 ALRG-VPPTTVDIDWGEPFAERFIAAMDDDFNTPEALAVLFELAREIN-----RLKKEDI 70
Query: 468 MRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVAR 527
+ +LAAL K + VL GL+ E LQ L+ ++ I R AR
Sbjct: 71 EKAAALAALLKALGGVL---GLLQQD-PEAFLQ---GGTGEGGLSVAEIEALIAQRNQAR 123
Query: 528 KNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 559
K K++ ++D IR +LAA GI L DSP GTTWR
Sbjct: 124 KAKDWAEADRIRDELAAQGIILEDSPEGTTWR 155
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. Length = 156 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGED 158
G+TP HIGH R VTFD L + R LGY+V + D I AN+ GE+
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGEN 60
Query: 159 PISLSRRYCEEFHQD--------MVDLHCL--PPSVEPRVSDHMPHI---IDMITQILDN 205
+ R+ E +D L + SD + HI ++++ +
Sbjct: 61 AKAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKA--G 118
Query: 206 GFAYR 210
G A
Sbjct: 119 GPARP 123
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 62/299 (20%), Positives = 98/299 (32%), Gaps = 55/299 (18%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTD--------------VDDKIIARANELG 156
H+GHA ++ D + RY R GYEV ++ D K E
Sbjct: 16 HLGHALTHIIADFIARYKRMRGYEVPFLPG-WDTHGLPIELKAERKGGRKKKTIWIEEFR 74
Query: 157 EDPISLSRRYCEEFHQDM------VDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYR 210
EDP E +D D + EP + + + +++ + G YR
Sbjct: 75 EDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPE---YSKAVELIFSRLYEKGLIYR 131
Query: 211 VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKK------NPADFALWKSAKEGE 264
V + F + + + L+ R G+ V + + + D+A+ +
Sbjct: 132 GTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQR---- 187
Query: 265 PFWESPWGPGRPGWHIE----CSAMSAAYLGHSF-----------DIHGGGMDLVFPHHE 309
WG P + LG+ D H G D++
Sbjct: 188 -----YWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWAN 242
Query: 310 NEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
I A + +GFV +KMSKS GN V+E Y ALR +L
Sbjct: 243 FWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLT 301
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
H+GH Y+ DV RYLR GYEV ++ T D+ KI +A + G P L +
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVFFL---TGTDEHGTKIELKAEKEGITPQELVDKNH 77
Query: 168 EEFHQDMVDLHC 179
EEF + L+
Sbjct: 78 EEFKELFKALNI 89
|
Length = 558 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPIS 161
P HIGHA + DVL R+ R GY+V ++ T D+ KI +A E G P
Sbjct: 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFL---TGTDEHGQKIQRKAEEAGISPQE 67
Query: 162 LSRRYCEEFHQDMVDLHC 179
L+ R F + L+
Sbjct: 68 LADRNSAAFKRLWEALNI 85
|
Length = 511 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
NGFV ++ +KMSKS GN +R+ +E Y +RL+L +
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607
|
Length = 897 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 277 GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI- 335
+ +A DIH GG D + H E + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKA-GGPARPFGLTFGRVMGA 134
Query: 336 DSEKMSKSL 344
D KMSKS
Sbjct: 135 DGTKMSKSK 143
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH Y+ D+ RY R G+EV +V DD I+ +A + G P L RY
Sbjct: 18 HLGHLVEYIQADIWVRYQRMRGHEVLFVCA----DDAHGTPIMLKAEKEGITPEELIARY 73
Query: 167 CEEFHQDMVDLH 178
E +D
Sbjct: 74 HAEHKRDFAGFG 85
|
Length = 673 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
H+GH V DV RY R GY+V +V T D+ KI +A E G P L +Y
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVLFV---TGTDEHGTKIEQKAEEEGVTPQELCDKYH 72
Query: 168 EEF 170
E F
Sbjct: 73 EIF 75
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
HIGH + DV RYLR GY+V +V T D+ KI A + G P +
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVLFV---TGTDEHGTKIELAAEKEGVTP----QELV 67
Query: 168 EEFHQ 172
+ +H+
Sbjct: 68 DRYHE 72
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELG 156
Y G H+GHA + DV RY R GYEV +V D+ KI +A + G
Sbjct: 9 YANGKP-----HLGHAYTTILADVYARYKRLRGYEVLFV---CGTDEHGTKIELKAEQEG 60
Query: 157 EDPISLSRRYCEEFHQD 173
P L +Y EEF D
Sbjct: 61 LTPKELVDKYHEEFKDD 77
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+GF+T++ +KMSKS GN +++E Y ALR +L
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLA 361
|
Length = 558 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
NG + ++SEKMSKS GNF T+RQ +E + A R L
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFAL 745
|
Length = 1084 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
I G V ++ EKMSKS GN T + ++ Y A RL+++
Sbjct: 264 IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYIL 303
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G++T++ KMSKS GN ++++ Y ALR +L
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLA 352
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 332 FVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
EK+SKS GN TI +E P +LRLF+
Sbjct: 272 LFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMF 308
|
Length = 510 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 333 VTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYI 392
V + EKMSKS GN ++++E Y ALRLF++ + PI S+ ES E
Sbjct: 599 VYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIM---FMGPIAASLEWNESGLEGARRF 655
Query: 393 YQTLHDCEKALSLLDAAALKDSIPPDTV--TSINKFHNDFLASMSDDLHTTVVL-AALSD 449
+ + ++ AA + H FL +++DL A+S
Sbjct: 656 LDRVWNLVYEITGELDAASLTVTALEEAQKELRRDVH-KFLKKVTEDLEKRESFNTAISA 714
Query: 450 PLKTINDLLHTRKGKKQAMRLESLAAL 476
++ +N L K KK+A+ LE L
Sbjct: 715 MMELLNKLY---KAKKEALMLEYLKGF 738
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
H+GH R Y DV+ RY R GY V +
Sbjct: 2 HVGHGRTYTIGDVIARYKRMRGYNVLF 28
|
Length = 897 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G++T++ +KMSKS GN ++E Y ALR +L+
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLL 308
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESASER 388
NG+V ++ +KMSKS GN T+ Q +E + RL++ ++ ++E R
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILR 670
Query: 389 IFYIYQ 394
+ +Y+
Sbjct: 671 LERLYE 676
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GH R Y D++ RY R GY V + F A ++G DP + ++
Sbjct: 16 HVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKM 75
Query: 171 HQDM 174
+ +
Sbjct: 76 KEQL 79
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 312 IAQSCAACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
I A ++ + +G V D + KMSKSLGN V++ Y ALRL+L +
Sbjct: 539 IVLGTALTGSAPYKNVLVHGLVR-DEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASS 597
Query: 370 HYRSPINYS 378
Y IN+S
Sbjct: 598 DYGRDINFS 606
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|214848 smart00840, DALR_2, This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLG 488
F +M DD +T LA L + + IN L E LAAL +R + VLG
Sbjct: 1 RFEEAMDDDFNTPEALAVLFELAREINRLALKATDA------EELAALAALLRALGGVLG 54
Query: 489 LM 490
L+
Sbjct: 55 LL 56
|
Length = 56 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV 135
H+GH R Y DV+ RY R GY V
Sbjct: 50 HVGHVRNYTIGDVIARYKRMQGYNV 74
|
Length = 814 |
| >gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
KMS S GN TI +E P +LR +
Sbjct: 278 GKMSSSKGNVITIEDWLEYAPPESLRFLMFRV 309
|
This family includes only lysyl tRNA synthetases from prokaryotes. Length = 357 |
| >gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 332 FVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
++ + KMS S GN ++ +E+ P LR +
Sbjct: 269 WILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIA 305
|
Length = 521 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+ ++T++ K SKS G + +E Y P LR +L
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLA 362
|
Length = 556 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
+GF+T++ KMSKS G F R ++ P LR +L
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYL 356
|
Length = 673 |
| >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
KMS S GN T +E+ P LR
Sbjct: 274 GKMSSSKGNVITPSDWLEVAPPEVLRYLYA 303
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 100.0 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 100.0 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 99.98 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.98 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.97 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.97 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 99.97 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.96 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.96 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.95 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.93 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.92 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.92 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.92 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.91 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.88 | |
| cd07963 | 156 | Anticodon_Ia_Cys Anticodon-binding domain of cyste | 99.85 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.78 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 99.68 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 99.64 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.49 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 99.46 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 99.38 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 99.37 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.37 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 99.36 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 99.36 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 99.35 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 99.32 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 99.32 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 99.32 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 99.3 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 99.29 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 99.28 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 99.25 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 99.25 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 99.21 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 99.18 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 99.17 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 99.16 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 99.12 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 99.12 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 98.97 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 98.71 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 98.59 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 98.59 | |
| PF09190 | 63 | DALR_2: DALR domain; InterPro: IPR015273 The amino | 98.55 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 98.51 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 98.42 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 98.4 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 98.39 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 98.34 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA | 98.06 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 98.02 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.96 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 97.84 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 97.76 | |
| cd07955 | 81 | Anticodon_Ia_Cys_like Anticodon-binding domain of | 97.74 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.73 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 97.71 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 97.71 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 97.71 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 97.69 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 97.68 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 97.66 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 97.61 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 97.53 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 97.48 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 97.42 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 97.41 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 97.32 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 97.29 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 97.28 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 97.16 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 97.06 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 97.02 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 96.83 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 96.72 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 96.69 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 96.63 | |
| smart00836 | 122 | DALR_1 DALR anticodon binding domain. This all alp | 96.54 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 96.45 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 89.61 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 88.7 |
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-133 Score=1084.93 Aligned_cols=555 Identities=81% Similarity=1.271 Sum_probs=478.8
Q ss_pred hhhhhhcCCCccccccCCcC-Ccc-cccCCCCCCCCCCccccccccCCCCCccccccCCCCCCCCCCCCCCcceeeeecc
Q 008191 5 ILTLKCYKPLASIKFSPFIN-SFH-TLQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTM 82 (574)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ntl 82 (574)
++++++|+||+|++||+.++ .++ ..+++|+.. .+.+-+.|+..++ ++++ .|.+..++|+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~------~~~~~~~~l~lyNTl 66 (557)
T PLN02946 1 LNLAKSCRPLTPLRLSSPPRSQLRIAFPLRPPKE-RQYRSCFFSASAL-------ASNG------APASRGRELHLYNTM 66 (557)
T ss_pred CchhhccCCcceeecCCchHHHHhhhcccCCCcc-cccccccchhhhh-------ccCC------CcCCCCCceEEEECC
Confidence 35789999999999999988 444 567777664 1344333332222 2445 788888999999999
Q ss_pred CCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHH
Q 008191 83 SRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISL 162 (574)
Q Consensus 83 ~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~ 162 (574)
||+||+|.|.++++|+||+|||||||++||||+|++|.+|+|+|||++.||+|.||+|+|||||||+.+|+++|++|+++
T Consensus 67 tr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~el 146 (557)
T PLN02946 67 SRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISL 146 (557)
T ss_pred CCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCcc
Q 008191 163 SRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERV 242 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v 242 (574)
+++|+++|+++|++|||.+++++||+|+|++.|+++|++|++||+||+++++||||++++++||+||+++++++..|++|
T Consensus 147 a~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv 226 (557)
T PLN02946 147 SRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERV 226 (557)
T ss_pred HHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCC
Q 008191 243 AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNS 322 (574)
Q Consensus 243 ~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~ 322 (574)
+.+..|+||.||+|||.+++|+|.|++|||.||||||||||+|+.+|||.++|||+||+||+||||+||+||++|+.+++
T Consensus 227 ~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~ 306 (557)
T PLN02946 227 AVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDS 306 (557)
T ss_pred CcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCC
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 323 HISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 323 ~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
+++||||+|||+++|+|||||+||+|+++|++++|+++++|||+|++||+++++|+++.+.++.+.+.++++++.++...
T Consensus 307 ~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~ 386 (557)
T PLN02946 307 NISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEES 386 (557)
T ss_pred CCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHH
Q 008191 403 LSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRN 482 (574)
Q Consensus 403 l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~ 482 (574)
+............+..+...+..+.+.|.+||+|||||+.|++.|+++++.+|++++.........+...+..+...+..
T Consensus 387 l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~~~~~~~~~~~~l~~~~~~~~~ 466 (557)
T PLN02946 387 LQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRD 466 (557)
T ss_pred hhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHH
Confidence 53211000000112223445667889999999999999999999999999999998653110011122334556667888
Q ss_pred HHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCCCeEEEECC
Q 008191 483 VLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPAL 562 (574)
Q Consensus 483 ~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~Gt~W~~~~ 562 (574)
++.+|||.+...++..++.........++.+++|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++..
T Consensus 467 ~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~~Gt~w~~~~ 546 (557)
T PLN02946 467 VLSVLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAI 546 (557)
T ss_pred HHHHcCCCchhhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECCCCceEEEcC
Confidence 88999996532111111111111111223356799999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcC
Q 008191 563 PLALQEQAVAT 573 (574)
Q Consensus 563 ~~~~~~~~~~~ 573 (574)
|+.+|++|+++
T Consensus 547 ~~~~~~~~~~~ 557 (557)
T PLN02946 547 PLALQEQVAAT 557 (557)
T ss_pred CCccccccccC
Confidence 99999999875
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-130 Score=1021.16 Aligned_cols=456 Identities=51% Similarity=0.895 Sum_probs=411.8
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~ 154 (574)
.|+|||||||+||+|.|.++++|+||+||||||+.+||||+|++|.+|+++|+|+++||+|.||+|+||+|||||++|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCc-c
Q 008191 155 LGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGR-K 232 (574)
Q Consensus 155 ~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~-~ 232 (574)
.|.++.+++++|+++|++||++|||.+|+.+||+|+||++|+++|++|++||+||+. +|+|||++.++++||+||++ .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999988999999999999999999999999999998 78999999999999999976 8
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
++++..|.++..+..|+||.||+|||.+++|+|+|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 008191 313 AQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFY 391 (574)
Q Consensus 313 A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~ 391 (574)
||++|+++ ++|++||||+|||+++|+|||||+||||+++|++++|+|++||||||++|||+|++||++.|+++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Q 008191 392 IYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLE 471 (574)
Q Consensus 392 l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~ 471 (574)
|++++.++....... .. ....++...|.+||+|||||+.|++.|+++++.+|...+.....
T Consensus 321 l~~~~~~~~~~~~~~---------~~---~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~------- 381 (464)
T COG0215 321 LYNALRRLRDLAGDA---------EL---ADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSD------- 381 (464)
T ss_pred HHHHHHHHHhhcccc---------cc---chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhccccc-------
Confidence 999988765322110 00 03456777899999999999999999999999998776543210
Q ss_pred HHHHHHHHHHHHHhh-----hccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCC
Q 008191 472 SLAALEKTIRNVLTV-----LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546 (574)
Q Consensus 472 ~l~~~~~~l~~~l~i-----LGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~G 546 (574)
...++..+..++.+ ||+.+... . ...+..+++|+.||++|++||++|||++||+|||+|.++|
T Consensus 382 -~~~~~~~~~~~~~~lg~~~l~~~~~~~----~-------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~G 449 (464)
T COG0215 382 -AKAVLSALKALLAILGLKVLGLFPQSG----A-------QEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALG 449 (464)
T ss_pred -hHHHHHHHHHHHHHhCchhhccccccc----c-------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCC
Confidence 11223333344444 44544221 0 0112257889999999999999999999999999999999
Q ss_pred cEEEeCCCCeEEEEC
Q 008191 547 IALMDSPVGTTWRPA 561 (574)
Q Consensus 547 I~leDt~~Gt~W~~~ 561 (574)
|.|+|||+||+|++.
T Consensus 450 i~leD~~~gt~w~~~ 464 (464)
T COG0215 450 IILEDTPDGTTWRRK 464 (464)
T ss_pred cEEEECCCCeEEEeC
Confidence 999999999999973
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-120 Score=984.67 Aligned_cols=459 Identities=47% Similarity=0.830 Sum_probs=412.6
Q ss_pred CCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHH
Q 008191 72 ASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIAR 151 (574)
Q Consensus 72 ~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~ 151 (574)
..++|+|||||||+||+|.|.++++|+||+||||||+++||||+|++|.+|+++|||++.||+|.||+|+|||||||+.+
T Consensus 224 ~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~ 303 (699)
T PRK14535 224 HNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIAR 303 (699)
T ss_pred ccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccC
Q 008191 152 ANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSG 230 (574)
Q Consensus 152 A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~ 230 (574)
|+++|++|++++++|+++|.++|++|||.+++++||+|+|++.|+++|++|+++|+||++ .|+||||+++++.||+||+
T Consensus 304 A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~ 383 (699)
T PRK14535 304 AAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSG 383 (699)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999987 6799999999999999999
Q ss_pred cccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchH
Q 008191 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN 310 (574)
Q Consensus 231 ~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~ 310 (574)
++++++..|++|+.+.+|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++|||+||.||+||||+|
T Consensus 384 ~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN 463 (699)
T PRK14535 384 KSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHEN 463 (699)
T ss_pred CChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCcc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCC----------------CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCC
Q 008191 311 EIAQSCAACNN----------------SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374 (574)
Q Consensus 311 ~~A~~~a~~~~----------------~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~ 374 (574)
|+||++|+.++ +|++||||+|||+++|+|||||+||+|+++|++++|++|++|||++++||+++
T Consensus 464 EiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRsp 543 (699)
T PRK14535 464 EIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSP 543 (699)
T ss_pred HHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 99999998765 48999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 008191 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI 454 (574)
Q Consensus 375 ~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~ 454 (574)
++||++.|+++.+.+.++++++.++... . ..+...+..+.+.|.+||+||||||.|++.|+++++.+
T Consensus 544 L~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~i 610 (699)
T PRK14535 544 LNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEV 610 (699)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 9999999999999999998887654210 0 01122345678899999999999999999999999999
Q ss_pred HHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHH
Q 008191 455 NDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEK 534 (574)
Q Consensus 455 N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~ 534 (574)
|+... ..+...+..++.+|||......+.... . ....++.+++|+.||++|++||++|||++
T Consensus 611 N~~~~--------------~~~~~~l~~~~~vLGl~~~~~~~~~~~---~-~~~~~~~~~~i~~Li~~R~~AR~~Kdfa~ 672 (699)
T PRK14535 611 NKTND--------------AQLAGCLKALGGIIGLLQRDPTEFLQG---G-AASDGLSNEEIEDLIARRKQARADKNWAE 672 (699)
T ss_pred HHHHH--------------HHHHHHHHHHHhhcCCCccchhhhhhc---c-cccccCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 98631 112344556778899853221111110 0 00112235679999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 535 SDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 535 AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
||+|||+|.++||.|+||++||+|++.
T Consensus 673 AD~IRd~L~~~GI~veDt~~Gt~W~~~ 699 (699)
T PRK14535 673 SDRIRDLLNEHKIILEDNAGGTTWRRG 699 (699)
T ss_pred HHHHHHHHHHCCCEEEEcCCCceEeeC
Confidence 999999999999999999999999863
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-118 Score=954.68 Aligned_cols=467 Identities=37% Similarity=0.633 Sum_probs=411.9
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc----------
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV---------- 144 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~---------- 144 (574)
.|+|||||||+||+|.|.++++|+||+||||||+++||||+|++|.+|+++|||++.||+|.||+|+||+
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC
Q 008191 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE 224 (574)
Q Consensus 145 g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~ 224 (574)
|+||+.+|+++|++|++++++|+++|+++|++|||.+++++||+|+|++.|+++|++|+++|+||+++++||||+.+|+.
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccCCCccccCCCccCccchhhccccc--CC-CCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 225 YGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK--EG-EPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 225 yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~--~g-~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
||+||+++++++..|.+++.+..|+||.||+|||..+ ++ +|+|++|||.||||||||||+|+.+|||.++|||+||+
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999998999888888899999999999864 33 58999999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHH
Q 008191 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
||+||||+||+||++|+++++|++||||+|||+++|+|||||+||+|+++|+++. |+++++|||+|++||+++++||++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhc---C-C-CCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDA--AAL---K-D-SIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKT 453 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~--~~~---~-~-~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~ 453 (574)
.|.++.+.+.+|++++..+......... ... . . .....+...+..+.+.|.+||+||||||.|++.|+++++.
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~ 401 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKD 401 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999999999998877543211000 000 0 0 0001122345678899999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhcccccc-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcH
Q 008191 454 INDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTG-YSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEY 532 (574)
Q Consensus 454 ~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~-~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf 532 (574)
+|.-. ..+...+..++.+|||.... ..+. +.. .......+++|+.||++|++||++|||
T Consensus 402 ~n~~~---------------~~~~~~~~~~~~vLGl~~~~~~~~~---~~~--~~~~~~~~~~i~~li~~R~~aR~~kdf 461 (490)
T PRK14536 402 TSVPP---------------SLCLSVLQAMDTVLGLGLIQEATAS---LSA--QVPAGPSEEEIGQLIEARAHARQTKDF 461 (490)
T ss_pred hhhhH---------------HHHHHHHHHHHhhcCcccccchhhh---hhh--cccccCCHHHHHHHHHHHHHHHHhCCH
Confidence 98510 12445666778899985211 0111 100 001112245799999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 533 EKSDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 533 ~~AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
++||+||++|.++||.|+|||+||+|++.
T Consensus 462 ~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~~ 490 (490)
T PRK14536 462 PLADEIRDKLKAEGIELEDTHLGTIWKRV 490 (490)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEeC
Confidence 99999999999999999999999999863
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-115 Score=933.66 Aligned_cols=464 Identities=33% Similarity=0.564 Sum_probs=405.1
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc----------
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV---------- 144 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~---------- 144 (574)
.|+||||+||+||+|+|. ++|+||+||||||+++||||+|++|.+|+++|||+++||+|.||+|+||+
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 599999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC
Q 008191 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE 224 (574)
Q Consensus 145 g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~ 224 (574)
||||+.+|+++|++|++++++|.+.|+++|++|||.+++++|++|+|++.|+++|++|++||+||+++++||||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccc--CCCccccCCCccCccchhhcccc---cCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeec
Q 008191 225 YGQLSGRKLEDNR--AGERVAVDSRKKNPADFALWKSA---KEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGG 299 (574)
Q Consensus 225 yg~Ls~~~~~~~~--~g~~v~~~~~k~~~~Df~lwk~~---~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~ 299 (574)
||+||+++++++. .|.+++++..|+||.||+|||.. ++++|+|++|||.||||||||||+|+.++||.++|||+|
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999999876 78888888889999999999975 788999999999999999999999999999999999999
Q ss_pred cccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCC
Q 008191 300 GMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYS 378 (574)
Q Consensus 300 G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs 378 (574)
|+||+||||+||+||++|+.+.++++||||+|||+++|+|||||+||+|+++|++++ |+++++|||++++||++|++||
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 008191 379 VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLL 458 (574)
Q Consensus 379 ~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~ 458 (574)
++.|+++.+.+.++++++..+...+............+........++.+.|.+||+||||||.|++.|+++++.+|...
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~~ 399 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLSF 399 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876644332110000000000000112345678999999999999999999999999999741
Q ss_pred HhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHH
Q 008191 459 HTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAI 538 (574)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~I 538 (574)
.. .. . +...+..++. ||+.... ...+. . .....+++|+.||++|++||++|||++||+|
T Consensus 400 --~~------~~---~-~~~~~~~~~~-lg~~~~~----~~~~~---~-~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~i 458 (481)
T PRK14534 400 --LS------KL---R-LAFKFDEVLS-LGLREEI----LREIE---N-HRIVIDDNMKSLIEERRLAKCEKDFKRADEI 458 (481)
T ss_pred --hh------HH---H-HHHHHHHHHh-CCCCccc----chhhc---c-ccccCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 00 01 1 2234555555 7874211 11110 0 0112356799999999999999999999999
Q ss_pred HHHhHhCCcEEEeCCCCeEEEEC
Q 008191 539 RKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 539 Rd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
|++|.++||.|+|||+||+|++.
T Consensus 459 R~~L~~~Gi~l~Dt~~Gt~w~~~ 481 (481)
T PRK14534 459 REYFASKGFVLIDTEEGTKVKRG 481 (481)
T ss_pred HHHHHHCCCEEEEcCCCCEEEeC
Confidence 99999999999999999999863
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-114 Score=934.29 Aligned_cols=463 Identities=53% Similarity=0.926 Sum_probs=424.9
Q ss_pred cceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH
Q 008191 74 TQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN 153 (574)
Q Consensus 74 ~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~ 153 (574)
+.|+||||+||++|+|.|..+++|+||+|||||||++||||+|+||.+|+++||||+.||+|.|++|+||+|+||+.+|+
T Consensus 1 ~~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~ 80 (463)
T PRK00260 1 MMLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN 80 (463)
T ss_pred CceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCccc
Q 008191 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKL 233 (574)
Q Consensus 154 ~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~ 233 (574)
++|++|++++++|+++|.++|++|||..+|+++|+|+|++.+++++++|+++|+||+++++||||++++++||+||++++
T Consensus 81 ~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~ 160 (463)
T PRK00260 81 EEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNL 160 (463)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCH
Confidence 99999999999999999999999999778999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHH
Q 008191 234 EDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 234 ~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A 313 (574)
+++..|.+++.+.+|+||.||+|||.+++|++.|++|||.||||||||||+|+.+++|.++|||+||+||+||||+|++|
T Consensus 161 ~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neia 240 (463)
T PRK00260 161 DELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIA 240 (463)
T ss_pred HHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHH
Confidence 99888999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 008191 314 QSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIY 393 (574)
Q Consensus 314 ~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~ 393 (574)
|++|+.+++|+++|+|+|||.++|+|||||+||+|++.|++++|++|++|||+++++|+++++|+++.+.++.+.+.+++
T Consensus 241 qs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~ 320 (463)
T PRK00260 241 QSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLY 320 (463)
T ss_pred HHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Q 008191 394 QTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESL 473 (574)
Q Consensus 394 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l 473 (574)
+++..+.. ...+.++...+..+.+.|.+||+||||++.|++.|+++++.+|++++... ...+
T Consensus 321 ~~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~~-------~~~~ 382 (463)
T PRK00260 321 NALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETKD-------KEAA 382 (463)
T ss_pred HHHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccc-------HHHH
Confidence 98876531 12335667778889999999998899999999999999999999986531 2234
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCC
Q 008191 474 AALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~ 553 (574)
..+...+..++.+|||....... . ........+++|+.|+++|++||++|||++||+|||+|.++||.|+|++
T Consensus 383 ~~~~~~~~~~~~ilG~~~~~~~~-~------~~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~ 455 (463)
T PRK00260 383 AALAALLRALADVLGLEQDEEAL-F------EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTP 455 (463)
T ss_pred HHHHHHHHHHHHhcCCCchhhhh-h------hcccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcC
Confidence 55667788889999995321110 0 0001123466799999999999999999999999999999999999999
Q ss_pred CCeEEEEC
Q 008191 554 VGTTWRPA 561 (574)
Q Consensus 554 ~Gt~W~~~ 561 (574)
+||+|++.
T Consensus 456 ~G~~w~~~ 463 (463)
T PRK00260 456 DGTTWRRK 463 (463)
T ss_pred CCceEEeC
Confidence 99999863
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-113 Score=955.15 Aligned_cols=489 Identities=36% Similarity=0.610 Sum_probs=429.5
Q ss_pred CcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHH-HcCCeeEEEcCCccccHHHHHH
Q 008191 73 STQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR-HLGYEVCYVRNFTDVDDKIIAR 151 (574)
Q Consensus 73 ~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~dD~g~kI~~~ 151 (574)
.++|+|||||||+||+|.|.++++|+||+||||||+.+||||||+||.+|+|+|||+ ++||+|.||+|+||||||||.+
T Consensus 37 ~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 37 LTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC----Ccc
Q 008191 152 ANELGED-PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP----EYG 226 (574)
Q Consensus 152 A~~~g~~-~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~----~yg 226 (574)
|+++|++ +.++|++|+++|.++|++|||.+|++++|+|+|+++|+++|++|+++|+||+++|+|||++++++ .||
T Consensus 117 A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg 196 (651)
T PTZ00399 117 AREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP 196 (651)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred cccC---cccccccCCCc-c-ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 227 QLSG---RKLEDNRAGER-V-AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 227 ~Ls~---~~~~~~~~g~~-v-~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+|++ .+.+.+..|++ + +.+..|++|.||+|||..++|+|.|+||||.|||||||||++|+..+||.++|||+||+
T Consensus 197 ~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~ 276 (651)
T PTZ00399 197 KLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGI 276 (651)
T ss_pred hhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCC
Confidence 9984 44555566775 5 34457999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHH
Q 008191 302 DLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
||+||||+||+||++|++++ +|++||+|+|||+++|+|||||+||||+|+|+|+.||+|++|||||+.+|+++++||++
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e 356 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDE 356 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHH
Confidence 99999999999999999987 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDA--AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLL 458 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~ 458 (574)
.+.++.+...++++.+.++...+..... .....+.+.+++..+.++.+.|.++|+|||+++.|+++|++|++.+|+|+
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi 436 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYL 436 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887777554432110 00112345677888899999999999899999999999999999999999
Q ss_pred HhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhh----h-----
Q 008191 459 HTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARK----N----- 529 (574)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~----~----- 529 (574)
+.. ...+..++..+..+|..++.+|||.+....-.++. ... ........|+.|++.|+++|+ +
T Consensus 437 ~~~----~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~--~~~--~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~ 508 (651)
T PTZ00399 437 NSG----EQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQG--QNS--TSENFKPLLEALLRFRDEVRDAAKAEMKLIS 508 (651)
T ss_pred hcc----ccchHHHHHHHHHHHHHHHhcccCCcchhhccccc--ccc--chhhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 631 12345567778889999999999964221000000 000 001123558899999999994 4
Q ss_pred ------hcHHHHHHHHH-HhHhCCcEEEeCCCC-eEEEECCchhhhhh
Q 008191 530 ------KEYEKSDAIRK-DLAAVGIALMDSPVG-TTWRPALPLALQEQ 569 (574)
Q Consensus 530 ------Kdf~~AD~IRd-~L~~~GI~leDt~~G-t~W~~~~~~~~~~~ 569 (574)
|+|++||+||| +|.++||.|+|+++| |+|++.++.+++..
T Consensus 509 ~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~ 556 (651)
T PTZ00399 509 LDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQRE 556 (651)
T ss_pred chhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHH
Confidence 88999999999 599999999999999 79999998876543
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-113 Score=881.50 Aligned_cols=506 Identities=45% Similarity=0.750 Sum_probs=432.5
Q ss_pred CCCCCCC-CCCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHH-HcCCeeEEEcC
Q 008191 63 TDGDDKP-ASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR-HLGYEVCYVRN 140 (574)
Q Consensus 63 ~~~~~~~-~~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~ 140 (574)
.+-.+.| .+.+++|+|||||||+||+|.|.++++|+||+||||||+..||||||+||.+|+|+|+|+ +.||+|.||+|
T Consensus 21 q~~w~~p~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmN 100 (586)
T KOG2007|consen 21 QPHWDQPNAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMN 100 (586)
T ss_pred CcccCCCCCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEec
Confidence 3444566 788889999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CccccHHHHHHHH--HcCCCh---HHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCce
Q 008191 141 FTDVDDKIIARAN--ELGEDP---ISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDV 215 (574)
Q Consensus 141 ~dD~g~kI~~~A~--~~g~~~---~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v 215 (574)
|||+|||||.+|+ +.++.| .+.-..|+++|.+||.+|||.+||+.+|+|+|+++|+.+|++|+++|++|..+|+|
T Consensus 101 iTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsV 180 (586)
T KOG2007|consen 101 ITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSV 180 (586)
T ss_pred ccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcE
Confidence 9999999999997 234444 44433688999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC-CcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 216 YFSVDKFP-EYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 216 ~f~~~~~~-~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
|||+.+++ .||+|+|+. +.+..|+.+..+..|++|.||+|||.+|+|||+|++|||.||||||||||+|+..+||..+
T Consensus 181 YFdv~kf~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~l 259 (586)
T KOG2007|consen 181 YFDVDKFPHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQL 259 (586)
T ss_pred EEecccccchhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhcccc
Confidence 99999999 599999765 6777888887778899999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
|||+||+|+.||||+||+||++|++.. +|++||+|+|||+++|+|||||++||||++|+|+.|+|++||++||..+|++
T Consensus 260 DIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~ 339 (586)
T KOG2007|consen 260 DIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRS 339 (586)
T ss_pred ceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999865 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 008191 374 PINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKT 453 (574)
Q Consensus 374 ~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~ 453 (574)
+++|+...|..+.+....+.+++..+................+.++.+.+.....+|+.|++|+|+|+.++..+.+++..
T Consensus 340 ~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~ 419 (586)
T KOG2007|consen 340 PLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQ 419 (586)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 99999999988877555444444444333332211123445567788888999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccc-cHH--------HHH---HHH----HHHH------------
Q 008191 454 INDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMST-GYS--------EVL---LQL----REKA------------ 505 (574)
Q Consensus 454 ~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~-~~~--------~i~---~~l----~~~~------------ 505 (574)
+|.|+.... ......+|..+..+|..++.++|+.+. ... ... .++ ++.+
T Consensus 420 ~N~~i~~~~---~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~ 496 (586)
T KOG2007|consen 420 GNAYIRESG---ERPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELC 496 (586)
T ss_pred hhHHHHHhc---cccchHHHHHHHHHHHHHHHHhCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHh
Confidence 999998765 123346778888999999999998741 000 001 111 1111
Q ss_pred -------Hhhcc--------------ccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCCCeEEEECCch
Q 008191 506 -------LKRAD--------------LTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPALPL 564 (574)
Q Consensus 506 -------~~~~~--------------~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~Gt~W~~~~~~ 564 (574)
+...+ +..+++.+..++|..++++|+++++|++|.+++..||.++|.+.++.|+...++
T Consensus 497 d~lR~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 497 DTLRDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred HHHHHhhHHHhhhHHHhCCchHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 00000 112345566778888999999999999999999999999999999999999888
Q ss_pred hhhhhhhc
Q 008191 565 ALQEQAVA 572 (574)
Q Consensus 565 ~~~~~~~~ 572 (574)
..+++...
T Consensus 577 ~~de~g~p 584 (586)
T KOG2007|consen 577 AFDESGLP 584 (586)
T ss_pred ccccCCCC
Confidence 87776543
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-113 Score=924.35 Aligned_cols=463 Identities=49% Similarity=0.858 Sum_probs=411.8
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|.+|+++||||++||+|.|++|+||+|+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec-CceeecCCCCCCcccccCcccc
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~-~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
|++|++++++|.+.|.++|++|||..+++++|+|+|++.|+++|++|+++|+||+++ ++||||+.+++.||+||+++++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999877878999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
++..|.+++.+.+|+||.||+|||.+++|+|+|++|||.||||||||||+|+.++||.++|||+||+||+||||+|++||
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 88889999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQ 394 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~ 394 (574)
++|+++++|+++|+|+|||+++|+|||||+||+|+++|+++.|++|++|||+++++|+++++|+++.+.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-HHHHhhhcchhhhhHHHH
Q 008191 395 TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIN-DLLHTRKGKKQAMRLESL 473 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N-~~~~~~~~~~~~~~~~~l 473 (574)
++.++....... . ..+.........+.+.|.+||+||||||.|++.|+++++.+| ..++. ..+
T Consensus 321 ~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~----------~~~ 384 (465)
T TIGR00435 321 ALRVLDTTLAYS---G---NQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSK----------ADA 384 (465)
T ss_pred HHHHHHhhhccc---c---ccccccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcch----------HHH
Confidence 988764332110 0 001111123446778999999999999999999999999999 43321 012
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCC
Q 008191 474 AALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~ 553 (574)
..+...+..++.+|||+.....+..+. .. ......+|++||++|++||++|||++||+||++|.++||.|+|||
T Consensus 385 ~~~~~~~~~l~~~lg~~~~~~~~~~~~----~~--~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~ 458 (465)
T TIGR00435 385 ALLIEHLIFLESRLGLLLGLPSKPVQA----GS--NDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTP 458 (465)
T ss_pred HHHHHHHHHHHHhcccCccccchhccc----cc--ccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECC
Confidence 335566777888899852111000000 00 000114689999999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 008191 554 VGTTWRP 560 (574)
Q Consensus 554 ~Gt~W~~ 560 (574)
+||+|++
T Consensus 459 ~gt~w~~ 465 (465)
T TIGR00435 459 QGTTWRR 465 (465)
T ss_pred CCceeeC
Confidence 9999974
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-104 Score=828.52 Aligned_cols=373 Identities=38% Similarity=0.657 Sum_probs=346.8
Q ss_pred CCCCCCCCCCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCc
Q 008191 63 TDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142 (574)
Q Consensus 63 ~~~~~~~~~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~d 142 (574)
+|+-+..++.+++|+|||||||+||+|.| +++|+||+||||||+++||||+|++|.+|+++||||+.||+|.||+|+|
T Consensus 5 ~~~~~~~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nit 82 (411)
T TIGR03447 5 APEVPALPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVT 82 (411)
T ss_pred CCCCCCCCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCC
Confidence 34445556677889999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecC----ceeec
Q 008191 143 DVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG----DVYFS 218 (574)
Q Consensus 143 D~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~----~v~f~ 218 (574)
||||||+.+|+++|++|++++++|+++|+++|++|||.+++.++|+|+|++.|+++|++|+++|+||++++ +|||+
T Consensus 83 D~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFd 162 (411)
T TIGR03447 83 DVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFS 162 (411)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEe
Confidence 99999999999999999999999999999999999998899999999999999999999999999999876 89999
Q ss_pred CCCCCCcccccCcccccccC--CCc-cccCC-CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 219 VDKFPEYGQLSGRKLEDNRA--GER-VAVDS-RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 219 ~~~~~~yg~Ls~~~~~~~~~--g~~-v~~~~-~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
++++++||+||+++++++.. +.+ ++.+. .|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++
T Consensus 163 v~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~ 242 (411)
T TIGR03447 163 IEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGF 242 (411)
T ss_pred ccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCce
Confidence 99999999999999988765 454 66644 599999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYR 372 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~ 372 (574)
|||+||+||+||||+||+||++|+.++ +|+++|||+|+|.++|+|||||+||+|+++|+++. |+++++|||++++||+
T Consensus 243 Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr 322 (411)
T TIGR03447 243 DIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYR 322 (411)
T ss_pred ecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCC
Confidence 999999999999999999999999887 99999999999999999999999999999999986 9999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 373 SPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 373 ~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
++++||++.|.++.+.+.+|++++.++. . . .+.++...|.+||+||||++.|++.|+++++
T Consensus 323 ~pl~fs~e~l~~a~~~l~rl~~~~~~~~------------~---~----~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 323 QDRDWTDAVLAEAEARLARWRAALAATD------------A---P----DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhhcc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999998888765321 0 0 1234667899999999999999999999999
Q ss_pred HHHH
Q 008191 453 TIND 456 (574)
Q Consensus 453 ~~N~ 456 (574)
.+|.
T Consensus 384 ~~n~ 387 (411)
T TIGR03447 384 AALS 387 (411)
T ss_pred HHHh
Confidence 9885
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-98 Score=783.17 Aligned_cols=354 Identities=39% Similarity=0.664 Sum_probs=329.1
Q ss_pred ccCCCC-ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 008191 90 KPKVEG-KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCE 168 (574)
Q Consensus 90 ~p~~~~-~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~ 168 (574)
.|.++| +|+||+||||||+++||||+|++|.+|+++|+||++||+|.||+|+|||||||+.+|+++|++|+++|++|++
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 467778 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecC----ceeecCCCCCCcccccCcccccccC--CCc-
Q 008191 169 EFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSGRKLEDNRA--GER- 241 (574)
Q Consensus 169 ~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~----~v~f~~~~~~~yg~Ls~~~~~~~~~--g~~- 241 (574)
+|.++|++|||.+++.+||+|+|++.|+++|++|+++|+||++++ +|||++++++.||+||+++++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999998899999999999999999999999999999988 8999999999999999999888765 555
Q ss_pred cccC-CCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccC
Q 008191 242 VAVD-SRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACN 320 (574)
Q Consensus 242 v~~~-~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~ 320 (574)
++.+ +.|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|+.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 4553 359999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 321 N-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 321 ~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
+ +|+++|||+|+|.++|+|||||+||+|++.++++. ++++++|||+++++|+++++|+++.+.++.+.+.++++++..
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 6 99999999999999999999999999999999874 888899999999999999999999999999999988887653
Q ss_pred HHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008191 399 CEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRK 462 (574)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~ 462 (574)
.. . . .+.++.+.|.+||+||||++.|++.|+++++.+|.|....+
T Consensus 322 ~~------------~---~----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------G---P----DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 20 0 0 23456789999999999999999999999999999985543
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-99 Score=754.39 Aligned_cols=299 Identities=62% Similarity=1.111 Sum_probs=259.9
Q ss_pred cccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 008191 89 VKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCE 168 (574)
Q Consensus 89 f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~ 168 (574)
|+|.++++|+||+||||||+.+||||+|++|.+|+|+|+|+..||+|.+|+|+||+|||||++|+++|+++.+++++|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec-CceeecCCCCCCcccccCcccccccCCCccccCCC
Q 008191 169 EFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSR 247 (574)
Q Consensus 169 ~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~-~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~ 247 (574)
+|.++|++|||.+|+.+||+|+||++|+++|++|+++|+||+++ |+|||+++++++||+||+++++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999989999988888
Q ss_pred ccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEE
Q 008191 248 KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYW 327 (574)
Q Consensus 248 k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~ 327 (574)
|+||.||+|||..+++++.|++|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|+++++|++||
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 328 ~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
||+|||+++|+|||||+||+++++|++++|+++++||+||++||+++++||++.|++|.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999875
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=525.94 Aligned_cols=401 Identities=23% Similarity=0.259 Sum_probs=317.0
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|++.|.|| |++||||++++|.+|+++||+|++|++|.|++|+|+||.||..+|+++|++|+++|++|.+.|+++++
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5666665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcc-------------c-
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYG-------------Q- 227 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg-------------~- 227 (574)
.|||+ +|.|.||| +|.+.+++++++|.++|+||.+...+|||+.| |+.|| .
T Consensus 86 ~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~ 164 (558)
T COG0143 86 ALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRT 164 (558)
T ss_pred HhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCc
Confidence 99996 89999998 69999999999999999999999999999986 44454 2
Q ss_pred ccCccc---ccccCCCccccC------------------CCccCccchhhcccc--------cCCC----Ccc-ccCCcC
Q 008191 228 LSGRKL---EDNRAGERVAVD------------------SRKKNPADFALWKSA--------KEGE----PFW-ESPWGP 273 (574)
Q Consensus 228 Ls~~~~---~~~~~g~~v~~~------------------~~k~~~~Df~lwk~~--------~~g~----~~w-~~~WG~ 273 (574)
+++..+ .+..+|.+.++. .++.+| ||...... +.|. +++ +..||+
T Consensus 165 ~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 165 LDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 333222 222345443221 123344 44332211 1232 455 678999
Q ss_pred cCCC--------CccchhHHHHhh--h---C--------CCce----eeeccccccCccchHHHHHHhhccCCCCceEEE
Q 008191 274 GRPG--------WHIECSAMSAAY--L---G--------HSFD----IHGGGMDLVFPHHENEIAQSCAACNNSHISYWI 328 (574)
Q Consensus 274 g~Pg--------Whiecsam~~~~--l---G--------~~~d----ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~ 328 (574)
++|| |+.+...|+... + | ++-+ +|++||||++||+++||||+++++.+.|.++..
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~a 323 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFA 323 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEe
Confidence 9997 988876665421 1 1 1233 999999999999999999999999998888855
Q ss_pred EeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 008191 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSL 405 (574)
Q Consensus 329 h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~ 405 (574)
|||++++|+|||||+||+|++.++++.|++|++||||++. +..+|.+||++.+.+..|. .+.+-|.+.+....+.+
T Consensus 324 -hg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k 402 (558)
T COG0143 324 -HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK 402 (558)
T ss_pred -eeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999997 9999999999999999874 22344444444444444
Q ss_pred hhhhh----c--CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh-----hhhHH-HH
Q 008191 406 LDAAA----L--KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ-----AMRLE-SL 473 (574)
Q Consensus 406 ~~~~~----~--~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~-----~~~~~-~l 473 (574)
+.++. . ..+.+.+++..+.+..+.+.++| +.+.+++|+..+++|+..+|+|++..++|.- .+++. ++
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl 481 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVL 481 (558)
T ss_pred ccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccCcHHHHHHHH
Confidence 32211 0 01345678888899999999999 9999999999999999999999999987631 23433 34
Q ss_pred HHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 474 AALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 474 ~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+++.++.+..+| ++||.++++++.+|+
T Consensus 482 ~~~~~~~r~la~ll~P~mP~~a~ki~~~L~ 511 (558)
T COG0143 482 YLALELVRVLAILLYPFMPETAEKIWDQLG 511 (558)
T ss_pred HHHHHHHHHHHHHhcCcCcchHHHHHHHhC
Confidence 55555666555555 899999999998875
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-64 Score=488.19 Aligned_cols=213 Identities=60% Similarity=1.028 Sum_probs=209.4
Q ss_pred eeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcC
Q 008191 77 WLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELG 156 (574)
Q Consensus 77 ~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g 156 (574)
+||||+||++++|+|..++++++|+|||||||++||||+|++|.+|+++||+|++|++|.|++|+||||+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccc
Q 008191 157 EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDN 236 (574)
Q Consensus 157 ~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~ 236 (574)
++|++++++|.++|+++|++|||.+||.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999988999998
Q ss_pred cCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHh
Q 008191 237 RAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316 (574)
Q Consensus 237 ~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~ 316 (574)
|||||++|+.++||.++|||++|+||+||||+|++||+.
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCC
Q 008191 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378 (574)
Q Consensus 317 a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs 378 (574)
|+.+++++++|+|+|+|.++|+|||||+||+|+++|++++|++|++|||+++++|+++++|+
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 99888999999999999999999999999999999999999999999999999999999996
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=534.35 Aligned_cols=394 Identities=23% Similarity=0.261 Sum_probs=306.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+..|.+++|||||.+||||+|++|.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++.++|++|.++|.++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCC---------------CCCccc-----------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDK---------------FPEYGQ----------- 227 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~---------------~~~yg~----------- 227 (574)
+|||. +|.++++++ |++.|++++++|.++|++|++.+++|||+.| |..||.
T Consensus 82 ~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 82 ALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 99997 788888885 9999999999999999999999999999987 222332
Q ss_pred --ccC--cccccccCC--CccccCC--------CccCccchhhcccccCCCCccccCCcCcCCC--------Ccc-----
Q 008191 228 --LSG--RKLEDNRAG--ERVAVDS--------RKKNPADFALWKSAKEGEPFWESPWGPGRPG--------WHI----- 280 (574)
Q Consensus 228 --Ls~--~~~~~~~~g--~~v~~~~--------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg--------Whi----- 280 (574)
++. ..+.+...+ ..+..+. .+++..||++|+. +..||++.|+ |+.
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~y 232 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTNY 232 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHHH
Confidence 110 000000000 0111111 0223446655551 3458887776 543
Q ss_pred --------chhHH---HHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceee
Q 008191 281 --------ECSAM---SAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFT 349 (574)
Q Consensus 281 --------ecsam---~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 349 (574)
+|++| ...++ +.|+|++|+|++||||++++||+.+++.+.| +.|+|||||+++|+|||||+||+|+
T Consensus 233 ~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i~ 309 (511)
T PRK11893 233 LTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVID 309 (511)
T ss_pred HhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEEc
Confidence 34433 12223 6799999999999999999999999865555 7789999999999999999999999
Q ss_pred hhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH-H-HHHHHHHHHHHHHHhhhhh-----hhcCCCCChhHHH
Q 008191 350 IRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER-I-FYIYQTLHDCEKALSLLDA-----AALKDSIPPDTVT 421 (574)
Q Consensus 350 ~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~-l-~~l~~~l~~~~~~l~~~~~-----~~~~~~~~~~l~~ 421 (574)
+.|++++||+|++||||++. +++++++|+++.+..+.+. + ..+.+.+.++...+..... .......+.+++.
T Consensus 310 ~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 389 (511)
T PRK11893 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLE 389 (511)
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHH
Confidence 99999999999999999997 8999999999999877653 3 2455555555444332210 0111334567888
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hh-hhHHHHHHHHHHHHHHHhhh-ccccccHH
Q 008191 422 SINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QA-MRLESLAALEKTIRNVLTVL-GLMSTGYS 495 (574)
Q Consensus 422 ~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~ 495 (574)
.+.++.+.+.++| ++++++.|++.|+++++.+|.|++..+++. .. ....++..+...++.+..+| +|+|+.++
T Consensus 390 ~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae 468 (511)
T PRK11893 390 AAAALLERVRAAM-DNLAFDKALEAILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAA 468 (511)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHH
Confidence 8999999999999 999999999999999999999998876532 11 22334555666666666666 89999999
Q ss_pred HHHHHHH
Q 008191 496 EVLLQLR 502 (574)
Q Consensus 496 ~i~~~l~ 502 (574)
++|+.|+
T Consensus 469 ~i~~~L~ 475 (511)
T PRK11893 469 KILDQLG 475 (511)
T ss_pred HHHHHhC
Confidence 9998874
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-59 Score=513.26 Aligned_cols=399 Identities=19% Similarity=0.173 Sum_probs=307.8
Q ss_pred EEEcCC--CCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 99 MYVCGV--TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 99 ~y~cgp--t~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
++++.| +|+|.+||||+++++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|++|.+.|.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 455544 555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--ccCcccccccCCCccccCC------
Q 008191 177 LHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LSGRKLEDNRAGERVAVDS------ 246 (574)
Q Consensus 177 L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls~~~~~~~~~g~~v~~~~------ 246 (574)
|||. +|.|+|+|+ |.+.++++|.+|.++|++|+++..+|||+.|...+-. |-.. ..+..+|..++...
T Consensus 151 l~I~-~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~-~~~~~~~~~~~~~~e~~~ff 228 (616)
T PLN02224 151 LDIA-YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLEN-NCCPVHQMPCVARKEDNYFF 228 (616)
T ss_pred cCCC-CCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCC-CCCCCCCCcceEEecceEEE
Confidence 9995 899999985 9999999999999999999999999999986543321 1100 11223444432211
Q ss_pred ------------CccCccchhhcccc--------cCC----CCccc-cCCcCcCCC--------CccchhHHHHh-----
Q 008191 247 ------------RKKNPADFALWKSA--------KEG----EPFWE-SPWGPGRPG--------WHIECSAMSAA----- 288 (574)
Q Consensus 247 ------------~k~~~~Df~lwk~~--------~~g----~~~w~-~~WG~g~Pg--------Whiecsam~~~----- 288 (574)
+..+| +|..+... +.| .++++ .+||+++|+ |+.+...|+..
T Consensus 229 ~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~ 307 (616)
T PLN02224 229 ALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDN 307 (616)
T ss_pred EhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccc
Confidence 11222 22111110 112 24555 379999996 88777666541
Q ss_pred ---------hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccCh
Q 008191 289 ---------YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHP 359 (574)
Q Consensus 289 ---------~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~ 359 (574)
.++++.++|++|+||++||+++|+|++++++...|.++ ++||||+++|+|||||+||+|+|.|+++.||+
T Consensus 308 ~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l~~yga 386 (616)
T PLN02224 308 KQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELVQKFGP 386 (616)
T ss_pred cccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHHHHcCc
Confidence 12457799999999999999999999998876666666 55799999999999999999999999999999
Q ss_pred hhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHH
Q 008191 360 LALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFL 431 (574)
Q Consensus 360 d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~ 431 (574)
|++||||++. ++.++.+|+++.+.+..|. ...+.|.+.++...+..+.... .....+.++.+.++++.+.+.
T Consensus 387 D~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~ 466 (616)
T PLN02224 387 DAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQ 466 (616)
T ss_pred HHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHH
Confidence 9999999996 8899999999998777552 2233444444333333221111 012235678899999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h---h-hhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q---A-MRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 432 ~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~---~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++| +++++++|+..++++++.+|+|++..++|. . . .....+..+.+.|+.+..+| +|+|+.++++|++|+
T Consensus 467 ~~m-e~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg 545 (616)
T PLN02224 467 TNY-ENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLG 545 (616)
T ss_pred HHH-HhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhC
Confidence 999 999999999999999999999999887652 1 1 12334555667777777776 999999999999874
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=513.13 Aligned_cols=399 Identities=20% Similarity=0.233 Sum_probs=313.2
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+|.|| |++||||+|+++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|++++++|.+.|+++|+
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4677777666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--ccCcccccccCCCccccC------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LSGRKLEDNRAGERVAVD------ 245 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls~~~~~~~~~g~~v~~~------ 245 (574)
+|||. +|.|.|+|+ |.+.+++++++|.++|++|+++..++||+.|...+.. +.. ...+..+|..++..
T Consensus 85 ~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~-~~~c~~cg~~~e~~~~~~~f 162 (648)
T PRK12267 85 KLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD-GGKCPDCGREVELVKEESYF 162 (648)
T ss_pred HcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc-CCcCCCCCCcCeEEecceEE
Confidence 99996 799999985 9999999999999999999999999999886544332 110 01233455543221
Q ss_pred ------------CCccCccch----------h-hcccc--cCCCCccc-cCCcCcCCC--------CccchhHHHHhhhC
Q 008191 246 ------------SRKKNPADF----------A-LWKSA--KEGEPFWE-SPWGPGRPG--------WHIECSAMSAAYLG 291 (574)
Q Consensus 246 ------------~~k~~~~Df----------~-lwk~~--~~g~~~w~-~~WG~g~Pg--------Whiecsam~~~~lG 291 (574)
..+++| +| . -|-.. .+-.++++ .+||++.|+ |+....++... +|
T Consensus 163 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~-~~ 240 (648)
T PRK12267 163 FRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITA-LG 240 (648)
T ss_pred EEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHH-cC
Confidence 112232 22 1 23221 11123444 479999996 88776665432 12
Q ss_pred ------------CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccCh
Q 008191 292 ------------HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHP 359 (574)
Q Consensus 292 ------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~ 359 (574)
++.|+|++|+|+++||..+|+|++++++..+|.++.+ ||||+++|+|||||+||+|+|.|+++.||+
T Consensus 241 ~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~-hg~l~~eg~KMSKS~GN~i~p~d~l~~yga 319 (648)
T PRK12267 241 YGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFA-HGWWLMKDGKMSKSKGNVVDPEELVDRYGL 319 (648)
T ss_pred CCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEe-cceEEECCceecccCCcccCHHHHHHHcCC
Confidence 2568999999999999999999999998778888855 699999999999999999999999999999
Q ss_pred hhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHHHHHHHHH
Q 008191 360 LALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSINKFHNDFL 431 (574)
Q Consensus 360 d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~ 431 (574)
|++||||++. ++.+|.+|+++.+.+..|. .+.+.|.+.++...+.++... ......+.++++.++++.+.+.
T Consensus 320 D~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~ 399 (648)
T PRK12267 320 DALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYE 399 (648)
T ss_pred cHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999986 8999999999999877653 234445544444433332111 1123457889999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhH-HHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ------AMRL-ESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 432 ~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~------~~~~-~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++| ++++++.|+..++++++.+|+|++..++|.. ..++ ..+..+...++.+..+| +|+|+.+++++++|+
T Consensus 400 ~~~-e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg 477 (648)
T PRK12267 400 ELM-EELQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG 477 (648)
T ss_pred HHH-HhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcC
Confidence 999 8999999999999999999999998876521 1122 34455566666666666 899999999998876
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-57 Score=510.23 Aligned_cols=395 Identities=17% Similarity=0.197 Sum_probs=307.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|||.+||||+|+++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|++++++|.+.|+++|++|||. +
T Consensus 10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~-~ 88 (673)
T PRK00133 10 LPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGIS-F 88 (673)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC-C
Confidence 356779999999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc--------------cCcccc
Q 008191 183 SVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL--------------SGRKLE 234 (574)
Q Consensus 183 d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L--------------s~~~~~ 234 (574)
|.++|++ +|++.++++|++|+++|++|++++.+|||+.| ||.||.. .+..+.
T Consensus 89 d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~ 168 (673)
T PRK00133 89 DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELI 168 (673)
T ss_pred CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhc
Confidence 8899998 69999999999999999999999999999886 4444432 111111
Q ss_pred ---cccCCCccccCC------------------CccCccch--------hhcccccCCC----CccccCC-cCcCCC---
Q 008191 235 ---DNRAGERVAVDS------------------RKKNPADF--------ALWKSAKEGE----PFWESPW-GPGRPG--- 277 (574)
Q Consensus 235 ---~~~~g~~v~~~~------------------~k~~~~Df--------~lwk~~~~g~----~~w~~~W-G~g~Pg--- 277 (574)
+..+|..+++.. +.+++ .+ .-|- +.+. ++++..| |++.||
T Consensus 169 ~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l--~~~l~d~~ISR~~~W~GipvP~~~~ 245 (673)
T PRK00133 169 NPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWL--EEGLQDWDISRDAPYFGFEIPGAPG 245 (673)
T ss_pred CCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH--hCCCcccceeeeCCccceECCCCCC
Confidence 112344433211 01111 00 0011 1122 3445679 999996
Q ss_pred -----CccchhHHHHh---------------hhC-C--CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE
Q 008191 278 -----WHIECSAMSAA---------------YLG-H--SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT 334 (574)
Q Consensus 278 -----Whiecsam~~~---------------~lG-~--~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~ 334 (574)
|+.+...|+.. +|. . ...+|++|+||++||.++|||++++.+..+|.++.+ ||||+
T Consensus 246 ~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~-hg~v~ 324 (673)
T PRK00133 246 KVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFA-HGFLT 324 (673)
T ss_pred eEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEee-eccEE
Confidence 87765544321 120 0 123999999999999999999999988777777754 69999
Q ss_pred eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCC-CCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-
Q 008191 335 IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYR-SPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA- 409 (574)
Q Consensus 335 ~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~- 409 (574)
++|+|||||+||+|+|.|+++.||+|++||||++. +.. ++.+|+++.+....+. +.+++|.+.++...+.+....
T Consensus 325 ~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~ 404 (673)
T PRK00133 325 VEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGK 404 (673)
T ss_pred ecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999986 777 8999999998765543 345666666655544332211
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h-hhhHHHHHHHHHHHHHHH
Q 008191 410 ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q-AMRLESLAALEKTIRNVL 484 (574)
Q Consensus 410 ~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~-~~~~~~l~~~~~~l~~~l 484 (574)
......+.+++..++++.+.+.++| ++|+++.|+..++++++.+|+|++..++|. . ......+..+...++.++
T Consensus 405 ~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~ 483 (673)
T PRK00133 405 LPDALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALA 483 (673)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 1123457899999999999999999 899999999999999999999999888652 1 122344556666777777
Q ss_pred hhh-ccccccHHHHHHHHHH
Q 008191 485 TVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 485 ~iL-Gi~p~~~~~i~~~l~~ 503 (574)
.+| +|+|+.++++|+.|+.
T Consensus 484 ~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 484 IYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHhhChhchHHHHHHHHhCC
Confidence 777 8999999999998863
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=494.86 Aligned_cols=400 Identities=21% Similarity=0.214 Sum_probs=308.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
|.+++|+|+|.+||||+|+++.+|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++++.|.+.|+++|++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc--------------cC
Q 008191 179 CLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL--------------SG 230 (574)
Q Consensus 179 I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L--------------s~ 230 (574)
|. +|.++|+++ |++.+++++++|.++|++|++++.+|||+.+ |+.||.- ..
T Consensus 83 I~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 83 IS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 97 788998885 9999999999999999999999999999875 3444421 00
Q ss_pred ccc---ccccCCCccccCC------------------CccCccchhhcccc---------cCCC----CccccC-CcCcC
Q 008191 231 RKL---EDNRAGERVAVDS------------------RKKNPADFALWKSA---------KEGE----PFWESP-WGPGR 275 (574)
Q Consensus 231 ~~~---~~~~~g~~v~~~~------------------~k~~~~Df~lwk~~---------~~g~----~~w~~~-WG~g~ 275 (574)
.++ .+.++|+.++... .+.++ ++..|... ..+. ++++.. ||++.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipv 240 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPV 240 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeC
Confidence 001 1112444433210 11111 12112110 0112 344566 99999
Q ss_pred CCC--------ccchhHHHHh--h-hC--------CCce-----eeeccccccCccchHHHHHHhhccCCCCceEEEEee
Q 008191 276 PGW--------HIECSAMSAA--Y-LG--------HSFD-----IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNG 331 (574)
Q Consensus 276 PgW--------hiecsam~~~--~-lG--------~~~d-----ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g 331 (574)
|+| +.....+... + -| ++.+ +|++|+||+++|+.+|+|+++|++.++|.++ ++||
T Consensus 241 P~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~~~g 319 (530)
T TIGR00398 241 PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-FSHG 319 (530)
T ss_pred CCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-Eeec
Confidence 974 4433333321 0 01 2344 9999999999999999999999987677766 5679
Q ss_pred EEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhh
Q 008191 332 FVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASE--RIFYIYQTLHDCEKALSLLDA 408 (574)
Q Consensus 332 ~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~--~l~~l~~~l~~~~~~l~~~~~ 408 (574)
||+++|+|||||+||+|+|.|++++||+|++|||+++. ++.++++|+++.+.+..| .+.++++++.++...+..+..
T Consensus 320 ~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~ 399 (530)
T TIGR00398 320 YLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFN 399 (530)
T ss_pred cEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999996 789999999999988754 245667776666554443211
Q ss_pred h-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHHHHHHHHH
Q 008191 409 A-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMRLESLAALEKT 479 (574)
Q Consensus 409 ~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~~~~l~~~~~~ 479 (574)
. ......+.++++.++++.+.+.++| ++++++.|++++++|++.+|+|++..+++. ...+...+..+..+
T Consensus 400 ~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~ 478 (530)
T TIGR00398 400 GVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSML 478 (530)
T ss_pred CcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHH
Confidence 0 1122457889999999999999999 999999999999999999999999887542 11223344555566
Q ss_pred HHHHHhhh-ccccccHHHHHHHHH
Q 008191 480 IRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 480 l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++.++.+| +|+|+.++++|+.|+
T Consensus 479 l~~l~~ll~P~~P~~ae~i~~~L~ 502 (530)
T TIGR00398 479 IRVLSILLYPIMPKLSEKILKFLN 502 (530)
T ss_pred HHHHHHHHhCcccHHHHHHHHHhC
Confidence 66666666 899999999998873
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-56 Score=504.61 Aligned_cols=404 Identities=14% Similarity=0.130 Sum_probs=311.8
Q ss_pred ceeEEEcCCCCC--CcCcchhhH-HHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPY--DLSHIGHAR-VYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 96 ~v~~y~cgpt~y--g~~HiGHar-~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
+-++|++.|.|| |++||||++ ++|.+|+++||+|++|++|.|++|+|+||.+|..+|+++|++|++++++|.+.|.+
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 335677765555 999999999 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCC--ccc---------
Q 008191 173 DMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPE--YGQ--------- 227 (574)
Q Consensus 173 ~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~--yg~--------- 227 (574)
++++|||. +|.|.|++ +|.+.++++|++|.++|++|++...++||+.| ||. ||.
T Consensus 96 ~~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce 174 (801)
T PLN02610 96 VYDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCE 174 (801)
T ss_pred HHHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhh
Confidence 99999997 78999998 69999999999999999999999999999886 444 432
Q ss_pred -----ccCccccc---ccCCCccccCC------------------CccCc------cc---hh-hcccc--cCCCCcccc
Q 008191 228 -----LSGRKLED---NRAGERVAVDS------------------RKKNP------AD---FA-LWKSA--KEGEPFWES 269 (574)
Q Consensus 228 -----Ls~~~~~~---~~~g~~v~~~~------------------~k~~~------~D---f~-lwk~~--~~g~~~w~~ 269 (574)
+...++.+ ..+|..++... ++.++ .. .. -|-.. ++-.++++.
T Consensus 175 ~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~ 254 (801)
T PLN02610 175 KCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDL 254 (801)
T ss_pred hccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeec
Confidence 11111111 22344432211 01110 00 00 02111 111245678
Q ss_pred CCcCcCCC----------CccchhHHHHh----------hhCCCce---eeeccccccCccchHHHHHHhhccCC--CCc
Q 008191 270 PWGPGRPG----------WHIECSAMSAA----------YLGHSFD---IHGGGMDLVFPHHENEIAQSCAACNN--SHI 324 (574)
Q Consensus 270 ~WG~g~Pg----------Whiecsam~~~----------~lG~~~d---ih~~G~Dl~fpH~~~~~A~~~a~~~~--~~~ 324 (574)
+||+++|. |+.+..+|+.. +|..+-+ +|++|+||++||+++|||+++|++.+ .|.
T Consensus 255 ~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~ 334 (801)
T PLN02610 255 KWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMK 334 (801)
T ss_pred CCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCC
Confidence 99999982 88777666442 2322224 89999999999999999999999864 566
Q ss_pred eEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHH
Q 008191 325 SYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCE 400 (574)
Q Consensus 325 ~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~ 400 (574)
++ +.|||++++|+|||||+||+|++.++++. ||+|++||||++. +..+|.+||++.|.+..|. .+.+.|.+.|+.
T Consensus 335 ~i-~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~ 413 (801)
T PLN02610 335 TI-SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVL 413 (801)
T ss_pred EE-EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 55799999999999999999999999995 9999999999997 8999999999999999775 334555555554
Q ss_pred HHHh----hhhhhh-------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----
Q 008191 401 KALS----LLDAAA-------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK---- 465 (574)
Q Consensus 401 ~~l~----~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~---- 465 (574)
..+. ++.... ...+.+.++++.+.++.+.+.++| ++++++.|+..++++++.+|+|++..++|.
T Consensus 414 ~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~ 492 (801)
T PLN02610 414 SFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKE 492 (801)
T ss_pred HHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCC
Confidence 4443 121111 012235788899999999999999 999999999999999999999999988753
Q ss_pred hh-hhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 466 QA-MRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 466 ~~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.. ....++..+.+.++.+..+| +|||+.+++++++|+
T Consensus 493 d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg 531 (801)
T PLN02610 493 DKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLN 531 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhC
Confidence 11 22334556667777777777 999999999999886
|
|
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=454.70 Aligned_cols=400 Identities=23% Similarity=0.229 Sum_probs=313.5
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
..+++.|..| ..|||||+++.+++|+++|+.+.+|..|+|.+|+|+||.||...|+.+|..|.++||+..++|.+.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 5677788777 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--cc-----CcccccccCCCcccc--
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LS-----GRKLEDNRAGERVAV-- 244 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls-----~~~~~~~~~g~~v~~-- 244 (574)
.+||. .+.|.|+| .|+..+++++..+.++|++|..++.+|||++++..|.+ +. ......|+.|..|..
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 99996 89999999 59999999999999999999999999999998777654 11 012334555655422
Q ss_pred ----------------CCCccCccchhhcccc--------cCCC----Ccc---ccCCcCcCCC--------CccchhHH
Q 008191 245 ----------------DSRKKNPADFALWKSA--------KEGE----PFW---ESPWGPGRPG--------WHIECSAM 285 (574)
Q Consensus 245 ----------------~~~k~~~~Df~lwk~~--------~~g~----~~w---~~~WG~g~Pg--------Whiecsam 285 (574)
+...+|| +|+..... +.|. +++ ...||++.|| |+++...|
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 1234566 55432211 1122 223 2479999998 98877666
Q ss_pred HHhh--------------hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehh
Q 008191 286 SAAY--------------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIR 351 (574)
Q Consensus 286 ~~~~--------------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~ 351 (574)
+... +|+|..+|++|+|++.||++||||+++|++.++|..+++| ||++.+|.|||||+||||+|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vH-ghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVH-GHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEe-eeeeecceecchhhccccCHH
Confidence 5431 5678899999999999999999999999999999988775 999999999999999999999
Q ss_pred hhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhh-----hhcCCCCChhHH
Q 008191 352 QVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASE-----RIFYIYQTLHDCEKALSLLDA-----AALKDSIPPDTV 420 (574)
Q Consensus 352 d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~-----~l~~l~~~l~~~~~~l~~~~~-----~~~~~~~~~~l~ 420 (574)
+++++||+|++|||||+. ....|.||+++.+....| .+++|.|+...-.-...+... ..........+.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999997 889999999999988775 355555544221111111000 001112235678
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHHHHHHHHHHHHHHhhh-----cccc
Q 008191 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMRLESLAALEKTIRNVLTVL-----GLMS 491 (574)
Q Consensus 421 ~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~~~~l~~~~~~l~~~l~iL-----Gi~p 491 (574)
..+.++++.+.+.+ |+|..+.|+.++++.+++.|.|++..++|+ .+.....+..++..+.++++|+ +|+|
T Consensus 437 ~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~P 515 (578)
T KOG0436|consen 437 DTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAP 515 (578)
T ss_pred HHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 88999999999999 999999999999999999999999988763 2333444444445544555554 4666
Q ss_pred ccHHHHHHHH
Q 008191 492 TGYSEVLLQL 501 (574)
Q Consensus 492 ~~~~~i~~~l 501 (574)
..+.+++.++
T Consensus 516 sls~~llsql 525 (578)
T KOG0436|consen 516 SLSLRLLSQL 525 (578)
T ss_pred hhHHHHHHHc
Confidence 6655555554
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=486.46 Aligned_cols=401 Identities=16% Similarity=0.180 Sum_probs=301.6
Q ss_pred EEEcC--CCCCCcCcchhhHHH-HHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 99 MYVCG--VTPYDLSHIGHARVY-VTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 99 ~y~cg--pt~yg~~HiGHar~~-v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+|+|+ |+|||.+||||++++ |.+|+++||+|++|++|.|++|+||||+||+.+|+++|++++++|++|.+.|.++|+
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555 555599999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcc------cc-------
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYG------QL------- 228 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg------~L------- 228 (574)
+|||. +|.++|++ +|++.+++++++|+++|++|++++.+|||+.| |+.|| ..
T Consensus 85 ~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~ 163 (556)
T PRK12268 85 KLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGAL 163 (556)
T ss_pred HcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcccc
Confidence 99996 79999999 89999999999999999999999999999875 33333 10
Q ss_pred -cCccc---ccccCCCccccCC----------CccC-----------cc----chhhccc--ccCCCCccccCCcCcCC-
Q 008191 229 -SGRKL---EDNRAGERVAVDS----------RKKN-----------PA----DFALWKS--AKEGEPFWESPWGPGRP- 276 (574)
Q Consensus 229 -s~~~~---~~~~~g~~v~~~~----------~k~~-----------~~----Df~lwk~--~~~g~~~w~~~WG~g~P- 276 (574)
....+ .+.++|+.++... .++- |. .+.-|-. .++-.+++...||++.|
T Consensus 164 ~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~ 243 (556)
T PRK12268 164 LDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPW 243 (556)
T ss_pred CChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCC
Confidence 00001 1112333322110 0000 00 0001111 00111334467999999
Q ss_pred -C--------CccchhHHHH----------------hhh--CCCceeeeccccccCccchHHHHHHhhcc--CCCCceEE
Q 008191 277 -G--------WHIECSAMSA----------------AYL--GHSFDIHGGGMDLVFPHHENEIAQSCAAC--NNSHISYW 327 (574)
Q Consensus 277 -g--------Whiecsam~~----------------~~l--G~~~dih~~G~Dl~fpH~~~~~A~~~a~~--~~~~~~~~ 327 (574)
+ |+.....+.. .+| ..+.++|+.|+|+++||..++++++.+.+ .+.|.++
T Consensus 244 ~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v- 322 (556)
T PRK12268 244 PGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI- 322 (556)
T ss_pred CCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe-
Confidence 3 4433322211 122 11446999999999999999999999987 5555566
Q ss_pred EEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 008191 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALS 404 (574)
Q Consensus 328 ~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~ 404 (574)
++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..++++|+++.+....+. +..++|.+.++...+.
T Consensus 323 ~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~ 402 (556)
T PRK12268 323 VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIE 402 (556)
T ss_pred eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999986 7889999999998765432 3345555555444433
Q ss_pred hhhh----hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-----hhhhHHHHHH
Q 008191 405 LLDA----AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-----QAMRLESLAA 475 (574)
Q Consensus 405 ~~~~----~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-----~~~~~~~l~~ 475 (574)
.... .......+.+++..++++.+.+.++| ++|+++.|++.+++|++.+|+|++..+++. .......+..
T Consensus 403 ~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~ 481 (556)
T PRK12268 403 KYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYT 481 (556)
T ss_pred HhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHH
Confidence 3211 11234567899999999999999999 999999999999999999999998776542 1122234455
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+++.++.+| +|+|+.++++|+.|+
T Consensus 482 ~~~~l~~~~~lL~P~~P~~aeei~~~Lg 509 (556)
T PRK12268 482 ALNLVRLLAVLLYPFLPFSAQKIWEMLG 509 (556)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHhC
Confidence 566777777777 999999999998874
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=437.44 Aligned_cols=269 Identities=23% Similarity=0.284 Sum_probs=229.0
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCC-------------ChHHHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE-------------DPISLS 163 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~-------------~~~e~a 163 (574)
..+...+|||||.+||||+|+++.+|+++||+|++|++|.+++|+|+||++|+.+|++.+. +++++|
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFV 81 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHH
Confidence 3466778999999999999999999999999999999999999999999999999999988 899999
Q ss_pred HHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCC
Q 008191 164 RRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAG 239 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g 239 (574)
++|.++|+++|++|||. .| .+.+++ +|++.++++|++|.++|++|++.+.+++...-+..+++++.+.++.+..+
T Consensus 82 ~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~ 160 (312)
T cd00668 82 EEMSGEHKEDFRRLGIS-YDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRG 160 (312)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcC
Confidence 99999999999999997 44 333443 79999999999999999999999999888887778888876655555444
Q ss_pred CccccCCCc-------cCccchhhcccccCCCCccccCCcCcCCCCccch----hH---HHHhhhCC--------Cceee
Q 008191 240 ERVAVDSRK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIEC----SA---MSAAYLGH--------SFDIH 297 (574)
Q Consensus 240 ~~v~~~~~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiec----sa---m~~~~lG~--------~~dih 297 (574)
. +..+..+ +++.||+++ |+++||+++||||++| +. ++..+++. +.|||
T Consensus 161 ~-~~p~~~~~~~~~~l~~~~d~~is---------R~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~ 230 (312)
T cd00668 161 K-IVPEHVKNRMEAWLESLLDWAIS---------RQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWH 230 (312)
T ss_pred C-cCChHHHHHHHHHHhCCCCeEEe---------ccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEE
Confidence 3 2222223 234465553 4679999999999999 43 22233332 68999
Q ss_pred eccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCC-cccccccCceeehhhhhhccChhhHHHHhhcc-CCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDS-EKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSP 374 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~ 374 (574)
++|+|++||||++++|++.++++. ++.++|+| |||+++| +|||||+||+|+++|++++|++|++|||+++. ++++|
T Consensus 231 ~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d 309 (312)
T cd00668 231 LIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDD 309 (312)
T ss_pred EEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCC
Confidence 999999999999999999999877 88999987 9999987 99999999999999999999999999999997 68999
Q ss_pred CCC
Q 008191 375 INY 377 (574)
Q Consensus 375 ~~f 377 (574)
.+|
T Consensus 310 ~~~ 312 (312)
T cd00668 310 IRL 312 (312)
T ss_pred CCC
Confidence 887
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=427.95 Aligned_cols=291 Identities=26% Similarity=0.341 Sum_probs=216.1
Q ss_pred EEcC--CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 100 YVCG--VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 100 y~cg--pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
|+|+ |+|+|.|||||++++|.+|+++||+|++|++|.|++|+|+||.||..+|+++|++|++++++|.+.|++++++|
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4454 66669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCccc--------------cc
Q 008191 178 HCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQ--------------LS 229 (574)
Q Consensus 178 ~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~--------------Ls 229 (574)
||. +|.|.|++ +|.+.+++++++|.++|++|+++..+|||+++ ||.||. +.
T Consensus 82 ~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~ 160 (391)
T PF09334_consen 82 NIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLE 160 (391)
T ss_dssp T----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEE
T ss_pred CCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcc
Confidence 997 78999997 69999999999999999999999999999986 444441 11
Q ss_pred Cccccc---ccCCCccccC----------CC--------ccCccchhhcccc---------cCCC----CccccCCcCcC
Q 008191 230 GRKLED---NRAGERVAVD----------SR--------KKNPADFALWKSA---------KEGE----PFWESPWGPGR 275 (574)
Q Consensus 230 ~~~~~~---~~~g~~v~~~----------~~--------k~~~~Df~lwk~~---------~~g~----~~w~~~WG~g~ 275 (574)
...+.+ ..+|..+.+. .+ +.++ +| |... +.+. ++.+.+||++.
T Consensus 161 ~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~v 237 (391)
T PF09334_consen 161 PEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIPV 237 (391)
T ss_dssp CCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEEE
T ss_pred cccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCccee
Confidence 111111 1233332211 00 0011 11 1110 1111 34467899999
Q ss_pred CC--------CccchhHHHHh----------------hh---CCCceeeeccccccCccchHHHHHHhhccCCCCceEEE
Q 008191 276 PG--------WHIECSAMSAA----------------YL---GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWI 328 (574)
Q Consensus 276 Pg--------Whiecsam~~~----------------~l---G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~ 328 (574)
|+ |+..+.++... +| +....+|++|+||++||.++|+|+++|++.+.|.++ +
T Consensus 238 P~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i-~ 316 (391)
T PF09334_consen 238 PGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI-V 316 (391)
T ss_dssp TTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE-E
T ss_pred eccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE-E
Confidence 96 87766555432 22 112349999999999999999999999888888777 5
Q ss_pred EeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH-----HHHHHHH
Q 008191 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER-----IFYIYQT 395 (574)
Q Consensus 329 h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~-----l~~l~~~ 395 (574)
.|||++++|+|||||+||+|++.|+++.|++|++||||++. +..++.+|+++.+.+..|. ++|+.++
T Consensus 317 ~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R 389 (391)
T PF09334_consen 317 VHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNR 389 (391)
T ss_dssp EE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHH
T ss_pred eeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhc
Confidence 57999999999999999999999999999999999999996 8899999999999998874 6666654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=438.01 Aligned_cols=403 Identities=18% Similarity=0.217 Sum_probs=298.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-cCCChH------------HH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-LGEDPI------------SL 162 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-~g~~~~------------e~ 162 (574)
+..+...+|+|+|.+||||+++++++|+++||+|++||+|.+++|+|.||.+|+.+|++ .|++++ ++
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 34555557888899999999999999999999999999999999999999999999987 488776 69
Q ss_pred HHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc----------
Q 008191 163 SRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL---------- 228 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L---------- 228 (574)
+++|.+.|.++|++||+. .| .+.+|+ +|...++.+|.+|.++|++|++...|+||+.+.......
T Consensus 119 ~~~~~~~~~~~~~~lg~s-~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~ 197 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLS-VDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGK 197 (800)
T ss_pred HHHHHHHHHHHHHHhCee-eccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccce
Confidence 999999999999999997 45 334444 699999999999999999999999999999864322110
Q ss_pred ------------------------------------------cCccc----------------ccccCCCccccCCCccC
Q 008191 229 ------------------------------------------SGRKL----------------EDNRAGERVAVDSRKKN 250 (574)
Q Consensus 229 ------------------------------------------s~~~~----------------~~~~~g~~v~~~~~k~~ 250 (574)
.+..+ .++..|+.+..-...++
T Consensus 198 ~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd 277 (800)
T PRK13208 198 LNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGD 277 (800)
T ss_pred EEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCC
Confidence 00000 00001110000000011
Q ss_pred ccchhhcc------------------------------------------------------------------------
Q 008191 251 PADFALWK------------------------------------------------------------------------ 258 (574)
Q Consensus 251 ~~Df~lwk------------------------------------------------------------------------ 258 (574)
+.||.+.+
T Consensus 278 ~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~q 357 (800)
T PRK13208 278 KTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQ 357 (800)
T ss_pred HHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccce
Confidence 11221100
Q ss_pred --cc-----------------cC------------C-CCcc----ccCCcCcCCCCccc-h-------------------
Q 008191 259 --SA-----------------KE------------G-EPFW----ESPWGPGRPGWHIE-C------------------- 282 (574)
Q Consensus 259 --~~-----------------~~------------g-~~~w----~~~WG~g~PgWhie-c------------------- 282 (574)
-. .| + .+.| ...||.+.|-|+++ |
T Consensus 358 wfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~ 437 (800)
T PRK13208 358 WFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDE 437 (800)
T ss_pred eeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhc
Confidence 00 00 0 0123 34699999977631 1
Q ss_pred --------------------------hH-HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 283 --------------------------SA-MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 283 --------------------------sa-m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
|. +....+| +|.|++++|+|++++|....++++.++.+. ||
T Consensus 438 ~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf 517 (800)
T PRK13208 438 PPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPW 517 (800)
T ss_pred cccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCc
Confidence 00 0001122 367999999999999999999999988776 66
Q ss_pred ceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 324 ~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||++.++++++++|+++.+....+.+.+|+|+++.+..
T Consensus 518 ~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~- 595 (800)
T PRK13208 518 KNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH- 595 (800)
T ss_pred ceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 88866 699985 999999999999999999999999999999997799999999999999988888899988765542
Q ss_pred Hhhhh---hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcch-----hhhhHHH
Q 008191 403 LSLLD---AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGKK-----QAMRLES 472 (574)
Q Consensus 403 l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~~-----~~~~~~~ 472 (574)
..... ........+++++..++.+.+.+.++| ++|+++.|++.|++++. .+|.|++..+++. ...+...
T Consensus 596 ~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 674 (800)
T PRK13208 596 FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSA 674 (800)
T ss_pred cccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHH
Confidence 11100 001122346788999999999999999 89999999999999986 4899998776421 1113344
Q ss_pred HHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 473 LAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 473 l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+..+|+.++.+| +|+|+.++++|+.+.
T Consensus 675 ~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 675 RYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 556667788888887 899999999999885
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=401.72 Aligned_cols=274 Identities=23% Similarity=0.293 Sum_probs=213.4
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
|.++.|+|||++||||+|+++++|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++++++.+.|+++|++||
T Consensus 4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN 83 (319)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44446777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCc-----ccccccCCCccccCCCccCc
Q 008191 179 CLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGR-----KLEDNRAGERVAVDSRKKNP 251 (574)
Q Consensus 179 I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~-----~~~~~~~g~~v~~~~~k~~~ 251 (574)
|. +|.++++++ |++.+++++++|.++|++|+++..++||+.|...+..+... ++.... +.. .+..+.++
T Consensus 84 I~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~--~~l-~~~~~~~~ 159 (319)
T cd00814 84 IS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQ--DRL-LEWLEKNP 159 (319)
T ss_pred Cc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHH--HHH-HHHHHhCC
Confidence 96 789998875 99999999999999999999999999999875433211000 000000 000 00001111
Q ss_pred -----c----chhhcccc--cCCCCcccc-CCcCcCCC--------CccchhHHHHh--------------hhCCCceee
Q 008191 252 -----A----DFALWKSA--KEGEPFWES-PWGPGRPG--------WHIECSAMSAA--------------YLGHSFDIH 297 (574)
Q Consensus 252 -----~----Df~lwk~~--~~g~~~w~~-~WG~g~Pg--------Whiecsam~~~--------------~lG~~~dih 297 (574)
. ...-|-.. .+-..+++. .||++.|+ |+....+++.. ..+++.++|
T Consensus 160 ~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (319)
T cd00814 160 DFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVH 239 (319)
T ss_pred ccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEE
Confidence 0 11112111 011245566 89998885 76544443221 124477899
Q ss_pred eccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPIN 376 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~ 376 (574)
++|+|+++||+++|+|++.+++.++| +.+++|||++++|+|||||+||+|++.|+++.|++|++|||+++. +..++.+
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~-~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~ 318 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLP-TRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSD 318 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCC-cEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998875544 455889999999999999999999999999999999999999996 8889988
Q ss_pred C
Q 008191 377 Y 377 (574)
Q Consensus 377 f 377 (574)
|
T Consensus 319 f 319 (319)
T cd00814 319 F 319 (319)
T ss_pred C
Confidence 7
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=431.50 Aligned_cols=404 Identities=19% Similarity=0.225 Sum_probs=298.1
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH----cCCCh------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE----LGEDP------------ 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~----~g~~~------------ 159 (574)
+..|+...|+++|.+||||++++++.|+++||.||+|++|.++.|+|.||.+|+..+++ .|+++
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~ 113 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKI 113 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHH
Confidence 45666667888899999999999999999999999999999999999999988876553 46655
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc-cc-cc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-------
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVE-PR-VS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL------- 228 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~-~r-~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L------- 228 (574)
++++++|...+.++|++||+. .|+. ++ |+ .|.+.++++|.+|+++|++|++...|+||+.|.......
T Consensus 114 ~~~~~~~~~~~~~~~~~lG~s-~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~ 192 (861)
T TIGR00422 114 WEWKEESGGTIKNQIKRLGAS-LDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHhCee-eecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccc
Confidence 578999999999999999997 4532 11 22 699999999999999999999999999998864322110
Q ss_pred -----------------------------------------------cCccc----------------ccccCCCccccC
Q 008191 229 -----------------------------------------------SGRKL----------------EDNRAGERVAVD 245 (574)
Q Consensus 229 -----------------------------------------------s~~~~----------------~~~~~g~~v~~~ 245 (574)
.|..+ .++..|+.+...
T Consensus 193 ~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~ 272 (861)
T TIGR00422 193 KGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKV 272 (861)
T ss_pred cceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEe
Confidence 00000 000011110000
Q ss_pred CCccCccchhh------------------------------------------------------------cc-------
Q 008191 246 SRKKNPADFAL------------------------------------------------------------WK------- 258 (574)
Q Consensus 246 ~~k~~~~Df~l------------------------------------------------------------wk------- 258 (574)
....+|.||.. |+
T Consensus 273 ~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~ 352 (861)
T TIGR00422 273 TPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEP 352 (861)
T ss_pred cCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEE
Confidence 00001111100 00
Q ss_pred --------------c-----ccCC-------------------C----CccccCCcCcCCCCccc-hhH-----------
Q 008191 259 --------------S-----AKEG-------------------E----PFWESPWGPGRPGWHIE-CSA----------- 284 (574)
Q Consensus 259 --------------~-----~~~g-------------------~----~~w~~~WG~g~PgWhie-csa----------- 284 (574)
. .+.+ . .++...||.+.|.|+++ |..
T Consensus 353 ~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~ 432 (861)
T TIGR00422 353 LLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPD 432 (861)
T ss_pred EecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhh
Confidence 0 0000 1 12235799999998742 311
Q ss_pred --------------------------HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceE
Q 008191 285 --------------------------MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISY 326 (574)
Q Consensus 285 --------------------------m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~ 326 (574)
+-...+| +|.|+|+.|+|++|+|..++++++.++.++ ||.++
T Consensus 433 ~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v 512 (861)
T TIGR00422 433 DKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEV 512 (861)
T ss_pred hhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheE
Confidence 0001123 367899999999999999999999999776 55888
Q ss_pred EEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008191 327 WIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALS 404 (574)
Q Consensus 327 ~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~ 404 (574)
++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++. +.+++++|+++.+.+..+.+.+|+|+.+.+...+.
T Consensus 513 ~~-hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~ 591 (861)
T TIGR00422 513 YI-HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLS 591 (861)
T ss_pred EE-eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77 499996 8999999999999999999999999999999987 55999999999999998888899996655543322
Q ss_pred hhh--h--hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcch----hhhhHHHHH
Q 008191 405 LLD--A--AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKK----QAMRLESLA 474 (574)
Q Consensus 405 ~~~--~--~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~----~~~~~~~l~ 474 (574)
... . .......+++++..++.+.+.+.++| ++|+++.|+..|++|+ ..+|.|++..+++. ...+.....
T Consensus 592 ~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~ 670 (861)
T TIGR00422 592 DDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARD 670 (861)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHH
Confidence 110 0 01123456889999999999999999 9999999999999997 78999999877431 122334556
Q ss_pred HHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 475 ALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 475 ~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+..+|..++.+| +|+|+.++++|+.|.
T Consensus 671 ~l~~~l~~~~~lL~Pf~P~itEelw~~L~ 699 (861)
T TIGR00422 671 TLYYVLDKALRLLHPFMPFITEEIWQHFK 699 (861)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhCc
Confidence 6677788888888 899999999999985
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=409.00 Aligned_cols=416 Identities=19% Similarity=0.221 Sum_probs=313.0
Q ss_pred ccccccCCC---CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH----HHHHHHcCCC
Q 008191 86 RELVKPKVE---GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI----IARANELGED 158 (574)
Q Consensus 86 ~~~f~p~~~---~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI----~~~A~~~g~~ 158 (574)
...|.|..+ ....|.+++|+|.|.+|||||.++.+.|+|+||.||+||+|.+..|+|.+|..+ ++...++|++
T Consensus 21 ~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~ 100 (877)
T COG0525 21 SGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGIT 100 (877)
T ss_pred cCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 347777643 237888899999999999999999999999999999999999999999999544 4444445654
Q ss_pred ------------hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC
Q 008191 159 ------------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP 223 (574)
Q Consensus 159 ------------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~ 223 (574)
.+|+.+++...+.+.|++||++......|-| +....+++.|-+|+++|+||..++-|.+|+.|-.
T Consensus 101 r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~T 180 (877)
T COG0525 101 RHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRT 180 (877)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCcccc
Confidence 4788999999999999999997432233334 6889999999999999999999999999987621
Q ss_pred -----------------------------------------------------CcccccCcccc----------------
Q 008191 224 -----------------------------------------------------EYGQLSGRKLE---------------- 234 (574)
Q Consensus 224 -----------------------------------------------------~yg~Ls~~~~~---------------- 234 (574)
.|-.|.|+.+.
T Consensus 181 AiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~V 260 (877)
T COG0525 181 AISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYV 260 (877)
T ss_pred chhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCccc
Confidence 11111111110
Q ss_pred cccCCCccccCCCccCccchhhcccc------------------------------------------------------
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSA------------------------------------------------------ 260 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~------------------------------------------------------ 260 (574)
++.-|+.+..-..-+++.||..||+.
T Consensus 261 D~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V 340 (877)
T COG0525 261 DPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSV 340 (877)
T ss_pred CCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccC
Confidence 00111110000012233444444320
Q ss_pred ---------------------------------cCCCC-------------------ccc----cCCcCcCCCCcc-chh
Q 008191 261 ---------------------------------KEGEP-------------------FWE----SPWGPGRPGWHI-ECS 283 (574)
Q Consensus 261 ---------------------------------~~g~~-------------------~w~----~~WG~g~PgWhi-ecs 283 (574)
+.|++ .|. .-||...|-|++ +|.
T Consensus 341 ~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g 420 (877)
T COG0525 341 GHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECG 420 (877)
T ss_pred ccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCC
Confidence 00111 111 248999999988 662
Q ss_pred HH--------------------------------HHh-----hhCC-----------CceeeeccccccCccchHHHHHH
Q 008191 284 AM--------------------------------SAA-----YLGH-----------SFDIHGGGMDLVFPHHENEIAQS 315 (574)
Q Consensus 284 am--------------------------------~~~-----~lG~-----------~~dih~~G~Dl~fpH~~~~~A~~ 315 (574)
.. ++. .+|+ |.++-+.|.||+||+..+.+.++
T Consensus 421 ~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~ 500 (877)
T COG0525 421 NVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRG 500 (877)
T ss_pred cEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHH
Confidence 11 000 1232 56788999999999999999999
Q ss_pred hhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHH
Q 008191 316 CAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYI 392 (574)
Q Consensus 316 ~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l 392 (574)
..+.++ ||..+++ ||+|.. +|+|||||+||||+|.|++++||+|+|||+++.. +.++|++|+++.++..+|...++
T Consensus 501 ~~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKl 579 (877)
T COG0525 501 LHLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKL 579 (877)
T ss_pred HHhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHH
Confidence 998875 8888866 599986 7999999999999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcc--
Q 008191 393 YQTLHDCEKALSLLDAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGK-- 464 (574)
Q Consensus 393 ~~~l~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~-- 464 (574)
||+.+.+...+...... ......++|++..++++.+.+.++| |+|++..|...|++|+. .|+.|++-.+..
T Consensus 580 WNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~ 658 (877)
T COG0525 580 WNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARALYEFIWNDFCDWYLELAKPRLY 658 (877)
T ss_pred HhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Confidence 99887765544322110 1113567999999999999999999 99999999999999984 578999877731
Q ss_pred -hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 465 -KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 465 -~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
....+.++...+..+|..++++| +|||+.+|++|+.+..
T Consensus 659 ~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~ 699 (877)
T COG0525 659 GGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG 699 (877)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC
Confidence 12234456677788899999998 9999999999998754
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=419.68 Aligned_cols=404 Identities=19% Similarity=0.209 Sum_probs=293.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHH----HHHHHHHcCCChHH-----------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPIS----------- 161 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~k----I~~~A~~~g~~~~e----------- 161 (574)
..+...+|+|+|.+||||++++++.|+++||.|++|++|.++.|+|.||.. |.+.+.+.|+++.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 555666788889999999999999999999999999999999999999964 44555556777654
Q ss_pred -HHHHHHHHHHHHHHhcCCCCCCCc-cccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC-------ccc--
Q 008191 162 -LSRRYCEEFHQDMVDLHCLPPSVE-PRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE-------YGQ-- 227 (574)
Q Consensus 162 -~a~~~~~~f~~~l~~L~I~~~d~~-~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~-------yg~-- 227 (574)
++++|.+.+.++|++||+. .|+. .+.| +|...++++|.+|+++|+||++...|+||+.+... |..
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s-~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~ 196 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGAS-CDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK 196 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcc-eecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccccccc
Confidence 5999999999999999997 4432 1222 68999999999999999999999999999886321 100
Q ss_pred --------------------------------------------ccCcccc----------------cccCCCccccCCC
Q 008191 228 --------------------------------------------LSGRKLE----------------DNRAGERVAVDSR 247 (574)
Q Consensus 228 --------------------------------------------Ls~~~~~----------------~~~~g~~v~~~~~ 247 (574)
|.|..+. ++..|+.+..-..
T Consensus 197 ~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 276 (874)
T PRK05729 197 GKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITP 276 (874)
T ss_pred ceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecC
Confidence 0000000 0001111000000
Q ss_pred ccCccchhhccc--------------------------------------------------------------------
Q 008191 248 KKNPADFALWKS-------------------------------------------------------------------- 259 (574)
Q Consensus 248 k~~~~Df~lwk~-------------------------------------------------------------------- 259 (574)
.++|.||..++.
T Consensus 277 ah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~ 356 (874)
T PRK05729 277 AHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYL 356 (874)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEe
Confidence 011111111100
Q ss_pred ------------------ccCC-------------------C----CccccCCcCcCCCCccch----------------
Q 008191 260 ------------------AKEG-------------------E----PFWESPWGPGRPGWHIEC---------------- 282 (574)
Q Consensus 260 ------------------~~~g-------------------~----~~w~~~WG~g~PgWhiec---------------- 282 (574)
.+.+ . .++...||.+.|-|+++-
T Consensus 357 ~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~ 436 (874)
T PRK05729 357 SDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKA 436 (874)
T ss_pred cCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCccccccccc
Confidence 0001 1 122356999999775420
Q ss_pred --------------hH-HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEE-
Q 008191 283 --------------SA-MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVT- 334 (574)
Q Consensus 283 --------------sa-m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~- 334 (574)
|+ +-...+| +|.|+|+.|+|++|+|....++++.++.++ |+.++++| |+|+
T Consensus 437 ~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d 515 (874)
T PRK05729 437 LLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRD 515 (874)
T ss_pred CeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEEC
Confidence 00 0001123 367999999999999988888888877776 56889875 9998
Q ss_pred eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Q 008191 335 IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA---- 409 (574)
Q Consensus 335 ~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---- 409 (574)
.+|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+....+.+.+|+|+.+.+...+......
T Consensus 516 ~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~ 595 (874)
T PRK05729 516 EQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPD 595 (874)
T ss_pred CCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccc
Confidence 59999999999999999999999999999999987 8999999999999999888889998766554332221100
Q ss_pred -hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcchh-hhhHHHHHHHHHHHHHHHh
Q 008191 410 -ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKKQ-AMRLESLAALEKTIRNVLT 485 (574)
Q Consensus 410 -~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~~-~~~~~~l~~~~~~l~~~l~ 485 (574)
......+++++..++++.+.+.++| ++|+++.|+..|++|+ ..+|.|++..+++.. ..+......+..+|+.++.
T Consensus 596 ~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l~~~~~ 674 (874)
T PRK05729 596 PEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILR 674 (874)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1122346889999999999999999 9999999999999998 578999998775411 1133445566778888888
Q ss_pred hh-ccccccHHHHHHHHHH
Q 008191 486 VL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 486 iL-Gi~p~~~~~i~~~l~~ 503 (574)
+| +|+|+.++++|+.+..
T Consensus 675 lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 675 LLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHcccchhhHHHHHHhccc
Confidence 88 8999999999999863
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=416.32 Aligned_cols=404 Identities=18% Similarity=0.193 Sum_probs=290.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH----HHHHcCCC------------h
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA----RANELGED------------P 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~----~A~~~g~~------------~ 159 (574)
+..+..++|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.+|.+++. .+.+.|++ +
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~ 168 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRV 168 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 3555556788899999999999999999999999999999999999999987755 44444654 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-ccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc-
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSV-EPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ- 227 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~-~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~- 227 (574)
++++++|...+.+.|++||+. .|+ .++.| +|...++++|.+|+++|++|++...|+||+.+.. .|..
T Consensus 169 ~~~~~~~~~~~~~~~~~lG~s-~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~ 247 (958)
T PLN02943 169 WEWKEKYGGTITNQIKRLGAS-CDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 247 (958)
T ss_pred HHHHHHHHHHHHHHHHHhCcc-eecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccc
Confidence 567899999999999999997 343 23333 6889999999999999999999999999988621 0100
Q ss_pred ----------c------------------------------------cCcccc-----------------cccCCCcccc
Q 008191 228 ----------L------------------------------------SGRKLE-----------------DNRAGERVAV 244 (574)
Q Consensus 228 ----------L------------------------------------s~~~~~-----------------~~~~g~~v~~ 244 (574)
+ .+.... ++..|+.+..
T Consensus 248 ~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~ 327 (958)
T PLN02943 248 PGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLK 327 (958)
T ss_pred cccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEE
Confidence 0 000000 0000111000
Q ss_pred CCCccCccchhhccc--------------------------------------------------------c--------
Q 008191 245 DSRKKNPADFALWKS--------------------------------------------------------A-------- 260 (574)
Q Consensus 245 ~~~k~~~~Df~lwk~--------------------------------------------------------~-------- 260 (574)
-...+++.||.+++. .
T Consensus 328 ~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~ 407 (958)
T PLN02943 328 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 407 (958)
T ss_pred eCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEec
Confidence 000111122221110 0
Q ss_pred ------------------cCCC-------------------Ccc----ccCCcCcCCCCccc---hhH------------
Q 008191 261 ------------------KEGE-------------------PFW----ESPWGPGRPGWHIE---CSA------------ 284 (574)
Q Consensus 261 ------------------~~g~-------------------~~w----~~~WG~g~PgWhie---csa------------ 284 (574)
..++ ..| ...||.+.|.|+++ |+.
T Consensus 408 ~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~ 487 (958)
T PLN02943 408 KQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEAL 487 (958)
T ss_pred cceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHH
Confidence 0011 112 24699999999964 321
Q ss_pred ------------HHH----------------hhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 285 ------------MSA----------------AYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 285 ------------m~~----------------~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
+.. ..+| +|.|+++.|+|++|++....+++...+.++ |+
T Consensus 488 ~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf 567 (958)
T PLN02943 488 EKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPF 567 (958)
T ss_pred HHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCCh
Confidence 000 0123 357899999999988655555555555455 77
Q ss_pred ceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 324 ~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
.++|+| |+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+....+.+.+|+|+.+.+...
T Consensus 568 ~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~ 646 (958)
T PLN02943 568 SYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQN 646 (958)
T ss_pred heEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899997 7765 69999999999999999999999999999999999899999999999999888888999987766543
Q ss_pred Hhhh-------------hhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhc
Q 008191 403 LSLL-------------DAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKG 463 (574)
Q Consensus 403 l~~~-------------~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~ 463 (574)
+... ... ......+++++..++.+.+.+.++| ++|+++.|+..+++|+ ..+|.|++..++
T Consensus 647 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kp 725 (958)
T PLN02943 647 LPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYDFFWSDFADWYIEASKT 725 (958)
T ss_pred cccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3210 000 0112346889999999999999999 9999999999999995 789999998764
Q ss_pred ch-----hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 464 KK-----QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 464 ~~-----~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.. ...+......+..++..++.+| ||+|+.++++|+.+.
T Consensus 726 rl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~ 770 (958)
T PLN02943 726 RLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALP 770 (958)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcC
Confidence 21 1122334455566777788887 999999999999985
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=413.48 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=167.8
Q ss_pred CCceeeeccccccCccchHHHHHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|+|++|+||+++|+.++++++.|... .++++.|+|||||+++|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 47899999999999999999999888755 4566888999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHH-HHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVL-AALS 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al-~~l~ 448 (574)
++++|++|+++.+.++.+.+.++++++.++...... .........+.+++..++.+.+.+.++| ++|+++.|+ ..++
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~-~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~ 729 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNL-ETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALF 729 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999988765432210 0000123456889999999999999999 899999999 7899
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++++.+|.|+...+. +.. ..+..+|+.++.+| +|+|+.++++|+.|+
T Consensus 730 ~~~~~~n~Yl~~~~~-----~~~--~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg 777 (938)
T TIGR00395 730 DLQADVDWYRRRGGV-----NHK--DVLARYLETWIKLLAPFAPHFAEEMWEEVG 777 (938)
T ss_pred HHHHHHHHHHHhCcc-----hHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHcC
Confidence 999999999864321 111 13556677777777 899999999999884
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=393.02 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=281.8
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
.+++|.|++|||||+|++||||+|+++++|+++|+|++.||+|.+++|+||+|++|...+.+.+..++++++++.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCcee-eecCceeecCCCCCCcccccCcccccccCCCccccCCCcc
Q 008191 173 DMVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKK 249 (574)
Q Consensus 173 ~l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY-~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~ 249 (574)
+|++|||. +|.++++++ |.+.+++++++|.++|++| +.+|.+||+++.+ |.
T Consensus 189 ~l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~~---------------------- 242 (507)
T PRK01611 189 DLDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---GD---------------------- 242 (507)
T ss_pred HHHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---CC----------------------
Confidence 99999997 687887774 4678999999999999999 8899999986543 21
Q ss_pred CccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEE
Q 008191 250 NPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWI 328 (574)
Q Consensus 250 ~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~ 328 (574)
+ .|+++||. +|.+.|.+ ..++||++|..- + ...|.+.|.|+. .|.....+.+++++..+. .++++
T Consensus 243 ~-~~~vl~ks--dG~~~Y~t----~Dia~~~~k~~~----~--d~~i~V~g~~q~-~hf~~~~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 243 D-KDRVLIKS--DGTYTYFT----RDIAYHLYKFER----F--DRVIYVVGADHH-GHFKRLKAALKALGYDPDALEVLL 308 (507)
T ss_pred C-CCeEEEEC--CCCccchH----HHHHHHHHHHhh----c--CEEEEEECCChH-HHHHHHHHHHHHcCCCcccceEEE
Confidence 0 16777775 44433322 133455554321 2 345666677643 122223366666665433 36678
Q ss_pred Eee--EEEe-CCcccccccCceeehhhhhhc-cCh----------------hhHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 008191 329 HNG--FVTI-DSEKMSKSLGNFFTIRQVMEL-YHP----------------LALRLFLIGTHYRSPINYSVVQLESASER 388 (574)
Q Consensus 329 h~g--~v~~-~G~KMSKS~Gn~i~~~d~l~~-~~~----------------d~lR~~ll~~~~~~~~~fs~~~l~~a~~~ 388 (574)
|.. +|.. +|+|||||+||+|+++|++++ ++. |++||++|+.++.++++|+++.+.+..+.
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 744 4443 578999999999999999999 999 99999999999999999999998887652
Q ss_pred H-HHHHHHHHHHHHHHhhhhhhh-------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh
Q 008191 389 I-FYIYQTLHDCEKALSLLDAAA-------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHT 460 (574)
Q Consensus 389 l-~~l~~~l~~~~~~l~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~ 460 (574)
- -++.++..++.+.+.+....+ ..++.+.+++..+..+.+.+.+++ ++++++.++.++++|++.+|+||+.
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~~f~~fY~~ 467 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAGAFHSFYNR 467 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 155566666666655432100 113446789999999999999999 9999999999999999999999975
Q ss_pred hhc--c---hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 461 RKG--K---KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 461 ~~~--~---~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
.+. . ....|+.++.++..+|...|.+|||.+
T Consensus 468 ~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~ 503 (507)
T PRK01611 468 VLLKDEEEELRNARLALVKATAQVLKNGLDLLGISA 503 (507)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 531 1 124688899999999999999999976
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=407.19 Aligned_cols=403 Identities=16% Similarity=0.187 Sum_probs=288.1
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-----cCCC------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-----LGED------------ 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-----~g~~------------ 158 (574)
+..|+..+|+++|.+||||++++++.|+++||+||+||+|.|+.|+|+||.++....++ .|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~ 128 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLER 128 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHH
Confidence 46677778888899999999999999999999999999999999999999998775543 2433
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCC-ccc---ccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSV-EPR---VSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ 227 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~-~~r---~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~ 227 (574)
+++++++|.+.+.++|++||+. .|+ .++ ..+|...++++|.+|+++|++|++...|+||+.|-. .|+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~lG~s-~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e 207 (1052)
T PRK14900 129 VWAWKEQYGSRIGEQHKALGAS-LDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE 207 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHhchh-eecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC
Confidence 3568899999999999999997 443 223 237999999999999999999999999999988621 1110
Q ss_pred ------------c-----------------------------------cCcc-----------------cccccCCCccc
Q 008191 228 ------------L-----------------------------------SGRK-----------------LEDNRAGERVA 243 (574)
Q Consensus 228 ------------L-----------------------------------s~~~-----------------~~~~~~g~~v~ 243 (574)
+ .+.. ..++..|+.+.
T Consensus 208 ~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V 287 (1052)
T PRK14900 208 AHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAV 287 (1052)
T ss_pred CCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeE
Confidence 0 0000 00000111100
Q ss_pred cCCCccCccchhhcccc---------------------------------------------------------------
Q 008191 244 VDSRKKNPADFALWKSA--------------------------------------------------------------- 260 (574)
Q Consensus 244 ~~~~k~~~~Df~lwk~~--------------------------------------------------------------- 260 (574)
.-...+++.||.+++..
T Consensus 288 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 288 KVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred EecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceE
Confidence 00001122233222110
Q ss_pred -----------------------cCC-------------------CCcc----ccCCcCcCCCCccc-------------
Q 008191 261 -----------------------KEG-------------------EPFW----ESPWGPGRPGWHIE------------- 281 (574)
Q Consensus 261 -----------------------~~g-------------------~~~w----~~~WG~g~PgWhie------------- 281 (574)
..+ ...| ...||.+.|.|+++
T Consensus 368 e~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~ 447 (1052)
T PRK14900 368 EPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEA 447 (1052)
T ss_pred EEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEeccccccc
Confidence 000 0112 34699999999753
Q ss_pred ---hh-------------------HHHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceEE
Q 008191 282 ---CS-------------------AMSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYW 327 (574)
Q Consensus 282 ---cs-------------------am~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~ 327 (574)
|. .+.. .+| +|.|+|++|+|++++|....+++.....+. ||.+++
T Consensus 448 ~~~~~~~~~~~~~dVlDvWFdS~l~y~s-~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~ 526 (1052)
T PRK14900 448 CSTCGKAELRQDEDVLDTWFSSGLWPFS-TMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVY 526 (1052)
T ss_pred ccccCccceecCCceEEEEEcCChHHHH-HHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeE
Confidence 10 1111 122 367899999999988666555555555555 556775
Q ss_pred EEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008191 328 IHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL 405 (574)
Q Consensus 328 ~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~ 405 (574)
+ ||||+. +|+|||||+||+|+|.|++++||+|+|||||++. ++++|++|+++.+....+.+.+++|..+.+...+..
T Consensus 527 ~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~ 605 (1052)
T PRK14900 527 L-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSG 605 (1052)
T ss_pred e-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5 699998 9999999999999999999999999999999986 899999999999988777777888855444322222
Q ss_pred hh-hh-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc---h-hhhhHHHH
Q 008191 406 LD-AA-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK---K-QAMRLESL 473 (574)
Q Consensus 406 ~~-~~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~---~-~~~~~~~l 473 (574)
+. .. ......+.+++..++.+...+.++| ++|+++.|+..+++|+ ..+|.|++..+.. . ...+....
T Consensus 606 ~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~ 684 (1052)
T PRK14900 606 YQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQ 684 (1052)
T ss_pred cCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHHHHHHH
Confidence 21 00 0112356889999999999999999 9999999999999997 5899999976632 1 11122334
Q ss_pred HHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 474 AALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 474 ~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+..+|+.++.+| +|+|+.++++|+.|.
T Consensus 685 ~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~ 714 (1052)
T PRK14900 685 AVLVHCLQTSYRLLHPFMPFITEELWHVLR 714 (1052)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhc
Confidence 45666777777777 899999999999985
|
|
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=376.09 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=206.6
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
.|.+..|+|+|.+||||+|+++.+|+++|++|++|++|.+++|+||+|+||+.+|++.|+++++++++|.++|+++|++|
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCc--cccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-----cCcccccccCCCccccCCCc
Q 008191 178 HCLPPSVE--PRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL-----SGRKLEDNRAGERVAVDSRK 248 (574)
Q Consensus 178 ~I~~~d~~--~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L-----s~~~~~~~~~g~~v~~~~~k 248 (574)
||. +|.. .+++ +|++.+++++.+|.++|++|++++.+|||+....-|=++ .....+.+.... . .....
T Consensus 83 gi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~-~-~p~~~ 159 (314)
T cd00812 83 GFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLD-G-WPEEV 159 (314)
T ss_pred ccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcC-c-CCHHH
Confidence 996 5643 3333 688899999999999999999999999996542222122 111111111110 0 00000
Q ss_pred cCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHH----hhh----------------------CCCceeeeccc
Q 008191 249 KNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSA----AYL----------------------GHSFDIHGGGM 301 (574)
Q Consensus 249 ~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~----~~l----------------------G~~~dih~~G~ 301 (574)
+ ..+..|.. .+++.+||+++|+ |+++|-..+. .|+ -++.|||++|+
T Consensus 160 ~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~ 232 (314)
T cd00812 160 R--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGK 232 (314)
T ss_pred H--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecch
Confidence 1 12334443 5667899999994 7776632111 111 02689999999
Q ss_pred cccCccch---HHHHHHhhccC---CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCC
Q 008191 302 DLVFPHHE---NEIAQSCAACN---NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375 (574)
Q Consensus 302 Dl~fpH~~---~~~A~~~a~~~---~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~ 375 (574)
|++++|+. .+.+++.+++. .++.++ +++|||+++|+|||||+||+|+++|++++|++|++||++++... ++.
T Consensus 233 D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 233 EHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDA 310 (314)
T ss_pred hHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCC
Confidence 99999984 55566655553 555566 57899999999999999999999999999999999999999855 999
Q ss_pred CCCH
Q 008191 376 NYSV 379 (574)
Q Consensus 376 ~fs~ 379 (574)
+|++
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9874
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=376.69 Aligned_cols=274 Identities=19% Similarity=0.211 Sum_probs=208.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc---------CCCh-------H
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL---------GEDP-------I 160 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~---------g~~~-------~ 160 (574)
..+....|||||.+||||+++++.+|+++||+|++|++|.|++|+|+||.+|+..|+++ ++++ +
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCW 82 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999998765 3444 4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccc
Q 008191 161 SLSRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDN 236 (574)
Q Consensus 161 e~a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~ 236 (574)
+++++|.++|++++++|||. .| .+.+++ +|.+.+++++.+|.++|++|++...++||+.|..... ...+ +.
T Consensus 83 ~~~~~~~~~~~~~~~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~---~~ev-c~ 157 (382)
T cd00817 83 EWKEESGGKIREQLKRLGAS-VDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAIS---DIEV-CS 157 (382)
T ss_pred HHHHHHHHHHHHHHHHhCce-eecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCC---cchh-cc
Confidence 68999999999999999997 34 555665 6999999999999999999999999999998743222 1111 11
Q ss_pred cCCCccccC------------------CCccCccc---------hhhcccc-cCCCCccccCCcCcCCCCccc-------
Q 008191 237 RAGERVAVD------------------SRKKNPAD---------FALWKSA-KEGEPFWESPWGPGRPGWHIE------- 281 (574)
Q Consensus 237 ~~g~~v~~~------------------~~k~~~~D---------f~lwk~~-~~g~~~w~~~WG~g~PgWhie------- 281 (574)
++|..+... ..+.++.. +.-|-.. .+-.+++...||++.|.|+.+
T Consensus 158 ~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~ 237 (382)
T cd00817 158 RSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVV 237 (382)
T ss_pred cCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEe
Confidence 233332210 01111100 1111111 111234567899999977542
Q ss_pred -------------------------------------hhHHHHhhhC-----------CCceeeeccccccCccchHHHH
Q 008191 282 -------------------------------------CSAMSAAYLG-----------HSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 282 -------------------------------------csam~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A 313 (574)
++++.. .+| +|.|+|++|+|++++|+.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~-~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~ 316 (382)
T cd00817 238 AREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFS-TLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIM 316 (382)
T ss_pred cchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHH-HhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHH
Confidence 111211 111 3679999999999999999999
Q ss_pred HHhhccCC-CCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCC
Q 008191 314 QSCAACNN-SHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINY 377 (574)
Q Consensus 314 ~~~a~~~~-~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~f 377 (574)
++.++.+. ++.++++| |+|+ .+|+|||||+||+|+++|++++||+|++|||+++. ++.+|.+|
T Consensus 317 ~~~~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 317 RGLKLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 99998776 45888775 8888 79999999999999999999999999999999997 68898887
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=398.35 Aligned_cols=405 Identities=20% Similarity=0.235 Sum_probs=291.6
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCC----------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GED---------------- 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~---------------- 158 (574)
+..++..+|+++|.+||||++++++.|+++||.||+||+|.+..|+|.||.+|+..+++. |++
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~ 121 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEK 121 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHH
Confidence 456666778888999999999999999999999999999999999999999999999774 654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------C--cc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------E--YG 226 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~--yg 226 (574)
+++++.+|.+.+.+.+++||+......++.| +|++.++.+|.+|+++|++|++...|+||+.|.. . |.
T Consensus 122 c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~ 201 (975)
T PRK06039 122 CRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYK 201 (975)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhccc
Confidence 6799999999999999999986321122333 6899999999999999999999999999988631 1 21
Q ss_pred c-----------ccC-c----------------------cccc----------c------------------------c-
Q 008191 227 Q-----------LSG-R----------------------KLED----------N------------------------R- 237 (574)
Q Consensus 227 ~-----------Ls~-~----------------------~~~~----------~------------------------~- 237 (574)
. +.+ . .++. . .
T Consensus 202 ~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~ 281 (975)
T PRK06039 202 DVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSE 281 (975)
T ss_pred ccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCcc
Confidence 1 100 0 0000 0 0
Q ss_pred -CCCc----------------------cccC--------CCccCccchhhcccc--------------------------
Q 008191 238 -AGER----------------------VAVD--------SRKKNPADFALWKSA-------------------------- 260 (574)
Q Consensus 238 -~g~~----------------------v~~~--------~~k~~~~Df~lwk~~-------------------------- 260 (574)
.|.+ |..+ ....++.||..++..
T Consensus 282 L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v 361 (975)
T PRK06039 282 LEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFV 361 (975)
T ss_pred ccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCH
Confidence 0000 0000 000112233322210
Q ss_pred ----------------------------------------------------------------------cC--------
Q 008191 261 ----------------------------------------------------------------------KE-------- 262 (574)
Q Consensus 261 ----------------------------------------------------------------------~~-------- 262 (574)
+.
T Consensus 362 ~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~ 441 (975)
T PRK06039 362 KDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLE 441 (975)
T ss_pred HHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHh
Confidence 00
Q ss_pred CCCcc----ccCCcCcCCCCccc-hhH----------------------------------------H------------
Q 008191 263 GEPFW----ESPWGPGRPGWHIE-CSA----------------------------------------M------------ 285 (574)
Q Consensus 263 g~~~w----~~~WG~g~PgWhie-csa----------------------------------------m------------ 285 (574)
+...| ...||.+.|.|+++ |.. |
T Consensus 442 ~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFd 521 (975)
T PRK06039 442 NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFD 521 (975)
T ss_pred cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceee
Confidence 00112 23599999999864 410 0
Q ss_pred ----HHhhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCce
Q 008191 286 ----SAAYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNF 347 (574)
Q Consensus 286 ----~~~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~ 347 (574)
....+| +|.|+++.|+|+++++...-.+++.++.+. ||.++++ ||||+. +|+|||||+||+
T Consensus 522 Sg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlGNv 600 (975)
T PRK06039 522 SGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLGNY 600 (975)
T ss_pred cCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCCCc
Confidence 000112 367899999999998766666666666654 7788866 599986 899999999999
Q ss_pred eehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHh--hhhhh------hcCCCCCh
Q 008191 348 FTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQ-LESASERIFYIYQTLHDCEKALS--LLDAA------ALKDSIPP 417 (574)
Q Consensus 348 i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~-l~~a~~~l~~l~~~l~~~~~~l~--~~~~~------~~~~~~~~ 417 (574)
|+|.|++++||+|++|||+++. +.+++++|+++. +....+.+.+++|+++++..+.. .+... ......++
T Consensus 601 IdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~ 680 (975)
T PRK06039 601 VDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDR 680 (975)
T ss_pred CCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHH
Confidence 9999999999999999999998 469999999999 55566778888888776543221 11000 11123467
Q ss_pred hHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHHHhhhc--ch---hhhhHHHHHHHHHHHHHHHhhh-ccc
Q 008191 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI-NDLLHTRKG--KK---QAMRLESLAALEKTIRNVLTVL-GLM 490 (574)
Q Consensus 418 ~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~-N~~~~~~~~--~~---~~~~~~~l~~~~~~l~~~l~iL-Gi~ 490 (574)
+++..++.+.+.+.++| ++|+++.|++.|++|+..+ |.|++..+. +. ...+......+..+|..++.+| +|+
T Consensus 681 wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~ 759 (975)
T PRK06039 681 WILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFT 759 (975)
T ss_pred HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999 8999999999999999876 667776542 21 1223445556667777788887 899
Q ss_pred cccHHHHHHHHH
Q 008191 491 STGYSEVLLQLR 502 (574)
Q Consensus 491 p~~~~~i~~~l~ 502 (574)
|+.++++|+.|.
T Consensus 760 Pf~aEei~~~L~ 771 (975)
T PRK06039 760 PFIAEEIYQNLT 771 (975)
T ss_pred HHHHHHHHHhcc
Confidence 999999999986
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=395.99 Aligned_cols=403 Identities=19% Similarity=0.187 Sum_probs=287.6
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc------CCChH-------HHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL------GEDPI-------SLS 163 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~------g~~~~-------e~a 163 (574)
..+....|+++|.+||||++++++.|+++||.|++|++|.|+.|+|.||.+|+.+++++ +.++. +++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 34444456677999999999999999999999999999999999999999999999885 56665 599
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc------
Q 008191 164 RRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ------ 227 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~------ 227 (574)
+++.+.+.+++++||+.. .+....|. +|...++++|.+|+++|++|++...|+||+.+.. .|+.
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~ 210 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSI 210 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceE
Confidence 999999999999999963 22222332 6899999999999999999999999999988631 1111
Q ss_pred -----ccC---------ccc--------------------cc-----------c--------------------------
Q 008191 228 -----LSG---------RKL--------------------ED-----------N-------------------------- 236 (574)
Q Consensus 228 -----Ls~---------~~~--------------------~~-----------~-------------------------- 236 (574)
+.+ ..+ +. .
T Consensus 211 yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 290 (912)
T PRK05743 211 YVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFK 290 (912)
T ss_pred EEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEec
Confidence 000 000 00 0
Q ss_pred ---cCCC-----------------ccccC--------CCccCccchhhcccc----------------------------
Q 008191 237 ---RAGE-----------------RVAVD--------SRKKNPADFALWKSA---------------------------- 260 (574)
Q Consensus 237 ---~~g~-----------------~v~~~--------~~k~~~~Df~lwk~~---------------------------- 260 (574)
..|. .|..+ ...+++.||..++..
T Consensus 291 G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~e 370 (912)
T PRK05743 291 GKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFK 370 (912)
T ss_pred hHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHH
Confidence 0000 00000 000112233322210
Q ss_pred --------------------------------cC-------------C--------------------------------
Q 008191 261 --------------------------------KE-------------G-------------------------------- 263 (574)
Q Consensus 261 --------------------------------~~-------------g-------------------------------- 263 (574)
++ .
T Consensus 371 a~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~ 450 (912)
T PRK05743 371 ANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVEN 450 (912)
T ss_pred hHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHhc
Confidence 00 0
Q ss_pred CCccc----cCCcCcCCCCccc-hh-------HH--H-------------------------Hhh---------------
Q 008191 264 EPFWE----SPWGPGRPGWHIE-CS-------AM--S-------------------------AAY--------------- 289 (574)
Q Consensus 264 ~~~w~----~~WG~g~PgWhie-cs-------am--~-------------------------~~~--------------- 289 (574)
.+.|. .-||.+.|-|+.+ |. .. + ..+
T Consensus 451 ~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~ 530 (912)
T PRK05743 451 RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGS 530 (912)
T ss_pred CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCC
Confidence 01221 2489999988752 30 00 0 000
Q ss_pred -----------hCCCceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh
Q 008191 290 -----------LGHSFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 290 -----------lG~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~ 355 (574)
..+|.|+|++|+|+++ ||...++++.. .+..||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 531 s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~-HG~vld~~G~KMSKSlGNvIdP~~ii~ 608 (912)
T PRK05743 531 SHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLT-HGFTVDGKGRKMSKSLGNVIDPQDVIK 608 (912)
T ss_pred CHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEE-eeeEECCCCCCCCCCCCCcCCHHHHHH
Confidence 1247899999999997 55777777665 34456777755 699996 99999999999999999999
Q ss_pred ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhcCCCCChhHHHHHHHHHHH
Q 008191 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDA------AALKDSIPPDTVTSINKFHND 429 (574)
Q Consensus 356 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~------~~~~~~~~~~l~~~l~~~~~~ 429 (574)
+||+|+||||++++++++|++|+++.+.+..+.+.+|+|+++.+...+..... .......+.+++..++++.+.
T Consensus 609 ~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~ 688 (912)
T PRK05743 609 KYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEE 688 (912)
T ss_pred hcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHH
Confidence 99999999999998999999999999999888888888887766544432111 011234578899999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 430 FLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 430 ~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
+.++| ++|++++|++.|++|+ ...|.|++..+.. ....+......+..++..++.+| +|+|+.++++|+.
T Consensus 689 v~~~~-e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~ 767 (912)
T PRK05743 689 ILEAY-ENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQY 767 (912)
T ss_pred HHHHH-HhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999 9999999999999999 4568888866531 11122223233445566667777 8999999999999
Q ss_pred HH
Q 008191 501 LR 502 (574)
Q Consensus 501 l~ 502 (574)
+.
T Consensus 768 l~ 769 (912)
T PRK05743 768 LP 769 (912)
T ss_pred cc
Confidence 84
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=387.31 Aligned_cols=385 Identities=20% Similarity=0.256 Sum_probs=279.1
Q ss_pred eEEEcC--CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCG--VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cg--pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+ |+|+|.+||||+++++++|+++||+|++|++|.|++|+|+||.+|+.+|.+.|++|.+++++|.+.|+++|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 466665 455599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC-------------CCccc-----------
Q 008191 176 DLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF-------------PEYGQ----------- 227 (574)
Q Consensus 176 ~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~-------------~~yg~----------- 227 (574)
+||+. .|+ +.+++ +|.+.++++|.+|+++|++|++...|+||+.|. ..||.
T Consensus 113 ~lGi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f 191 (805)
T PRK00390 113 SLGFS-YDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWF 191 (805)
T ss_pred HhCCc-ccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceee
Confidence 99997 553 34443 799999999999999999999999999998862 11211
Q ss_pred -------------------------------------------ccC--ccc--------------------cc----cc-
Q 008191 228 -------------------------------------------LSG--RKL--------------------ED----NR- 237 (574)
Q Consensus 228 -------------------------------------------Ls~--~~~--------------------~~----~~- 237 (574)
+.+ ..+ +. ..
T Consensus 192 ~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~ 271 (805)
T PRK00390 192 LKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLA 271 (805)
T ss_pred EecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhh
Confidence 000 000 00 00
Q ss_pred --------------------------------CCCc-----------------cccC--------CCccCccchhhcccc
Q 008191 238 --------------------------------AGER-----------------VAVD--------SRKKNPADFALWKSA 260 (574)
Q Consensus 238 --------------------------------~g~~-----------------v~~~--------~~k~~~~Df~lwk~~ 260 (574)
.|.. |..+ ...+++.||..++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 351 (805)
T PRK00390 272 EQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKY 351 (805)
T ss_pred cchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHc
Confidence 0000 0000 001122355444321
Q ss_pred c-----------------------CC------------------------------C-------Cccc----cCCcCcCC
Q 008191 261 K-----------------------EG------------------------------E-------PFWE----SPWGPGRP 276 (574)
Q Consensus 261 ~-----------------------~g------------------------------~-------~~w~----~~WG~g~P 276 (574)
. .| . ..|. .-||.+.|
T Consensus 352 ~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIP 431 (805)
T PRK00390 352 GLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIP 431 (805)
T ss_pred CCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCcee
Confidence 0 00 0 1122 24899999
Q ss_pred CCcc-chhHH----------------------------------------------------------HHhhhC------
Q 008191 277 GWHI-ECSAM----------------------------------------------------------SAAYLG------ 291 (574)
Q Consensus 277 gWhi-ecsam----------------------------------------------------------~~~~lG------ 291 (574)
-||. +|..+ ...+..
T Consensus 432 i~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~ 511 (805)
T PRK00390 432 IIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEA 511 (805)
T ss_pred EEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccC
Confidence 8875 34210 000000
Q ss_pred ----------CCceeeeccccccCccchHHH---HHHh--h-ccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhh
Q 008191 292 ----------HSFDIHGGGMDLVFPHHENEI---AQSC--A-ACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVM 354 (574)
Q Consensus 292 ----------~~~dih~~G~Dl~fpH~~~~~---A~~~--a-~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l 354 (574)
+|.|+.++|.|++.-|..+.. +.+. + ..+ .|+.++ +||||| |||||+||+|+|.+++
T Consensus 512 ~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i 585 (805)
T PRK00390 512 PFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDII 585 (805)
T ss_pred cCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHH
Confidence 368999999998744433221 1111 1 223 466665 889999 9999999999999999
Q ss_pred hccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008191 355 ELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 355 ~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
++||+|++|||+++. +++++++|+++.+.++.+.+.++++++........... ......+++++..++++.+.+.++
T Consensus 586 ~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~ 663 (805)
T PRK00390 586 EKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTED 663 (805)
T ss_pred HHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999984 99999999999999999999999998876322211110 112245689999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
| ++|+++.|++.|++|+..+++|+.. .....+..++..++.+| +|+|+.+|++|+.+.
T Consensus 664 ~-e~~~f~~ai~~l~~f~n~lsk~~~~----------~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~ 722 (805)
T PRK00390 664 I-ERLRFNTAIAALMELVNALYKAEDE----------QDKAVLREALEILVRLLAPFAPHLAEELWEKLG 722 (805)
T ss_pred H-HcCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcC
Confidence 9 8999999999999999999998721 01123455667777777 899999999999874
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=391.65 Aligned_cols=211 Identities=18% Similarity=0.161 Sum_probs=170.0
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccC
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTH 370 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~ 370 (574)
+|.|+|+.|+|++++|...-++++.++++.+|.+.+++||||+. +|+|||||+||+|+|.+++++||+|+|||||++++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 36789999999999876666677777777655555577899998 89999999999999999999999999999999876
Q ss_pred C--CCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHhhh--------hhh------hcCCCCChhHHHHHHHHHHHHHHH
Q 008191 371 Y--RSPINYSVVQLESASE-RIFYIYQTLHDCEKALSLL--------DAA------ALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 371 ~--~~~~~fs~~~l~~a~~-~l~~l~~~l~~~~~~l~~~--------~~~------~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
+ .++++|+++.+.+..+ .+.+++|+++.+...+... ... ......++|++..++++.+.+.++
T Consensus 646 ~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~ 725 (1159)
T PLN02882 646 VVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREE 725 (1159)
T ss_pred cccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 6889999999987754 6778888876665544321 000 011245789999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHH-HHHHHHHhhhcch-----hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLK-TINDLLHTRKGKK-----QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~-~~N~~~~~~~~~~-----~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
| ++|++++|+..|++|+. .+|.|++..+++. ...+...+..+..+|..++.+| +|+|+.++++|++|..
T Consensus 726 m-e~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 726 M-GAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred H-HccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 9 99999999999999997 5899999877531 2234556677778888888887 8999999999999863
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=385.95 Aligned_cols=392 Identities=20% Similarity=0.236 Sum_probs=283.1
Q ss_pred CceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++-++|++ .|+|+|.+||||+++++++|+++||+|++||+|.|++|+|+||.+|+.+|.+.|++|.++++++.+.|.+
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44456666 4666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC--------------Ccccc------
Q 008191 173 DMVDLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--------------EYGQL------ 228 (574)
Q Consensus 173 ~l~~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--------------~yg~L------ 228 (574)
+|++||+. .|+ +.+++ +|...++++|.+|+++|++|++...|+||+.|.. .||.-
T Consensus 107 ~~~~lG~~-~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~ 185 (842)
T TIGR00396 107 QLQALGFS-YDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKEL 185 (842)
T ss_pred HHHHhCCc-ccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeec
Confidence 99999997 443 44444 7999999999999999999999999999988631 12110
Q ss_pred ------------------------------------------------cC--ccc--------------------ccc--
Q 008191 229 ------------------------------------------------SG--RKL--------------------EDN-- 236 (574)
Q Consensus 229 ------------------------------------------------s~--~~~--------------------~~~-- 236 (574)
.+ ..+ +..
T Consensus 186 ~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~ 265 (842)
T TIGR00396 186 KQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLV 265 (842)
T ss_pred ceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHH
Confidence 00 000 000
Q ss_pred -----------------------------------cCCCc-----------------cccC--------CCccCccchhh
Q 008191 237 -----------------------------------RAGER-----------------VAVD--------SRKKNPADFAL 256 (574)
Q Consensus 237 -----------------------------------~~g~~-----------------v~~~--------~~k~~~~Df~l 256 (574)
..|.. |..+ ...+++.||..
T Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~ 345 (842)
T TIGR00396 266 EKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEF 345 (842)
T ss_pred HhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHH
Confidence 00000 0000 00112245554
Q ss_pred ccccc---------------------CC-------------------------------------CCccc----cCCcCc
Q 008191 257 WKSAK---------------------EG-------------------------------------EPFWE----SPWGPG 274 (574)
Q Consensus 257 wk~~~---------------------~g-------------------------------------~~~w~----~~WG~g 274 (574)
++... .| ...|. .-||.+
T Consensus 346 ~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~P 425 (842)
T TIGR00396 346 AQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEP 425 (842)
T ss_pred HHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCc
Confidence 44210 00 01122 248998
Q ss_pred CCCCccc-hhHH-----------H------------------------------------------------Hhh-----
Q 008191 275 RPGWHIE-CSAM-----------S------------------------------------------------AAY----- 289 (574)
Q Consensus 275 ~PgWhie-csam-----------~------------------------------------------------~~~----- 289 (574)
.|-||++ |..+ . ..|
T Consensus 426 IPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~ 505 (842)
T TIGR00396 426 IPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKN 505 (842)
T ss_pred eEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCC
Confidence 8888752 3110 0 000
Q ss_pred ---------h--CCCceeeeccccccCccchHHHH---HHh---hccC-CCCceEEEEeeEEEe-----CCc--------
Q 008191 290 ---------L--GHSFDIHGGGMDLVFPHHENEIA---QSC---AACN-NSHISYWIHNGFVTI-----DSE-------- 338 (574)
Q Consensus 290 ---------l--G~~~dih~~G~Dl~fpH~~~~~A---~~~---a~~~-~~~~~~~~h~g~v~~-----~G~-------- 338 (574)
+ -.|+|+.++|+|++.-|..+... .+. ...+ .|+.++ +.+|||+. +|+
T Consensus 506 ~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~ 584 (842)
T TIGR00396 506 TDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTE 584 (842)
T ss_pred cCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhc
Confidence 0 03688999999987555444221 111 1223 466777 55799997 787
Q ss_pred -------------------ccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 339 -------------------KMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 339 -------------------KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
|||||+||+|+|.+++++||+|++|||+++. +++++++|+++.+..+.+.+.+|++++..
T Consensus 585 ~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~ 664 (842)
T TIGR00396 585 RDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYN 664 (842)
T ss_pred cccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999964 99999999999999999999999999877
Q ss_pred HHHHHhhhh--hhhcCCCCChhHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHH
Q 008191 399 CEKALSLLD--AAALKDSIPPDTVTSINKFHNDFLASMSDDLH-TTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA 475 (574)
Q Consensus 399 ~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n-~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~ 475 (574)
+...+.... ........+++++..++++.+.+.++| ++++ ++.|++.|++|+..+.++... ..
T Consensus 665 ~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~l~~f~n~L~~~~~~-------------~~ 730 (842)
T TIGR00396 665 ILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISAMMILLNALYKAKKD-------------AL 730 (842)
T ss_pred HHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhhhhH-------------HH
Confidence 544332210 001123456889999999999999999 7877 999999999999877664210 12
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+|..++.+| +|+|+.+||+|+.+.
T Consensus 731 l~~~l~~ll~lLaPf~PhiaEElW~~l~ 758 (842)
T TIGR00396 731 YLEYLKGFLTVLSPFAPHLAEELWEKLG 758 (842)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhC
Confidence 445666777777 899999999999884
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.71 Aligned_cols=275 Identities=23% Similarity=0.272 Sum_probs=201.3
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCCh----------------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDP---------------- 159 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~---------------- 159 (574)
..+....|||||++||||+|+++++|+++||+|++||+|.+++|+||||.+|..+|++. |+++
T Consensus 3 f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~ 82 (338)
T cd00818 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKC 82 (338)
T ss_pred eEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHH
Confidence 45666789999999999999999999999999999999999999999999999999886 7764
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC---CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--CC----CcccccC
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPP---SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--FP----EYGQLSG 230 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~---d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--~~----~yg~Ls~ 230 (574)
+++|++|.++|.++|++|||..+ ...+..++|++.++++|++|+++|++|++++.+||.+.- .+ ++.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~ 162 (338)
T cd00818 83 REFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKD 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHH
Confidence 79999999999999999999643 234444589999999999999999999999999994321 11 1111111
Q ss_pred cccccccCCCccccCCCccCccchhhcccc-cCCCCccccCCcCcCCCCccc-h-------------------h-HHHHh
Q 008191 231 RKLEDNRAGERVAVDSRKKNPADFALWKSA-KEGEPFWESPWGPGRPGWHIE-C-------------------S-AMSAA 288 (574)
Q Consensus 231 ~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~-~~g~~~w~~~WG~g~PgWhie-c-------------------s-am~~~ 288 (574)
..++.+ .......+..+. .+.-|-.. ++-..++...||++.|.|.++ | . .++..
T Consensus 163 ~l~~~~-~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 163 RLLEAN-DKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHH-hcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 111111 000000010111 11112211 111234567899999977653 2 1 12211
Q ss_pred -h------hC--CCceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhc
Q 008191 289 -Y------LG--HSFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 289 -~------lG--~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
+ +. ++.|+++.|+||++ +|...++++. +.+..+|.++|+| ||++. +|+|||||+||+|+++|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 1 11 36789999999997 7878877765 3345677899885 77764 899999999999999999999
Q ss_pred cChhhHHHHhhcc-CCCCCCCC
Q 008191 357 YHPLALRLFLIGT-HYRSPINY 377 (574)
Q Consensus 357 ~~~d~lR~~ll~~-~~~~~~~f 377 (574)
||+|++||||++. +..+|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999997 68898876
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=384.79 Aligned_cols=209 Identities=21% Similarity=0.174 Sum_probs=169.8
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh---------ccChh
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME---------LYHPL 360 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~---------~~~~d 360 (574)
+|.|+|+.|+|++|+|....+.++.++.+. |+.++|+| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 478899999999998887777777777776 77999887 88776 89999999999999999999 79999
Q ss_pred hHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHHHHHHHHHHHHH
Q 008191 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSINKFHNDFLASMS 435 (574)
Q Consensus 361 ~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~am~ 435 (574)
+||||+++.+|+++++|+.+.+.++.+.+.+|+++++.+...+...... ......+++++..++++.+.+.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999988766554432110 1112347889999999999999999
Q ss_pred ccCCHHHHHHHHHHH--HHHHHHHHHhhhcch------hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 436 DDLHTTVVLAALSDP--LKTINDLLHTRKGKK------QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 436 dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~------~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++|++++|++.|+++ ...+|.|++..+++. ...+......+..++..++.+| +|+|+.++++|+.+.
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~ 796 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLP 796 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcc
Confidence 999999999999988 568999999877531 1122222223445556666666 899999999999985
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=379.47 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=157.6
Q ss_pred CceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|.|+|++|+|+++ +|...++++.. .+..||.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 564 P~d~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhccHHHHHHHHHHHH-cCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 5789999999999 55555555433 23457788866 599986 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHH--HHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCH
Q 008191 370 HYRSPINYSVVQLESASERIF-YIYQTLHDCE--KALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~--~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~ 440 (574)
++.++++|+++.+....+.+. .++|+++.+. ..+.++... ......+.+++..++++.+.+.++| ++|++
T Consensus 642 ~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~ 720 (861)
T TIGR00392 642 DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNF 720 (861)
T ss_pred CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccH
Confidence 999999999999988776554 4555666554 333222110 1112346788999999999999999 89999
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhhc--ch---hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 441 TVVLAALSDPLKT--INDLLHTRKG--KK---QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 441 ~~al~~l~~l~~~--~N~~~~~~~~--~~---~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+.|++.|++++.. .|.|++..+. +. ..........+..+++.++.+| +|+|+.++++|+.+.
T Consensus 721 ~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~ 790 (861)
T TIGR00392 721 HKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLP 790 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcc
Confidence 9999999999875 7999987653 21 1111233344556666677777 899999999999885
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=380.04 Aligned_cols=404 Identities=17% Similarity=0.204 Sum_probs=295.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-----cCCC------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-----LGED------------ 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-----~g~~------------ 158 (574)
+..|....|+|+|.+||||++++++.|+++||.||+||+|.++.|+|.||.++..++++ .|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~ 208 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSE 208 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHH
Confidence 35666667888899999999999999999999999999999999999999999887754 3554
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCC-ccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cc--
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSV-EPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EY-- 225 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~-~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~y-- 225 (574)
+++++++|...+.+.+++||+.. |+ .++.| +|...++.+|.+|+++|++|++...|+||+.|-. .|
T Consensus 209 ~~~~~~~~~~~~~~q~~~lG~s~-Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d 287 (1066)
T PLN02381 209 VWKWKDEYGGTILNQLRRLGASL-DWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID 287 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHhCchh-ccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhc
Confidence 35889999999999999999973 32 22222 7999999999999999999999999999987521 00
Q ss_pred ------------------cc-------ccCc---------cc-------------cccc----CCC--------------
Q 008191 226 ------------------GQ-------LSGR---------KL-------------EDNR----AGE-------------- 240 (574)
Q Consensus 226 ------------------g~-------Ls~~---------~~-------------~~~~----~g~-------------- 240 (574)
|. +.+. .+ ++.+ .|.
T Consensus 288 ~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi 367 (1066)
T PLN02381 288 IKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPII 367 (1066)
T ss_pred cccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEE
Confidence 10 0000 00 0000 010
Q ss_pred ----ccccC--------CCccCccchhhcccc------------------------------------------------
Q 008191 241 ----RVAVD--------SRKKNPADFALWKSA------------------------------------------------ 260 (574)
Q Consensus 241 ----~v~~~--------~~k~~~~Df~lwk~~------------------------------------------------ 260 (574)
.|+.+ ...+++.||..++..
T Consensus 368 ~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~ 447 (1066)
T PLN02381 368 CDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAK 447 (1066)
T ss_pred ECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecce
Confidence 01000 001222344333210
Q ss_pred ------------------------------------------cCCC-------------------Cccc----cCCcCcC
Q 008191 261 ------------------------------------------KEGE-------------------PFWE----SPWGPGR 275 (574)
Q Consensus 261 ------------------------------------------~~g~-------------------~~w~----~~WG~g~ 275 (574)
..+. ..|. .-||.+.
T Consensus 448 ~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pI 527 (1066)
T PLN02381 448 NNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRI 527 (1066)
T ss_pred eeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCcc
Confidence 0011 1121 2499999
Q ss_pred CCCccc--------hh--------H--------------------HH----------------HhhhC-----------C
Q 008191 276 PGWHIE--------CS--------A--------------------MS----------------AAYLG-----------H 292 (574)
Q Consensus 276 PgWhie--------cs--------a--------------------m~----------------~~~lG-----------~ 292 (574)
|-|++. |. + |. ...+| +
T Consensus 528 Piw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~ 607 (1066)
T PLN02381 528 PAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 607 (1066)
T ss_pred ceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccC
Confidence 999862 00 0 10 01134 3
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh---------------
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME--------------- 355 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~--------------- 355 (574)
|.|+...|.|++|++....+.++.++.++ ||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 608 P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 608 PTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 67889999999999988888888877765 7777855 599996 89999999999999999998
Q ss_pred ----------------------ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---
Q 008191 356 ----------------------LYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL-LDA--- 408 (574)
Q Consensus 356 ----------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~-~~~--- 408 (574)
+||+|+||||+++. ...++++|+.+.+...++.+.+|||+++.+...+.. +..
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~ 766 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPAT 766 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccc
Confidence 79999999999986 678899999999998899999999998876544321 100
Q ss_pred --hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH--HHHHHHHHHhhhcch-------hhhhHHHHHHHH
Q 008191 409 --AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP--LKTINDLLHTRKGKK-------QAMRLESLAALE 477 (574)
Q Consensus 409 --~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~-------~~~~~~~l~~~~ 477 (574)
.......++|++..++.+...+.++| ++|+++.|++.|++| ...+|.|++..+... ...+......+.
T Consensus 767 ~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~ 845 (1066)
T PLN02381 767 LSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLW 845 (1066)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHH
Confidence 01112457899999999999999999 999999999999999 567899999887421 112333344556
Q ss_pred HHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 478 KTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 478 ~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+|..++.+| +|+|+.++++|+.+.
T Consensus 846 ~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 846 ICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 6777778887 899999999999985
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=379.04 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=164.8
Q ss_pred CCceeeeccccccC--ccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhh
Q 008191 292 HSFDIHGGGMDLVF--PHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367 (574)
Q Consensus 292 ~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll 367 (574)
+|.|+|+.|+|+++ ||. -..++.++.+. |+.++++| ||++. +|+|||||+||+|+|.+++++||+|+||||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 46889999999997 555 45566666665 66888775 99987 99999999999999999999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHH
Q 008191 368 GTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTT 441 (574)
Q Consensus 368 ~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~ 441 (574)
+.++++|++|+++.+.+..+.+.+|+|+++.+...+..+... ......+++++..++++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999998888888999887665544432111 1112346889999999999999999 999999
Q ss_pred HHHHHHHHHH-H-HHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 442 VVLAALSDPL-K-TINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 442 ~al~~l~~l~-~-~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|++.+++++ . ..|.|++..+.+ ....+......+..+++.++.+| +|+|+.++++|+.+.
T Consensus 738 ~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRY 807 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Confidence 9999999999 4 469999877632 11123333344555666677777 899999999999986
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=381.20 Aligned_cols=405 Identities=17% Similarity=0.172 Sum_probs=293.1
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH-----HHcCCCh----------
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA-----NELGEDP---------- 159 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A-----~~~g~~~---------- 159 (574)
++..+....|+|+|.+||||++++++.|+++||.|++|++|.++.|+|.||..+.... .+.|.++
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~ 139 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHH
Confidence 3456666778888999999999999999999999999999999999999998774332 3445543
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC---------
Q 008191 160 --ISLSRRYCEEFHQDMVDLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE--------- 224 (574)
Q Consensus 160 --~e~a~~~~~~f~~~l~~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~--------- 224 (574)
++++++|.+.+.++|++||+. .|+ ...|. +|...++++|.+|+++|++|++...|+||+.|-..
T Consensus 140 ~~~~w~~~~~~~~~~~~~~lG~~-~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~ 218 (995)
T PTZ00419 140 KVWEWKDKHGNNICNQLRRLGSS-LDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE 218 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCce-eeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc
Confidence 578999999999999999997 342 22332 68899999999999999999999999999886210
Q ss_pred ------------c------cc-------ccCcc---c--------------------cccc----CCC------------
Q 008191 225 ------------Y------GQ-------LSGRK---L--------------------EDNR----AGE------------ 240 (574)
Q Consensus 225 ------------y------g~-------Ls~~~---~--------------------~~~~----~g~------------ 240 (574)
| |. +.+.. + ++-+ .|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~i 298 (995)
T PTZ00419 219 EIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKI 298 (995)
T ss_pred cccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEE
Confidence 1 21 00000 0 0000 000
Q ss_pred -------ccccC--------CCccCccchhhccccc--------------------------------------------
Q 008191 241 -------RVAVD--------SRKKNPADFALWKSAK-------------------------------------------- 261 (574)
Q Consensus 241 -------~v~~~--------~~k~~~~Df~lwk~~~-------------------------------------------- 261 (574)
.|+.+ ...+++.||..++...
T Consensus 299 pii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~ 378 (995)
T PTZ00419 299 PIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRD 378 (995)
T ss_pred EEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEe
Confidence 11100 0012334554432100
Q ss_pred ------------------------------------------CC-------------------CCcc----ccCCcCcCC
Q 008191 262 ------------------------------------------EG-------------------EPFW----ESPWGPGRP 276 (574)
Q Consensus 262 ------------------------------------------~g-------------------~~~w----~~~WG~g~P 276 (574)
.+ ...| -..||.+.|
T Consensus 379 ~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP 458 (995)
T PTZ00419 379 KVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIP 458 (995)
T ss_pred eEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceee
Confidence 00 0112 135999999
Q ss_pred CCccc-hh--------------------------------------------------H-HHHhhhC-----------CC
Q 008191 277 GWHIE-CS--------------------------------------------------A-MSAAYLG-----------HS 293 (574)
Q Consensus 277 gWhie-cs--------------------------------------------------a-m~~~~lG-----------~~ 293 (574)
.|+++ |. + +-...+| +|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P 538 (995)
T PTZ00419 459 AYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFP 538 (995)
T ss_pred EEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCC
Confidence 88642 10 0 0001234 26
Q ss_pred ceeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccccCceeehhhhhh----------------
Q 008191 294 FDIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME---------------- 355 (574)
Q Consensus 294 ~dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~---------------- 355 (574)
.|+++.|+|++|++....++++.++.++. +.++++ ||+|.. +|+|||||+||+|+|.++++
T Consensus 539 ~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~-HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~ 617 (995)
T PTZ00419 539 TSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFL-HAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNL 617 (995)
T ss_pred CcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhc-cceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcccc
Confidence 78999999999987777777777777664 467755 699997 89999999999999999999
Q ss_pred ---------------------ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Q 008191 356 ---------------------LYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA---- 409 (574)
Q Consensus 356 ---------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---- 409 (574)
+||+|++|||+++. +..+|++|+.+.+...++.+.+++|+++++...+......
T Consensus 618 ~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~ 697 (995)
T PTZ00419 618 PEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNST 697 (995)
T ss_pred chhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 89999999999986 7899999999999988888889999888765544322110
Q ss_pred -------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH--HHHHHHHHHhhhcch----h-hhhHHHHHH
Q 008191 410 -------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP--LKTINDLLHTRKGKK----Q-AMRLESLAA 475 (574)
Q Consensus 410 -------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~----~-~~~~~~l~~ 475 (574)
......+.+++..++++.+.+.++| ++|+++.|++.+++| ...+|.|++..+++. . ..+......
T Consensus 698 ~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~ 776 (995)
T PTZ00419 698 LFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDV 776 (995)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHH
Confidence 0112346889999999999999999 899999999999997 467899999877432 1 113334456
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+|+.++.+| +|+|+.++++|+.+.
T Consensus 777 L~~vL~~~l~LL~PfmPfitEElw~~L~ 804 (995)
T PTZ00419 777 LHTVLDIGLRLLHPMMPFITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 667778888888 899999999999985
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=370.20 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=165.6
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|+|++|+|++++|+.+++.++.++.+. ++++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 367999999999999999999888888764 554566889999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALS- 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~- 448 (574)
++.+|++|+++.+..+.+.+.++++++..+..... .......+++++..++++.+.+.++| ++|+++.|+..++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~ 683 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFY 683 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 99999999999999999999888887765432111 01123457899999999999999999 9999999998875
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+.+.+|.|++..+. .....+..++..++.+| +|+|+.++++|+.|+
T Consensus 684 ~l~~~~n~Yi~~~k~-------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~ 731 (897)
T PRK12300 684 ELLNDLRWYLRRVGE-------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcC
Confidence 777899999976542 22344556667777777 899999999999875
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=369.45 Aligned_cols=390 Identities=18% Similarity=0.216 Sum_probs=275.0
Q ss_pred CceeEEE--cCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 95 GKVGMYV--CGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 95 ~~v~~y~--cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
++.++|+ ..|.|+|. +||||+++++++|+++||+||+||+|.|++|+|.||.+|+.+|.+.|..|.++++++++.|+
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 4444554 45777796 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC-------------CCcccc------
Q 008191 172 QDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF-------------PEYGQL------ 228 (574)
Q Consensus 172 ~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~-------------~~yg~L------ 228 (574)
+.|++||+. .| .+.+++ +|...++.+|.+|+++|++|++...|+||+.|. ..||..
T Consensus 188 ~q~~~lG~s-~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~ 266 (963)
T PLN02563 188 SQLKSLGFS-YDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPM 266 (963)
T ss_pred HHHHHhCcE-eeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEec
Confidence 999999997 44 344554 799999999999999999999999999998762 122210
Q ss_pred -----------------------------------------------cC-------ccc--------------------c
Q 008191 229 -----------------------------------------------SG-------RKL--------------------E 234 (574)
Q Consensus 229 -----------------------------------------------s~-------~~~--------------------~ 234 (574)
.+ ..+ +
T Consensus 267 ~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~ 346 (963)
T PLN02563 267 RQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPE 346 (963)
T ss_pred ceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCC
Confidence 00 000 0
Q ss_pred c-----c---c-------------------------------CCCcc-----------------ccC--------CCccC
Q 008191 235 D-----N---R-------------------------------AGERV-----------------AVD--------SRKKN 250 (574)
Q Consensus 235 ~-----~---~-------------------------------~g~~v-----------------~~~--------~~k~~ 250 (574)
. + . .|..+ ..+ ...++
T Consensus 347 ~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd 426 (963)
T PLN02563 347 HPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHD 426 (963)
T ss_pred ChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCC
Confidence 0 0 0 00000 000 00011
Q ss_pred ccchhhccccc-----------------------CC-----------------------------------------CCc
Q 008191 251 PADFALWKSAK-----------------------EG-----------------------------------------EPF 266 (574)
Q Consensus 251 ~~Df~lwk~~~-----------------------~g-----------------------------------------~~~ 266 (574)
+.||..++... .| ...
T Consensus 427 ~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrD 506 (963)
T PLN02563 427 TRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRD 506 (963)
T ss_pred HHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCC
Confidence 23444333210 00 011
Q ss_pred cc----cCCcCcCCCCccc-hh------H------H--------------------------------------------
Q 008191 267 WE----SPWGPGRPGWHIE-CS------A------M-------------------------------------------- 285 (574)
Q Consensus 267 w~----~~WG~g~PgWhie-cs------a------m-------------------------------------------- 285 (574)
|. .-||.+.|-||++ |. . +
T Consensus 507 W~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw 586 (963)
T PLN02563 507 WLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQW 586 (963)
T ss_pred ceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCch
Confidence 21 2488888888753 32 0 0
Q ss_pred ------HHhhh----------------CCCceeeeccccccC-------ccchHHHHHHhhccCCCCceEEEEeeEEE--
Q 008191 286 ------SAAYL----------------GHSFDIHGGGMDLVF-------PHHENEIAQSCAACNNSHISYWIHNGFVT-- 334 (574)
Q Consensus 286 ------~~~~l----------------G~~~dih~~G~Dl~f-------pH~~~~~A~~~a~~~~~~~~~~~h~g~v~-- 334 (574)
...|. -.|+|+.++|.||.- |+|-.-..+....+..|+.++ +.+|||+
T Consensus 587 ~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~l-l~qGmVl~~ 665 (963)
T PLN02563 587 AGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCL-VNQGMILGE 665 (963)
T ss_pred hhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHH-hccceeecC
Confidence 00000 136889999999953 333222222222224577777 5579997
Q ss_pred --------eCCc---------------------------------------------ccccccCceeehhhhhhccChhh
Q 008191 335 --------IDSE---------------------------------------------KMSKSLGNFFTIRQVMELYHPLA 361 (574)
Q Consensus 335 --------~~G~---------------------------------------------KMSKS~Gn~i~~~d~l~~~~~d~ 361 (574)
.+|+ |||||+||+|+|.+++++||+|+
T Consensus 666 ~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADa 745 (963)
T PLN02563 666 VEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADS 745 (963)
T ss_pred ccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHH
Confidence 3455 99999999999999999999999
Q ss_pred HHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCCChhHHHHHHHHHHHHHHHHHccC
Q 008191 362 LRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAA--LKDSIPPDTVTSINKFHNDFLASMSDDL 438 (574)
Q Consensus 362 lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~am~dd~ 438 (574)
+|||++.. +..++++|+.+.+....+.+.++|+.+.........+.... .....+.+++..++++.+.+.++| ++|
T Consensus 746 LRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y 824 (963)
T PLN02563 746 LRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-EST 824 (963)
T ss_pred HHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcC
Confidence 99999986 88899999999999999999999987654311000010000 011346788999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 439 HTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 439 n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+++.|++.|++|+..++++- . ....++..++.+| +|+|+.+|++|+.|.
T Consensus 825 ~FntAi~~lmef~n~l~~~~-------~--------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg 874 (963)
T PLN02563 825 RFNTAISAMMEFTNAAYKWD-------K--------VPREAIEPFVLLLSPYAPHLAEELWFRLG 874 (963)
T ss_pred CHHHHHHHHHHHHHHHhCch-------H--------HHHHHHHHHHHHHHhhhhhHHHHHHHHcC
Confidence 99999999999998775421 0 1234566667777 899999999999884
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=360.61 Aligned_cols=209 Identities=17% Similarity=0.201 Sum_probs=169.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
|.|+..-|.|++|+|....+.++.+++++ |+.++.+ ||||+. +|+|||||+||+|+|.+++++||+|+||||+++.
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~Vlv-HG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC-NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEE-ccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcC
Confidence 57888999999999999999999999887 5577755 699997 9999999999999999999999999999999986
Q ss_pred CC-CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh-------------hhcCCCCChhHHHHHHHHHHHHHHHH
Q 008191 370 HY-RSPINYSVVQLESA-SERIFYIYQTLHDCEKALSLLDA-------------AALKDSIPPDTVTSINKFHNDFLASM 434 (574)
Q Consensus 370 ~~-~~~~~fs~~~l~~a-~~~l~~l~~~l~~~~~~l~~~~~-------------~~~~~~~~~~l~~~l~~~~~~~~~am 434 (574)
.. .++++|+++.+.+. .+.+.++|+..+.+...+..+.. .......++|++..++++.+.+.++|
T Consensus 752 ~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m 831 (1205)
T PTZ00427 752 AVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM 831 (1205)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 79999999999765 45577888887766543332110 01123357899999999999999999
Q ss_pred HccCCHHHHHHHHHHHHH-HHHHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 435 SDDLHTTVVLAALSDPLK-TINDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 435 ~dd~n~~~al~~l~~l~~-~~N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
++|+++.|+..|++|+. .+|.|++..+. + ....+..++..+..+|..++.+| +|+|+.++++|+.|..
T Consensus 832 -e~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 832 -KAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred -HccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 99999999999999997 56889886552 1 12233455667778888888888 8999999999999853
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=335.31 Aligned_cols=404 Identities=21% Similarity=0.263 Sum_probs=287.4
Q ss_pred CCccccccCCC-Cc-eeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCCh
Q 008191 84 RKRELVKPKVE-GK-VGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDP 159 (574)
Q Consensus 84 ~~~~~f~p~~~-~~-v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~ 159 (574)
.+...|++..+ ++ -++|++-|-|| |.+|+||.|+|+++|+++||.||+||+|.|.+|+|-.|.++++.|.+.|.+|
T Consensus 19 ~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P 98 (814)
T COG0495 19 EEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDP 98 (814)
T ss_pred HhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCCh
Confidence 34566776443 33 38888887777 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc--cccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC------------
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVE--PRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP------------ 223 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~--~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~------------ 223 (574)
..+++.+++.|+++|++||.+ .|+- ..++ +|...++.+|.+|.++|++|.++..|.||+.+..
T Consensus 99 ~~wt~~ni~~~k~qlk~lG~s-iDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~ 177 (814)
T COG0495 99 AKWTYYNIAYMKKQLKSLGFS-IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGC 177 (814)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCc
Confidence 999999999999999999997 4432 1112 7999999999999999999999999999987521
Q ss_pred -Cccc---------------------------ccCcccc-------------------cccCCC----------------
Q 008191 224 -EYGQ---------------------------LSGRKLE-------------------DNRAGE---------------- 240 (574)
Q Consensus 224 -~yg~---------------------------Ls~~~~~-------------------~~~~g~---------------- 240 (574)
.||. |.+.-++ ....|.
T Consensus 178 ~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~ 257 (814)
T COG0495 178 WRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTL 257 (814)
T ss_pred ccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccc
Confidence 2221 0000000 000000
Q ss_pred ---c----------------------------------c-------------ccCCCccCc-------------------
Q 008191 241 ---R----------------------------------V-------------AVDSRKKNP------------------- 251 (574)
Q Consensus 241 ---~----------------------------------v-------------~~~~~k~~~------------------- 251 (574)
+ + ....+..||
T Consensus 258 ~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~yg 337 (814)
T COG0495 258 FGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYG 337 (814)
T ss_pred cCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCccccccc
Confidence 0 0 000000000
Q ss_pred ------------cchhhcccc---------cC-----------------------------------------C------
Q 008191 252 ------------ADFALWKSA---------KE-----------------------------------------G------ 263 (574)
Q Consensus 252 ------------~Df~lwk~~---------~~-----------------------------------------g------ 263 (574)
+||...+.. .. |
T Consensus 338 tgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y 417 (814)
T COG0495 338 TGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNY 417 (814)
T ss_pred ccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEec
Confidence 122211100 00 0
Q ss_pred -CCcc-c---cCCcCcCC--------------------------------------CCcc-chh---------HHH----
Q 008191 264 -EPFW-E---SPWGPGRP--------------------------------------GWHI-ECS---------AMS---- 286 (574)
Q Consensus 264 -~~~w-~---~~WG~g~P--------------------------------------gWhi-ecs---------am~---- 286 (574)
...| . ..||.+.| .|-+ .|+ .|.
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcc
Confidence 0122 0 12333332 1422 341 111
Q ss_pred -----Hhh-----hC------------CCceeeeccccccCccchHHHHHHhhccC-------CCCceEEEEeeEEEe-C
Q 008191 287 -----AAY-----LG------------HSFDIHGGGMDLVFPHHENEIAQSCAACN-------NSHISYWIHNGFVTI-D 336 (574)
Q Consensus 287 -----~~~-----lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-------~~~~~~~~h~g~v~~-~ 336 (574)
.+| .| .|+|+.+||+||+--|..+.+-...++.. +|+.+. +.+|||+. +
T Consensus 498 sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~ 576 (814)
T COG0495 498 SSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEE 576 (814)
T ss_pred cccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecC
Confidence 011 21 27899999999999999999998888863 355556 77999999 7
Q ss_pred CcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 008191 337 SEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSI 415 (574)
Q Consensus 337 G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~ 415 (574)
|+|||||+||+|+|++++++||+|++|+|++.. +..++++|+++.++.+.+.|.|+++.+.......... ....
T Consensus 577 g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~ 651 (814)
T COG0495 577 GEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKE 651 (814)
T ss_pred CCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccch
Confidence 999999999999999999999999999999996 8999999999999999999999998776554321000 0111
Q ss_pred C-hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-cccccc
Q 008191 416 P-PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTG 493 (574)
Q Consensus 416 ~-~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~ 493 (574)
. ..+...++++.+.+.+.++..+.+..|++.+++|++.+.+|....... ..+ +...+..+..+| +|.|+.
T Consensus 652 ~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~~-----~~~---l~~~l~~~v~lLaP~aPH~ 723 (814)
T COG0495 652 QGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGD-----RKV---LREALETWVRLLAPFAPHI 723 (814)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----HHH---HHHHHHHHHHHhcccccHH
Confidence 1 344556777888888888333899999999999999999887654321 122 334555566666 899999
Q ss_pred HHHHHHHHH
Q 008191 494 YSEVLLQLR 502 (574)
Q Consensus 494 ~~~i~~~l~ 502 (574)
+||+|+.+.
T Consensus 724 aEElW~~lg 732 (814)
T COG0495 724 AEELWEELG 732 (814)
T ss_pred HHHHHHHhc
Confidence 999999886
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.84 Aligned_cols=367 Identities=19% Similarity=0.171 Sum_probs=269.4
Q ss_pred ccCCCccccccCC--CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH---HH-
Q 008191 81 TMSRKRELVKPKV--EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA---NE- 154 (574)
Q Consensus 81 tl~~~~~~f~p~~--~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A---~~- 154 (574)
+..+.++.|-+.. +.+|.++.|||||+|++||||+|+++++|+|+|+|++.||+|....+++|+|.++-.-+ .+
T Consensus 96 ~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~ 175 (566)
T TIGR00456 96 KILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKF 175 (566)
T ss_pred HHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHh
Confidence 3344556665433 34899999999999999999999999999999999999999999999999986542211 00
Q ss_pred ---------------------------------------------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008191 155 ---------------------------------------------LGED-----PISLSRRYCEEFHQDMVDLHCLPPSV 184 (574)
Q Consensus 155 ---------------------------------------------~g~~-----~~e~a~~~~~~f~~~l~~L~I~~~d~ 184 (574)
.|.+ ++.+++...+.|+++|++|||. +|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~-fD~ 254 (566)
T TIGR00456 176 GNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIH-FDS 254 (566)
T ss_pred CCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eee
Confidence 0111 2456677889999999999996 676
Q ss_pred cccc--cccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-cCcccccccCCCccccCCCccCccchh--hccc
Q 008191 185 EPRV--SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL-SGRKLEDNRAGERVAVDSRKKNPADFA--LWKS 259 (574)
Q Consensus 185 ~~r~--s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L-s~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~ 259 (574)
+... +.+.+.+.+++++|.++|++|+. |.+|++++. +|.. ..+.+. ..+|+..... .|.+ +||.
T Consensus 255 ~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d~~~~~vl~-ksDGt~~Y~t------~DiA~~~~k~ 323 (566)
T TIGR00456 255 FVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGDKDKDRVLQ-KSDGTYLYLT------RDIAYHLDKL 323 (566)
T ss_pred eeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccCCCCCeEEE-ECCCCceech------hhHHHHHHHH
Confidence 6533 34556788999999999999987 999987643 3311 011111 1233332211 1332 2221
Q ss_pred ccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 260 AKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 260 ~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
. -|....|.+.|.|+. .|...-.+.+++++..++.++ .|++|.+++|.|
T Consensus 324 ~-----------------------------~~~d~iI~V~g~~q~-~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~k 372 (566)
T TIGR00456 324 E-----------------------------RGFDKMIYVWGSDHH-LHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGS 372 (566)
T ss_pred h-----------------------------cCCCEEEEEecCcHH-HHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCC
Confidence 1 144567888999954 122223356666665555555 788999999999
Q ss_pred cccccCceeehh-----------------------hhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHH
Q 008191 340 MSKSLGNFFTIR-----------------------QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQT 395 (574)
Q Consensus 340 MSKS~Gn~i~~~-----------------------d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~ 395 (574)
||||+||+|+++ ++++.+|.|++||++|+....++++|+++.+.+.....+ ++.++
T Consensus 373 mSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa 452 (566)
T TIGR00456 373 MKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYA 452 (566)
T ss_pred CCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHH
Confidence 999999999998 677778999999999999889999999998877654333 67777
Q ss_pred HHHHHHHHhhhhhhhc---------CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 008191 396 LHDCEKALSLLDAAAL---------KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-- 464 (574)
Q Consensus 396 l~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-- 464 (574)
..|+.+.+.++..... .++.+..++..+.++++.+.++| ++++++.++.+++++++.+|+|++.++..
T Consensus 453 ~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l~~La~~~N~yy~~~~Vl~~ 531 (566)
T TIGR00456 453 HARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYLYELASLFSSFYKACPVLDA 531 (566)
T ss_pred HHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 7777777766421110 01223567788889999999999 99999999999999999999999877632
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 465 ----KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 465 ----~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
....|+.++.++..+|...|.+|||.+
T Consensus 532 ~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 562 (566)
T TIGR00456 532 ENENLAAARLALLKATRQTLKNGLQLLGIEP 562 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 124788999999999999999999976
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.52 Aligned_cols=408 Identities=21% Similarity=0.249 Sum_probs=296.0
Q ss_pred CceeEEEcC-CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CC---------------
Q 008191 95 GKVGMYVCG-VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GE--------------- 157 (574)
Q Consensus 95 ~~v~~y~cg-pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~--------------- 157 (574)
++.-++.-| |..+|.+|||||-+-++-|++.||..|+||+|.++.|+|.||.+|+.++++. |.
T Consensus 48 ~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~ 127 (933)
T COG0060 48 KPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFRE 127 (933)
T ss_pred CCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHH
Confidence 344455555 5555999999999999999999999999999999999999999999777653 41
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc
Q 008191 158 DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ 227 (574)
Q Consensus 158 ~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~ 227 (574)
.++++|.+|.+..++++++||+...---|..| ++++.+..++.++.+||++|++...||||+.|.. .|+.
T Consensus 128 ~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d 207 (933)
T COG0060 128 KCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD 207 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc
Confidence 24788899999999999999997433345555 6889999999999999999999999999998732 2211
Q ss_pred -----------cc------C------------------------------------------------------------
Q 008191 228 -----------LS------G------------------------------------------------------------ 230 (574)
Q Consensus 228 -----------Ls------~------------------------------------------------------------ 230 (574)
+. +
T Consensus 208 ~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~ 287 (933)
T COG0060 208 VKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLE 287 (933)
T ss_pred cCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeE
Confidence 00 0
Q ss_pred ----cccccc-----------------cCCCccccCC--------CccCccchhhcc-----------------------
Q 008191 231 ----RKLEDN-----------------RAGERVAVDS--------RKKNPADFALWK----------------------- 258 (574)
Q Consensus 231 ----~~~~~~-----------------~~g~~v~~~~--------~k~~~~Df~lwk----------------------- 258 (574)
..++.+ ..|+.|..+. ......||.+++
T Consensus 288 ~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~ 367 (933)
T COG0060 288 TFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPK 367 (933)
T ss_pred EeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchh
Confidence 000000 0000000000 000001222221
Q ss_pred --------------------------------------cccC--------------------------------------
Q 008191 259 --------------------------------------SAKE-------------------------------------- 262 (574)
Q Consensus 259 --------------------------------------~~~~-------------------------------------- 262 (574)
..+|
T Consensus 368 ~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R~ 447 (933)
T COG0060 368 YEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRF 447 (933)
T ss_pred hCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHHH
Confidence 1000
Q ss_pred -----CCCccc----cCCcCcCCCCcc-chhH----------HHH-----------------hhh------C--------
Q 008191 263 -----GEPFWE----SPWGPGRPGWHI-ECSA----------MSA-----------------AYL------G-------- 291 (574)
Q Consensus 263 -----g~~~w~----~~WG~g~PgWhi-ecsa----------m~~-----------------~~l------G-------- 291 (574)
+.+.|. .-||.+.|-|.. +|.. ++. +.+ |
T Consensus 448 ~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~D 527 (933)
T COG0060 448 GNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPD 527 (933)
T ss_pred HHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCc
Confidence 112232 349999998854 3310 000 000 0
Q ss_pred -----------------------CCc---eeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccc
Q 008191 292 -----------------------HSF---DIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKS 343 (574)
Q Consensus 292 -----------------------~~~---dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS 343 (574)
.+. |+..-|.|+.+-+.---...+.|+.+++ +.++ +.|||++. +|+|||||
T Consensus 528 vlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~v-ltHGfvlDe~GrKMSKS 606 (933)
T COG0060 528 VLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNV-LTHGFVLDEKGRKMSKS 606 (933)
T ss_pred ceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHH-hhcccEECCCCCCcccc
Confidence 122 6777788887776666677778888874 4555 55799987 79999999
Q ss_pred cCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCCCh
Q 008191 344 LGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAA------LKDSIPP 417 (574)
Q Consensus 344 ~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~------~~~~~~~ 417 (574)
+||+|+|.|++++||+|+||+|++++.|..++.||++.+++....+.+|+|+++.+..++..+.... ....+|+
T Consensus 607 lGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Dr 686 (933)
T COG0060 607 LGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDR 686 (933)
T ss_pred CCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHH
Confidence 9999999999999999999999999999999999999999999999999999999988877654221 2335689
Q ss_pred hHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH-HHH-HHHHHhhhc------chhhhhHHHHHHHHHHHHHHHhhh-c
Q 008191 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL-KTI-NDLLHTRKG------KKQAMRLESLAALEKTIRNVLTVL-G 488 (574)
Q Consensus 418 ~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~-~~~-N~~~~~~~~------~~~~~~~~~l~~~~~~l~~~l~iL-G 488 (574)
+++.+++.+.+.+.++| ++|++++++..|++|+ ..+ |.|++..+. .....|.+....+..+|..+..+| +
T Consensus 687 wil~rl~~l~~~v~eay-e~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAP 765 (933)
T COG0060 687 WILSRLNSLVKEVREAY-ENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAP 765 (933)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999 9999999999999999 555 556665551 223455666566667777777777 8
Q ss_pred cccccHHHHHHHHHHH
Q 008191 489 LMSTGYSEVLLQLREK 504 (574)
Q Consensus 489 i~p~~~~~i~~~l~~~ 504 (574)
|+|+++|++|+.+...
T Consensus 766 ilPftaEeiw~~l~~~ 781 (933)
T COG0060 766 ILPFTAEEIWQNLPGE 781 (933)
T ss_pred cchhhHHHHHHhCccC
Confidence 9999999999988543
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=296.47 Aligned_cols=413 Identities=16% Similarity=0.152 Sum_probs=300.0
Q ss_pred cccccCCCCceeEEEcCCCCC--CcCcchhh-HHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHH
Q 008191 87 ELVKPKVEGKVGMYVCGVTPY--DLSHIGHA-RVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLS 163 (574)
Q Consensus 87 ~~f~p~~~~~v~~y~cgpt~y--g~~HiGHa-r~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a 163 (574)
.+.-|. +++-.+.++..-|| ..+|+||. ...+.|||++||.+.+|+...|++|+|++|.+++.+|.++|.+|++++
T Consensus 5 ~~ilp~-~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 5 DPILPA-PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCcccC-CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 344443 35556666665555 99999995 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCc----
Q 008191 164 RRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEY---- 225 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~y---- 225 (574)
++|...+...++-++|. .|.|-|+| .+-+..+.+|.+|.++|+.-+..-.+.||..| |+.|
T Consensus 84 dKyh~ihk~vy~Wf~Id-fD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ 162 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKID-FDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDD 162 (567)
T ss_pred HhcchhHHHHHHhhccc-ccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcc
Confidence 99999999999999996 89999987 56788899999999999988877778888654 4433
Q ss_pred ---------ccccCc----ccccccC--CCcc------ccCCC----------ccCc--cch--------hhccc--ccC
Q 008191 226 ---------GQLSGR----KLEDNRA--GERV------AVDSR----------KKNP--ADF--------ALWKS--AKE 262 (574)
Q Consensus 226 ---------g~Ls~~----~~~~~~~--g~~v------~~~~~----------k~~~--~Df--------~lwk~--~~~ 262 (574)
|++-+. +..++.+ +-.+ .++-. +++. .|+ .-|-+ -+|
T Consensus 163 ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~p 242 (567)
T KOG1247|consen 163 ARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKP 242 (567)
T ss_pred ccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccc
Confidence 332211 0011111 1100 00000 0000 010 01211 123
Q ss_pred CCCccccCCcCcCCC----------CccchhHHHH----------hhhCCCc---eeeeccccccCccchHHHHHHhhcc
Q 008191 263 GEPFWESPWGPGRPG----------WHIECSAMSA----------AYLGHSF---DIHGGGMDLVFPHHENEIAQSCAAC 319 (574)
Q Consensus 263 g~~~w~~~WG~g~Pg----------Whiecsam~~----------~~lG~~~---dih~~G~Dl~fpH~~~~~A~~~a~~ 319 (574)
..+++|..||.++|= |+.+...|.+ ++|..|- -.++.|+|++.||.+..|+...+.+
T Consensus 243 RCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~ 322 (567)
T KOG1247|consen 243 RCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTE 322 (567)
T ss_pred cccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCC
Confidence 346778999999992 8876543321 2333333 3789999999999999999888876
Q ss_pred CC-CCceEEEEeeEEEeCCcccccccCceeehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHH
Q 008191 320 NN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQ 394 (574)
Q Consensus 320 ~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~ 394 (574)
.+ +..+.....++++.+..|+|||+|..|-..++.+ ..+++..|||||+. |..+|..|||+.+....|. +.+|-|
T Consensus 323 en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGN 402 (567)
T KOG1247|consen 323 ENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGN 402 (567)
T ss_pred CCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHH
Confidence 54 5566667789999999999999999999888876 58999999999997 8899999999999887763 445556
Q ss_pred HHHHHHHHHhhhhhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h
Q 008191 395 TLHDCEKALSLLDAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q 466 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~ 466 (574)
+++++..++.....+ -.....+..+++.++++.....++| +......|+..++++.+..|+|++.++..+ .
T Consensus 403 FvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~ 481 (567)
T KOG1247|consen 403 FVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKTAMEISRRGNQYLQENTDNKLYEES 481 (567)
T ss_pred HHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhc
Confidence 665555554432111 1122346788999999999999999 999999999999999999999999875211 1
Q ss_pred hhhHHHHH-HHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 467 AMRLESLA-ALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 467 ~~~~~~l~-~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+...+- .....+..+..+| ++||..+.+|..++.
T Consensus 482 r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqln 519 (567)
T KOG1247|consen 482 RQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLN 519 (567)
T ss_pred ccccceeeehhhHHHHHHHHHhccccccchHHHHHHhC
Confidence 12222222 2233333344444 999999999988864
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=325.80 Aligned_cols=201 Identities=19% Similarity=0.150 Sum_probs=151.2
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|++..|+||+++|..+.+.++.++.++ ||.+.+++||||+.+|+|||||+||+|+|.|++++||+|++|||++..
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 478999999999999999999888888765 666656778999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL---LDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
++.++.+|+++.+..+...+.++...+ ...+.. ..........|++++..++.+...+.++| ++++++.|++.
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~~~~~---~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKEIAWM---EEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 888999999998876665554433322 222111 00111123457899999999999999999 99999999998
Q ss_pred H-HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 447 L-SDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 447 l-~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
. ++|......|...... . . .....+..+|..++.+| +|+|+.+|++|+.+
T Consensus 826 ~~Yel~~~k~~yr~~~~~-~-~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCGS-G-G---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred HHHHHHHhHHHHhhcccc-c-h---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 4 3444443333221110 0 0 11234556677777787 89999999999987
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=307.33 Aligned_cols=356 Identities=16% Similarity=0.130 Sum_probs=267.6
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH---HHcCC-------------
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA---NELGE------------- 157 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A---~~~g~------------- 157 (574)
+++|.+..++|+|.|++||||+|+.+++|+|+|.|+..||+|....+++|+|.++-.-+ .+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 56899999999999999999999999999999999999999999999999997653211 11110
Q ss_pred ------------------------------C------hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHH
Q 008191 158 ------------------------------D------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQ 201 (574)
Q Consensus 158 ------------------------------~------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~ 201 (574)
+ ++.+++...+.|.++|++|||. +|.+...+.|.+.+.+++++
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~-fD~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVE-FTNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceeecchHhhhhhHHHHHHH
Confidence 1 3455677788999999999997 67777777888888999999
Q ss_pred HHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcCCCCc
Q 008191 202 ILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGRPGWH 279 (574)
Q Consensus 202 L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~PgWh 279 (574)
|.++|++|+.+|.+|++.+. +|. .+. +-.-.+|+..... .|.+ .||..
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-~~~-vl~ksDGt~~Y~t------~DiA~~~~k~~------------------- 320 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-PPC-LIRKSDGATIYAT------RDLTAALYRQN------------------- 320 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-Cce-EEEeCCCccccch------hHHHHHHHHhh-------------------
Confidence 99999999999999987643 331 111 1111234433221 1332 23321
Q ss_pred cchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceE-EEEeeEEEeCCcccccccCceeehhhhhhc--
Q 008191 280 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISY-WIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-- 356 (574)
Q Consensus 280 iecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~-~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-- 356 (574)
.+|....|.+.|.|+. .|.-.-.+.+.+++..+..++ .+..|+|..+|+||||++||+|+++|++++
T Consensus 321 ---------~~~~d~~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~ 390 (562)
T PRK12451 321 ---------TFGFDKALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAI 390 (562)
T ss_pred ---------ccCCCEEEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHH
Confidence 1345667889999954 122222245555553321111 133577888999999999999999999996
Q ss_pred -----------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh-h-
Q 008191 357 -----------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSLLDAA-A- 410 (574)
Q Consensus 357 -----------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~~~~~-~- 410 (574)
.+.+++||++|+....++++|+++.+.+....-+ +++++..|+.+++++.... .
T Consensus 391 ~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~ 470 (562)
T PRK12451 391 ELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFET 470 (562)
T ss_pred HHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCccc
Confidence 6789999999999999999999999877764322 7788888888888775210 0
Q ss_pred ----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc----hhhhhHHHHHHHHHHHHH
Q 008191 411 ----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK----KQAMRLESLAALEKTIRN 482 (574)
Q Consensus 411 ----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~----~~~~~~~~l~~~~~~l~~ 482 (574)
..++.+..++..+.++.+.+.++| ++++++.++.+++++++.+|+|++..+.- ....|+.++.++..+|..
T Consensus 471 ~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~ 549 (562)
T PRK12451 471 CTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYVLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVLKE 549 (562)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 012334667888999999999999 99999999999999999999999876632 235788999999999999
Q ss_pred HHhhhcccc
Q 008191 483 VLTVLGLMS 491 (574)
Q Consensus 483 ~l~iLGi~p 491 (574)
.|.+|||.+
T Consensus 550 gL~LLGI~~ 558 (562)
T PRK12451 550 GLRLLGVEA 558 (562)
T ss_pred HHHhcCCCc
Confidence 999999976
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=303.92 Aligned_cols=360 Identities=20% Similarity=0.186 Sum_probs=271.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH-------H-----------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN-------E----------- 154 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~-------~----------- 154 (574)
.+.+|.+..++|+|.||+||||+|+.|++|+|+|.|++.||+|....+++|+|.+|-.-+. +
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 3569999999999999999999999999999999999999999999999999976532110 0
Q ss_pred ---------------cCCC--------------------hHHHHHHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHH
Q 008191 155 ---------------LGED--------------------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIID 197 (574)
Q Consensus 155 ---------------~g~~--------------------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~ 197 (574)
.+.+ |+.+++.....|++++++|||. .|.+.-.+ .+-..+.+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~-fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVK-FDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcc-cceeeccchhhhcccHHH
Confidence 0100 1126777888999999999996 67775444 34456889
Q ss_pred HHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcC
Q 008191 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGR 275 (574)
Q Consensus 198 ~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~ 275 (574)
+++.|.++|++|+.+|..+.+..++..+|...++.+.. ++|+..... .|.+ +||..
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~K-SDGt~lY~t------~DIAy~~~K~~--------------- 331 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQK-SDGTYLYFT------RDIAYHLYKFE--------------- 331 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEE-cCCCeeeeh------hHHHHHHHHHh---------------
Confidence 99999999999999999988877665556433332221 234433221 1332 22210
Q ss_pred CCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe---CCcccccccCceeehhh
Q 008191 276 PGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI---DSEKMSKSLGNFFTIRQ 352 (574)
Q Consensus 276 PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~~d 352 (574)
.|....|.+.|.|+.- |....-+.+.+++..+...+.+|.++-++ +|.||||+.|++|+++|
T Consensus 332 --------------~~~d~~IyV~gadq~~-~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~d 396 (577)
T COG0018 332 --------------RGFDKLIYVLGADQHG-HFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDD 396 (577)
T ss_pred --------------cCCCEEEEEeCCcchh-HHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHH
Confidence 4566779999999541 11111233334444443346677777555 46799999999999999
Q ss_pred hhhccC----------------------hhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 008191 353 VMELYH----------------------PLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALSLLDAA 409 (574)
Q Consensus 353 ~l~~~~----------------------~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~~~~~~ 409 (574)
+++..+ .+++||++++.+..+++.|+|+.+.+..++ .-+++++..|+.+++.+....
T Consensus 397 llde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~ 476 (577)
T COG0018 397 LLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED 476 (577)
T ss_pred HHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc
Confidence 999888 999999999999999999999999998874 337888888888888765311
Q ss_pred h----------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhc----c--hhhhhHHHH
Q 008191 410 A----------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKG----K--KQAMRLESL 473 (574)
Q Consensus 410 ~----------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~----~--~~~~~~~~l 473 (574)
. .....+.+|+..+.+++..+.+|. +++.++....+|++|+..+|+||+.++. . ....|+.++
T Consensus 477 ~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~ 555 (577)
T COG0018 477 ELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARLALV 555 (577)
T ss_pred ccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHH
Confidence 0 111224678889999999999999 9999999999999999999999999872 1 235789999
Q ss_pred HHHHHHHHHHHhhhcccc
Q 008191 474 AALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p 491 (574)
.++..+|.+.|.+|||.+
T Consensus 556 ~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 556 KATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999999975
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=289.96 Aligned_cols=275 Identities=17% Similarity=0.212 Sum_probs=189.6
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc------------------HHHHHHHHHcCCC
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD------------------DKIIARANELGED 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g------------------~kI~~~A~~~g~~ 158 (574)
.-+..||++|||.+||||+|+++.+|+++|++|++|++|.|++++|||| .++...+...|..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4577889999999999999999999999999999999999999999994 4555555666666
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccH--HHHHHHHHHHHHCCceeee--------cCceeecCC-CCCCccc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM--PHIIDMITQILDNGFAYRV--------DGDVYFSVD-KFPEYGQ 227 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~--~~i~~~i~~L~~kG~aY~~--------~~~v~f~~~-~~~~yg~ 227 (574)
+ +++++|.+.|.+.|+.|||. ++++.++..+. .....+...|.+++.|.+. ....|+... -|++||+
T Consensus 100 ~-~~~d~~~~~f~~~l~~lgi~-~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~ 177 (353)
T cd00674 100 E-SYAEHFERPFEESLEKLGIE-VEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGK 177 (353)
T ss_pred H-HHHHHHHHHHHHHHHHcCCe-eeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCc
Confidence 6 99999999999999999997 67554443332 3445666777777776431 235566554 3889997
Q ss_pred ccCccccccc-CCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeeccccccC
Q 008191 228 LSGRKLEDNR-AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGGMDLVF 305 (574)
Q Consensus 228 Ls~~~~~~~~-~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G~Dl~f 305 (574)
+. ..+.+.. +...|.......+. -+-.-..|. .+.+|-+.+|. |.+ + .+|+.++|+||.-
T Consensus 178 ~~-~~v~~~d~~~~~v~y~c~cG~~----g~~~~~~g~--~KL~Wr~dW~~rW~~---------l--~Vd~E~~GkDh~~ 239 (353)
T cd00674 178 DT-TTVEAYDAKAGTVTYKCECGHE----ETVDIRTGR--GKLTWRVDWPMRWAI---------L--GVDFEPFGKDHAS 239 (353)
T ss_pred ce-eEEEEEeCCCCeEEEEcCCCCE----EEEeecCCC--cccCCCCCchhhhhh---------c--CCCEEeeCccccc
Confidence 75 2222111 11122221111110 000000111 14566666665 533 4 4789999999875
Q ss_pred ccchHHH--HHHh-hccCCCCceEEEEeeEEEeCCc-ccccccCceeehhhhhhccChhhHHHHhhccC-CCCCCCCCHH
Q 008191 306 PHHENEI--AQSC-AACNNSHISYWIHNGFVTIDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGTH-YRSPINYSVV 380 (574)
Q Consensus 306 pH~~~~~--A~~~-a~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~-~~~~~~fs~~ 380 (574)
+...... +++. +++..+|.. +.+|||+++|. |||||+||+|+++|+++.+++|++|||+++.+ ..++++|+++
T Consensus 240 ~ggs~~~~~~i~~~ilg~~~P~~--~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 240 AGGSYDTGKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred cccHHHHHHHHHHHHhCCCCCeE--EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChh
Confidence 5222222 3343 566666644 45699999876 99999999999999999999999999999987 8899999985
Q ss_pred HHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQ 394 (574)
Q Consensus 381 ~l~~a~~~l~~l~~ 394 (574)
+......+.++.+
T Consensus 318 -~~~~~dey~r~~~ 330 (353)
T cd00674 318 -ILRLYDEYDRLER 330 (353)
T ss_pred -HHHHHHHHHHHHH
Confidence 4444444444433
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=282.99 Aligned_cols=407 Identities=20% Similarity=0.258 Sum_probs=286.1
Q ss_pred cCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHH----HHHHHcC-C--------
Q 008191 91 PKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKII----ARANELG-E-------- 157 (574)
Q Consensus 91 p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~----~~A~~~g-~-------- 157 (574)
|..++...|+.++|+|.|.+|||||-+..+-|+++||.||.||.|.++-|+|..|--+. +.-.+.| +
T Consensus 71 ~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe 150 (995)
T KOG0432|consen 71 PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGRE 150 (995)
T ss_pred CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHH
Confidence 33456778999999999999999999999999999999999999999999999984322 2222222 2
Q ss_pred ----ChHHHHHHHHHHHHHHHHhcCCCCCCCcccc--c---ccHHHHHHHHHHHHHCCceeeecCceeecCCCC------
Q 008191 158 ----DPISLSRRYCEEFHQDMVDLHCLPPSVEPRV--S---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------ 222 (574)
Q Consensus 158 ----~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~--s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------ 222 (574)
..+++-++|...+.+++++||.+ .|+ .|. | .--..+.+.|-+|.+.|+||...+-|.+|+.-.
T Consensus 151 ~F~~~vw~Wk~e~g~~I~~Qlk~lGas-~DW-~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdi 228 (995)
T KOG0432|consen 151 EFLKEVWEWKEEYGGRIYNQLKRLGAS-LDW-DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDI 228 (995)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhcCc-ccc-cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhh
Confidence 24778889999999999999996 332 232 2 345688899999999999999999888885410
Q ss_pred ---------------CCc------cccc----------------Ccccc-------------------------------
Q 008191 223 ---------------PEY------GQLS----------------GRKLE------------------------------- 234 (574)
Q Consensus 223 ---------------~~y------g~Ls----------------~~~~~------------------------------- 234 (574)
+.| |.|- ...++
T Consensus 229 EVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~ 308 (995)
T KOG0432|consen 229 EVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTG 308 (995)
T ss_pred eecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCC
Confidence 111 1110 00000
Q ss_pred -----------cccCCCc-cccCCCccCccchhhccccc-----------------------------------------
Q 008191 235 -----------DNRAGER-VAVDSRKKNPADFALWKSAK----------------------------------------- 261 (574)
Q Consensus 235 -----------~~~~g~~-v~~~~~k~~~~Df~lwk~~~----------------------------------------- 261 (574)
++.-|+. |.+ ...++|.|+.++|+..
T Consensus 309 r~lPiI~D~~Vd~~fGTGaVKI-TPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL 387 (995)
T KOG0432|consen 309 RKLPIICDIAVDMEFGTGAVKI-TPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGL 387 (995)
T ss_pred CccceeecccccccccccceEe-cCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhh
Confidence 0001111 000 0123344554443210
Q ss_pred ----------------CCC-------Ccc-----------------------------------------c----cCCcC
Q 008191 262 ----------------EGE-------PFW-----------------------------------------E----SPWGP 273 (574)
Q Consensus 262 ----------------~g~-------~~w-----------------------------------------~----~~WG~ 273 (574)
.|+ |.| . .-||-
T Consensus 388 ~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGH 467 (995)
T KOG0432|consen 388 YVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGH 467 (995)
T ss_pred hhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhcc
Confidence 000 111 1 24787
Q ss_pred cCCCCccch-------h----------H---HHHh----------------------------hhCCC-----------c
Q 008191 274 GRPGWHIEC-------S----------A---MSAA----------------------------YLGHS-----------F 294 (574)
Q Consensus 274 g~PgWhiec-------s----------a---m~~~----------------------------~lG~~-----------~ 294 (574)
-.|-|++-. . | ...+ .+|+| .
T Consensus 468 rIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~ 547 (995)
T KOG0432|consen 468 RIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPL 547 (995)
T ss_pred ccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCc
Confidence 778766510 0 0 0000 13442 3
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh-----------------
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME----------------- 355 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~----------------- 355 (574)
.+-=.|.||+||+-...+.+..-++|+ ||.++++| ++|.. .|+|||||+||||+|.|+|+
T Consensus 548 sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLd 626 (995)
T KOG0432|consen 548 SLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLD 626 (995)
T ss_pred hhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCC
Confidence 355569999999776666666666776 78888775 99986 79999999999999999998
Q ss_pred -------------cc-------ChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhh----
Q 008191 356 -------------LY-------HPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLL-DAA---- 409 (574)
Q Consensus 356 -------------~~-------~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~-~~~---- 409 (574)
.| |.|+|||.|++- .-.+++++|...+...+...++|||+.+.+...+.+. ...
T Consensus 627 p~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~ 706 (995)
T KOG0432|consen 627 PREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTED 706 (995)
T ss_pred HHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Confidence 24 999999999885 8899999999999999999999999988876654432 110
Q ss_pred -hcCCC-CChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc--h--hhhhHHHHHHHHHHHH
Q 008191 410 -ALKDS-IPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK--K--QAMRLESLAALEKTIR 481 (574)
Q Consensus 410 -~~~~~-~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~--~--~~~~~~~l~~~~~~l~ 481 (574)
..... .+.|++..+....+++.+.| +.++++.|..++..|. ..+..|++..++. . ..........+..++.
T Consensus 707 ~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld 785 (995)
T KOG0432|consen 707 LSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLD 785 (995)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11111 67899999999999999999 9999999999999986 5678899887732 1 1223333455667778
Q ss_pred HHHhhh-ccccccHHHHHHHHH
Q 008191 482 NVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 482 ~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..|++| +|||+.++++||.+.
T Consensus 786 ~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 786 NGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHHHhcCcccccHHHHHHhcc
Confidence 888888 899999999999873
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=289.71 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=261.4
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH---H-cC-------C-----
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN---E-LG-------E----- 157 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~---~-~g-------~----- 157 (574)
+++|.+..++|+|.|++||||+|+.+++|+|+|+|+..||+|....+++|+|.+|-.-+. + .+ .
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 368999999999999999999999999999999999999999999999999976532221 1 01 0
Q ss_pred -------------------------------------ChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHH
Q 008191 158 -------------------------------------DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT 200 (574)
Q Consensus 158 -------------------------------------~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~ 200 (574)
-++.+++.....|.+.+++|||. .|. ...|.|.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~-fd~-~ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVE-LEE-KGESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe-eee-cCchhhhhhHHHHHH
Confidence 01245556667889999999997 565 355677778899999
Q ss_pred HHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcCCCC
Q 008191 201 QILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGRPGW 278 (574)
Q Consensus 201 ~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~PgW 278 (574)
.|.++|++|+.+|..|++.+.. +. . .+-.-++|+..... .|.+ +||..
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~~---~~--~-~vl~ksDGt~tY~t------~DIA~~~~k~~------------------ 323 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEGF---DI--P-LIVVKSDGGFNYAS------TDLAALWYRLN------------------ 323 (576)
T ss_pred HHHHCCCEEeeCCceEeeccCC---CC--c-eEEEECCCchhhHH------HHHHHHHHHHh------------------
Confidence 9999999999999999865322 10 0 01111234332211 1433 23321
Q ss_pred ccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCC-C----CceEEEEeeEEE-eCCcccccccCceeehhh
Q 008191 279 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-S----HISYWIHNGFVT-IDSEKMSKSLGNFFTIRQ 352 (574)
Q Consensus 279 hiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~----~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d 352 (574)
.+|....|.+.|.|+. .|.....+.+.+++.. . -..+ +..|+|+ .+|+||||+.||+|+++|
T Consensus 324 ----------~~~~d~~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h-~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 324 ----------EEKAEWIIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEH-VGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred ----------ccCCCEEEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEE-EeeccEECCCCCcccCCCCCeeEHHH
Confidence 1344566888899854 1222233556666533 2 1222 4468886 578899999999999999
Q ss_pred hhhc-----------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008191 353 VMEL-----------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKA 402 (574)
Q Consensus 353 ~l~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~ 402 (574)
++++ .+.+++||++|+.+..++++|+++.+.+....-+ +++++..|+.++
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 9983 4689999999999999999999999887765433 778888888888
Q ss_pred Hhhhhhhh----------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc---hhhhh
Q 008191 403 LSLLDAAA----------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK---KQAMR 469 (574)
Q Consensus 403 l~~~~~~~----------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~---~~~~~ 469 (574)
+.+..... ..++.+..|+..+..+++.+.++. +++.++..+.+|++|++.+|+||+.++.- ....|
T Consensus 472 lrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~~aR 550 (576)
T PLN02286 472 IRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETSR 550 (576)
T ss_pred HHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhcCccCCCCchhHH
Confidence 77653110 012234668889999999999998 99999999999999999999999877632 12578
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q 008191 470 LESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 470 ~~~l~~~~~~l~~~l~iLGi~p 491 (574)
+.++.++..+|...|.+|||.+
T Consensus 551 L~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 551 LLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999975
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=289.79 Aligned_cols=279 Identities=18% Similarity=0.173 Sum_probs=192.1
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccH--HH-------HHHHHHcCCC---------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD--KI-------IARANELGED--------- 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~--kI-------~~~A~~~g~~--------- 158 (574)
.-++.||++|+|.+||||+|+++.+|+++|+||.+|++|.+++++||||. || ...++..|++
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 47889999999999999999999999999999999999999999999984 55 2345556665
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCCCccccccc-H-HHHHHHHHHHHHCCceee--------ecCceeecCC-CCCCcc
Q 008191 159 -PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH-M-PHIIDMITQILDNGFAYR--------VDGDVYFSVD-KFPEYG 226 (574)
Q Consensus 159 -~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~-~-~~i~~~i~~L~~kG~aY~--------~~~~v~f~~~-~~~~yg 226 (574)
+++|+++|.+.|.+.++.+||. ++++.++..| . .....+...|.+++.+.+ .....|+... -|++||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~-~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg 182 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIE-YEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCG 182 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCc-eEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCC
Confidence 7999999999999999999996 6755443311 1 112222333333333321 1234566554 388999
Q ss_pred cccCccccccc-CCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeecccccc
Q 008191 227 QLSGRKLEDNR-AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGGMDLV 304 (574)
Q Consensus 227 ~Ls~~~~~~~~-~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G~Dl~ 304 (574)
++......+.. ...+|.......+. . +-.-..|. ...+|-+.+|. |. ++ .+|+.++|+||.
T Consensus 183 ~~~~~~~~~~d~~~~~v~y~~~cG~~--~--~~~~~~g~--~KL~Wr~dW~~rW~---------~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 183 KVLTTPVISYDAEAGTVTYDCECGHE--G--EVPVTGGH--GKLQWKVDWPMRWA---------AL--GVDFEPFGKDHA 245 (510)
T ss_pred ccceEEEEEEeCCCCEEEEEcCCCCE--E--EEecCCCC--cccCCCCCcHHHHH---------Hc--CCCEEeeCcccC
Confidence 97654332211 11122221111110 0 00000111 14556555554 42 34 478999999998
Q ss_pred CccchHHHHHHh-hccCCCCceEEEEeeEEEeC-CcccccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHH
Q 008191 305 FPHHENEIAQSC-AACNNSHISYWIHNGFVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQ 381 (574)
Q Consensus 305 fpH~~~~~A~~~-a~~~~~~~~~~~h~g~v~~~-G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~ 381 (574)
.+++.....++. +++.++|.. +|+||++++ |+|||||+||+|++.|+++.+++|++|||++. .++.++++|++
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~-- 321 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV-- 321 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--
Confidence 854444445555 666666643 678999997 99999999999999999999999999987775 59999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008191 382 LESASERIFYIYQTLH 397 (574)
Q Consensus 382 l~~a~~~l~~l~~~l~ 397 (574)
+..+.+.+.++.+.+.
T Consensus 322 l~~~~dey~rl~~~~~ 337 (510)
T PRK00750 322 IPKLVDEYDRFERKYF 337 (510)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777766553
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=248.77 Aligned_cols=207 Identities=21% Similarity=0.175 Sum_probs=160.4
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+|.+..++|||+|++||||+|++|++|+|+|+|++.||+|.+++++||+|+||+..|.+.+ .++++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999997764 499999999999999999
Q ss_pred hcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 176 DLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
+|||. +|.++++|++++.+++++++|.++|++|+.+|.+||+++++. .+ + |+.
T Consensus 80 ~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~---~~----------------------~-d~v 132 (212)
T cd00671 80 RLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFG---DD----------------------K-DRV 132 (212)
T ss_pred HhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhC---CC----------------------C-CeE
Confidence 99997 799999999999999999999999999999999999976541 11 1 343
Q ss_pred hcccccCCCCccccCCcCcCCCCccchhHHHH-hh-hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEE--ee
Q 008191 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSA-AY-LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIH--NG 331 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~-~~-lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h--~g 331 (574)
+.|+ .|.|.++..-.|++. +. .+.+..|.+.|.|+. .|.....+.+.+++..+..++ .| .|
T Consensus 133 l~rs-------------dG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~-~h~~~~ 197 (212)
T cd00671 133 LVRS-------------DGTYTYFTRDIAYHLDKFERGADKIIYVVGADHH-GHFKRLFAALELLGYDEAKKL-EHLLYG 197 (212)
T ss_pred EEEC-------------CCCccchHHHHHHHHHHHhcCCCEEEEEECCCHH-HHHHHHHHHHHHcCCCCCCCe-EEEEEE
Confidence 3332 133333321112211 11 345566889999965 344444566666665422222 34 38
Q ss_pred EEEeC-CcccccccC
Q 008191 332 FVTID-SEKMSKSLG 345 (574)
Q Consensus 332 ~v~~~-G~KMSKS~G 345 (574)
+|+.. |+||||+.|
T Consensus 198 ~v~~~~~~kmS~R~G 212 (212)
T cd00671 198 MVNLPKEGKMSTRAG 212 (212)
T ss_pred eEEcCCCCCCCCCCC
Confidence 88876 999999987
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=286.47 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=101.5
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CC----------------C
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GE----------------D 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~----------------~ 158 (574)
+..+...+|+++|.+||||++++++.|+++||.||+|++|.++.|+|.+|.+|+.++++. |. .
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~ 103 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREE 103 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhh
Confidence 445566678888999999999999999999999999999999999999999999988764 33 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCC
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK 221 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~ 221 (574)
++++++++.+.+.+++++||+...-..+..| .+...++..|.+|.++|++|++...|+||+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 104 CREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred hcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 5789999999999999999996321222233 68899999999999999999999999999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=274.80 Aligned_cols=272 Identities=18% Similarity=0.246 Sum_probs=188.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc------------------HHHHHHHHHcCCC
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD------------------DKIIARANELGED 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g------------------~kI~~~A~~~g~~ 158 (574)
.-++.||-+|+|.+||||+|.++.+|+++|++|.+|++|.++++.||+| .++...+...|..
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5678889999999999999999999999999999999999999999994 4444444445654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC-C
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD-K 221 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~-~ 221 (574)
.+|+++|...|.+.|+.|||. ++ +.++| ++.+.|.+++...... .....||... -
T Consensus 99 -~s~~~h~~~~~~~~l~~~gi~-~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-----~~~~~~~P~~pi 170 (515)
T TIGR00467 99 -TSYAEHFLIPFLESLPVLGIN-PE-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-----KLEENWYPISVF 170 (515)
T ss_pred -HHHHHHHHHHHHHHHHHcCCe-EE-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-----ccCCCceeeeee
Confidence 999999999999999999996 33 33343 2333444444443321 1235566554 3
Q ss_pred CCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeecc
Q 008191 222 FPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGG 300 (574)
Q Consensus 222 ~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G 300 (574)
|+.||++..... +.....+|.......+. -+-.-..|. .+.+|-+.+|. |.+ + .+|+...|
T Consensus 171 c~~cGrv~~~~~-~~~~~~~v~Y~c~cG~~----g~~~~~~g~--~KL~WkvdW~~RW~~---------l--gV~~Ep~G 232 (515)
T TIGR00467 171 CENCGRDTTTVN-NYDNEYSIEYSCECGNQ----ESVDIYTGA--IKLPWRVDWPARWKI---------E--KVTFEPAG 232 (515)
T ss_pred cCCcCccCceEE-EecCCceEEEEcCCCCE----EEEeecCCC--cccCCCCCcHhhHhh---------h--CcccccCC
Confidence 899999754222 22111233222111110 000000111 14566666665 533 4 47899999
Q ss_pred ccccCccch----HHHHHHhhccCCCCceEEEEeeEEEe--CCcccccccCceeehhhhhhccChhhHHHHhhccCCCCC
Q 008191 301 MDLVFPHHE----NEIAQSCAACNNSHISYWIHNGFVTI--DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374 (574)
Q Consensus 301 ~Dl~fpH~~----~~~A~~~a~~~~~~~~~~~h~g~v~~--~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~ 374 (574)
+||.-+-.. ..+|+ +++++.+|..+ ..+|+.+ +|+|||||+||+|+++|+++.++++++||++++.+++++
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~~~P~~~--~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ 309 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQYSPPVTV--QYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFH 309 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCCCCCcCc--EEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCC
Confidence 998765433 33444 56667666543 2477655 567999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 375 INYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 375 ~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
++|+++.+ ++...+.++...+..
T Consensus 310 ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 310 ISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred CcCCHHHH-HHHHHHHHHHHHHHh
Confidence 99999988 888888877776654
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=263.96 Aligned_cols=391 Identities=20% Similarity=0.226 Sum_probs=264.3
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
--|-|.|.+||||.|.|++.|+++||.|++||+|.+.+|+|..|.+.+++|.+.|+.|.+++..+++.+++.|.+||+.
T Consensus 64 MFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~- 142 (876)
T KOG0435|consen 64 MFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGIS- 142 (876)
T ss_pred ecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcc-
Confidence 3466779999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcccc----cccHHHHHHHHHHHHHCCceeeecCceeecCCCCC--------Cccc--ccC-----------------
Q 008191 182 PSVEPRV----SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--------EYGQ--LSG----------------- 230 (574)
Q Consensus 182 ~d~~~r~----s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--------~yg~--Ls~----------------- 230 (574)
+|+.-.- .+|....|.+|-+|.++|+||..+-.|.||+-++. .-|+ -||
T Consensus 143 FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfiktta 222 (876)
T KOG0435|consen 143 FDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTA 222 (876)
T ss_pred cccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhH
Confidence 5543222 27999999999999999999999988988875421 0000 000
Q ss_pred -----------------------------------------c-----------ccccc----------------------
Q 008191 231 -----------------------------------------R-----------KLEDN---------------------- 236 (574)
Q Consensus 231 -----------------------------------------~-----------~~~~~---------------------- 236 (574)
. .++.+
T Consensus 223 YAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lk 302 (876)
T KOG0435|consen 223 YAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLK 302 (876)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHH
Confidence 0 00000
Q ss_pred ---c-------------------CCCccc-------cCCC---------ccCccchhhcccc----------------cC
Q 008191 237 ---R-------------------AGERVA-------VDSR---------KKNPADFALWKSA----------------KE 262 (574)
Q Consensus 237 ---~-------------------~g~~v~-------~~~~---------k~~~~Df~lwk~~----------------~~ 262 (574)
+ .|..+. ++.+ ..+-+|+.+|..- |.
T Consensus 303 efl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~ 382 (876)
T KOG0435|consen 303 EFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKK 382 (876)
T ss_pred HhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhh
Confidence 0 000000 0000 0112477776540 00
Q ss_pred -------C----------------------C------Ccc----ccCCcCcCCCCcc-chh-------------------
Q 008191 263 -------G----------------------E------PFW----ESPWGPGRPGWHI-ECS------------------- 283 (574)
Q Consensus 263 -------g----------------------~------~~w----~~~WG~g~PgWhi-ecs------------------- 283 (574)
+ . -.| -.-||.+.|-=|+ +|-
T Consensus 383 ~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~ 462 (876)
T KOG0435|consen 383 NEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDF 462 (876)
T ss_pred hccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCccccccccc
Confidence 0 0 012 1248877774332 111
Q ss_pred ------------------------------HHHH---------hhhC----------------CCceeeeccccccCccc
Q 008191 284 ------------------------------AMSA---------AYLG----------------HSFDIHGGGMDLVFPHH 308 (574)
Q Consensus 284 ------------------------------am~~---------~~lG----------------~~~dih~~G~Dl~fpH~ 308 (574)
.|-. +|+. -|+||.+||+.|.--|.
T Consensus 463 ~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHL 542 (876)
T KOG0435|consen 463 TPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHL 542 (876)
T ss_pred CCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHH
Confidence 1100 0111 17899999999987777
Q ss_pred hHHHHHHhhcc-------CCCCceEEEEee-----------------------------EEEe---------CCcccccc
Q 008191 309 ENEIAQSCAAC-------NNSHISYWIHNG-----------------------------FVTI---------DSEKMSKS 343 (574)
Q Consensus 309 ~~~~A~~~a~~-------~~~~~~~~~h~g-----------------------------~v~~---------~G~KMSKS 343 (574)
.|-.-.+.-+. .+||.+. +..| .+.+ -=+|||||
T Consensus 543 lYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKS 621 (876)
T KOG0435|consen 543 LYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKS 621 (876)
T ss_pred HHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhc
Confidence 76554333221 1122211 1111 1111 12599999
Q ss_pred cCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcC----CCCC
Q 008191 344 LGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLL--DAAALK----DSIP 416 (574)
Q Consensus 344 ~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~--~~~~~~----~~~~ 416 (574)
++|.|+|.|++.+||+|++|+++|-. ++++++++++..+....+.+.|+|....++...-... .+.... ....
T Consensus 622 K~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~ 701 (876)
T KOG0435|consen 622 KHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAET 701 (876)
T ss_pred ccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhH
Confidence 99999999999999999999999986 9999999999999999999999998887765442111 111111 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHH
Q 008191 417 PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYS 495 (574)
Q Consensus 417 ~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~ 495 (574)
..+.+..+.++..+.+.+..++..+.|++.++.|.+.+-+.+........ .....|..+..+| ++.|+.++
T Consensus 702 ~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h~~--------~~~~al~~lv~mlaP~aPh~as 773 (876)
T KOG0435|consen 702 RKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSP--------EFERALEALVIMLAPFAPHVAS 773 (876)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCh--------HHHHHHHHHHHHHhccCchhHH
Confidence 46777888999999999999999999999999999877665543221111 1122233333334 78999999
Q ss_pred HHHHHHH
Q 008191 496 EVLLQLR 502 (574)
Q Consensus 496 ~i~~~l~ 502 (574)
|+|..|.
T Consensus 774 E~Ws~l~ 780 (876)
T KOG0435|consen 774 ELWSALA 780 (876)
T ss_pred HHHHHHh
Confidence 9998875
|
|
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=243.16 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=161.3
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhc------cChhhHHH
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL------YHPLALRL 364 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~------~~~d~lR~ 364 (574)
..|+..-|.|..+-+.---.-.+.|...+ |+..+++ |||... +|.|||||+||||+|+.++++ ||+|.|||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~viv-HGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIV-HGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheee-eeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 35788889998777666666677777666 5556645 699775 799999999999999999998 99999999
Q ss_pred HhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccC
Q 008191 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDL 438 (574)
Q Consensus 365 ~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~ 438 (574)
|.+.+.+..++...+..|.++...+.++.++++.+...+.+.... ....-+++.++..+.++.+++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 999889999999999999999999999999999888877665321 1112346778889999999999999 999
Q ss_pred CHHHHHHHHHHHHHH-H-HHHHHhhhc-----c-hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 439 HTTVVLAALSDPLKT-I-NDLLHTRKG-----K-KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 439 n~~~al~~l~~l~~~-~-N~~~~~~~~-----~-~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++.+++..|..|... + |-|++-.+. + ...+|...-..+...+..+..++ +|.|+-.+|+|+.+.
T Consensus 724 ~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP 796 (937)
T KOG0433|consen 724 KFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLP 796 (937)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCC
Confidence 999999999988653 3 556665541 1 22334433333444555566665 899999999999875
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=208.96 Aligned_cols=142 Identities=32% Similarity=0.368 Sum_probs=131.6
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+++|||+|+|++||||+|+++.+|+++|+||++|++|.+++++||+|++|...|.+.+.+++++++++.+.|.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcc
Q 008191 179 CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWK 258 (574)
Q Consensus 179 I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk 258 (574)
T Consensus 78 -------------------------------------------------------------------------------- 77 (143)
T cd00802 78 -------------------------------------------------------------------------------- 77 (143)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CC
Q 008191 259 SAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DS 337 (574)
Q Consensus 259 ~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G 337 (574)
|+++|+++...+.+...+++++|+|+.+ |+.+..+++++++... ...|+|.|+|+. +|
T Consensus 78 -------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 78 -------------------YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred -------------------HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 8899999988877777899999999998 9999999999987543 346789999998 55
Q ss_pred ccccccc
Q 008191 338 EKMSKSL 344 (574)
Q Consensus 338 ~KMSKS~ 344 (574)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 9999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=223.56 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=182.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccC
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTH 370 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~ 370 (574)
|.|.-.-|.|+.+-+.---...+.+++++| +.|+ +.||.|+. +|+|||||+.|+.+|..++++||+|+||+||+.+|
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSP 632 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSP 632 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCc
Confidence 445666688888776655566777888875 4565 77999997 89999999999999999999999999999999985
Q ss_pred C--CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhh-----------hcCCCCChhHHHHHHHHHHHHHHHHHc
Q 008191 371 Y--RSPINYSVVQLESASERI-FYIYQTLHDCEKALSLLDAA-----------ALKDSIPPDTVTSINKFHNDFLASMSD 436 (574)
Q Consensus 371 ~--~~~~~fs~~~l~~a~~~l-~~l~~~l~~~~~~l~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~am~d 436 (574)
. ...+.|.++++.+..+.+ --+||.++.+......+... ...+..++|+....+.+..-+++.| +
T Consensus 633 VvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~ 711 (1070)
T KOG0434|consen 633 VVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-D 711 (1070)
T ss_pred cccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 4 589999999999988764 36777777665544332110 1223467999999999999999999 9
Q ss_pred cCCHHHHHHHHHHHHHHH-HHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHHH-hh
Q 008191 437 DLHTTVVLAALSDPLKTI-NDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLREKAL-KR 508 (574)
Q Consensus 437 d~n~~~al~~l~~l~~~~-N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~~~~-~~ 508 (574)
.+....++..|..|+..+ |.|+.-++. + ...+....|..+..+|..+.+++ ++.|+.+|-++|.|+.... +.
T Consensus 712 ~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~ 791 (1070)
T KOG0434|consen 712 QYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDK 791 (1070)
T ss_pred heehhhhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccc
Confidence 999999999999999876 888765541 1 22345566777777888888887 6999999999999875432 00
Q ss_pred -----ccc----cHHHHHHHHH---HHHHHhhhhcHHHHHHHHHH
Q 008191 509 -----ADL----TEDQVLQRIE---DRTVARKNKEYEKSDAIRKD 541 (574)
Q Consensus 509 -----~~~----~~~~i~~Li~---~R~~AR~~Kdf~~AD~IRd~ 541 (574)
.++ .|..-+.++. +|...|.++-.+++..||++
T Consensus 792 ~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRer 836 (1070)
T KOG0434|consen 792 NEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRER 836 (1070)
T ss_pred cCCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhc
Confidence 000 1211122332 25567777778888888873
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=228.60 Aligned_cols=273 Identities=18% Similarity=0.236 Sum_probs=194.9
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHH----H--HHHHH-cCCC--------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKI----I--ARANE-LGED-------- 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI----~--~~A~~-~g~~-------- 158 (574)
.--++-+|.||+|.+||||+|..+.+|+++|.|+.+|++|.+++-+||+| .|+ . +..++ .|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 34567889999999999999999999999999999999999999999998 333 2 22222 3443
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC
Q 008191 159 --PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220 (574)
Q Consensus 159 --~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~ 220 (574)
...|++++...|.+.|+.+||. +.+ .++| ++.++|.+++.+...+ .-...|+...
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~-~E~-~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-----~~~e~~~P~~ 171 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIE-VEF-VSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-----ELEEDWSPFM 171 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCc-eEE-EEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-----cccCCceecc
Confidence 4789999999999999999996 332 2222 4555666666665544 1223454443
Q ss_pred -CCCCcccccCcccccccCCCccccCCCccCc--cchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCcee
Q 008191 221 -KFPEYGQLSGRKLEDNRAGERVAVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDI 296 (574)
Q Consensus 221 -~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~di 296 (574)
-|+.||++....+.+...+.+|.......+. .|.. .|. -..+|-+.+|. |. +| .+|+
T Consensus 172 piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir------~g~--~KL~WRvdWp~RW~---------~l--gVd~ 232 (521)
T COG1384 172 PICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR------GGE--GKLPWRVDWPMRWA---------AL--GVDF 232 (521)
T ss_pred ccccccCCcceeEEEEecCCceEEEEecCCccceeecc------ccC--cccccCcCccchhh---------cc--Cccc
Confidence 3889999654444433222244332211111 1111 010 13566666665 52 24 4789
Q ss_pred eeccccccCccchHHHHHHhhc---cCCCCceEEEEeeEEEeCC-cccccccCceeehhhhhhccChhhHHHHhhccCCC
Q 008191 297 HGGGMDLVFPHHENEIAQSCAA---CNNSHISYWIHNGFVTIDS-EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYR 372 (574)
Q Consensus 297 h~~G~Dl~fpH~~~~~A~~~a~---~~~~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~ 372 (574)
...||||.-+...+..+...+- +.+||..++ ++|++++| +|||||+||+|+++|+++.+.|+.|||+++++.+.
T Consensus 233 EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~--YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~ 310 (521)
T COG1384 233 EPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFV--YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPN 310 (521)
T ss_pred ccCCcccccccCchHHHHHHHHHhcCCCCCCCCc--eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCC
Confidence 9999999999888888766554 457887774 49999987 89999999999999999999999999999999898
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHHHH
Q 008191 373 SPINYSVVQ-LESASERIFYIYQTL 396 (574)
Q Consensus 373 ~~~~fs~~~-l~~a~~~l~~l~~~l 396 (574)
+.++|+.+. +.+....+.++.+..
T Consensus 311 r~~~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 311 RHIDFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred cceecCCCCChhHHHHHHHHHHHHH
Confidence 888888887 777777666544443
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-26 Score=232.15 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=151.6
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHHHHHHHHc------CCC--------
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKIIARANEL------GED-------- 158 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI~~~A~~~------g~~-------- 158 (574)
+..-++-+|-+|+|.+||||+|..+.+|+++|.|+.+|++|.++..+||.| .||....-+. |++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 456778889999999999999999999999999999999999999999999 5655432221 222
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC
Q 008191 159 --PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220 (574)
Q Consensus 159 --~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~ 220 (574)
...|+++|...|.+.|+.|||. +++. ++| ++.+.|.+++.+..... ....||...
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie-~e~~-s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~-----~~~~y~Pf~ 174 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIE-YEFI-SQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE-----RPETYSPFL 174 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEE-ECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCc-eEEE-eHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC-----CCCCeeeee
Confidence 3789999999999999999996 3221 222 34555666666654432 233455543
Q ss_pred -CCCCcccccCccccccc-CCCccccCC-CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceee
Q 008191 221 -KFPEYGQLSGRKLEDNR-AGERVAVDS-RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297 (574)
Q Consensus 221 -~~~~yg~Ls~~~~~~~~-~g~~v~~~~-~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih 297 (574)
-|+.||++....+.+.. .+.+|.... ...+. -+-.-..|. -..+|-+.+|. --.++ .+|+.
T Consensus 175 piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~----g~~~i~~g~--gKL~WkvDW~m--------RW~~l--gVdfE 238 (360)
T PF01921_consen 175 PICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHE----GEVDITGGN--GKLQWKVDWPM--------RWAAL--GVDFE 238 (360)
T ss_dssp EEETTTEE--EEEEEEE--SSSEEEEE--TTS-------EEETTTT---EEE-HHHHHHH--------HHHHT--T-SEE
T ss_pred eeccccCCcccceeeEeecCCCEEEEEecCCCCE----EEEecCCCc--ccccCCCcChh--------hhhhc--Cceec
Confidence 27899996443333221 222332211 11110 000000110 12333333332 12234 47899
Q ss_pred eccccccCccchHHHHHHhh---ccCCCCceEEEEeeEEEeCCc-ccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCA---ACNNSHISYWIHNGFVTIDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a---~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
..||||.-+...+..+.-.| ++.+||..+ .++|++++|. |||||+||+++++|+|+-+.|++|||+++++.+.+
T Consensus 239 p~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~ 316 (360)
T PF01921_consen 239 PFGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNK 316 (360)
T ss_dssp EEEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS
T ss_pred cCCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCc
Confidence 99999999888888876666 445666544 4699999876 99999999999999999999999999999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHHHH
Q 008191 374 PINYSVV-QLESASERIFYIYQ 394 (574)
Q Consensus 374 ~~~fs~~-~l~~a~~~l~~l~~ 394 (574)
..+|+.+ .+......+.++.+
T Consensus 317 ~~~~~~~~~i~~~~Deyd~~~~ 338 (360)
T PF01921_consen 317 AKDFSFDLVIPRLYDEYDRLER 338 (360)
T ss_dssp -EEE--STTHHHHHHHHHHHHH
T ss_pred ceEeccCcchHHHHHHHHHHHH
Confidence 9999988 77777776654443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-24 Score=232.75 Aligned_cols=264 Identities=23% Similarity=0.240 Sum_probs=197.2
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+++|.+. |+|+|+|++||||+|++++.+.++| +|+..++..+||.|.+|.+ ....|.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHH
Confidence 5678888 9999999999999999999999999 5888999999999987732 123455899999
Q ss_pred HHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee--cCceeecCCC---CC-CcccccCc-cc---ccccCCC---
Q 008191 174 MVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV--DGDVYFSVDK---FP-EYGQLSGR-KL---EDNRAGE--- 240 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~--~~~v~f~~~~---~~-~yg~Ls~~-~~---~~~~~g~--- 240 (574)
|+.||+. +|..++.|+|.+...+++++|+++|+||.- ....+ .-.. .+ .|-.++.. ++ +.|..|+
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~-~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~ 239 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEF-KELRDAGKPCPHRDKSPEENLELWEKMLDGEYKE 239 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHH-HHHHhcCCCCCCcCCCHHHHHHHHHHhhcCcccc
Confidence 9999995 688889999999999999999999999963 11111 0000 00 11112211 11 2233333
Q ss_pred -----ccccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC---ccchH
Q 008191 241 -----RVAVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHEN 310 (574)
Q Consensus 241 -----~v~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f---pH~~~ 310 (574)
++..+....|| .||++|+......+ .||.++++|+.. .|...+|-|..|++|++ .|+.+
T Consensus 240 g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~PtY-------~fA~~VDD~l~GITHViRg~d~~~~ 308 (567)
T PRK04156 240 GEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPTY-------NFAVAVDDHLLGVTHVLRGKDHIDN 308 (567)
T ss_pred CCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEEe-------ccCceeeecCCCCCeEEcccccccC
Confidence 23333334455 79999987543333 388888888652 46678999999999999 99999
Q ss_pred HHHHHhhcc--CCCCceEEEEeeEEEeCCccccccc-------C--------ceeehhhhhh-ccChhhHHHHhhccCCC
Q 008191 311 EIAQSCAAC--NNSHISYWIHNGFVTIDSEKMSKSL-------G--------NFFTIRQVME-LYHPLALRLFLIGTHYR 372 (574)
Q Consensus 311 ~~A~~~a~~--~~~~~~~~~h~g~v~~~G~KMSKS~-------G--------n~i~~~d~l~-~~~~d~lR~~ll~~~~~ 372 (574)
.+.|...+. +.+++ +|+|.+.|+++|.|||||. | +..|+..+.+ .|.|+++|.|++...++
T Consensus 309 t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s 387 (567)
T PRK04156 309 TEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVK 387 (567)
T ss_pred hHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 998876653 33333 5689999999999999998 5 3467777776 49999999999988776
Q ss_pred -CCCCCCHHHHHHHHHH
Q 008191 373 -SPINYSVVQLESASER 388 (574)
Q Consensus 373 -~~~~fs~~~l~~a~~~ 388 (574)
++..|+++.|....+.
T Consensus 388 ~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 388 ETDATISWENLYAINRK 404 (567)
T ss_pred CCCcccCHHHHHHHHHH
Confidence 9999999999877654
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=214.44 Aligned_cols=250 Identities=22% Similarity=0.219 Sum_probs=162.6
Q ss_pred CCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-------c---------
Q 008191 92 KVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-------L--------- 155 (574)
Q Consensus 92 ~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-------~--------- 155 (574)
..+.+|.+..++|+|.||+||||+|+.+++|+|+|+|+..||+|....+++|+|.+|-.-+.. .
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 355689999999999999999999999999999999999999999999999999765321110 0
Q ss_pred ---------------C------------------------CChHHHHHH-HHHHHHHHHHhcCCCCCCCcccccc--cHH
Q 008191 156 ---------------G------------------------EDPISLSRR-YCEEFHQDMVDLHCLPPSVEPRVSD--HMP 193 (574)
Q Consensus 156 ---------------g------------------------~~~~e~a~~-~~~~f~~~l~~L~I~~~d~~~r~s~--~~~ 193 (574)
. ....++..+ ..+..++++++|+|. .|.+...++ +.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~-fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR-FDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCcccchhhhhh
Confidence 0 012334444 677888899999996 677664443 556
Q ss_pred HHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcC
Q 008191 194 HIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGP 273 (574)
Q Consensus 194 ~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~ 273 (574)
.+.+++++|.++|++|+.+|.+|++++.+ |...+..+. -.+|+...+. +|.+..+..
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~~k~~Vl~-ksDGt~~Y~t------rDiA~~~~r------------- 232 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDLTKF---GDDKDRVLR-KSDGTSTYLT------RDIAYHLYR------------- 232 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEGCCT---STSS-EEEE-ETTSEB-HHH------HHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEechhc---CCCCcceEE-cCCCceEEEc------chHHHHHHH-------------
Confidence 78999999999999999999999998754 432222111 1233332211 143321110
Q ss_pred cCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEE-EEeeEEEe-CCc-ccccccCceee
Q 008191 274 GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYW-IHNGFVTI-DSE-KMSKSLGNFFT 349 (574)
Q Consensus 274 g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~-~h~g~v~~-~G~-KMSKS~Gn~i~ 349 (574)
....+....|.+.|.|+. .|...-.+.+.+++..+. .++. +..|+++. +|+ ||||++||+|+
T Consensus 233 -------------~~~~~~d~~iyV~~~~q~-~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~ 298 (354)
T PF00750_consen 233 -------------FEEYGFDKIIYVVGADQK-GHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVIT 298 (354)
T ss_dssp -------------HCCSS-SEEEEEEEGGGH-HHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTB
T ss_pred -------------HhhhccccEEEEecCchh-hHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceE
Confidence 011445566888999865 233334455566654221 2221 33455655 676 89999999999
Q ss_pred hhhhhh--------------------------ccChhhHHHHhhccCCCCCCCCCH
Q 008191 350 IRQVME--------------------------LYHPLALRLFLIGTHYRSPINYSV 379 (574)
Q Consensus 350 ~~d~l~--------------------------~~~~d~lR~~ll~~~~~~~~~fs~ 379 (574)
++|+|+ ..+..++||++|+....+++.|+|
T Consensus 299 l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 299 LDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 999999 577888999999988888888875
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=174.20 Aligned_cols=155 Identities=32% Similarity=0.441 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Q 008191 380 VQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLH 459 (574)
Q Consensus 380 ~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~ 459 (574)
+.|.++.+.+.+|++++.++. .+. .. ...+..+.+.|.+||+||||||.|+++|+++++.+|.++.
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999887653 110 00 1123456789999999999999999999999999999885
Q ss_pred hhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q 008191 460 TRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIR 539 (574)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IR 539 (574)
... . .+..+...+..++.+|||......+.... .....+..+++|+.|+++|++||++|||++||+||
T Consensus 68 ~~~-----~---~~~~~~~~l~~~~~vLGl~~~~~~~~~~~----~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~~AD~IR 135 (156)
T cd07963 68 EDI-----E---KAAALAALLKALGGVLGLLQQDPEAFLQG----GTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIR 135 (156)
T ss_pred cch-----H---HHHHHHHHHHHHHhccCCCCCCHHHHHhc----cccccccCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 321 1 13445566777888999853221111100 00011223456999999999999999999999999
Q ss_pred HHhHhCCcEEEeCCCCeEEEE
Q 008191 540 KDLAAVGIALMDSPVGTTWRP 560 (574)
Q Consensus 540 d~L~~~GI~leDt~~Gt~W~~ 560 (574)
++|.++||.|+|+|+||+|++
T Consensus 136 d~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 136 DELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999974
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=169.26 Aligned_cols=211 Identities=19% Similarity=0.188 Sum_probs=152.3
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
.=|+|||||++||||+|++++.|+++| ++++.++..+||.|++.+ + ....+.+.|.++|+.||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLGl 67 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLGV 67 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999 789999999999998765 1 233445569999999999
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhccc
Q 008191 180 LPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKS 259 (574)
Q Consensus 180 ~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~ 259 (574)
. +|..++.|+|++.+++++++|+++|++|.. +. .| .||.+
T Consensus 68 ~-~d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~-------------~~------------~~~~i--- 107 (240)
T cd09287 68 K-WDEVVIASDRIELYYEYARKLIEMGGAYVH-----------PR-------------TG------------SKYRV--- 107 (240)
T ss_pred C-CCCccchhccHHHHHHHHHHHHHcCCcccC-----------cc-------------cC------------CcEEE---
Confidence 5 788889999999999999999999999970 00 00 13332
Q ss_pred ccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 260 AKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 260 ~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
+|.+|+.|+.- ....| +..-+=|.|+. +.....+.+..+++.++| .| .|...++.+|+|
T Consensus 108 ---------------~ptY~la~vVD-D~~~g--IThViRg~d~~-~~t~~q~~l~~~Lg~~~P-~~-~H~pll~~~~~k 166 (240)
T cd09287 108 ---------------WPTLNFAVAVD-DHLLG--VTHVLRGKDHI-DNTEKQRYIYEYFGWEYP-ET-IHWGRLKIEGGK 166 (240)
T ss_pred ---------------EEccccceeee-ccccC--CCeEEechhhh-hCCHHHHHHHHHcCCCCC-cE-EeeeeecCCCCe
Confidence 25555543211 00112 23334466654 444556667777766554 34 588999889999
Q ss_pred cccccCc---------------eeehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH
Q 008191 340 MSKSLGN---------------FFTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASE 387 (574)
Q Consensus 340 MSKS~Gn---------------~i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~ 387 (574)
|||+.+. ..++..+.+ .|.|++++-|++.. --.++..++++.|....+
T Consensus 167 LSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred eccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 9999842 134555543 68999999888875 345788899888876654
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=147.98 Aligned_cols=356 Identities=16% Similarity=0.149 Sum_probs=238.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH---HH-------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI---IA------------------- 150 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI---~~------------------- 150 (574)
..++|-+-..+|+.-..+|+||+|+.|++|.++|.+++.|++|..+..+.|+|.+. |.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 34678888999999999999999999999999999999999999999999998542 11
Q ss_pred -------------------HHHH-----cCCC------hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHH
Q 008191 151 -------------------RANE-----LGED------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT 200 (574)
Q Consensus 151 -------------------~A~~-----~g~~------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~ 200 (574)
+|.+ +|.+ |..+|+-..++|...+++|.|+- ..-..|.|.+.|.++++
T Consensus 266 QvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vve 343 (656)
T KOG4426|consen 266 QVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVVE 343 (656)
T ss_pred HHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHHH
Confidence 1111 1222 46788999999999999999963 23345679999999999
Q ss_pred HHHHCCceeeecCc-eeecCCCCCCcccccCcccccccCCCccccCCCccCccchh-hcccccCCCCccccCCcCcCCCC
Q 008191 201 QILDNGFAYRVDGD-VYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA-LWKSAKEGEPFWESPWGPGRPGW 278 (574)
Q Consensus 201 ~L~~kG~aY~~~~~-v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~-lwk~~~~g~~~w~~~WG~g~PgW 278 (574)
.|..||+..+.+|. +.|... |+- +..+.. .+|.. .-+..|.+ +|-+-.+.. . .|
T Consensus 344 el~~kglvee~~Gr~i~f~~g----~~I--PLtvVK-SDGGf------tYdtsDlaAl~yRl~EEk----a-------dw 399 (656)
T KOG4426|consen 344 ELKSKGLVEEDDGRRIMFPEG----CDI--PLTVVK-SDGGF------TYDTSDLAALKYRLNEEK----A-------DW 399 (656)
T ss_pred HHhcCCceeecCCceEeccCC----CCc--ceEEEe-cCCCc------ccccchHHHHHHHHHHhh----c-------Ce
Confidence 99999999998764 555543 210 000000 11211 11123543 343221110 1 12
Q ss_pred ccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe---CCcccccccCceeehhhhhh
Q 008191 279 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI---DSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 279 hiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~~d~l~ 355 (574)
-|. +.-.|.-. .|..++-.|+-.+...+...++ -|.||-.+ +|+|+-++.|.+|-+.|+|+
T Consensus 400 iIY--------------VvD~GQs~-Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLd 463 (656)
T KOG4426|consen 400 IIY--------------VVDSGQSQ-HFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLD 463 (656)
T ss_pred EEE--------------EeeCchhH-HHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHH
Confidence 221 00012110 0111222233333334444555 67788554 67899999999999999987
Q ss_pred c-----------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 008191 356 L-----------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSL 405 (574)
Q Consensus 356 ~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~ 405 (574)
+ ++-..+.|.-|+..--++.-||.+.|.+-+.+.. ++.++..++.++..+
T Consensus 464 Eg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rk 543 (656)
T KOG4426|consen 464 EGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARK 543 (656)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHH
Confidence 2 2223578888887778999999999877665433 555666666665543
Q ss_pred hhh-----------hh---cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc---h---
Q 008191 406 LDA-----------AA---LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK---K--- 465 (574)
Q Consensus 406 ~~~-----------~~---~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~---~--- 465 (574)
... .+ ...+.+..+...+-++.+.+.+++ +++-++..+.++++++..+..||+++... +
T Consensus 544 sg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~eg~ 622 (656)
T KOG4426|consen 544 SGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSLFLHVLCDYLYELATLFTEFYDSCYVIEKNKEGE 622 (656)
T ss_pred cCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccEEeccccccc
Confidence 210 00 111223456667778888888888 99999999999999999999999887621 1
Q ss_pred ----hhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 466 ----QAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 466 ----~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
...|+.++.++..+++..+.+|||-|
T Consensus 623 i~~vn~sRllLCeata~VmrkcF~iLGi~p 652 (656)
T KOG4426|consen 623 IPFVNMSRLLLCEATAAVMRKCFHILGIKP 652 (656)
T ss_pred cccchhHHHHHHHHHHHHHHHhhHhhCCcc
Confidence 14678888889999999999999987
|
|
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=151.90 Aligned_cols=356 Identities=15% Similarity=0.106 Sum_probs=235.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH----------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA---------------------- 150 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~---------------------- 150 (574)
.++++-+...+|+...+.|+||.|+.+++-.++...+..|++|..+.+.-|+|.++--
T Consensus 108 ~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL 187 (567)
T KOG1195|consen 108 SGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHL 187 (567)
T ss_pred cCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHH
Confidence 3578999999999999999999999999999999999999999999999999744210
Q ss_pred --------H-HHH---------------cC------CChHHHHHHHHHHHHHHHHhcCCCCCCCccccc-ccHHHHHHHH
Q 008191 151 --------R-ANE---------------LG------EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DHMPHIIDMI 199 (574)
Q Consensus 151 --------~-A~~---------------~g------~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~~~~i~~~i 199 (574)
+ |++ ++ +-|+.+-+--++.+.+.+++|||. +|.++..| -..+.++...
T Consensus 188 ~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~-FD~y~gESqv~~e~~~~~~ 266 (567)
T KOG1195|consen 188 FDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVK-FDEYSGESQVSNEKMQEAL 266 (567)
T ss_pred HHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhcee-eeeccchHHHHHHHHHHHH
Confidence 1 111 00 012335555667778889999996 88898888 5667888999
Q ss_pred HHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCc
Q 008191 200 TQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWH 279 (574)
Q Consensus 200 ~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWh 279 (574)
+.+..+|+.-+-+|...++.++.. +-.+..+....+|.+..+. +|.+
T Consensus 267 d~~rs~~l~~e~dG~~vidL~~~~---~~~~~~~V~ksdgttLYlt------Rdia------------------------ 313 (567)
T KOG1195|consen 267 DLLRSANLTEEIDGTIVIDLSKID---KKAGKAVVQKSDGTTLYLT------RDIA------------------------ 313 (567)
T ss_pred HHHHhcCCcccCCCcEEEEecccC---cccceEEEEcCCCceehHH------HHHH------------------------
Confidence 999999977788999999887532 1111112222234443221 1221
Q ss_pred cchhHHHHhhhCCCce--eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhh--
Q 008191 280 IECSAMSAAYLGHSFD--IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-- 355 (574)
Q Consensus 280 iecsam~~~~lG~~~d--ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~-- 355 (574)
+.+.++-.+.+| |.+..... --|.....-++++.+++ |+.-.-|..|-. +.=||+++|+++.+.|+++
T Consensus 314 ----aal~Rl~~y~fdr~iYVvd~~Q-~~hf~~lf~ilk~mg~~-~a~~~qHV~~G~--v~GmsTRkG~~~fl~dil~e~ 385 (567)
T KOG1195|consen 314 ----AALDRLEKYSFDRLIYVVDSQQ-KDHFCQLFEILKKMGFD-WAKKLQHVNFGR--VQGMSTRKGKVVFLDDILEEA 385 (567)
T ss_pred ----HHHHHHHhcCcceEEEEechHH-HHHHHHHHHHHHHhCch-hhhhcceecccc--cccccccCCceeeHHHHHHHH
Confidence 111111111111 22221100 01222222334444433 222212222222 2459999999999999887
Q ss_pred --------------------------ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh
Q 008191 356 --------------------------LYHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSLLDA 408 (574)
Q Consensus 356 --------------------------~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~~~~ 408 (574)
..|..++..-.+...-.++..|+|+.+-......+ +|..+..++.+...++..
T Consensus 386 re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~ 465 (567)
T KOG1195|consen 386 REQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSD 465 (567)
T ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccc
Confidence 25677777777777777888999998877776544 555666665555444321
Q ss_pred --h--------h-cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-----hhhhHHH
Q 008191 409 --A--------A-LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-----QAMRLES 472 (574)
Q Consensus 409 --~--------~-~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-----~~~~~~~ 472 (574)
. . ..++.-..++..+..+.+.+..+| +++++...+.+|+.++.++++++..-+... .-.|+.+
T Consensus 466 ~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL~L 544 (567)
T KOG1195|consen 466 VTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARLLL 544 (567)
T ss_pred cCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHHHH
Confidence 0 0 011112456778889999999999 999999999999999999999987765332 2357888
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 008191 473 LAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 473 l~~~~~~l~~~l~iLGi~p 491 (574)
..++..+|.+.+++|||.|
T Consensus 545 f~AvRqVL~ngm~lLGitP 563 (567)
T KOG1195|consen 545 FSAVRQVLNNGMRLLGITP 563 (567)
T ss_pred HHHHHHHHHhHHHHhCCCc
Confidence 8899999999999999988
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-11 Score=134.26 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=150.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- .. =.++.=++|.|. ......+.+.+.++|+.||+. +
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~--~~---G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~-~ 67 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH--TG---GEFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGIS-W 67 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cC---CEEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCC-C
Confidence 5899999999999999999999884 23 367777888774 123346788999999999997 4
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCc----ccccCcccc-cccCCCc-
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEY----GQLSGRKLE-DNRAGER- 241 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~y----g~Ls~~~~~-~~~~g~~- 241 (574)
| --.+.|++.+...+++++|+++|.||.- ||... .+.| -.++..... ....|..
T Consensus 68 de~~~~QS~r~~~y~~~~~~L~~~g~aY~C-----~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~ 142 (470)
T TIGR00464 68 DEGPYYQSQRLDIYKKYAKELLEEGLAYRC-----YCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPP 142 (470)
T ss_pred CCCeeehhCCHHHHHHHHHHHHHcCCEEec-----CCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCc
Confidence 5 4456789999999999999999999942 22211 1111 112110000 0011111
Q ss_pred -cccCCCc------------------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 242 -VAVDSRK------------------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 242 -v~~~~~k------------------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
+.+.... ....|+++.| ..|.|.+|++|... ....| ++.-+-|.|
T Consensus 143 ~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R-------------sdG~ptY~~A~~vd-D~~~~--ithvIrG~d 206 (470)
T TIGR00464 143 VVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILR-------------SDGSPTYNFAVVVD-DYLMK--ITHVIRGED 206 (470)
T ss_pred eEEEEcCCCCceeEEecccceEEecCccCCCeEEEe-------------cCCCcccccHHHHH-HHhCC--CCEEEECch
Confidence 0000000 0011222222 24778888766432 12234 343447888
Q ss_pred ccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhc-cCh---------------------
Q 008191 303 LVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMEL-YHP--------------------- 359 (574)
Q Consensus 303 l~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~-~~~--------------------- 359 (574)
+.- |.....+...+++..+ +++ .|..++ ..+|.||||+.| .++++++++. |-|
T Consensus 207 ~~~-~t~~~~~l~~aLg~~~-p~~-~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~ 282 (470)
T TIGR00464 207 HIS-NTPKQILIYQALGWKI-PVF-AHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFF 282 (470)
T ss_pred hhc-CHHHHHHHHHHcCCCC-CeE-EEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccC
Confidence 763 4555566677776543 334 666663 458999999999 7899998875 233
Q ss_pred ---hhHHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 360 ---LALRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 360 ---d~lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
+++|+|.++....+++.|+++.+.-..+
T Consensus 283 ~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N~ 313 (470)
T TIGR00464 283 SLEELIEIFSLNRVSKSPAKFDWKKLQWLNA 313 (470)
T ss_pred CHHHHHHhcCcccCCCCCCeecHHHHHHHHH
Confidence 5567776666666788888888555444
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-13 Score=143.99 Aligned_cols=255 Identities=21% Similarity=0.235 Sum_probs=159.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||||++++.+.++| .|+..++.-+||.|.+ + -...|.+.|.++|+.||+. +
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~---R----------~~~e~~~~I~edL~wLGi~-~ 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR---R----------VKPEAYDMILEDLDWLGVK-G 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc---c----------ccHHHHHHHHHHHHHcCCC-C
Confidence 799999999999999999999997 4677899999999863 1 1224889999999999997 7
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCCCcccccCc-cc---ccccCCCc-------
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFPEYGQLSGR-KL---EDNRAGER------- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~~yg~Ls~~-~~---~~~~~g~~------- 241 (574)
|..+++|+|++.+.+++++|+++|+||.-. +..|-| .|-.++.. .+ ++|..|+.
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~-----~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVAC-----ACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCC-----CccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 889999999999999999999999999631 111111 12222211 11 12222221
Q ss_pred -cccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 -VAVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 -v~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
+..+..-.| -.|+++++......+.--..| .+.|.++++|..- ....| +..-+=|.|+.- ..........++
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~VD-D~l~g--ITHviRg~E~~~-nT~rq~yl~~~l 309 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPID-DHLLG--VTHVLRGKDHID-NERKQQYIYMYF 309 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEee-cccCC--CCeEEechhhhc-CCHHHHHHHHHc
Confidence 111111112 257777765321111101122 2567777665321 11122 222233666543 111223334444
Q ss_pred cCCCCceEEEEeeEEEeCC-cccccccC-------ce--------eehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHH
Q 008191 319 CNNSHISYWIHNGFVTIDS-EKMSKSLG-------NF--------FTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVV 380 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G-~KMSKS~G-------n~--------i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~ 380 (574)
+..+ ..| .|.+++.+++ .|+||+.. .+ .|+..+.. .+.|++||-|++.. .-..+..++++
T Consensus 310 g~~~-P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~ 387 (560)
T TIGR00463 310 GWEL-PEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWK 387 (560)
T ss_pred CCCC-CeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHH
Confidence 4443 334 7889999864 59998763 11 24444443 69999999999996 45688899999
Q ss_pred HHHHHHHH
Q 008191 381 QLESASER 388 (574)
Q Consensus 381 ~l~~a~~~ 388 (574)
.|....+.
T Consensus 388 ~l~~~nr~ 395 (560)
T TIGR00463 388 NIYAFNKK 395 (560)
T ss_pred HHHHHHHH
Confidence 98877654
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=135.71 Aligned_cols=255 Identities=15% Similarity=0.156 Sum_probs=162.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||||++++...++|. +.=.++.=+||.|. ..-...|.+.+.++|+.||+. +
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~WLGl~-w 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGKIEIK-P 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHHhCCC-C
Confidence 5999999999999999999999985 23356677788774 223347889999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC----------CCcccccCc----ccccccCCC-----c--
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF----------PEYGQLSGR----KLEDNRAGE-----R-- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~----------~~yg~Ls~~----~~~~~~~g~-----~-- 241 (574)
|...+.|++.+...++.++|+++|.||.- ||.... ..|-.++.. ..+.|..|. .
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 77778899999999999999999999963 221110 012122110 011121121 1
Q ss_pred ---cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 ---VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 ---v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
+++...-.+..||++.+......+.....| .+.|.++++|..- ....| +..-+=|.|++ .+......+..++
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~VD-D~l~g--ITHviRg~E~~-~~t~~q~~l~~aL 227 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPIV-DSIEG--VTHALRTTEYD-DRDAQFFWIQKAL 227 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceeee-ccccC--CCeEEechhhh-cCCHHHHHHHHHh
Confidence 111111112357777765322122222334 5667776665211 11122 22223366654 4444555666677
Q ss_pred cCCCCceEEEEeeEEEeCCccccccc------Ccee---------ehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHH
Q 008191 319 CNNSHISYWIHNGFVTIDSEKMSKSL------GNFF---------TIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQ 381 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G~KMSKS~------Gn~i---------~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~ 381 (574)
+...|. + .|.+.+.+.|.||||+. .+.| |+..+-+ .|.|++||=|++.. .-..+..++++.
T Consensus 228 g~~~P~-~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~ 305 (523)
T PLN03233 228 GLRRPR-I-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAK 305 (523)
T ss_pred CCCCCe-e-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHH
Confidence 665443 4 45677788999999997 3344 5677664 69999999999996 557888999999
Q ss_pred HHHHHHH
Q 008191 382 LESASER 388 (574)
Q Consensus 382 l~~a~~~ 388 (574)
|....+.
T Consensus 306 l~~~nR~ 312 (523)
T PLN03233 306 FWAENKK 312 (523)
T ss_pred HHHHHHH
Confidence 9887664
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-10 Score=123.72 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=147.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +.=.|+.=|+|.|. .-....+.+.+.++|+.||+. .
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~-~ 70 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLGLD-W 70 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCCCC-C
Confidence 4899999999999999999999886 34467778888774 224457789999999999996 4
Q ss_pred CCc--------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCccc-cc
Q 008191 183 SVE--------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKL-ED 235 (574)
Q Consensus 183 d~~--------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~-~~ 235 (574)
|-- .+.|++.+...+++++|+++|.||.- ||... .+ .|-.++.... ..
T Consensus 71 De~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~C-----~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~ 145 (476)
T PRK01406 71 DEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYYC-----YCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAAR 145 (476)
T ss_pred CCCCccCCCCceehhcCHHHHHHHHHHHHHcCCeeec-----CCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Confidence 543 46689999999999999999999952 22110 01 1111211000 00
Q ss_pred ccCCCcc--cc--CC---------Cc-------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCce
Q 008191 236 NRAGERV--AV--DS---------RK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295 (574)
Q Consensus 236 ~~~g~~v--~~--~~---------~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~d 295 (574)
+..|... .+ .. .+ ....|+++.| ..|.|.+|..+. ......|.+
T Consensus 146 ~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R-------------sDG~ptY~~a~v-VdD~~~~it-- 209 (476)
T PRK01406 146 LAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILR-------------SDGTPTYNFAVV-VDDHLMGIT-- 209 (476)
T ss_pred HhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEe-------------cCCCccccchHH-HHHHHcCCC--
Confidence 1112210 00 00 00 0012333333 246788877654 122334443
Q ss_pred eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhc-cChhh------------
Q 008191 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMEL-YHPLA------------ 361 (574)
Q Consensus 296 ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~------------ 361 (574)
.-+-|.|++ .|.-...+...+++..+ ++ +.|..++ ..+|.||||+.| .++++++.+. |-|.+
T Consensus 210 hvIrG~d~~-~~t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s~ 285 (476)
T PRK01406 210 HVIRGEDHL-SNTPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWSH 285 (476)
T ss_pred EEEECchhh-cCHHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 333788855 34445556667777554 33 4676774 468999999999 7899998874 45544
Q ss_pred -----------HHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 362 -----------LRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 362 -----------lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
+|+|.++.-..++..|+++.|.-..+
T Consensus 286 ~~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~ 322 (476)
T PRK01406 286 GDQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNG 322 (476)
T ss_pred CccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHH
Confidence 44554444445666666666554444
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=139.04 Aligned_cols=202 Identities=19% Similarity=0.143 Sum_probs=138.1
Q ss_pred CCceeeeccccccCccchHHHHHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|+|+.+.|+|++--|..+.+--+.|+.. +.|++-.-.|||+++|++|||||.|||.|+++.+++||+|+.|+.|+..
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 48999999999999898877766666653 4677666889999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhh-cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD--AAA-LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~--~~~-~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
.--.|-||.+.....+ +-||++.+..+.+.+..-. ..+ ...-.|+-+.+.++..+..-.+++ ++.++..|+..
T Consensus 742 D~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccHH---HHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 6678999986654433 4455665555555443211 011 111234556677788888888888 88899999887
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 447 LSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
-+==..++..+|+...+.. -..+++. ..+.....+| +|.|+.++-+|..+.
T Consensus 818 Gfyd~qaArD~Yrel~g~~--mh~dLv~---r~ietqtlLLaPi~Ph~aeyiw~~~~ 869 (1080)
T KOG0437|consen 818 GFYDLQAARDMYRELCGEG--MHRDLVF---RFIETQTLLLAPICPHLAEYIWRTVL 869 (1080)
T ss_pred hhHHHHHHHHHHHHHhccc--ccHHHHH---HHHHHHHHHHhccchHHHHHHHHHhc
Confidence 5433333444444332211 1122222 2333333333 899998888887754
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=134.58 Aligned_cols=252 Identities=19% Similarity=0.117 Sum_probs=157.3
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
..|.|+|++||||||++++...++|. +.=.++.=+||.|.. .-...|.+.+.++|+.||+..
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLGi~~ 95 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRWLGFDW 95 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHHcCCCC
Confidence 46999999999999999999999985 334566677777732 233478899999999999974
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCc-cc---ccccCCCc--
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGR-KL---EDNRAGER-- 241 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~-~~---~~~~~g~~-- 241 (574)
.+...+.|++.+...+..++|+++|.||.- ||... ...|-.++.. .+ +.|..|..
T Consensus 96 d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 96 SGELRYASDYFDQLYEYAVELIKKGKAYVD-----DLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred CCCceeeecCHHHHHHHHHHHHHcCCEeeC-----CCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 355667889999999999999999999963 22210 0112122111 01 12333321
Q ss_pred ---c---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC------cc
Q 008191 242 ---V---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF------PH 307 (574)
Q Consensus 242 ---v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f------pH 307 (574)
+ ..+-...|+ .|+++.+......+.=-..| ...|.++++|. +|=|..|+.|+. .|
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~~----------vdD~l~gITHvlRg~E~~~~ 239 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAHC----------ISDAIEGITHSLCTLEFEDH 239 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccce----------eeccccCCceEEeccccccC
Confidence 1 111112233 47766664321111000122 23677776652 232333333332 23
Q ss_pred chHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCc-------e--------eehhhhhh-ccChhhHHHHhhcc-C
Q 008191 308 HENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGN-------F--------FTIRQVME-LYHPLALRLFLIGT-H 370 (574)
Q Consensus 308 ~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn-------~--------i~~~d~l~-~~~~d~lR~~ll~~-~ 370 (574)
......+..+++....+.+ ++.+++.++|.|||||.+. + .|+..+.+ .|.|+|||=|++.. -
T Consensus 240 t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~ 318 (554)
T PRK05347 240 RPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGV 318 (554)
T ss_pred hHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 3334455667764422333 3568899999999999964 2 26777764 69999999999986 4
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 008191 371 YRSPINYSVVQLESASER 388 (574)
Q Consensus 371 ~~~~~~fs~~~l~~a~~~ 388 (574)
-..+..++++.|....+.
T Consensus 319 s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 319 TKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCCeecHHHHHHHHHH
Confidence 467788999998877654
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=120.77 Aligned_cols=175 Identities=22% Similarity=0.182 Sum_probs=120.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- ++=.++.=++|.|.+ .-...+.+.+.++|+.||+. .
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 67 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLD-W 67 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999999887 455677788888841 12336778999999999996 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhccccc
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~ 261 (574)
|- ..+.|++.+...+.+++|+++| +
T Consensus 68 d~~~~~QS~r~~~y~~~~~~L~~~g--------g---------------------------------------------- 93 (230)
T cd00418 68 DEGPYRQSDRFDLYRAYAEELIKKG--------G---------------------------------------------- 93 (230)
T ss_pred CCCeeehhcCHHHHHHHHHHHHHcC--------C----------------------------------------------
Confidence 54 4567899999999999999999 1
Q ss_pred CCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCccc
Q 008191 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKM 340 (574)
Q Consensus 262 ~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KM 340 (574)
.|.+++.|+.- ....| ++.-+=|.|++ ........+..+++.++ +.| .|...+.. +|+||
T Consensus 94 -------------~p~Y~la~vvD-D~~~g--IThViRG~D~l-~st~~q~~l~~~Lg~~~-P~~-~H~pll~~~~g~KL 154 (230)
T cd00418 94 -------------YPLYNFVHPVD-DALMG--ITHVLRGEDHL-DNTPIQDWLYEALGWEP-PRF-YHFPRLLLEDGTKL 154 (230)
T ss_pred -------------Ccccccccccc-ccccC--CCEEEECHhhh-hchHHHHHHHHHcCCCC-CeE-EEeeeeeCCCCCCc
Confidence 11111111000 00011 22223355544 23333444555665544 345 77788875 67999
Q ss_pred ccccCceeehhhhhh-ccChhhHHHHhhccC
Q 008191 341 SKSLGNFFTIRQVME-LYHPLALRLFLIGTH 370 (574)
Q Consensus 341 SKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~ 370 (574)
|||.|+ ++++++.+ .+.|++++-|++...
T Consensus 155 SKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 155 SKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred cCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 999998 67888765 599999999988643
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=133.16 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=148.7
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|- +.-.|+.-|+|.|. ..-.+.+.+.|.++|+.|||. +
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~-~ 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARK-----HGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGIN-W 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCC-C
Confidence 5899999999999999877777665 67789999999983 123367889999999999997 7
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCcccc-cccCCCcc-
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKLE-DNRAGERV- 242 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~~-~~~~g~~v- 242 (574)
|.+.+.|+..+.+.+++++|+++|++|.- ||... .+ .|-.|+..... ....|...
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLYPC-----YETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEEEe-----cCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 77788888889999999999999999952 22211 00 11112211000 00011110
Q ss_pred -ccCC-----------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccccc
Q 008191 243 -AVDS-----------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304 (574)
Q Consensus 243 -~~~~-----------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~ 304 (574)
.+.. .-....||++.| ..|.|.+|++|+.- ....| +...+=|.|++
T Consensus 144 iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R-------------~dg~PtY~fA~vVD-D~~m~--ITHViRG~d~l 207 (445)
T PRK12558 144 WRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIR-------------ADGSYLYTLPSVVD-DIDMG--ITHIIRGEDHV 207 (445)
T ss_pred EEEecCCCceEEEEEeeeEeecccccCCCeEEEe-------------cCCCccccccceec-cccCC--CCEEEechhhh
Confidence 0000 000012333333 24668888765321 01112 22223366644
Q ss_pred CccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCCCCCCCCHH
Q 008191 305 FPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYRSPINYSVV 380 (574)
Q Consensus 305 fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~~~~~fs~~ 380 (574)
+..-..+.+..|++.++| .|.|...++. +|+|+||+.|. +++.++.+ .|-|++++=|++.- ++..+--|+.+
T Consensus 208 -~~t~~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~ 283 (445)
T PRK12558 208 -TNTAVQIQIFEALGAKPP--VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSME 283 (445)
T ss_pred -hCCHHHHHHHHHhCCCCC--eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHH
Confidence 233344455667765544 3478888875 78999999886 67877775 69999999988774 33333346877
Q ss_pred HHHHH
Q 008191 381 QLESA 385 (574)
Q Consensus 381 ~l~~a 385 (574)
.+.+.
T Consensus 284 eli~~ 288 (445)
T PRK12558 284 ELAES 288 (445)
T ss_pred HHHHh
Confidence 76554
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=136.79 Aligned_cols=255 Identities=16% Similarity=0.163 Sum_probs=159.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|. +.| .++.=+||-|. ..-...|.+.+.++|+.||+. +
T Consensus 219 aPsPtG~LHiG~ar~al~n~~~Ar~--~~G---~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~wLG~~-~ 279 (722)
T PLN02907 219 PPEPSGYLHIGHAKAALLNQYFARR--YKG---KLIVRFDDTNP-------------SKESDEFVENILKDIETLGIK-Y 279 (722)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCC---EEEEEecCCCC-------------CcCChHHHHHHHHHHHHcCCC-C
Confidence 6999999999999999999999984 344 56667777773 122337889999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC---------C-CCcccccCcc----cccccCCCc-------
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK---------F-PEYGQLSGRK----LEDNRAGER------- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~---------~-~~yg~Ls~~~----~~~~~~g~~------- 241 (574)
|...+.|++.+...++.++|+++|.||... |... + ..|-.++... .++|..|..
T Consensus 280 d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~-----~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 280 DAVTYTSDYFPQLMEMAEKLIKEGKAYVDD-----TPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred CCcccccccHHHHHHHHHHHHHcCCeeecC-----CCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 777889999999999999999999999631 1110 0 0121222110 112322321
Q ss_pred -cccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 -VAVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 -v~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
..++-...| ..|+++.+......+.....| .+.|.++++|..- ....| +..-+=|.|++ .+......+..++
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~vd-D~~~g--IThvlRg~e~~-~~t~~q~~l~~~l 429 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPFV-DALEG--VTHALRSSEYH-DRNAQYYRILEDM 429 (722)
T ss_pred EEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEEE-cccCC--CceEeecHhhh-hChHHHHHHHHHc
Confidence 111111112 257766654322222223344 5677777665211 01112 12222345533 2333344555666
Q ss_pred cCCCCceEEEEeeEEEeCCccccccc-------Cce--------eehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHH
Q 008191 319 CNNSHISYWIHNGFVTIDSEKMSKSL-------GNF--------FTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQ 381 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G~KMSKS~-------Gn~--------i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~ 381 (574)
+.+.| ++ .|.+++.++|.||||++ |-+ .|++.+.. .|.+++||=|++.. .-..+..|+++.
T Consensus 430 g~~~p-~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~ 507 (722)
T PLN02907 430 GLRKV-HI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDK 507 (722)
T ss_pred CCCCC-ee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHH
Confidence 65544 44 45688999999999998 322 24555543 59999999999986 557889999999
Q ss_pred HHHHHHH
Q 008191 382 LESASER 388 (574)
Q Consensus 382 l~~a~~~ 388 (574)
|....+.
T Consensus 508 l~~~nr~ 514 (722)
T PLN02907 508 LWTINKK 514 (722)
T ss_pred HHHHHHH
Confidence 8877654
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=117.27 Aligned_cols=207 Identities=17% Similarity=0.179 Sum_probs=141.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- +.-.++.=++|.|.. .-...+.+.+.++|+.||+. .
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWLGIK-P 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999999886 334577778887732 23346789999999999996 5
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccC
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKE 262 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~ 262 (574)
|-..+.|++.+...+..++|+++|.+|.. + ..|. +|.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~~-------------~-----------~~~~------------~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYVH-------------H-----------RTGD------------KWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeecC-------------C-----------CCCC------------CEEE------
Confidence 65557789999999999999999999980 0 0000 1111
Q ss_pred CCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCccccc
Q 008191 263 GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSK 342 (574)
Q Consensus 263 g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSK 342 (574)
+|.+++.|+.- ....| ++.-+=|.|++ +...-.+....+++..+|. + +|.+++..+|.||||
T Consensus 106 ------------~ptY~lA~vVD-D~~~g--IThVvRG~D~l-~~t~~Q~~l~~aLg~~~P~-~-~~~~hln~~g~kLSK 167 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIEG--ITHSLCTLEFE-DRRPSYYWLCDALRLYRPH-Q-WEFSRLNLTYTVMSK 167 (238)
T ss_pred ------------EeccccceEee-ccccC--CCeEEechhhh-cCCHHHHHHHHHcCCCCCc-e-eEEEEECCCCCCccC
Confidence 25555443211 01122 22333467754 3333445566677666543 3 355788889999999
Q ss_pred ccCc------ee---------ehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH
Q 008191 343 SLGN------FF---------TIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASER 388 (574)
Q Consensus 343 S~Gn------~i---------~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~ 388 (574)
+.+- .+ ++..+.. .+.|++++=|++.. --.++..|+++.|....+.
T Consensus 168 R~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~ 230 (238)
T cd00807 168 RKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRK 230 (238)
T ss_pred cCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 9852 11 3344333 68999999999986 4568999999988765543
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=131.53 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=155.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|.. .| .++.=+||.|. ..-...|.+.+.++|+.||+. +
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar~~--gG---~~iLRiEDTDp-------------~R~~~e~~d~IleDL~WLGl~-w 118 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLADKY--KG---KLVFRFDDTNP-------------SKEKEHFEQAILDDLATLGVS-W 118 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHh--CC---EEEEEEcCCCC-------------cccCHHHHHHHHHHHHHCCCC-C
Confidence 59999999999999999999999852 33 56667777763 223447889999999999996 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----------CCCcccccCc-cc---ccccCCC-----cc
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----------FPEYGQLSGR-KL---EDNRAGE-----RV 242 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----------~~~yg~Ls~~-~~---~~~~~g~-----~v 242 (574)
|. ..+.|++.+...++.++|+++|.||.- +|... -..|-.++.. .+ ..+..|. .+
T Consensus 119 De~~~~QSdr~d~y~e~a~~Li~~G~AY~c-----~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~ 193 (601)
T PTZ00402 119 DVGPTYSSDYMDLMYEKAEELIKKGLAYCD-----KTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETC 193 (601)
T ss_pred CCceeeccccHHHHHHHHHHHHHcCCEEEe-----cCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceE
Confidence 54 457889999999999999999999942 22211 0122222110 00 1111111 10
Q ss_pred -----ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhh
Q 008191 243 -----AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317 (574)
Q Consensus 243 -----~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a 317 (574)
++...-.+..|+++.+......+.-...| .+.|.++++|..- ....| +..-+=|.|+. ++......+..+
T Consensus 194 lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~-dgyPtYdfA~vVD-D~l~g--ITHvlRg~E~l-~~tp~q~~L~~a 268 (601)
T PTZ00402 194 LRAKISVDNENKAMRDPVIYRVNLTPHARQGTKY-KAYPTYDFCCPII-DSVEG--VTHALRTNEYH-DRNDQYYWFCDA 268 (601)
T ss_pred EEEecccCCCCCCccCCEEEEEcCCcccccCCCC-ceeeccCcceeeE-ccccC--CceEeechhhh-hCcHHHHHHHHH
Confidence 11111112357776654211111000112 3567666665211 01112 22223355644 444455566667
Q ss_pred ccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhh-hccChhhHHHHhhcc-CCCCCCCCCHH
Q 008191 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVM-ELYHPLALRLFLIGT-HYRSPINYSVV 380 (574)
Q Consensus 318 ~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l-~~~~~d~lR~~ll~~-~~~~~~~fs~~ 380 (574)
++..+| .+ .|.+.+..+|.||||+.+.- .|+.-+. ..|.++++|=|+... --.++..|+++
T Consensus 269 Lg~~~P-~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~ 346 (601)
T PTZ00402 269 LGIRKP-IV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWS 346 (601)
T ss_pred hCCCCc-eE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHH
Confidence 765544 34 67788888999999998751 1222222 369999999999986 55789999999
Q ss_pred HHHHHHHH
Q 008191 381 QLESASER 388 (574)
Q Consensus 381 ~l~~a~~~ 388 (574)
.|....+.
T Consensus 347 ~L~~~nr~ 354 (601)
T PTZ00402 347 KLWYFNTQ 354 (601)
T ss_pred HHHHHHHH
Confidence 98877654
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=117.49 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +.-.++.-++|.|. ..-...+.+.+.++++.|||. +
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~-----~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dL~wlGl~-~ 67 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK-----HGGKFILRIEDTDQ-------------ERSVPEAEEAILEALKWLGLD-W 67 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEECcCCC-------------CCCchHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999998885 23367777788663 112236778899999999996 5
Q ss_pred CC---------cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccc
Q 008191 183 SV---------EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPAD 253 (574)
Q Consensus 183 d~---------~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~D 253 (574)
|. ....|++.+...++.++|+++|
T Consensus 68 d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g----------------------------------------------- 100 (239)
T cd00808 68 DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG----------------------------------------------- 100 (239)
T ss_pred CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-----------------------------------------------
Confidence 65 4466789999999999999988
Q ss_pred hhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE
Q 008191 254 FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV 333 (574)
Q Consensus 254 f~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v 333 (574)
.|.|.+++.++.-- ...| ++.-+-|.|+. .|.....+...+++.++| .| .|...+
T Consensus 101 -------------------dg~ptY~~a~~vDD-~~~~--ithViRG~D~~-~~t~~q~~l~~aLg~~~p-~~-~h~pll 155 (239)
T cd00808 101 -------------------DGFPTYHLANVVDD-HLMG--ITHVIRGEEHL-SSTPKQILLYEALGWEPP-KF-AHLPLI 155 (239)
T ss_pred -------------------CCCcccccHHHHhH-HhcC--CCEEEEChhhh-hChHHHHHHHHHcCCCCC-ce-Eeeccc
Confidence 12333333332211 1122 33345677755 455566677777766544 35 455665
Q ss_pred -EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC---CCCCCCHHHH
Q 008191 334 -TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR---SPINYSVVQL 382 (574)
Q Consensus 334 -~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~---~~~~fs~~~l 382 (574)
..+|.|||||.|+ .+++.+.+ .+.|++++.|++..... .+.-++.+.+
T Consensus 156 ~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 156 LNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred cCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 5689999999999 68877764 68999999998864332 2234555543
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-11 Score=126.06 Aligned_cols=237 Identities=15% Similarity=0.161 Sum_probs=144.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|. +.=.|+.=|+|.|. ......+.+.+.++|+.||+. .
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~-----~gG~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~-w 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ-----QNEDFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGIS-W 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999886 34457777888774 123346778999999999997 5
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCcccccccCCCc--c
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKLEDNRAGER--V 242 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~~~~~~g~~--v 242 (574)
|--.+.|++.+.-.+++++|+++|.||.- ||... -+ .|-.++.... +..|.. +
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAFAC-----FCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 65667889999999999999999999942 22110 00 1111211100 001111 0
Q ss_pred --ccCC---------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC
Q 008191 243 --AVDS---------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 305 (574)
Q Consensus 243 --~~~~---------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f 305 (574)
.++. .-....||++.|. .|.|.+|++++.- ....| +...+=|.|++
T Consensus 139 R~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA~vVD-D~~mg--IThViRG~d~l- 201 (433)
T PRK12410 139 RLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFACAVD-DMLYD--ISLIIRGEDHV- 201 (433)
T ss_pred EEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCccccccchhc-hhhcC--CCEEEechhhh-
Confidence 0000 0000113333332 4678888765322 11122 22223467754
Q ss_pred ccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC-CCCCCCHHHH
Q 008191 306 PHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR-SPINYSVVQL 382 (574)
Q Consensus 306 pH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~-~~~~fs~~~l 382 (574)
+.....+.+..|++.++|.. |.|...++ .+|+||||+.|. +++.++.+ .|.|++++=|++.-.+. .+--|+.+.+
T Consensus 202 ~~tp~Qi~Ly~aLg~~~pp~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~el 279 (433)
T PRK12410 202 SNTPKQILIREALGYNKEIT-YAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEA 279 (433)
T ss_pred hCcHHHHHHHHHcCCCCCCe-EEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHH
Confidence 22334445667777665443 47878665 589999999986 57777765 69999999998874221 1223555544
Q ss_pred HH
Q 008191 383 ES 384 (574)
Q Consensus 383 ~~ 384 (574)
.+
T Consensus 280 i~ 281 (433)
T PRK12410 280 IE 281 (433)
T ss_pred HH
Confidence 43
|
|
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=133.55 Aligned_cols=254 Identities=19% Similarity=0.086 Sum_probs=159.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|++++...++|- |.=.++.=+||.|.. .-...|.+.+.++|+.||+..+
T Consensus 37 aPsPtG~lHiGhar~alln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 37 PPEPNGYLHIGHAKSILLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999999999985 334677778887732 2334788999999999999743
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCc-cc---ccccCCC----
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGR-KL---EDNRAGE---- 240 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~-~~---~~~~~g~---- 240 (574)
....+.|+|.+...++.++|+++|.||.- ||... ...|-.++.. ++ +.|..|+
T Consensus 99 ~~~~~qS~~~~~y~~~a~~Li~~G~aY~c-----~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g 173 (771)
T PRK14703 99 EHLYYASDYFERMYAYAEQLIKMGLAYVD-----SVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDG 173 (771)
T ss_pred CCceEeecCHHHHHHHHHHHHHcCCcccC-----cCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 34467889999999999999999999963 22110 0112222211 11 1233333
Q ss_pred -cc---ccCCCccC--ccchhhcccccCCCCccccCCcC---cCCCCccchhHHHHhhhCCCceeeeccccccCccchHH
Q 008191 241 -RV---AVDSRKKN--PADFALWKSAKEGEPFWESPWGP---GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE 311 (574)
Q Consensus 241 -~v---~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~---g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~ 311 (574)
.+ ..+-...| ..|+++++......+ ..|. +.|.+++.|..- ....| +..-+-|.|+. .+....
T Consensus 174 ~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~vd-D~l~g--ITHvlRg~E~~-~~~~~~ 245 (771)
T PRK14703 174 AHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPLE-DAIEG--VTHSICTLEFE-NNRAIY 245 (771)
T ss_pred CeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCccccceee-ccccC--CcEEEecHhhh-hccHHH
Confidence 11 11111222 358888875322122 1333 367777665211 11122 22222355533 233334
Q ss_pred HHHHhhccCCCC-ceEEEEeeEEEeCCccccccc-------Ccee--------ehhhhhh-ccChhhHHHHhhcc-CCCC
Q 008191 312 IAQSCAACNNSH-ISYWIHNGFVTIDSEKMSKSL-------GNFF--------TIRQVME-LYHPLALRLFLIGT-HYRS 373 (574)
Q Consensus 312 ~A~~~a~~~~~~-~~~~~h~g~v~~~G~KMSKS~-------Gn~i--------~~~d~l~-~~~~d~lR~~ll~~-~~~~ 373 (574)
..+..++++.++ +.+ ++.+++.+.|.|||||+ |-+- |+..+.+ .|.|++||-|++.. --..
T Consensus 246 ~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~ 324 (771)
T PRK14703 246 DWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT 324 (771)
T ss_pred HHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc
Confidence 455667755433 444 46799999999999998 4331 4555554 69999999999986 4467
Q ss_pred CCCCCHHHHHHHHHH
Q 008191 374 PINYSVVQLESASER 388 (574)
Q Consensus 374 ~~~fs~~~l~~a~~~ 388 (574)
+..++++.|....+.
T Consensus 325 ~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 325 NSTVDIGVLEFAIRD 339 (771)
T ss_pred CceecHHHHHHHHHH
Confidence 889999998887653
|
|
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=127.11 Aligned_cols=255 Identities=18% Similarity=0.149 Sum_probs=158.1
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+|+|. .=-.|.|+|++||||||++++...++|. +.=.++.=++|.|. ..-...|.+.+.++
T Consensus 49 ~gkv~-tRFaPsPtG~LHiGharaalln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~d 109 (574)
T PTZ00437 49 GGKPY-FRFPPEPNGFLHIGHAKSMNLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEM 109 (574)
T ss_pred CCcEE-EEeCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHH
Confidence 34443 3346999999999999999999999986 33456667777762 23445788999999
Q ss_pred HHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----------CCCcccccCcc----cccccCC
Q 008191 174 MVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----------FPEYGQLSGRK----LEDNRAG 239 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----------~~~yg~Ls~~~----~~~~~~g 239 (574)
|+.||+. +|..+..|+|.+.+.++.++|+++|.||.- ||... ...|-.++... .++|..|
T Consensus 110 L~wLGi~-~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C-----~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g 183 (574)
T PTZ00437 110 VKWMGWK-PDWVTFSSDYFDQLHEFAVQLIKDGKAYVD-----HSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQG 183 (574)
T ss_pred HHHcCCC-CCCCCcCchhHHHHHHHHHHHHHcCCEEEc-----CCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhc
Confidence 9999997 677778899999999999999999999953 22211 01111121110 1122222
Q ss_pred -----Ccc---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc---
Q 008191 240 -----ERV---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP--- 306 (574)
Q Consensus 240 -----~~v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp--- 306 (574)
+.| ..+....|+ .|++..+-.....+.=-..| .+.|.++++| ++|=|..|+-|+.-
T Consensus 184 ~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~E 252 (574)
T PTZ00437 184 RYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLE 252 (574)
T ss_pred ccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeech
Confidence 221 112112232 45554432211111111234 4577776655 34445556655541
Q ss_pred ---cchH--HHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh-ccChhhHHHH
Q 008191 307 ---HHEN--EIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME-LYHPLALRLF 365 (574)
Q Consensus 307 ---H~~~--~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~-~~~~d~lR~~ 365 (574)
+.+- |+ ..+++...|. . .+.+-++++|.|||||+... .|+..+.+ .|.|++||=|
T Consensus 253 f~~r~~~y~wl--~~~l~l~~p~-~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f 328 (574)
T PTZ00437 253 FETRRESYFWL--LEELNLWRPH-V-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRF 328 (574)
T ss_pred hhcccHHHHHH--HHHhCCcccc-e-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHH
Confidence 1111 33 2344333222 3 34577889999999999873 45666554 6999999999
Q ss_pred hhcc-CCCCCCCCCHHHHHHHHHH
Q 008191 366 LIGT-HYRSPINYSVVQLESASER 388 (574)
Q Consensus 366 ll~~-~~~~~~~fs~~~l~~a~~~ 388 (574)
++.. --+++..++++.|.+..+.
T Consensus 329 ~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 329 CELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHHhCCCccceEeeHHHHHHHHHH
Confidence 9986 4467889999998887654
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=124.28 Aligned_cols=246 Identities=17% Similarity=0.122 Sum_probs=146.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +. =.|+.=|+|.|. ......+.+.+.++|+.||+. +
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar~--~g---G~fiLRIEDTD~-------------~R~~~~~~~~i~~~L~WLGl~-w 70 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFARH--HN---GKFLLRIEDTDK-------------ERSTKEAVEAIFSGLKWLGLD-W 70 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cC---CEEEEEECCCCc-------------cccChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999984 23 346667777763 224457889999999999997 4
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCc----ccccCcccccccCCCc--
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEY----GQLSGRKLEDNRAGER-- 241 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~y----g~Ls~~~~~~~~~g~~-- 241 (574)
| --.+.|++.+.-.++.++|+++|.+|.- ||... .+.| -.++.. ....|..
T Consensus 71 De~py~QSeR~~~Y~~~a~~Li~~G~AY~C-----fCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~---~~~~~~~~~ 142 (513)
T PRK14895 71 NGEVIFQSKRNNLYKEAALKLLQNGKAYYC-----FTRQEEIERQRQQALENKQHFIFNSEWRDKDPS---IYPTDIKPV 142 (513)
T ss_pred CCCceeEeCcHHHHHHHHHHHHHcCCeEEe-----cCcHHHHHHHHHhhhccCCCCCCChhhcccChh---hhhcCCCee
Confidence 5 3456789999999999999999999942 22221 0111 111110 0000110
Q ss_pred cccCCCccCccchhhcccccCCCCcccc----C----CcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHH
Q 008191 242 VAVDSRKKNPADFALWKSAKEGEPFWES----P----WGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 242 v~~~~~k~~~~Df~lwk~~~~g~~~w~~----~----WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A 313 (574)
+.+..... .-..|...-.|++.++. + -..|.|.+|..+... ....|.+ --+-|.|++ .|....++
T Consensus 143 iR~k~p~~---~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVD-D~~m~it--hVIRG~d~~-~~t~~q~~ 215 (513)
T PRK14895 143 IRLKTPRE---GSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVD-DHDMGIT--HIIRGDDHL-TNAARQLA 215 (513)
T ss_pred EEEEcCCC---CceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHH-HHhcCCC--EEEECchHh-hhHHHHHH
Confidence 00000000 00011111112221111 1 124668888765432 1223433 333788854 33344556
Q ss_pred HHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCCCCCCCCHHHHHHH
Q 008191 314 QSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYRSPINYSVVQLESA 385 (574)
Q Consensus 314 ~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~a 385 (574)
...+++..+| .+.|..+|+ .+|.||||+.|. +.+.++.+ .|-|++++=|++.- .+...--|+.+.+.+.
T Consensus 216 l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~ 288 (513)
T PRK14895 216 IYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDW 288 (513)
T ss_pred HHHHcCCCCC--eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhh
Confidence 6667765443 458889988 799999999998 46777665 69999999888853 2333335777766543
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=124.48 Aligned_cols=257 Identities=18% Similarity=0.122 Sum_probs=146.3
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|- +.=.++.=+||-|. ..-...|.+.+.++|+.||+...
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY-----YNGTCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999985 33456777788774 12334788999999999999743
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCcc-c---ccccCCCc---
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGRK-L---EDNRAGER--- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~~-~---~~~~~g~~--- 241 (574)
+...+.|+|.+...++.++|+++|.||.- ||... ...|-.++... + +.|..|+.
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY~c-----~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAYVD-----ELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEEee-----cCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 55567889999999999999999999963 22110 00122222110 1 12333331
Q ss_pred --c---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 242 --V---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 242 --v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
+ .++....|+ .|+++.+-.....+-=-..| ...|.++++|..- ....| +..-.=|.|+. .+....-+.
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~~vd-D~l~g--ITHviRg~E~~-~nt~~Y~~~ 217 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTHCIS-DAMEN--ITHSLCTLEFQ-DNRRLYDWV 217 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCceeeh-hccCC--CceEeecHhhh-hcHHHHHHH
Confidence 1 111111122 45554433211111000122 1266666655211 11112 11111234422 111111122
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh-ccChhhHHHHhhccCCC-CCCCC
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME-LYHPLALRLFLIGTHYR-SPINY 377 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~-~~~~d~lR~~ll~~~~~-~~~~f 377 (574)
...++....+.+ ++.+++.++|.||||+++.. .|+..+.+ .|.|++||=|++..... .+...
T Consensus 218 ~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~ 296 (522)
T TIGR00440 218 LDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNI 296 (522)
T ss_pred HHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCce
Confidence 323332212333 25678889999999999874 37777775 69999999999986544 33345
Q ss_pred CHHHHHHHHHH
Q 008191 378 SVVQLESASER 388 (574)
Q Consensus 378 s~~~l~~a~~~ 388 (574)
++..+.+..+.
T Consensus 297 e~~~l~~~~r~ 307 (522)
T TIGR00440 297 EVVRLESCIRE 307 (522)
T ss_pred ehhhHHHHHHH
Confidence 66666665543
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=121.76 Aligned_cols=239 Identities=19% Similarity=0.200 Sum_probs=143.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|- +.=.|+.=|+|.|. .-....+.+.+.++|+.|||. .
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WLGl~-w 111 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ARSTKESEEAVLRDLKWLGLD-W 111 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCC-C
Confidence 4889999999999999999999884 33457777888774 123447789999999999996 4
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCC----cccccCccc-c
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPE----YGQLSGRKL-E 234 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~----yg~Ls~~~~-~ 234 (574)
|.- .+.|++.+.-.++.++|+++|.||. .||... .+. |-.++.... +
T Consensus 112 Degp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~-----CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~ 186 (535)
T PLN02627 112 DEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP-----CFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQA 186 (535)
T ss_pred CcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee-----ccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHH
Confidence 533 3567899999999999999999994 122211 011 111221100 0
Q ss_pred cccCCCccc--cCC------------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 235 DNRAGERVA--VDS------------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 235 ~~~~g~~v~--~~~------------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
....|.... +.. .-....||+++|. .|.|.+|+.|+.- ....| +
T Consensus 187 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~-------------DG~PtY~fA~vVD-D~~mg--I 250 (535)
T PLN02627 187 ELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRS-------------NGQPVYNFCVAVD-DATMG--I 250 (535)
T ss_pred HHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEec-------------CCCccccccceec-ccccC--C
Confidence 001111100 000 0001123333332 4678888766321 01112 2
Q ss_pred eeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR 372 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~ 372 (574)
...+=|.|++ +.....+.+..|++..+| . |.|...++. +|+||||+.|. +++.++.+ .|.|++++=|++.-.+.
T Consensus 251 THViRG~D~l-~nTpkQi~ly~aLg~~~P-~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws 326 (535)
T PLN02627 251 THVIRAEEHL-PNTLRQALIYKALGFPMP-R-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWN 326 (535)
T ss_pred cEEEechhhh-cChHHHHHHHHHcCCCCC-e-EEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 2223366643 222233455567766655 3 478888775 78899999876 57777765 69999999888764332
Q ss_pred ---CCCCCCHHHHHHH
Q 008191 373 ---SPINYSVVQLESA 385 (574)
Q Consensus 373 ---~~~~fs~~~l~~a 385 (574)
.+--|+.+.+.+.
T Consensus 327 ~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 327 DGTENEIFTLEELVEK 342 (535)
T ss_pred CCCCCCcCCHHHHHHh
Confidence 2334777666544
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=115.33 Aligned_cols=219 Identities=16% Similarity=0.090 Sum_probs=133.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|- +.-.++.=|+|.|.. .-...+.+.+.++|+.||+. .
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~-----~~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 71 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARA-----HGGRWLLRIEDIDPP-------------REVPGAADAILADLEWLGLH-W 71 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCCC-------------ccchHHHHHHHHHHHHCCCC-C
Confidence 6999999999999999999888876 345677788888741 12346789999999999997 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeec---------C------ceeecCCCCCCcccccCccc-------------
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVD---------G------DVYFSVDKFPEYGQLSGRKL------------- 233 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~---------~------~v~f~~~~~~~yg~Ls~~~~------------- 233 (574)
|- ..+.|++.+...++.++|+++|.+|.-. . ..-|+- .|-.++....
T Consensus 72 De~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g----~cr~~~~~~~~~~~iRlk~~~~~ 147 (299)
T PRK05710 72 DGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPG----TCRDLLHGPRNPPAWRLRVPDAV 147 (299)
T ss_pred CCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCC----ccccCCccccCCceEEEEcCCCc
Confidence 53 4467899999999999999999999420 0 001111 1111211000
Q ss_pred ---ccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchH
Q 008191 234 ---EDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN 310 (574)
Q Consensus 234 ---~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~ 310 (574)
.+...|+.. . .......||++++. .|.|.+|++|+.- ....| +..-+=|.|++ +....
T Consensus 148 ~~~~D~~~G~~~-~-~~~~~~~D~Vi~R~-------------dg~ptY~lA~vVD-D~~~g--IThVvRG~D~l-~~t~~ 208 (299)
T PRK05710 148 IAFDDRLQGRQH-Q-DLALAVGDFVLRRA-------------DGLFAYQLAVVVD-DALQG--VTHVVRGADLL-DSTPR 208 (299)
T ss_pred eEEEEecceeEe-e-CCCCCCCCEEEEec-------------CCCccccchhHHh-cccCC--CCEEEeChhhh-hcCHH
Confidence 000001000 0 00001235555543 3678888876432 11233 22233467754 33344
Q ss_pred HHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 311 EIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 311 ~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
.+.+..+++.++| .| .|...++ .+|+||||+.|. ..+++ ..+.|+ +..++..-
T Consensus 209 Q~~l~~aLg~~~P-~y-~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 209 QIYLQQLLGLPTP-RY-LHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred HHHHHHHcCCCCC-eE-EEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 4556667766654 34 7888774 689999999876 45555 688888 66665553
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=127.18 Aligned_cols=277 Identities=17% Similarity=0.147 Sum_probs=160.8
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
++.+||...-++.+.- .+|+|.. =-.|.|+|++||||+|++++-..++|.. .=.++.=+||-|.
T Consensus 245 ~~~~~~~~~~~~hl~~-t~g~V~t-RFaPsPtG~LHiGharaallN~~~Ar~~-----~G~~~LRieDTdp--------- 308 (788)
T PLN02859 245 LRPSNTKEILEKHLKA-TGGKVYT-RFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGCCYLRFDDTNP--------- 308 (788)
T ss_pred ccccCcHHHHHHHHhh-cCCceEE-EeCCCCCCcccHHHHHHHHHHHHHHHHh-----CCEEEEEecCCCC---------
Confidence 4455665555555544 3455432 2369999999999999999999999873 3356667777762
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC-----------CCC
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK-----------FPE 224 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~-----------~~~ 224 (574)
..-...|.+.+.++++.||+. ++...+.|+|.+.+.+...+|+++|.||.- ||... ++
T Consensus 309 ----~r~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C-----~ct~eei~~~R~~~~~sp- 377 (788)
T PLN02859 309 ----EAEKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSP- 377 (788)
T ss_pred ----CccchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeEec-----cCCHHHHHHHHhhhccCC-
Confidence 224457889999999999996 566678889998888899999999999963 22210 11
Q ss_pred cccccC----cccccccC-----CCcc---ccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhh
Q 008191 225 YGQLSG----RKLEDNRA-----GERV---AVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYL 290 (574)
Q Consensus 225 yg~Ls~----~~~~~~~~-----g~~v---~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~l 290 (574)
|-..+. ...++|.. |+.+ .++....| -.|++..+-.....+-=...|-+ .|.+++.|..- ....
T Consensus 378 ~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i-yPtYdFA~~vd-D~le 455 (788)
T PLN02859 378 WRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI-YPSYDYAHCIV-DSLE 455 (788)
T ss_pred CCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEE-Eeccccccccc-cccc
Confidence 111110 00111221 2211 11111112 13554433221111000023322 67776654211 1111
Q ss_pred CCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh
Q 008191 291 GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME 355 (574)
Q Consensus 291 G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~ 355 (574)
| +..-.-|.|+. .+..-..-+..+++..+|. + .|.+-+.++|.||||+++.. .|+..+.+
T Consensus 456 g--ITHvLRg~E~~-~~~~~y~wl~~aLg~~~P~-~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRr 530 (788)
T PLN02859 456 N--ITHSLCTLEFE-TRRASYYWLLDSLGLYQPY-V-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRR 530 (788)
T ss_pred C--CceEeechhhh-cCCHHHHHHHHHcCCCCCc-E-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHH
Confidence 2 11112244422 2233333455666655443 3 57788889999999999764 35666654
Q ss_pred -ccChhhHHHHhhccCCC-CCC-CCCHHHHHHHH
Q 008191 356 -LYHPLALRLFLIGTHYR-SPI-NYSVVQLESAS 386 (574)
Q Consensus 356 -~~~~d~lR~~ll~~~~~-~~~-~fs~~~l~~a~ 386 (574)
.|.|++||=|++...+. .+. .|+++.|..+.
T Consensus 531 rG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 531 RGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHI 564 (788)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhC
Confidence 69999999999986443 344 69999985443
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-10 Score=120.09 Aligned_cols=230 Identities=20% Similarity=0.211 Sum_probs=134.5
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
..|.|+|++||||||++++-..++|. |.=.|+.=++|.|. .--...+.+.+.++|+-||+.
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar~-----~~G~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WLGl~- 74 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYARK-----YGGKFILRIEDTDP-------------ERETPEAEDAILEDLEWLGLD- 74 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CCCCHHHHHHHHHHHHhcCCC-
Confidence 46999999999999999999999987 33346667777773 222336778999999999997
Q ss_pred CCC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------C-Cc----ccccCcccccccC-CC
Q 008191 182 PSV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------P-EY----GQLSGRKLEDNRA-GE 240 (574)
Q Consensus 182 ~d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~-~y----g~Ls~~~~~~~~~-g~ 240 (574)
.|- ..+.|++.+...+++++|+++|.||.- ||.... + .| -.|... +.+.. |+
T Consensus 75 wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c-----~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~--~~~~~~~~ 147 (472)
T COG0008 75 WDEGPYYQSERFDIYYEYAEKLIEKGKAYVC-----YCTPEELEEMRELRGALGEPPPSYDRDERNLTLF--EKMADLGE 147 (472)
T ss_pred CCCceeehhhhHHHHHHHHHHHHHCCCeEEe-----cCCHHHHHHHHHHHhhcCCCCCCCCchhhccchH--HHHhhccc
Confidence 565 578899999999999999999999952 333210 0 11 111110 00111 11
Q ss_pred ---c-c--ccCCCccCccchhhcccccCCCCcccc-CCc------CcCCCCccchhHHHHhhhCCCceeeeccccccCcc
Q 008191 241 ---R-V--AVDSRKKNPADFALWKSAKEGEPFWES-PWG------PGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 307 (574)
Q Consensus 241 ---~-v--~~~~~k~~~~Df~lwk~~~~g~~~w~~-~WG------~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH 307 (574)
. + ..+....++ .|.-|-. |++.+.. -++ .|.|.++++|.. .....| +..-+=|.|++ ..
T Consensus 148 ~~~~viR~k~~~~~~~~-~~~D~v~---g~i~~~~~~~~dv~~r~dg~ptY~favvv-DD~~mg--ITHviRG~d~~-~n 219 (472)
T COG0008 148 GGPAVVRLKIPMAHPGP-VFRDLVR---GRIVFAPKHPDFVILRYDGYPTYNFAVVV-DDHLMG--ITHVLRGEDHL-DN 219 (472)
T ss_pred CCCeEEEEeCCCCCCCC-cccccee---eeEecCccCCcceeecCCCCcccceeeee-chhhcC--CceEEechhhc-cC
Confidence 0 0 111001111 1111110 1111111 111 244555554321 111223 22223477755 33
Q ss_pred chHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhh-hccChhhHHHHhhc
Q 008191 308 HENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVM-ELYHPLALRLFLIG 368 (574)
Q Consensus 308 ~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l-~~~~~d~lR~~ll~ 368 (574)
....+.+..+++.++|. | .|.+.++. +|+|||||.| .+.+.+.. ..|.+.+++-++..
T Consensus 220 t~~q~~l~~~lg~~~P~-~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 220 TPRQIWLYEALGWPPPV-Y-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred CHHHHHHHHHcCCCCCc-E-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 44555666777666543 4 68899887 4669999999 66666543 57888888887754
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-10 Score=111.31 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=73.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- +.=.++.=|+|.|.. .....+.+.+.++|+.|||. +
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~-w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLH-W 66 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999984 334577778888741 12336778999999999997 5
Q ss_pred CCcc-cccccHHHHHHHHHHHHHCCceee
Q 008191 183 SVEP-RVSDHMPHIIDMITQILDNGFAYR 210 (574)
Q Consensus 183 d~~~-r~s~~~~~i~~~i~~L~~kG~aY~ 210 (574)
|--+ +.|++.+.-.+++++|+++|.+|.
T Consensus 67 De~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 5444 788999999999999999999994
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=110.36 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- ..| .++.=++|.|.. .. ...+.+.+.++|+.||+. +
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar~--~~G---~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~-~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFARK--YGG---KFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLE-W 67 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHHH--TTS---EEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT----
T ss_pred CCCCCCCcccchhHHHHHHHHHHhc--cCc---eEEEeccccccc---------cc----hhhHHHHHHhheeEEEEe-c
Confidence 5899999999999999999999984 334 466677887742 22 236778899999999997 5
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceee
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYR 210 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~ 210 (574)
| -..+.|++.+...+++++|+++|.+|.
T Consensus 68 D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQSDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4 455678999999999999999999995
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=88.53 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=104.6
Q ss_pred ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh-hh---------cCCCCChhHHHHHH
Q 008191 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALSLLDA-AA---------LKDSIPPDTVTSIN 424 (574)
Q Consensus 356 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~~~~~-~~---------~~~~~~~~l~~~l~ 424 (574)
..|.+++||++|+....++++|+++.+...... .-++.++..|+...+.+... .. ...+.+..++..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 467899999999999999999999997766543 22566666777666555321 00 01123455777788
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 425 KFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 425 ~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
.+.+.+..++ .+.+++.++.++.+|...+|.|++....- ....|+.++..+..++...+.+|||.|
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~ 152 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEA 152 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8888889988 88999999999999999999999877521 134688899999999999999999976
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-07 Score=79.48 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIND 456 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~ 456 (574)
|+++.+....|.+.|+++.+.............+.....+.+++..+.++.+++.++| ++++++.|+..+++++..+|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~ 79 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYK 79 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHH
Confidence 5778888888888888887654321110000001123456788999999999999999 999999999999999999999
Q ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 457 LLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
|++...+ ....+...++.++.+| ||+|+.++++|+.
T Consensus 80 ~~~~~~p--------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~ 116 (117)
T cd07958 80 YKKKDAQ--------HAAVLREALETLVLLLAPFAPHIAEELWEE 116 (117)
T ss_pred hhccccc--------hHHHHHHHHHHHHHHHcccchHHHHHHHhh
Confidence 9875432 2345667777777777 8999999988764
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-07 Score=81.63 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-h---hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDA-A---ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~-~---~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
||++.+..+.+.+.++|+....+......... . +.....+.++...++++.+.+.++| +.+++.+|+..+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 78899999999999999988765331111111 0 1112345678888999999999999 99999999999999997
Q ss_pred --HHHHHHHhhhcchh---hh-hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 453 --TINDLLHTRKGKKQ---AM-RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 453 --~~N~~~~~~~~~~~---~~-~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
.+|+|++..++|.. .. ....+..+...++.++.+| ||+|+.++++|++
T Consensus 80 ~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~ 134 (135)
T cd07962 80 NDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQR 134 (135)
T ss_pred HHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhc
Confidence 79999998876521 11 2334556667777777777 8999999888754
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=71.95 Aligned_cols=60 Identities=38% Similarity=0.579 Sum_probs=43.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHH
Q 008191 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495 (574)
Q Consensus 429 ~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~ 495 (574)
+|.+||+||||||.|++.|+++++.+|+..... ....+..+...++.+..+|||....++
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~-------~~~~~~~~~~~l~~~~~vLGl~~~~~~ 60 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALESN-------DKEDLEALAAALRKLLDVLGLLQEDPE 60 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHCCT-S-S-HH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHhcCcCCCCCHH
Confidence 488999999999999999999999999933222 123345567888899999999865544
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=76.33 Aligned_cols=114 Identities=10% Similarity=0.027 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL-SDPLKTIN 455 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l-~~l~~~~N 455 (574)
|+.+.+....+.+.|+++.+..... ...+.......+++++..++++.+++.++| ++++++.|++.+ +++.+.+|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~~~~~~~~~~~ 76 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKEGLYELQNDLD 76 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766554211 100111223456889999999999999999 899999999997 99999999
Q ss_pred HHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 456 DLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
.|++..+++ .....+...++.++.+| ||+|+.++++|+.
T Consensus 77 ~Y~~~~~~~------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~ 116 (117)
T cd07959 77 WYRERGGAG------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHE 116 (117)
T ss_pred HHHHHhCcc------chHHHHHHHHHHHHHHHcCcchHhHHHHHhh
Confidence 998765532 11234566777777777 8999999998864
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.8e-06 Score=75.10 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhHHHHHHHHHHHHHHHhh
Q 008191 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ------AMRLESLAALEKTIRNVLTV 486 (574)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~------~~~~~~l~~~~~~l~~~l~i 486 (574)
...+.++...++++.+++.++| +++++++|++.++++++.+|+|++..+++.. +.....+..+...++.++.+
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~l 113 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAIL 113 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999 8999999999999999999999987775421 11233455666677777777
Q ss_pred h-ccccccHHHHHHH
Q 008191 487 L-GLMSTGYSEVLLQ 500 (574)
Q Consensus 487 L-Gi~p~~~~~i~~~ 500 (574)
| ||+|+.++++|+.
T Consensus 114 L~P~~P~~aeei~~~ 128 (129)
T cd07957 114 LSPFMPETAEKILDQ 128 (129)
T ss_pred hcCCCChHHHHHHHh
Confidence 7 8999999988764
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=80.34 Aligned_cols=125 Identities=17% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP 450 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l 450 (574)
|+.+.+.+..+.+.++||+++.+...+...... ......+++++..++++.+.+.++| ++++++.|+..++++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 567888999999999999887765443332110 1123346789999999999999999 899999999999999
Q ss_pred HH--HHHHHHHhhhcch------hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 451 LK--TINDLLHTRKGKK------QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 451 ~~--~~N~~~~~~~~~~------~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+. .+|.|++..+++. ...+......+..+++.++.+| ||+|+.++++|+.+.
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~ 140 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcc
Confidence 95 6699999877531 1122233445566777888887 899999999999885
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=88.66 Aligned_cols=241 Identities=21% Similarity=0.259 Sum_probs=136.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|.|.+|||-+|+++.-.+++|- +.=.|+--+-|-|.+ -++..-.+.+.++|.-+||. +
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk-----~gGkFiLRiEDTDq~-------------R~v~gs~e~i~~~L~w~nl~-~ 99 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK-----KGGKFILRIEDTDQK-------------RLIRGSEEAIYEDLKWANLD-W 99 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh-----cCCeEEEEecccccc-------------ccccchHHHHHHHHHhcCCC-c
Confidence 4889999999999999877766664 344566666666643 12233346788999999996 6
Q ss_pred CCccccc---------ccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCC----cccccCccccc
Q 008191 183 SVEPRVS---------DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPE----YGQLSGRKLED 235 (574)
Q Consensus 183 d~~~r~s---------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~----yg~Ls~~~~~~ 235 (574)
|--|++. +-.+.-.+..++|++.|.||. .||... -+. |..++......
T Consensus 100 DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr-----CFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~ 174 (524)
T KOG1149|consen 100 DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR-----CFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ 174 (524)
T ss_pred ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE-----eccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH
Confidence 7777664 333445688999999999995 344331 111 22343322222
Q ss_pred c-cCCCcccc--CCCccCc--cchhhcccccCCCCccccC--C-------cCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 236 N-RAGERVAV--DSRKKNP--ADFALWKSAKEGEPFWESP--W-------GPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 236 ~-~~g~~v~~--~~~k~~~--~Df~lwk~~~~g~~~w~~~--W-------G~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+ ..|....+ ...+++| .|.+. |.+.|... - ..|.|.+|++|. +|=|.+|+
T Consensus 175 ~lakg~pf~iRFrl~~~~~~f~DLvy------G~v~~~~d~~~gD~VvmKSDgfPTYHfAnV----------VDDh~M~I 238 (524)
T KOG1149|consen 175 KLAKGTPFTIRFRLPKESPPFTDLVY------GKVNHNVDSNEGDPVVMKSDGFPTYHFANV----------VDDHLMGI 238 (524)
T ss_pred HHhcCCCeeEEEecCCCCCChhhhhh------hhhhccccccCCCcEEEecCCCcceeeeee----------ecchhcch
Confidence 1 12322111 1111111 11111 11112111 1 247899998763 34455555
Q ss_pred cccCccch------HHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc---C
Q 008191 302 DLVFPHHE------NEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT---H 370 (574)
Q Consensus 302 Dl~fpH~~------~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~---~ 370 (574)
-|+--.-| -.+..-.|++..|| ++ .|--.++ .+|.|.||+.|. +.+..+.+ .|=|+++==|++.. .
T Consensus 239 sHViRGeEWlpST~KH~lLYkAfgW~pP-kF-aHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~ 315 (524)
T KOG1149|consen 239 SHVIRGEEWLPSTLKHILLYKAFGWQPP-KF-AHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGF 315 (524)
T ss_pred hheeecchhccccHHHHHHHHHhCCCCC-ce-eeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCc
Confidence 54332222 22344455555544 34 5544443 489999999998 45555554 67788877676663 3
Q ss_pred CCCCCCCCHHHHHHHH
Q 008191 371 YRSPINYSVVQLESAS 386 (574)
Q Consensus 371 ~~~~~~fs~~~l~~a~ 386 (574)
....--|+.+.|.+.-
T Consensus 316 ~~~~~f~sl~eLieqF 331 (524)
T KOG1149|consen 316 RTENEFFSLEELIEQF 331 (524)
T ss_pred ccccccccHHHHHHHh
Confidence 3455567877776653
|
|
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-06 Score=78.18 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=92.4
Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHH--HHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Q 008191 377 YSVVQLESASE-RIFYIYQTLHDCEK--ALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL 447 (574)
Q Consensus 377 fs~~~l~~a~~-~l~~l~~~l~~~~~--~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l 447 (574)
||++.++...+ .+.+|||+++.+.. .+...... ......|++++..++++.+.+.++| ++++++.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 78899999888 78899999876643 22211100 1124567899999999999999999 899999999999
Q ss_pred HHHHHHH-HHHHHhhhc----c-hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 448 SDPLKTI-NDLLHTRKG----K-KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 448 ~~l~~~~-N~~~~~~~~----~-~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
++++... +.|++..+. . ....+......+..++..++.+| ||+|+.+|++|+.+..
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9999866 667776442 1 01122334445667777888887 8999999999998853
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.5e-06 Score=61.94 Aligned_cols=55 Identities=40% Similarity=0.485 Sum_probs=42.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008191 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489 (574)
Q Consensus 429 ~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi 489 (574)
+|.+||+||||||.|++.++++++.+|++++... . ...+..+...+..++.+||+
T Consensus 1 ~f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~--~----~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAV--D----AEELAALAALLRALGGVLGL 55 (56)
T ss_pred ChHHHhhcccCcHHHHHHHHHHHHHHHHHhhccc--C----HHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999999999999885321 0 11234456677778888887
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=83.47 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
+|-|+|++|||||+.+++ .-|.... |+=..++-+||- .|..=.++|++.+.+|+..|||. +
T Consensus 206 PPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~LgIk-p 266 (712)
T KOG1147|consen 206 PPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDT-------------NPAKENEEFEDVILEDLSLLGIK-P 266 (712)
T ss_pred CCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCC-------------CcchhhHHHHHHHHHHHHHhCcC-c
Confidence 688999999999998764 4444332 333455556653 34444568999999999999996 8
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecC
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDG 213 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~ 213 (574)
|.++.+|+|-+.|.++..+|+..|-||..+.
T Consensus 267 d~~TyTSDyF~~i~dycv~likeGKAYvDDT 297 (712)
T KOG1147|consen 267 DRVTYTSDYFDEIMDYCVKLIKEGKAYVDDT 297 (712)
T ss_pred ceeeechhhHHHHHHHHHHHHhcCcccccCC
Confidence 9999999999999999999999999998653
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=76.10 Aligned_cols=80 Identities=20% Similarity=0.073 Sum_probs=47.7
Q ss_pred chhHHHHhhhCCCceeeeccccccCccchHHHHHHhhcc------CCCCceEEEEeeEEE----eCCcccccccCc-eee
Q 008191 281 ECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAAC------NNSHISYWIHNGFVT----IDSEKMSKSLGN-FFT 349 (574)
Q Consensus 281 ecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~------~~~~~~~~~h~g~v~----~~G~KMSKS~Gn-~i~ 349 (574)
..+-|+...+=...|+.++|.|+. +|++.-.-....++ ...|.- +|+.++- ++|+|||||.+| .|.
T Consensus 127 YP~lqaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~--l~~~~~~~l~gl~~~KMSKS~~~s~I~ 203 (328)
T TIGR00233 127 YPVLQAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES--LISKFFPRLMGLSGKKMSKSDPNSAIF 203 (328)
T ss_pred chHHHHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh--hhccccCCCCCCCCCcCCCCCCCCeEe
Confidence 334555555656788999999986 66654333333332 122332 3444421 346799999997 887
Q ss_pred hhhhhhccChhhHHHHhhc
Q 008191 350 IRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 350 ~~d~l~~~~~d~lR~~ll~ 368 (574)
+.| +++.++=-+.+
T Consensus 204 L~D-----~~e~I~~KI~~ 217 (328)
T TIGR00233 204 LTD-----TPKQIKKKIRK 217 (328)
T ss_pred ecC-----CHHHHHHHHHh
Confidence 766 45556555554
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.5e-05 Score=68.97 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH-HHHH-HHHHHhhhcch-----hhhhHHHHHHHHHHHHHHHhhh-
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP-LKTI-NDLLHTRKGKK-----QAMRLESLAALEKTIRNVLTVL- 487 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l-~~~~-N~~~~~~~~~~-----~~~~~~~l~~~~~~l~~~l~iL- 487 (574)
|++++..++++.+.+.++| ++|++..|+..++++ ...+ |.|++..+++. ...+. +...+..+++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccC
Confidence 3578899999999999999 899999999999997 5666 99999877431 11233 5566777888888887
Q ss_pred ccccccHHHHHHHH
Q 008191 488 GLMSTGYSEVLLQL 501 (574)
Q Consensus 488 Gi~p~~~~~i~~~l 501 (574)
||+|+.++++|+.+
T Consensus 79 P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 79 PFMPFIAEEIWQRL 92 (153)
T ss_dssp TTSHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHh
Confidence 89999999999766
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=79.35 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
+..++.+||.|+.. |...-.=...-.+...+ +-++.-.+ ..+|.|||||.||.|++.| +..+|..++=++++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 46789999999874 43332222222333332 22332333 3589999999999999877 345677777666654
|
|
| >cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=61.19 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HH
Q 008191 379 VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI-ND 456 (574)
Q Consensus 379 ~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~-N~ 456 (574)
++.|.++.+.+.+|++.+.++. . . .+..+.++|.++|+||||||.|++.|+++++.+ |.
T Consensus 1 ~e~L~~A~~~l~rl~~~l~~~~------------~--~-----~~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~ 60 (81)
T cd07955 1 DEVLADAEARLARWRSAVALPD------------G--P-----DAEALVARLREALADDLDTPKALAALDAWAREALSR 60 (81)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc------------c--c-----cHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhc
Confidence 3678899999999988776542 0 0 123567899999999999999999999999887 54
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC. |
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.7e-05 Score=77.01 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=44.8
Q ss_pred EEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcC-Cccc-cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 100 YVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRN-FTDV-DDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 100 y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~-~dD~-g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
..||--|.| .+||||.-+ ...+.+++ ..|+++.++.+ .+-. |++.=+..++.-.+ .+-+.++...+.+++.+
T Consensus 2 iy~G~~PTg~~lHlGh~~~---l~~~~~lq-~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~-~~~i~~n~~~~~~~~~a 76 (273)
T cd00395 2 LYCGIDPTADSLHIGHLIG---LLTFRRFQ-HAGHRPIFLIGGQTGIIGDPSGKKSERTLND-PEEVRQNIRRIAAQYLA 76 (273)
T ss_pred eEEeEcCCCCCccHHHHHH---HHHHHHHH-HCCCCEEEEEecCceeeCCCCCccccccCCC-HHHHHHHHHHHHHHHHH
Confidence 357778889 799999554 44455544 47999887665 1111 22210111111123 34555667888889999
Q ss_pred cCCC
Q 008191 177 LHCL 180 (574)
Q Consensus 177 L~I~ 180 (574)
+|+.
T Consensus 77 ~g~d 80 (273)
T cd00395 77 VGIF 80 (273)
T ss_pred hcCc
Confidence 9984
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00041 Score=60.30 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 008191 380 VQLESASERIFYIYQTLHDCEKALSLLDAA---ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIND 456 (574)
Q Consensus 380 ~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~ 456 (574)
+.+....+...++++.+..+.......... ......+.+++..++++.+.+.++| ++++++.|++.+++++..+|+
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 80 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQELFKFTNELNW 80 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccH
Confidence 345555555555555554433222111000 0112346789999999999999999 899999999999999999999
Q ss_pred HHHhhhcc
Q 008191 457 LLHTRKGK 464 (574)
Q Consensus 457 ~~~~~~~~ 464 (574)
|++..+++
T Consensus 81 y~~~~~pw 88 (117)
T cd07375 81 YLDELKPA 88 (117)
T ss_pred HHHHhhHH
Confidence 99866654
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00036 Score=73.98 Aligned_cols=75 Identities=28% Similarity=0.304 Sum_probs=46.9
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.....+|--|.|.+||||. +....++++++ .|++|++.. .|+|- ... + +.+++++ +++..++..++
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~---~~~~~~~~lQ~-~g~~~~i~I-aD~ha--~~~---~-~~~~e~~-~~~~~~~~~~~ 131 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHK---MVFDELKWHQE-FGANVYIPI-ADDEA--YAA---R-GLSWEET-REWAYEYILDL 131 (368)
T ss_pred CCCeEEEEccCCCCCccHHHH---HHHHHHHHHHh-cCCCEEEEe-cchHH--Hhc---C-CCCHHHH-HHHHHHHHHHH
Confidence 334455667777799999995 34555555555 898876553 33332 111 1 4555554 45666688899
Q ss_pred HhcCCCC
Q 008191 175 VDLHCLP 181 (574)
Q Consensus 175 ~~L~I~~ 181 (574)
-++|+.+
T Consensus 132 lA~G~Dp 138 (368)
T PRK12285 132 IALGFDP 138 (368)
T ss_pred HHhCCCc
Confidence 9999963
|
|
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=64.22 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hh-hhhHHHHHHHHHHHHHHHhhhcc
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQ-AMRLESLAALEKTIRNVLTVLGL 489 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~-~~~~~~l~~~~~~l~~~l~iLGi 489 (574)
+..+...+..+...+..++ .+++++.++.++.+|+..+|+|++..+.. .. ..|+.++..+..++..++.+|||
T Consensus 35 e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~yL~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi 113 (119)
T PF05746_consen 35 ERELLKQLARFPDVLEKAA-KDLEPHKLCDYLYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGI 113 (119)
T ss_dssp HHHHHHHHCTHHHHHHHHH-HHT-CHHHHHHHHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567788888999999999 99999999999999999999999987721 12 56889999999999999999999
Q ss_pred cc
Q 008191 490 MS 491 (574)
Q Consensus 490 ~p 491 (574)
.|
T Consensus 114 ~~ 115 (119)
T PF05746_consen 114 EP 115 (119)
T ss_dssp --
T ss_pred Cc
Confidence 76
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=75.14 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=47.3
Q ss_pred EEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCC-ccc-cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 100 YVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF-TDV-DDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 100 y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~-dD~-g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
..||--|.| .+||||.-+ .-.+.|.++ .|++|+++.+= +-. |++.=+..++.+.+++++ .++...+.+++.+
T Consensus 3 iy~G~~PTg~~lHLG~~~~---~~~~~~lq~-~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~a 77 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVP---LMKLRDFQQ-AGHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLKA 77 (269)
T ss_pred EEEeeCCCCCcccHHHHHH---HHHHHHHHH-CCCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 357888898 899999554 345666666 49988766542 111 222212222334556555 5666778888999
Q ss_pred cCCC
Q 008191 177 LHCL 180 (574)
Q Consensus 177 L~I~ 180 (574)
+|..
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 9874
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0032 Score=67.43 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=43.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|..|.|.+||||.-..+-- ..+.+...|++++|. +-|.-.-+ ...+|.++.+ +..++..++-+.|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~--IADlHAlT------~~~dp~~lr~-~~~e~aa~~LA~G 72 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYF--LADYHALI------KCDDPARIQR-STLEIAATWLAAG 72 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEE--eechhhcc------CCCCHHHHHH-HHHHHHHHHHHhC
Confidence 36789999999999995444321 223333458987654 22322111 1245666554 4455788899999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 73 lD 74 (431)
T PRK12284 73 LD 74 (431)
T ss_pred CC
Confidence 96
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0009 Score=72.13 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=46.1
Q ss_pred CCceeeeccccccCccchH--HHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhc
Q 008191 292 HSFDIHGGGMDLVFPHHEN--EIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~--~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
...+|.+||.|+.. |.+. ++|.- .+.++. +-++.-.+ ..+|+|||||.||.|++.| +.-+|..++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r--~~~~~~--~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRR--YGGKPQ--FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHH--hCCCCe--EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 46789999999984 5543 33332 223221 21332333 2489999999999999987 34567777777776
Q ss_pred c
Q 008191 369 T 369 (574)
Q Consensus 369 ~ 369 (574)
.
T Consensus 260 ~ 260 (408)
T PRK05912 260 I 260 (408)
T ss_pred C
Confidence 4
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0004 Score=71.18 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=44.2
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-+.+. ..+.|+..|+++.+..+ |.|. .+- ...+++ -.+++..++..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~Ia-D~ha-~t~-----~~~~~~-~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFFIA-DLHA-LTV-----KQLDPE-ELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEEec-chHH-HhC-----CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 457888889999999766332 23334445998876632 2222 110 113444 455777888999999999
Q ss_pred CC
Q 008191 180 LP 181 (574)
Q Consensus 180 ~~ 181 (574)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 63
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=75.39 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=43.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|-.|.|.+||||.-+ .-.++++++ .|++|++..+ |.|. .+-. ..++ +-..++...+..++.++|
T Consensus 32 ~v~~G~~PTG~lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha-~~~~-----~~~~-~~i~~~~~~~~~~~~A~G 99 (329)
T PRK08560 32 KAYIGFEPSGKIHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHA-YLND-----KGDL-EEIRKVAEYNKKVFEALG 99 (329)
T ss_pred EEEEccCCCCcchhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchh-hcCC-----CCCH-HHHHHHHHHHHHHHHHcC
Confidence 3458888999999999543 333555554 5988765532 2221 1110 0234 344566678888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 100 ~d 101 (329)
T PRK08560 100 LD 101 (329)
T ss_pred CC
Confidence 96
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0086 Score=62.77 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=43.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+.++|--|.|.+||||.-..+-- ..+.+...|.++++. +.|.-. +.. ..+++++ +++..+...++-++|
T Consensus 5 ~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~--IADlHa--lt~----~~~~~~l-~~~~~~~~~~~lA~G 73 (332)
T PRK12556 5 IMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF--IADYHA--LNA----VHDPEQF-RSYTREVAATWLSLG 73 (332)
T ss_pred EEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE--Eechhh--ccC----CCCHHHH-HHHHHHHHHHHhhee
Confidence 56788889999999995443321 223344456555544 223222 111 1356554 466667888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 74 lDP 76 (332)
T PRK12556 74 LDP 76 (332)
T ss_pred ecc
Confidence 963
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0071 Score=63.48 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=44.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+..+|--|.|.+||||.-+++ .-.+.+...|. | ++.-.|.|- +.. ...++.++. ++..+...++-++|
T Consensus 4 ~v~sG~~PTG~~HLGn~l~~~---~~~~~lQ~~~~-~-~i~IaD~ha--~~~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 4 IILTGDRPTGKLHLGHYVGSL---KNRVALQNEHE-Q-FVLIADQQA--LTD----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEEEeeCCCCcchHHHHHHHH---HHHHHHHhCCC-E-EEEEccchh--HhC----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 566787788999999965533 23335555664 5 444456552 222 134555544 56677888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 72 ~dp 74 (333)
T PRK12282 72 IDP 74 (333)
T ss_pred cCh
Confidence 963
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0019 Score=68.79 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=49.3
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.-...||--|.| .+|||| +|.+..++.+++..|.++... ++|- ...+. .+.+.+++ .++..+..++
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGH---lv~~~~~~~lQ~~~~~~~~I~--iaD~----e~~~~-~~~~~e~i-~~~~~en~~~ 139 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGH---LIPFMFTKYLQDAFKVPLVIQ--LTDD----EKFLW-KNLSVEES-QRLARENAKD 139 (383)
T ss_pred CCCeEEEeCCCCCCccccHHH---HHHHHHHHHHHHhCCCeEEEE--ecCH----HHHhh-cCCCHHHH-HHHHHHHHHH
Confidence 44455678888998 599999 566666665555567666655 3332 22222 24565554 5677778888
Q ss_pred HHhcCCCC
Q 008191 174 MVDLHCLP 181 (574)
Q Consensus 174 l~~L~I~~ 181 (574)
+.++|+.+
T Consensus 140 iiA~G~dp 147 (383)
T PLN02486 140 IIACGFDV 147 (383)
T ss_pred HHHhCCCC
Confidence 99999863
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=69.66 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=51.2
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.-...+|--|.|.+|||| .++..--+.. |...|++|++..+ |.-..+- ...|.++.++ +.....+.+++
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia--D~hA~~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA--DWFALLN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc--cceeecC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 34445667888999999999 2222222333 4567999887643 2211110 1133445554 55667788889
Q ss_pred HhcCCCCC-CCcccccccHH
Q 008191 175 VDLHCLPP-SVEPRVSDHMP 193 (574)
Q Consensus 175 ~~L~I~~~-d~~~r~s~~~~ 193 (574)
.++|+.+. ..+...|++++
T Consensus 135 ~A~GlDp~k~~i~~qS~~v~ 154 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASEEIN 154 (383)
T ss_pred HHhCCCccceEEEECChhhh
Confidence 99999631 22334455444
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=66.19 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=44.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
...+|--|.|.+||||.-..+ +.|.++ .|+++++. +.|.-.-+. ...++.++ +.+..++..++-++
T Consensus 4 ~v~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~~~~--IADlHAlt~-----~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYECFFF--VADWHALTT-----HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcEEEE--eecHHHHhC-----CCCCHHHH-HHHHHHHHHHHHHc
Confidence 467888999999999966543 355553 57776433 333322211 11255544 45667789999999
Q ss_pred CCCC
Q 008191 178 HCLP 181 (574)
Q Consensus 178 ~I~~ 181 (574)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9963
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0035 Score=64.55 Aligned_cols=194 Identities=19% Similarity=0.118 Sum_probs=100.8
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcC-CeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLG-YEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G-~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
....+|-.|.|.+||||.-.++ -.+++...+ +++++. -.|+|-- -..+.++++-.+.+..+...++-+
T Consensus 6 ~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~-IaDlha~------t~~~~~~~~~l~~~~~e~~a~~LA 74 (314)
T COG0180 6 FRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFF-IADLHAI------TVRQDPTEEDLRQATREVAADYLA 74 (314)
T ss_pred ceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCceEEE-EecHHHh------hcCCCChHHHHHHHHHHHHHHHHH
Confidence 4567899999999999965543 233444445 466543 3333321 012344446677888888899999
Q ss_pred cCCCCCCC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 177 LHCLPPSV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 177 L~I~~~d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
+|+. |+. ....-.+++++.++.-.| +|....|.|... ..+|...
T Consensus 75 ~GiD-P~k~~if~QS~v~e~~eLa~~l-----------------~~~~~~gel~r~-------------~~fKdk~---- 119 (314)
T COG0180 75 VGLD-PEKSTIFLQSEVPEHAELAWLL-----------------SCVTNFGELERM-------------TQFKDKS---- 119 (314)
T ss_pred hccC-ccccEEEEccCchHHHHHHHHH-----------------HccCcHHHHHhh-------------cCcchhh----
Confidence 9996 443 111112333322222222 111222322210 0001000
Q ss_pred hcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHH--HHHHhhcc----CCCCceEEEE
Q 008191 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE--IAQSCAAC----NNSHISYWIH 329 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~--~A~~~a~~----~~~~~~~~~h 329 (574)
.+.++ ..+- |-....+-|+...|=+..++...|.|+. ||-+.. +|+-.... ...|.-+ +
T Consensus 120 ----~~~~~---~~~~-----Gl~~YPvlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~~-~- 184 (314)
T COG0180 120 ----AKKGE---SIPI-----GLLTYPVLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEAL-I- 184 (314)
T ss_pred ----hcccc---cccc-----cchhccHHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCccCCcccc-c-
Confidence 00000 0111 2222335677777766678889999987 787654 34443321 2333322 3
Q ss_pred ee--EEE-eCC-cccccccCc-eeehhh
Q 008191 330 NG--FVT-IDS-EKMSKSLGN-FFTIRQ 352 (574)
Q Consensus 330 ~g--~v~-~~G-~KMSKS~Gn-~i~~~d 352 (574)
+. ++. ++| +|||||.+| +|.+.|
T Consensus 185 ~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 185 SKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCCcccCCCCCCcccccCCCCeeeccC
Confidence 45 554 677 899999999 776544
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=72.56 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154 (574)
Q Consensus 94 ~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~ 154 (574)
.++.+++++=|-|| |.+|+||+.+.--.|+..=|.|++|++|.|..|+-.-|-+|-..|.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdK 103 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADK 103 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHH
Confidence 34678899999998 99999999999999999999999999999999999988777665543
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=69.40 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=33.9
Q ss_pred ceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeeh
Q 008191 294 FDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTI 350 (574)
Q Consensus 294 ~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~ 350 (574)
.|+++||.|+.+-|..-.- ....++.+ ..+-+|+=.|+ .+|.|||||.||.++.
T Consensus 181 ~dlq~GG~DQ~~ni~~grd-l~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRD-LIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred cchhcCChHHHHHHHHHHH-HHHHhCCC--CeEEEEeccccCCCCCcccccCCCceEc
Confidence 4699999998876643211 12223342 23446655554 5899999999995543
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00039 Score=71.68 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCC--CCceEEEEeeEEE-eCCc-ccccccCc-eeehhhh
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN--SHISYWIHNGFVT-IDSE-KMSKSLGN-FFTIRQV 353 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~--~~~~~~~h~g~v~-~~G~-KMSKS~Gn-~i~~~d~ 353 (574)
++...+-...++.++|.|+. +|.+.-.-.....+.+ .+..+-+++-++. ++|. |||||.+| .|++.|-
T Consensus 141 QaaD~~~l~~~~~~~G~DQ~-~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 141 QAADILLLKADLVPGGIDQR-GHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp HHHHHHHTTHSEEEEEGGGH-HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccceeeeccccccccchHH-HHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 33344434567999999986 3433222222222222 1122335556665 4888 99999999 8887664
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.019 Score=60.39 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|--|.|.+||||.-..+. -+.++++ +++|.++.. |.-..+- ..++++ ...+...+..++-++|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~Ia--D~ha~t~------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCIA--DLHALTV------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEEe--cHHHHhC------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 3567788889999999665442 2333433 377776653 2221111 124443 4466677888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 70 lD 71 (333)
T PRK00927 70 ID 71 (333)
T ss_pred cC
Confidence 96
|
|
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.069 Score=56.90 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
..++|--|.|.+||||.-..+ .-+..++ .|+++++. +.|.-.-+ ...+++++. ++..++..++-++|
T Consensus 48 ~v~sGiqPSG~lHLGnylGai--~~~v~lQ--~~~~~~~~--IADlHAlt------~~~~~~~lr-~~~~~~~a~~lA~G 114 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI--KNWVALQ--ETYDTFFC--VVDLHAIT------LPHDPRELG-KATRSTAAIYLACG 114 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH--HHHHHHh--ccCCEEEE--EecHHHhh------CCCCHHHHH-HHHHHHHHHHHHcC
Confidence 466788899999999954443 2233333 38887533 33332222 123555554 55567888999999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 115 lDP 117 (389)
T PLN02886 115 IDP 117 (389)
T ss_pred cCc
Confidence 963
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0047 Score=65.93 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=27.8
Q ss_pred eEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 98 GMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 98 ~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
....||--|.| .+||||+-+ .-.+++++ ..|++|.++.|
T Consensus 31 ~~vy~G~dPTg~~lHlGh~v~---l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVGFDPTAPSLHLGHLVP---LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEe
Confidence 35678888998 899999543 34455444 57999987753
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0047 Score=67.09 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
+|-|+|.+||||+-.+-+-==++++ +-| |.|+..-| ..|+.=.++|...+.++..-||-. |
T Consensus 254 PPEPNG~LHIGHaKAInvNFgyAk~--~~G--~cyLRfDD--------------TNPEkEee~yf~sI~e~V~WLG~~-P 314 (764)
T KOG1148|consen 254 PPEPNGILHIGHAKAINVNFGYAKA--HGG--VCYLRFDD--------------TNPEKEEEEYFESIKEMVAWLGFE-P 314 (764)
T ss_pred CCCCCceeeecchhheeechhhhhh--hCC--eEEEecCC--------------CCcchhhHHHHHHHHHHHHHhCCC-c
Confidence 6889999999998754321112222 122 44444432 345555678999999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeee
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRV 211 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~ 211 (574)
...+..|+|-+++-++-.+|+.+|.||.-
T Consensus 315 ~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 315 YKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred eeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 77888899999999999999999999964
|
|
| >smart00836 DALR_1 DALR anticodon binding domain | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.009 Score=53.02 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--h----hhhhHHHHHHHHHHHHHHHhhhc
Q 008191 415 IPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK--K----QAMRLESLAALEKTIRNVLTVLG 488 (574)
Q Consensus 415 ~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~--~----~~~~~~~l~~~~~~l~~~l~iLG 488 (574)
.+..++..+..+.+.+..++ .+.+++.++.++.++...+|+|++..+.. . ...|+.++..+..++..++++||
T Consensus 37 ~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 37 EELALLRLLARFPEVLEAAA-ETLEPHRLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567778888888888888 88999999999999999999999876621 1 24688899999999999999999
Q ss_pred ccc
Q 008191 489 LMS 491 (574)
Q Consensus 489 i~p 491 (574)
|.|
T Consensus 116 i~~ 118 (122)
T smart00836 116 ISA 118 (122)
T ss_pred CCc
Confidence 986
|
This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. |
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=66.79 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=47.5
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|--|.|.+||||. ++.=+-.+.+...|++|++.. .|.-..+ -.+.|.+...+.. +...+.+++.++|
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI--AD~HAlt---~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV--ADWFALM---NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE--cchhhhc---CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 46788899999999992 222111222335799987653 2322211 1223444444432 2345777899999
Q ss_pred CCCC-CCcccccccHH
Q 008191 179 CLPP-SVEPRVSDHMP 193 (574)
Q Consensus 179 I~~~-d~~~r~s~~~~ 193 (574)
+.+. ..+.+.|+++.
T Consensus 105 lDpeK~~~~~qSd~i~ 120 (682)
T PTZ00348 105 MDMDKVLFLWSSEEIT 120 (682)
T ss_pred CCccceEEEECcHhhh
Confidence 9632 22444555443
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.13 Score=55.48 Aligned_cols=49 Identities=33% Similarity=0.390 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHh----hhh--c-HHHHHHHHHH-hHhCCcEEEeCCCCeEEEECCchh
Q 008191 516 VLQRIEDRTVAR----KNK--E-YEKSDAIRKD-LAAVGIALMDSPVGTTWRPALPLA 565 (574)
Q Consensus 516 i~~Li~~R~~AR----~~K--d-f~~AD~IRd~-L~~~GI~leDt~~Gt~W~~~~~~~ 565 (574)
++.|++.|...| +.+ + .++||.|||. |.++|+.|+|.+ |++|.+..-.+
T Consensus 470 v~~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~~e 526 (586)
T KOG2007|consen 470 VQSLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVDRE 526 (586)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhhhH
Confidence 456666555444 333 2 5899999987 999999999999 88887764444
|
|
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.47 Score=44.13 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=58.2
Q ss_pred HHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHH
Q 008191 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQIL 203 (574)
Q Consensus 124 l~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~ 203 (574)
|+|+||+.||++.|.. +.-|++|+.-|.++|.-. ++ +=...+.+. ++|+ ...+.+..++.+++.+++.++-
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIl--lT-RDr~L~~r~--k~g~--~~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRIL--LT-RDRELYKRA--KLGI--KAILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEE--Ee-ccHHHHHHh--hccC--ceEEEeCCCHHHHHHHHHHHhc
Confidence 7999999999999988 555678888888766321 00 001122332 5676 3567777788899999988886
Q ss_pred HCCceeeecCceeecCCCCCCccc
Q 008191 204 DNGFAYRVDGDVYFSVDKFPEYGQ 227 (574)
Q Consensus 204 ~kG~aY~~~~~v~f~~~~~~~yg~ 227 (574)
.++. ....-+.|+.|+.
T Consensus 89 l~~~-------~~~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPR-------LFPEFSRCPECNG 105 (165)
T ss_pred cchh-------cccccccCcccCC
Confidence 5541 2222456787764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 574 | ||||
| 1li5_A | 461 | Crystal Structure Of Cysteinyl-Trna Synthetase Leng | 1e-111 | ||
| 3tqo_A | 462 | Structure Of The Cysteinyl-Trna Synthetase (Cyss) F | 1e-108 | ||
| 3sp1_A | 501 | Crystal Structure Of Cysteinyl-Trna Synthetase (Cys | 1e-58 | ||
| 3c8z_A | 414 | The 1.6 A Crystal Structure Of Mshc: The Rate Limit | 2e-57 |
| >pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461 | Back alignment and structure |
|
| >pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462 | Back alignment and structure |
|
| >pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501 | Back alignment and structure |
|
| >pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 748 bits (1934), Expect = 0.0
Identities = 213/485 (43%), Positives = 285/485 (58%), Gaps = 28/485 (5%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++NT++R++E KP G+VGMYVCG+T YDL HIGH R +V FDV+ RYLR LGY++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +++ R E H+D L+ L P +EPR + H+ I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I++ Q++ G AY D GDV F V P YG LS + L+ +AG RV V K+NP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + +++YW+H+G V +D EKMSKSLGNFFT+R V++ Y +R FL+ HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y L +K ++ F F+ +M
Sbjct: 302 LNYSEENLKQARAALERLYTALRGTDKTVAPAGG---------------EAFEARFIEAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D + +N L + A+ +R + VLGL+
Sbjct: 347 DDDFNTPEAYSVLFDMAREVNRLKAEDM--------AAANAMASHLRKLSAVLGLLEQEP 398
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
L + + D ++ I+ R ARK K++ +DA R L +GI L D P
Sbjct: 399 EAFL----QSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ 454
Query: 555 GTTWR 559
GTTWR
Sbjct: 455 GTTWR 459
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 745 bits (1927), Expect = 0.0
Identities = 195/485 (40%), Positives = 285/485 (58%), Gaps = 30/485 (6%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+ ++N++++++E+ KP GKV +YVCG+T YD HIGH R ++ FD++ RYLR GYEV
Sbjct: 5 VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEV 64
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+VRN TD+DDKII RA E E P +L+ R+ + H+D L L P EPR + ++P I
Sbjct: 65 TFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEI 124
Query: 196 IDMITQILDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I +I ++LDN +AY +GDV+F V +F +YG+LS R L++ +AG RV V K++P DF
Sbjct: 125 IKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDF 184
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK AK GEP W+SPWG GRPGWHIECSAMS++ LG FDIHGGG+DL FPHHENEIAQ
Sbjct: 185 VLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQ 244
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + W+H G + I+ EKMSKSLGN +IR+ ++ LR FL+ HYR+P
Sbjct: 245 SEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNP 304
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++YS LE+ + Y L +P + + + F +M
Sbjct: 305 LSYSKENLENGRLALERFYLALRG----------------LPVVNHEKTSSYTDRFYEAM 348
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + A L + ++ IN + +K A L ++ + + GL+
Sbjct: 349 DDDFNTPIAFALLFEMVREINRFRDNNQIEK-------AAVLAAELKCLGNIFGLLQYSP 401
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ L + + ++ + I+ R AR K+++ +D IR L +G+A+ DS
Sbjct: 402 EQFLQG------AKKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSD 455
Query: 555 GTTWR 559
GT+WR
Sbjct: 456 GTSWR 460
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 710 bits (1835), Expect = 0.0
Identities = 141/499 (28%), Positives = 237/499 (47%), Gaps = 38/499 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT ++ + V +Y CG T Y+ +HIG+ R Y+ D+L + LR LGY+V
Sbjct: 24 LKLYNTRTKDFSELTNF--ENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKV 81
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
Y N TD+ +DK+ A E G +S + E F D L+ + P
Sbjct: 82 NYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKV 141
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLED-NRAGERVAV 244
S H+P +I+++ + + Y +G+VYF F YG+++G L D + RV V
Sbjct: 142 LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDV 201
Query: 245 DSRKKNPADFALW---KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301
D K+N DF LW K+ E W+SPWG G P WH+EC+AM+ Y + DIH GG+
Sbjct: 202 DKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGV 261
Query: 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-LYHPL 360
D + HH NEIA + N ++H F+ +D KMSKS GNF T++ + + + PL
Sbjct: 262 DHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPL 321
Query: 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTV 420
R + +HYR+ + +S+ L+++ + L ++L +D L +
Sbjct: 322 DFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGF 381
Query: 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTI 480
+ ++++ F+ +S DL+ LA L + +K+ N +
Sbjct: 382 SVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN-----LSFVSKLRLAFIFDE----- 431
Query: 481 RNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRK 540
++ L + ++ + + ++ + IE+R +A+ K ++++D IR
Sbjct: 432 -----IMSL------NLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRD 480
Query: 541 DLAAVGIALMDSPVGTTWR 559
A G L+D+ GT +
Sbjct: 481 FFAKKGFVLVDTKEGTKVK 499
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 592 bits (1528), Expect = 0.0
Identities = 133/411 (32%), Positives = 196/411 (47%), Gaps = 32/411 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L L+++ R+ V P MYVCG+TPYD +H+GHA Y+TFD+++R G+ V
Sbjct: 21 LRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTV 78
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YV+N TDVDD + RA G D +L R + F +DM L LPP +D + +
Sbjct: 79 QYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEV 138
Query: 196 IDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSGRKLEDNRAGERVAVD----SR 247
++M+ ++L +G AY V+ DVYF D ++G SG +
Sbjct: 139 VEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPG 198
Query: 248 KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 307
K + D LW++ + GEP W SP+G GRPGWH+ECSA++ +G DI GGG DL+FPH
Sbjct: 199 KSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPH 258
Query: 308 HENEIAQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVM-ELYHPLALRLF 365
HE A + + + +++H G + D KMSKS GN + Q+ + P A+RL
Sbjct: 259 HEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLG 318
Query: 366 LIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINK 425
L HYR +S L+ A+ R+ A +L +A D
Sbjct: 319 LFSGHYREDRFWSNEVLDEANARLARWRS-------ATALPEAPDATD------------ 359
Query: 426 FHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAAL 476
++DDL T LAAL + + ++ AL
Sbjct: 360 VIARVRQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVA-TTVDAL 409
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 34/249 (13%)
Query: 261 KEGEPFWE----SPWGPGRPGWHIECSAMSAAYLGHSF---------DIHGGGMDLVFPH 307
K F++ + + + + + A + D G DL+ H
Sbjct: 558 KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNH 617
Query: 308 HENEIAQSCAACNNSHISYWI-HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
I A H I NGF T++ +KMSKS GN +E +RL++
Sbjct: 618 LTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYI 677
Query: 367 I-GTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA-------LSLLDAAALKDSIPPD 418
+ + S ++ ++ ++I Y+ + + L +D L
Sbjct: 678 MSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLH-----R 732
Query: 419 TVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEK 478
+I + N ++ T + + +NDL + + L
Sbjct: 733 LNKAIKETTNAL-----EEFRTRTAVQWAFYSI--MNDLRWYLRRTEGRDDEAKRYVLRT 785
Query: 479 TIRNVLTVL 487
+ ++
Sbjct: 786 LADVWVRLM 794
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESASE 387
NGF T++ +KMSKS GN +E +RL+++ + S ++ ++ +
Sbjct: 640 VNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK 699
Query: 388 RIFYIYQTLHDCEKA-------LSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440
+I Y+ + + L +D L +I + N ++ T
Sbjct: 700 QIERFYELISQFAEYEVKGNVELKDIDRWMLH-----RLNKAIKETTNAL-----EEFRT 749
Query: 441 TVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL 487
+ + +NDL + + L + ++
Sbjct: 750 RTAVQWAFYSI--MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLM 794
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 64/458 (13%), Positives = 131/458 (28%), Gaps = 122/458 (26%)
Query: 154 ELGEDPISLSRRYCEEFHQDMV-DLHC------LPPSVEPRVSDH---MPHIIDMITQIL 203
E GE + F V + C + DH + ++
Sbjct: 10 ETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 204 DNGFAYRVDGDVYFSVDKF-PEYGQLSGR-KLEDNRAGERVAVDSRKKNPADFALWKSAK 261
+ + + F + Y L K E + + +++ L+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR----LYND-- 122
Query: 262 EGEPFWESPWGPGRPGWHIE-----CSAMSAAYLGHSFDIHG-GGMD---LVFPHHENEI 312
+ F + + R +++ A + I G G +
Sbjct: 123 -NQVF--AKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVA-------- 167
Query: 313 AQSCAA-----CNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRL--- 364
C + + I +W+ +L N + V+E+ L ++
Sbjct: 168 LDVCLSYKVQCKMDFKI-FWL--------------NLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD----AAALK-------- 412
+ + + S I + +++ R+ E L +L A A
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 413 ----------DSIPPDTVTSINKFHND--------------FLASMSDDL---------- 438
D + T T I+ H+ +L DL
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 439 HTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALE-KTIRNVLTVLGLM--STGYS 495
+++ ++ D L T ++ H K + SL LE R + L + S
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRT-VARKNKEY 532
+LL L + ++D V+ ++ + V ++ KE
Sbjct: 389 TILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKES 424
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 79/493 (16%), Positives = 150/493 (30%), Gaps = 143/493 (29%)
Query: 37 NNRRVF-----RCFST------LNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTMSRK 85
+ ++F C S L ID ++D S++ +L +++ +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAEL 234
Query: 86 RELVKPKVEGKVGMYVCGVTPY-----DLSHIGHARVYVTFDVLYRYL---RHLGYEVCY 137
R L+K K PY L ++ +A+ + F++ + L R
Sbjct: 235 RRLLKSK-------------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF------- 274
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL--HCLPPSVEPRVSDHMPHI 195
+ TD L ++L+ + +D LP V P
Sbjct: 275 -KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRR 329
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLE--DNRAG-ERVAV---DSRKK 249
+ +I + + +G A D + + DK + S LE + R +R++V +
Sbjct: 330 LSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--H 386
Query: 250 NPADF--ALWKSAKEGEPFWESPWGPGRPGWHI--ECSAMSAA---YLGHSFDIHGGGMD 302
P +W + + + + S + I ++
Sbjct: 387 IPTILLSLIWFDVIKSDVM------------VVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 303 LVFP------HHENEIAQ---SCAACNN------------SHISYWIHNGFVTID-SEKM 340
L H + + ++ SHI + H I+ E+M
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--H--LKNIEHPERM 490
Query: 341 SKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCE 400
+ F ++ L R FL I + +A I TL +
Sbjct: 491 T-----LFR-----MVF--LDFR-FL-----EQKIRHD----STAWNASGSILNTLQQLK 528
Query: 401 KALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDL----HTTVVLAALSDPLKTIND 456
+ D V +I DFL + ++L +T ++ AL + I +
Sbjct: 529 FYKPYI---CDNDPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 457 LLHTRKGKKQAMR 469
H KQ R
Sbjct: 582 EAH-----KQVQR 589
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 9/144 (6%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGH + DV+ RY R G V + T D K+ A + P +
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERVFAL---TGTDEHGQKVAEAAKQKQVSPYDFTTAVA 81
Query: 168 EEFHQDMVDLHCLPPS-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSV--DKFPE 224
EF + + + H + ++ T++ G Y + ++S+ + F
Sbjct: 82 GEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLT 141
Query: 225 YGQLSGRKLEDNRAGERVAVDSRK 248
++ +D +
Sbjct: 142 PQNITDGVDKDGNPCKVSLESGHV 165
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G+ T++ +KMSK+LGN +V++ Y +R FL+
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
H+GHA + D + RY R Y+V ++ T D KI +A ELG P L R
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDVFFL---TGTDEHGLKIQKKAEELGISPKELVDRNA 77
Query: 168 EEF 170
E F
Sbjct: 78 ERF 80
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV ++ DD I+ +A +LG P +
Sbjct: 34 HLGHMLEHIQADVWVRYQRMRGHEVNFICA----DDAHGTPIMLKAQQLGITPEQMIGEM 89
Query: 167 CEEFHQDMVDLH 178
+E D +
Sbjct: 90 SQEHQTDFAGFN 101
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G+VT++ KMSKS G F + + +LR +
Sbjct: 336 HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYT 373
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGHA + D + R+ R G +V ++ T D K++ A + G P L+ R
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDVYFL---TGTDEHGIKMLQSARKEGITPRDLADRNT 97
Query: 168 EEF 170
F
Sbjct: 98 SAF 100
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
GF+ EKMSKS+GN +++E Y LR FL+
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 111 HIGH-ARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD----KIIARANELGEDPISLSRR 165
H GH A Y+ D+ RYLR G +V ++ D I RA + G P +
Sbjct: 18 HAGHLAGAYLPADIFVRYLRLKGEDVVFICG----TDEHGTPISFRALKEGRSPREIVDE 73
Query: 166 YCEEFHQDMVDLH 178
+ E+
Sbjct: 74 FHEQIKITFQRAK 86
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
N ++T++ +K S S + + ++++ LR +L
Sbjct: 335 NEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLT 372
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGHA Y+ D + R+ R GY+V Y+ T D K+ A + G L+RR
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDVRYL---TGTDVHGQKMAETAAKEGIPAAELARRNS 84
Query: 168 EEFHQ 172
+ F +
Sbjct: 85 DVFQR 89
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G++ EKMSKS+GN +++ + +R FL+
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
H+GHA V D L R+ R GY ++ T D + + A GEDP + R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFL---TGTDEHGETVYRAAQAAGEDPKAFVDRVS 75
Query: 168 EEF 170
F
Sbjct: 76 GRF 78
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 7e-04
Identities = 44/320 (13%), Positives = 94/320 (29%), Gaps = 32/320 (10%)
Query: 86 RELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
++++ + E + + G+TP H+G+ R T ++ LR GYEV ++ + D D
Sbjct: 10 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 69
Query: 146 ------DKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI 199
+ + PIS H+ + E ++
Sbjct: 70 RFRKVPRNVPQEWKDYLGMPISEVPDPWGC-HESYAEHFMRKFEEEVEKLGIEVDLLYA- 127
Query: 200 TQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVA--------------VD 245
+++ G ++ + +K + ++ + E +
Sbjct: 128 SELYKRG---EYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 184
Query: 246 SRKKNPADFALWKSAKEGEPFWESPWGP-GRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
+ + + EG W + W ++ + D G D +
Sbjct: 185 EIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH---FGVDFEPAGKDHL 241
Query: 305 FPHHENEIAQS-CAACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLA 361
+ + + FV I + KMS S GN + + E+ P
Sbjct: 242 VAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGL 301
Query: 362 LRLFLIGTHYRSPINYSVVQ 381
+R I +
Sbjct: 302 VRFIYARHRPNKEIKIDLGL 321
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 90 KPKVEGKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+ K YV + PY DL H+GH + Y DVL R+ R GYEV
Sbjct: 32 RGK------QYVLVMFPYPSGDL-HMGHLKNYTMGDVLARFRRMQGYEV 73
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 328 IHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
I +G + +D + KMSKS GN ++ + ALR ++ + +
Sbjct: 579 ICHGLI-LDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 631
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 100.0 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.97 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.97 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.97 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.93 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.92 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.75 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.7 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.65 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.65 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 99.61 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 99.35 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 99.2 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 98.52 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 98.43 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 98.05 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 98.01 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 97.97 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 97.85 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 97.84 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 97.83 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 97.7 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 97.69 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 97.58 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 97.54 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 97.45 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 97.38 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 97.37 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 97.37 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 97.26 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.25 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 97.17 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 97.16 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 97.16 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 97.06 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 97.04 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 96.88 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 96.78 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 96.65 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 96.37 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 95.6 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 95.57 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 95.41 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 95.39 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 87.92 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 85.25 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 84.72 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 83.9 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 82.3 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 80.66 |
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-117 Score=953.81 Aligned_cols=458 Identities=42% Similarity=0.804 Sum_probs=359.9
Q ss_pred cceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH
Q 008191 74 TQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN 153 (574)
Q Consensus 74 ~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~ 153 (574)
+.|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|++|+++||||++||+|.|++|+||+|+||+.+|+
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~ 82 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG 82 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCcc
Q 008191 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRK 232 (574)
Q Consensus 154 ~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~~ 232 (574)
++|++|++++++|+++|.++|++|||.+++.+||+|+|++.|+++|++|+++|+||+. +|+||||+++++.||+|++++
T Consensus 83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~ 162 (462)
T 3tqo_A 83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRH 162 (462)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 799999999999999999999
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
++++..|++++.+.+|+||.||+|||.+++|+|+|++|||.||||||||||+|+.++||.++|||+||.||+||||+|++
T Consensus 163 ~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHhenei 242 (462)
T 3tqo_A 163 LDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEI 242 (462)
T ss_dssp CC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHH
T ss_pred hHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Q 008191 313 AQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYI 392 (574)
Q Consensus 313 A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l 392 (574)
||++|+++++|++||+|+|+|+++|+|||||+||+|+|+|++++|++|++|||++++||+++++||++.+.++.+.+.+|
T Consensus 243 aqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl 322 (462)
T 3tqo_A 243 AQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERF 322 (462)
T ss_dssp HHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Q 008191 393 YQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLES 472 (574)
Q Consensus 393 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~ 472 (574)
++++.++... . . ..+..+.+.|.+||+||||||.|++.|+++++.+|++++... ...
T Consensus 323 ~~~~~~~~~~----------~---~---~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~-------~~~ 379 (462)
T 3tqo_A 323 YLALRGLPVV----------N---H---EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ-------IEK 379 (462)
T ss_dssp HHHHTTCCC----------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-------HHH
T ss_pred HHHHHHhhhc----------c---c---hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-------HHH
Confidence 9887543110 0 0 113456789999999999999999999999999999875432 122
Q ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeC
Q 008191 473 LAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDS 552 (574)
Q Consensus 473 l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt 552 (574)
+..+...+..++.+|||.....+...+. . ...+.+++|+.||++|++||++|||++||+|||+|.++||.|+||
T Consensus 380 ~~~~~~~~~~~~~vlg~~~~~~~~~~~~---~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~ 453 (462)
T 3tqo_A 380 AAVLAAELKCLGNIFGLLQYSPEQFLQG---A---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDS 453 (462)
T ss_dssp HHHHHHHHHHHHGGGTCSCSCHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhhc---c---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEc
Confidence 3445677888899999986544332110 0 012345789999999999999999999999999999999999999
Q ss_pred CCCeEEEE
Q 008191 553 PVGTTWRP 560 (574)
Q Consensus 553 ~~Gt~W~~ 560 (574)
|+||+|++
T Consensus 454 ~~g~~w~~ 461 (462)
T 3tqo_A 454 SDGTSWRQ 461 (462)
T ss_dssp --------
T ss_pred CCCcEEEe
Confidence 99999986
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-114 Score=933.28 Aligned_cols=463 Identities=30% Similarity=0.499 Sum_probs=359.8
Q ss_pred CCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc-------
Q 008191 72 ASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV------- 144 (574)
Q Consensus 72 ~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~------- 144 (574)
..+.|+|||||||+||+|+|.+ +|+||+|||||||.+||||+|++|++|+++||||++||+|.||+|+||+
T Consensus 20 ~~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~ 97 (501)
T 3sp1_A 20 GSMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97 (501)
T ss_dssp --CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----
T ss_pred CCCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC
Confidence 3457999999999999999988 9999999999999999999999999999999999999999999999988
Q ss_pred ---cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC
Q 008191 145 ---DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK 221 (574)
Q Consensus 145 ---g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~ 221 (574)
|+||+.+|+++|++|++++++|+++|+++|++|||.+++.++++++|++.|+++|++|+++|+||+++++||||+++
T Consensus 98 DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 98 DDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 99999999999999999999999999999999999988989999999999999999999999999999999999999
Q ss_pred CCCcccccCccc-ccccCCCccccCCCccCccchhhccc--c-cCCCCccccCCcCcCCCCccchhHHHHhhhCCCceee
Q 008191 222 FPEYGQLSGRKL-EDNRAGERVAVDSRKKNPADFALWKS--A-KEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297 (574)
Q Consensus 222 ~~~yg~Ls~~~~-~~~~~g~~v~~~~~k~~~~Df~lwk~--~-~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih 297 (574)
++.||+||++++ +++..|++++++..|+||.||+|||. . ++++|+|++|||.||||||||||+|+.+|||.++|||
T Consensus 178 f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH 257 (501)
T 3sp1_A 178 FKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIH 257 (501)
T ss_dssp CTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEE
T ss_pred cCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEE
Confidence 999999999999 88989999888888999999999998 3 4688999999999999999999999999999999999
Q ss_pred eccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPIN 376 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~ 376 (574)
+||+||+||||+||+||++|+++++|++||+|+|||+++|+|||||+||+|+|+|++++ |++|++||||+++||+++++
T Consensus 258 ~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~ 337 (501)
T 3sp1_A 258 LGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK 337 (501)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEE
T ss_pred eeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASER----IFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 377 fs~~~l~~a~~~----l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
||++.+.++.+. +.+|++++.++.......... .....+ ...+..+.+.|.+||+||||||.|+++|+++++
T Consensus 338 fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~ 413 (501)
T 3sp1_A 338 FSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLKNFG---FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIK 413 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTTSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-cccchh---hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 999999999999 777777776543322110000 000111 234567788999999999999999999999999
Q ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcH
Q 008191 453 TINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEY 532 (574)
Q Consensus 453 ~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf 532 (574)
.+|. .. . .+...+..++.+|||.+.. ..++. ........+++|+.||++|++||++|||
T Consensus 414 ~~~~----~~--------~---~~~~~~~~~~~vlGl~~~~--~~~~~----~~~~~~~~~~~i~~li~~R~~ar~~kd~ 472 (501)
T 3sp1_A 414 SDNL----SF--------V---SKLRLAFIFDEIMSLNLRE--EILKN----LQNHDVVIDENMKALIEERRIAKCEKNF 472 (501)
T ss_dssp CSSS----CH--------H---HHHHHHHHHHHHHCCCHHH--HHHHH----HTTSCCCCCHHHHHHHHHHHHHHHTTCH
T ss_pred Hhcc----CH--------H---HHHHHHHHHHHHcCCCccc--chhhc----ccccchhhHHHHHHHHHHHHHHHHccCH
Confidence 8861 10 0 1125567778999997522 11110 0111234578999999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 533 EKSDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 533 ~~AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
++||+|||+|.++||.|+|+|+||+|++.
T Consensus 473 ~~aD~iRd~L~~~Gi~l~D~~~g~~w~~~ 501 (501)
T 3sp1_A 473 KRADEIRDFFAKKGFVLVDTKEGTKVKRG 501 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------
T ss_pred HHHHHHHHHHHHCCcEEEEcCCCcEEEeC
Confidence 99999999999999999999999999863
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-107 Score=883.78 Aligned_cols=458 Identities=46% Similarity=0.819 Sum_probs=354.0
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCcccc
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
|++|++++++|.++|+++|++|||.++|.++|+|+|++.|++++++|+++|++|+. +|+||||+++++.||+++++.++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999987799999999999999999999999999999 99999999999999999999988
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
++.+|++++.+.+|++|.||++||..++|+|+|++|||+|+||||+||++|+.++||.++|||++|+||+||||+||+||
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88899998888889999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQ 394 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~ 394 (574)
++|+.+.+++++|+|+|||+++|+|||||+||+|+|+|++++|++|++|||+|+++|+++++||++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99997778999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Q 008191 395 TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLA 474 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~ 474 (574)
++.++.. ...+ + .+.++.+.|.++|+||||++.|+++|+++++.+|+|++. . . ..+.
T Consensus 322 ~~~~~~~---------~~~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~----~---~~~~ 378 (461)
T 1li5_A 322 ALRGTDK---------TVAP-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D----M---AAAN 378 (461)
T ss_dssp HHTTCCT---------TSCC-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C----H---HHHH
T ss_pred HHHHhhc---------CCCH-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c----H---HHHH
Confidence 7754310 0011 1 356788899999999999999999999999999999965 2 1 2345
Q ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCC
Q 008191 475 ALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554 (574)
Q Consensus 475 ~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~ 554 (574)
.+...|..++.+|||......+..+. ... ...+..++|+.||++|++||++|||++||+|||+|.++||.|+|+|+
T Consensus 379 ~~~~~~~~~~~~lG~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~ 454 (461)
T 1li5_A 379 AMASHLRKLSAVLGLLEQEPEAFLQS--GAQ--ADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ 454 (461)
T ss_dssp HHHHHHHHHHTTTTCSCSCHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCccChhhhhhc--ccc--cccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCC
Confidence 55678888999999964332221100 000 00001146889999999999999999999999999999999999999
Q ss_pred CeEEEE
Q 008191 555 GTTWRP 560 (574)
Q Consensus 555 Gt~W~~ 560 (574)
||+|++
T Consensus 455 g~~w~~ 460 (461)
T 1li5_A 455 GTTWRR 460 (461)
T ss_dssp ------
T ss_pred CcEEEe
Confidence 999985
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-85 Score=703.02 Aligned_cols=388 Identities=34% Similarity=0.555 Sum_probs=334.5
Q ss_pred CCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH
Q 008191 71 SASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA 150 (574)
Q Consensus 71 ~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~ 150 (574)
+..++|+||||+||+|++|.| +++|+||+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~ 93 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE 93 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH
Confidence 556789999999999999999 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec----CceeecCCCCCCcc
Q 008191 151 RANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD----GDVYFSVDKFPEYG 226 (574)
Q Consensus 151 ~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~----~~v~f~~~~~~~yg 226 (574)
+|++.|++|++++++|.+.|+++|++|||.++|.++|+|+|++.++++|++|+++|++|+++ +++||+++++++||
T Consensus 94 ~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g 173 (414)
T 3c8z_A 94 RAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFG 173 (414)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhH
Confidence 99999999999999999999999999999878999999999999999999999999999998 99999999999999
Q ss_pred cccCcccccccCC--Cc-ccc-CCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 227 QLSGRKLEDNRAG--ER-VAV-DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 227 ~Ls~~~~~~~~~g--~~-v~~-~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
++++...+++..+ ++ +++ .+.|++|.||++||..++|+|.|++|||.|+||||+||++|+.++||.++|||++|+|
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D 253 (414)
T 3c8z_A 174 YESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253 (414)
T ss_dssp TTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGG
T ss_pred hhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccc
Confidence 9988766555322 11 223 3458899999999998899999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHH
Q 008191 303 LVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 303 l~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
|+||||+|++||++|+.+. +|.++|+|+|||+++|+|||||+||+|+|+|++++ ||+|++||||++++|+++++||++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~ 333 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNE 333 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHH
Confidence 9999999999999999665 88999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHT 460 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~ 460 (574)
.+.++.+.+.+|+++++++ . + + .+.++.+.|.++|+|+||+++|++.|+++++.+|+ ..
T Consensus 334 ~l~~~~~~l~~l~n~~~~~----~-----~---~-------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~--~~ 392 (414)
T 3c8z_A 334 VLDEANARLARWRSATALP----E-----A---P-------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS--YG 392 (414)
T ss_dssp HHHHHHHHHHHHHHHHTSS----C-----B---S-------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHHHHHHHhc----c-----c---h-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--cc
Confidence 9999999998888876432 0 0 0 12467788999998999999999999999999998 21
Q ss_pred hhcchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008191 461 RKGKKQAMRLESLAALEKTIRNVLTVLGLM 490 (574)
Q Consensus 461 ~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~ 490 (574)
. .. ... ...++..+..||||.
T Consensus 393 ~-~~-~~~-------~~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 393 G-HD-TES-------PRLVATTVDALLGVD 413 (414)
T ss_dssp C-SB-SSH-------HHHHHHHHHHHHCCC
T ss_pred C-CC-hhh-------HHHHHHHHHHHhCCC
Confidence 1 11 111 124566677888874
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-64 Score=553.38 Aligned_cols=400 Identities=20% Similarity=0.219 Sum_probs=302.8
Q ss_pred ceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 96 ~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+.++|+|+|+|| |++||||+|+++++|+++||+|++||+|.+++|+|+||+||+.+|+++|++|++++++|.+.|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCC--Ccccc--------cCcccccccCCCc
Q 008191 174 MVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--EYGQL--------SGRKLEDNRAGER 241 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--~yg~L--------s~~~~~~~~~g~~ 241 (574)
|++|||. +|.++|+++ |++.+++++++|+++|++|++...++||+.+.. .++.+ ++..++....+.-
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~w 162 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSY 162 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEE
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCce
Confidence 9999995 788999987 999999999999999999999999999987532 12222 1222211111100
Q ss_pred -cccCCC--------ccCccchh----------hcccccCCC-----CccccCCcCcCC---CCccc---------hhHH
Q 008191 242 -VAVDSR--------KKNPADFA----------LWKSAKEGE-----PFWESPWGPGRP---GWHIE---------CSAM 285 (574)
Q Consensus 242 -v~~~~~--------k~~~~Df~----------lwk~~~~g~-----~~w~~~WG~g~P---gWhie---------csam 285 (574)
+.++.+ +.+| ++. -|......+ |.|+++||.++| +|+++ |++|
T Consensus 163 f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 163 FFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp EECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 001100 1111 111 111111112 446889999999 79987 7777
Q ss_pred HH---hhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhH
Q 008191 286 SA---AYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLAL 362 (574)
Q Consensus 286 ~~---~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~l 362 (574)
.. +++ ++|+|++|+|++||||++|+|++++++..+ .+.|+|||||+++|+|||||+||+|+|.|++++||+|++
T Consensus 242 ~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~-~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~Dal 318 (497)
T 2csx_A 242 EDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYEL-PKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEV 318 (497)
T ss_dssp TTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHH
T ss_pred CCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCC-CcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHH
Confidence 54 455 789999999999999999999999886554 455688899999999999999999999999999999999
Q ss_pred HHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCC
Q 008191 363 RLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLH 439 (574)
Q Consensus 363 R~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n 439 (574)
|||+++ ++++++++|+++.+.++.+. ..++++.+.++...+.+..........+.+++..+.++.+.+.++| ++|+
T Consensus 319 R~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~ 397 (497)
T 2csx_A 319 RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM-EKVN 397 (497)
T ss_dssp HHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HccC
Confidence 999998 69999999999999988764 1233444444443333321111113457889999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcch-----h-hhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 440 TTVVLAALSDPLKTINDLLHTRKGKK-----Q-AMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 440 ~~~al~~l~~l~~~~N~~~~~~~~~~-----~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
++.|+++|+++++.+|+|++..+++. . +.....+..+...|+.++.+| ||+|+.++++|+.|
T Consensus 398 ~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L 466 (497)
T 2csx_A 398 FYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQML 466 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHc
Confidence 99999999999999999998876431 1 112234555667777777777 89999999999876
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-62 Score=538.68 Aligned_cols=394 Identities=20% Similarity=0.210 Sum_probs=306.9
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+|+|| |++||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|+++|+++++++++|.+.|.++|+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6899999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCC--CcccccCcccccccCCCcccc-------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--EYGQLSGRKLEDNRAGERVAV------- 244 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--~yg~Ls~~~~~~~~~g~~v~~------- 244 (574)
+|||. +|.++++++ |++.+++++++|+++|++|++++.++||+.+.. .++.+.. ..+.++|..++.
T Consensus 84 ~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~--g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 84 LLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE--GLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT--TBCTTTCSBCEEEEEEEEE
T ss_pred HhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC--CcCCCCCCeeeEEecCceE
Confidence 99995 788899987 999999999999999999999889999987632 2222210 001112322211
Q ss_pred ---C--------CCccCccchhhcccc--------cCC--C-----CccccCCcCcCC---------------------C
Q 008191 245 ---D--------SRKKNPADFALWKSA--------KEG--E-----PFWESPWGPGRP---------------------G 277 (574)
Q Consensus 245 ---~--------~~k~~~~Df~lwk~~--------~~g--~-----~~w~~~WG~g~P---------------------g 277 (574)
+ ..++++ +|..|+.. +++ + |.|+.+||.++| |
T Consensus 161 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g 239 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD 239 (500)
T ss_dssp ECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTT
T ss_pred EEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcC
Confidence 0 112223 44333221 122 1 224778999999 7
Q ss_pred CccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhc
Q 008191 278 WHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 278 Whiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
||++|+ ...++ +.|||++|+||+||||++|+|++++++..+ .+.|+|||||++ +|+|||||+||+|+|.|++++
T Consensus 240 ~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~-~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 240 YPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPM-YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred CCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCC-CcEEEECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 999886 34556 569999999999999999999999986544 556688999999 999999999999999999999
Q ss_pred cChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH-H-HHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008191 357 YHPLALRLFLIG-THYRSPINYSVVQLESASER-I-FYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 357 ~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~-l-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
||+|++|||+++ ++++++++||++.+.++.+. + ..+.+.+.++...+.+..........+.+++..++++.+.+.++
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a 394 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPL 394 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 69999999999999987753 1 12223333332222221111111112367888889999999999
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh----hhh-HHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ----AMR-LESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~----~~~-~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
| ++|+++.|+++|+++++.+|+|++..+++.. ..+ ...+..+...++.++.+| +|+|+.++++|+.|
T Consensus 395 ~-~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l 467 (500)
T 2d5b_A 395 V-RELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467 (500)
T ss_dssp H-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred H-HccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHc
Confidence 9 9999999999999999999999998764311 112 234555666777777777 89999999999886
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-62 Score=539.81 Aligned_cols=398 Identities=19% Similarity=0.172 Sum_probs=306.3
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
.+|+|+|.|| |.+||||+++++++|+++||+|++||+|.|++|+||||.||+.+|+++|++|++++++|.+.|+++|+
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC------------CCcccccCcccccccCCCc
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------------PEYGQLSGRKLEDNRAGER 241 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------------~~yg~Ls~~~~~~~~~g~~ 241 (574)
+|||. +|++.||+ +|.+.++++|.+|+++|++|++.+.||||+.|. +.||... ..+.++|..
T Consensus 90 ~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~---~~~~~sg~~ 165 (542)
T 3u1f_A 90 QMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPC---KVSLESGHV 165 (542)
T ss_dssp HHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEE---EEETTTCCB
T ss_pred HhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccc---cccCCCCCc
Confidence 99996 78898887 699999999999999999999999999999863 2333321 112334554
Q ss_pred cccCCC------------------ccCccchhhccccc--------CCCC--------ccccCCcCcCCC--------Cc
Q 008191 242 VAVDSR------------------KKNPADFALWKSAK--------EGEP--------FWESPWGPGRPG--------WH 279 (574)
Q Consensus 242 v~~~~~------------------k~~~~Df~lwk~~~--------~g~~--------~w~~~WG~g~Pg--------Wh 279 (574)
++.... +.++ ++..|+..+ .+.+ .|...||++.|+ |+
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~ 244 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWL 244 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeee
Confidence 432100 1111 221221110 1122 233459999997 65
Q ss_pred cchhHHHHh--------------------hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 280 IECSAMSAA--------------------YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 280 iecsam~~~--------------------~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
.+...+... ...+|.|+|++|+|++|||+++|+|++++.+.++ .+.++|||||+.+|+|
T Consensus 245 da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~-~~~v~~hg~l~~~G~K 323 (542)
T 3u1f_A 245 DALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPL-PKKIVAHGWWTKDRKK 323 (542)
T ss_dssp HHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCCEETTBC
T ss_pred ccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccc-cceeccccceecCCce
Confidence 443333221 1235789999999999999999999999886554 5566888999999999
Q ss_pred cccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhh----hhcC
Q 008191 340 MSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDA----AALK 412 (574)
Q Consensus 340 MSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~----~~~~ 412 (574)
||||+||+|+|.|++++||+|+|||||++ +++++|++|+++.+.+..|. ..+|+|.+.++......... ....
T Consensus 324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~ 403 (542)
T 3u1f_A 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAY 403 (542)
T ss_dssp CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCC
T ss_pred eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchh
Confidence 99999999999999999999999999998 58999999999999888764 33555555554332221111 0112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhh-hHHHHHHHHHHHHHHHhhh
Q 008191 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAM-RLESLAALEKTIRNVLTVL 487 (574)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~-~~~~l~~~~~~l~~~l~iL 487 (574)
...++++++.++++.+.+.++| ++|++++|++.|++|++.+|+|++..+++. +.. ...++..+..+|+.++.+|
T Consensus 404 ~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll 482 (542)
T 3u1f_A 404 TEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLL 482 (542)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345788999999999999999 999999999999999999999998876531 122 2334555666777777777
Q ss_pred -ccccccHHHHHHHHH
Q 008191 488 -GLMSTGYSEVLLQLR 502 (574)
Q Consensus 488 -Gi~p~~~~~i~~~l~ 502 (574)
+|+|+.++++|++|+
T Consensus 483 ~P~~P~~aeei~~~Lg 498 (542)
T 3u1f_A 483 SPILPRKSVVIFDMLG 498 (542)
T ss_dssp TTTSHHHHHHHHHHHT
T ss_pred HhHhHHHHHHHHHHCC
Confidence 999999999999874
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-61 Score=545.65 Aligned_cols=403 Identities=15% Similarity=0.142 Sum_probs=313.6
Q ss_pred eeEEEcCCCCCCcCcchhhHH-HHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARV-YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+.|.+..|+|||.+||||+++ +|.+|+++||+|++||+|.|++|+|+||++|+.+|+++|++|++++++|.+.|+++|+
T Consensus 4 ~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~ 83 (722)
T 1rqg_A 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQ 83 (722)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445555688889999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCC------------CCcc------cc-------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------------PEYG------QL------- 228 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------------~~yg------~L------- 228 (574)
+|||. +|.+.|+++ |.+.++++|++|+++|+||++.+.+|||+.|. |.|| .+
T Consensus 84 ~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~ 162 (722)
T 1rqg_A 84 RAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRP 162 (722)
T ss_dssp HHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCC
T ss_pred HhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccc
Confidence 99995 899999984 99999999999999999999999999999873 3333 22
Q ss_pred -cCccc---ccccCCCccccC----------CCccCccchh---hcccc---------cCCCCcc----ccCCcCcCC--
Q 008191 229 -SGRKL---EDNRAGERVAVD----------SRKKNPADFA---LWKSA---------KEGEPFW----ESPWGPGRP-- 276 (574)
Q Consensus 229 -s~~~~---~~~~~g~~v~~~----------~~k~~~~Df~---lwk~~---------~~g~~~w----~~~WG~g~P-- 276 (574)
++..+ .+.++|..++.. .+++...++. .|... +.|.+.| +.+||+++|
T Consensus 163 l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~ 242 (722)
T 1rqg_A 163 LTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLD 242 (722)
T ss_dssp CCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCC
T ss_pred cChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCcc
Confidence 11111 122345554321 1111111111 24332 3555666 789999999
Q ss_pred --CCc-----------cchhHHHH-------------hhhC--C--CceeeeccccccCccchHHHHHHhhcc-------
Q 008191 277 --GWH-----------IECSAMSA-------------AYLG--H--SFDIHGGGMDLVFPHHENEIAQSCAAC------- 319 (574)
Q Consensus 277 --gWh-----------iecsam~~-------------~~lG--~--~~dih~~G~Dl~fpH~~~~~A~~~a~~------- 319 (574)
||+ ++|.+++. .||+ . ..++|++|+|++|||..+|||++++++
T Consensus 243 ~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~ 322 (722)
T 1rqg_A 243 EEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEV 322 (722)
T ss_dssp CSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSC
T ss_pred ccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccccc
Confidence 565 44444332 3554 2 245999999999999999999999976
Q ss_pred --C-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHH
Q 008191 320 --N-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIY 393 (574)
Q Consensus 320 --~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~ 393 (574)
+ +.| +.|+|||||+++|+|||||+||+|+|.|++++||+|++||||++. ++++|++||++.+.+..|. ++++.
T Consensus 323 ~rg~~~P-k~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~ 401 (722)
T 1rqg_A 323 EAEWNLP-YDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLG 401 (722)
T ss_dssp CBCBCCC-SBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHH
T ss_pred ccCCCCC-CEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 2 444 677899999999999999999999999999999999999999997 9999999999999988763 33444
Q ss_pred HHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch---
Q 008191 394 QTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK--- 465 (574)
Q Consensus 394 ~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~--- 465 (574)
|+++++...+..+.... .....+.+++..++++.+.+.++| ++|+++.|++.|++|++.+|+|++..+++.
T Consensus 402 N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k 480 (722)
T 1rqg_A 402 NFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFDHKQPWKTAK 480 (722)
T ss_dssp HHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 55544444443321111 112235678889999999999999 999999999999999999999999877542
Q ss_pred -hhh-hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 466 -QAM-RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 466 -~~~-~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
... ...++..+...++.++.+| +|+|+.++++|++|+
T Consensus 481 ~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~ 520 (722)
T 1rqg_A 481 EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 520 (722)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcC
Confidence 112 2234555667778777777 899999999999885
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=528.21 Aligned_cols=395 Identities=19% Similarity=0.186 Sum_probs=300.7
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
+.+.++.|+|+|++||||+|+++++|+++||+|++||+|.+++|+|+||+||+.+|+++|++|++++++|.++|++++++
T Consensus 14 ~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 93 (524)
T 2x1l_A 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEK 93 (524)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444456777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCC--CCcccccCcc--cccc-cCCCcccc-----
Q 008191 177 LHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--PEYGQLSGRK--LEDN-RAGERVAV----- 244 (574)
Q Consensus 177 L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--~~yg~Ls~~~--~~~~-~~g~~v~~----- 244 (574)
|||. +|.+.|+++ |++.+++++++|+++|++|++++.||||+.+. ..++.+.... ..+. .+|..++.
T Consensus 94 lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~q 172 (524)
T 2x1l_A 94 LNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQT 172 (524)
T ss_dssp TTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEE
T ss_pred cCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCC
Confidence 9996 788999997 99999999999999999999999999999872 2333221000 0000 23333211
Q ss_pred -----CCC--------ccCccchh----------hcccccCCCCcc----c-cCCcCcCCC--------Ccc--------
Q 008191 245 -----DSR--------KKNPADFA----------LWKSAKEGEPFW----E-SPWGPGRPG--------WHI-------- 280 (574)
Q Consensus 245 -----~~~--------k~~~~Df~----------lwk~~~~g~~~w----~-~~WG~g~Pg--------Whi-------- 280 (574)
+.+ +.++ ++. -|- ..+...| . .+||.++|+ |+.
T Consensus 173 wF~~l~~~~~~l~~~~~~~~-~~i~p~~~~~~~~~~~--~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~ 249 (524)
T 2x1l_A 173 YFFRLSAYTDRLLALYEEHP-EFIGPDARRNEIVSFV--SGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTG 249 (524)
T ss_dssp EEECGGGSHHHHHHHHHHCG-GGEESHHHHHHHHHHH--TTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred eEeeHHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHH--HcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHH
Confidence 000 0111 111 010 0112223 2 358888873 432
Q ss_pred -----chhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhh
Q 008191 281 -----ECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 281 -----ecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~ 355 (574)
+|+.+...++ +.|+|++|+|++||||++|+|++++++..+|.++|+| |||+++|+|||||+||+|+|.|+++
T Consensus 250 ~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d~i~ 326 (524)
T 2x1l_A 250 VGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVNLVD 326 (524)
T ss_dssp TTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHHHHH
T ss_pred cCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHHHHH
Confidence 2333444444 6899999999999999999999999877777888776 9999999999999999999999999
Q ss_pred ccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHH
Q 008191 356 LYHPLALRLFLIG-THYRSPINYSVVQLESASER-----IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSIN 424 (574)
Q Consensus 356 ~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~-----l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~ 424 (574)
+||+|++|||+++ ++++++++||++.+.++.+. ++|+.+++ ...+.+.... ....+.+.+++..+.
T Consensus 327 ~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~---~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 327 TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRS---LSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999 79999999999999988764 44443332 2222221110 011223567888899
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch--------h-hhhHHHHHHHHHHHHHHHhhh-ccccccH
Q 008191 425 KFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK--------Q-AMRLESLAALEKTIRNVLTVL-GLMSTGY 494 (574)
Q Consensus 425 ~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~--------~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~ 494 (574)
++.+.+.++| ++|+++.|+++|++|++.+|+|++..+++. . .....++..+..+++.++.+| ||+|+.+
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~a 482 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPEST 482 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999 999999999999999999999998776521 1 112234555667777777777 8999999
Q ss_pred HHHHHHHH
Q 008191 495 SEVLLQLR 502 (574)
Q Consensus 495 ~~i~~~l~ 502 (574)
+++|+.|.
T Consensus 483 eei~~~L~ 490 (524)
T 2x1l_A 483 AKLLDLLG 490 (524)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998863
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-60 Score=522.50 Aligned_cols=410 Identities=20% Similarity=0.199 Sum_probs=301.3
Q ss_pred cccccCCCCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHH
Q 008191 87 ELVKPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR 164 (574)
Q Consensus 87 ~~f~p~~~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~ 164 (574)
.++.|.+-++-++|+|||+|| |++||||+|++|++|+++|++|++||+|.+++|+||||+||+.+|++.|++|+++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~ 94 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLAD 94 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHH
Confidence 455555445568999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc--c-Ccc-cccccC
Q 008191 165 RYCEEFHQDMVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL--S-GRK-LEDNRA 238 (574)
Q Consensus 165 ~~~~~f~~~l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L--s-~~~-~~~~~~ 238 (574)
+|.+.|+++|++|||. +|.+.|+++ |++.+++++++|.++|++|++++.+|||+.|...+..- . +.+ ..+..+
T Consensus 95 ~~~~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~ 173 (536)
T 4dlp_A 95 RNTSAFRRMAEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQ 173 (536)
T ss_dssp HHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTT
T ss_pred HHHHHHHHHHHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCC
Confidence 9999999999999997 678888885 99999999999999999999999999999875433221 0 000 001123
Q ss_pred CCccccC----------CC--------ccCccchh----------hcccccCCCCcc-----ccCCcCcCCC--------
Q 008191 239 GERVAVD----------SR--------KKNPADFA----------LWKSAKEGEPFW-----ESPWGPGRPG-------- 277 (574)
Q Consensus 239 g~~v~~~----------~~--------k~~~~Df~----------lwk~~~~g~~~w-----~~~WG~g~Pg-------- 277 (574)
|..++.. .. +.+| +|. -|- +.+...| +..||+++|+
T Consensus 174 g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l--~~~l~D~~ISR~~~~WGipiP~~~~~v~yv 250 (536)
T 4dlp_A 174 GTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFV--KSGLKDLSISRTTFDWGIPVPGDEKHVMYV 250 (536)
T ss_dssp SSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHH--HTCCCCEECEEC--CCSCBCTTCTTSEECH
T ss_pred CCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHH--hcCCCccCCccCCCcCCeeCCCCCCCceEE
Confidence 4433211 00 1111 111 111 1122333 2469999996
Q ss_pred CccchhHHHHhh----------hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce
Q 008191 278 WHIECSAMSAAY----------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF 347 (574)
Q Consensus 278 Whiecsam~~~~----------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~ 347 (574)
|+....++.... -+++.|+|+.|+|+++||+.+|+|++.+++..+|.++++ ||||+++|+|||||+||+
T Consensus 251 Wfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~-hg~v~~~G~KMSKS~GNv 329 (536)
T 4dlp_A 251 WVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFA-HGFLFNRGEKMSKSVGNV 329 (536)
T ss_dssp HHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE-ECCEEC------------
T ss_pred eeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEe-eeeEeeCCceecccCCCC
Confidence 766555554321 123678999999999999999999999998888888855 599999999999999999
Q ss_pred eehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhH
Q 008191 348 FTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDT 419 (574)
Q Consensus 348 i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l 419 (574)
|+|.|++++||+|++|||+++ .++.++++|+++.+.+..|. ..+++|.++++...+.+.... ......+.++
T Consensus 330 i~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~l 409 (536)
T 4dlp_A 330 IDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAI 409 (536)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHH
Confidence 999999999999999999999 59999999999999887653 234555555554444332111 0112345789
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h-hhhHHHHHHHHHHHHHHHhhh-cccccc
Q 008191 420 VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q-AMRLESLAALEKTIRNVLTVL-GLMSTG 493 (574)
Q Consensus 420 ~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~ 493 (574)
+..++++.+.+.++| +++++++|+.+|++|++.+|+|++..+++. . ..+..++..+..+|+.++.+| +|+|+.
T Consensus 410 l~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~ 488 (536)
T 4dlp_A 410 LDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQS 488 (536)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999 899999999999999999999999877531 1 122345566677777778787 899999
Q ss_pred HHHHHHHHH
Q 008191 494 YSEVLLQLR 502 (574)
Q Consensus 494 ~~~i~~~l~ 502 (574)
+++++++|+
T Consensus 489 aeei~~~L~ 497 (536)
T 4dlp_A 489 AEKLLDILA 497 (536)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHcC
Confidence 999998863
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-60 Score=525.89 Aligned_cols=413 Identities=19% Similarity=0.184 Sum_probs=315.0
Q ss_pred ccccccCCC-CceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHH
Q 008191 86 RELVKPKVE-GKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISL 162 (574)
Q Consensus 86 ~~~f~p~~~-~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~ 162 (574)
-.+|.|..+ +.-++|+|+|+|| |++||||+|++|++|+++|++|++||+|.+++|+||||+||+.+|++.|++|+++
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~ 93 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDF 93 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHH
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHH
Confidence 456766554 3568999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc--c-C-----cc
Q 008191 163 SRRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL--S-G-----RK 232 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L--s-~-----~~ 232 (574)
+++|.+.|+++|++|||. +|.|.|++ +|.+.+++++++|.++|++|++++.+|||+.|...+..- . + ..
T Consensus 94 ~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~ 172 (564)
T 3kfl_A 94 TTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKP 172 (564)
T ss_dssp HHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCE
Confidence 999999999999999997 78888888 599999999999999999999999999999875332210 0 0 00
Q ss_pred cc-cccCCCcccc----------CCC--------ccCccchhhcccc--------cCCC----Ccc----ccCCcCcCCC
Q 008191 233 LE-DNRAGERVAV----------DSR--------KKNPADFALWKSA--------KEGE----PFW----ESPWGPGRPG 277 (574)
Q Consensus 233 ~~-~~~~g~~v~~----------~~~--------k~~~~Df~lwk~~--------~~g~----~~w----~~~WG~g~Pg 277 (574)
.. ...+|..++. +.+ +.++ +|...... +.|. +++ +..||+++|+
T Consensus 173 c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~ 251 (564)
T 3kfl_A 173 CKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG 251 (564)
T ss_dssp EEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT
T ss_pred eccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC
Confidence 00 0013444321 110 1111 22111000 1122 344 4679999997
Q ss_pred --------CccchhHHHHh--h-------------h----CCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEe
Q 008191 278 --------WHIECSAMSAA--Y-------------L----GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHN 330 (574)
Q Consensus 278 --------Whiecsam~~~--~-------------l----G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~ 330 (574)
|+.....++.. | + .++.|+|++|+|+++||..+|+|++++++..+|.++. .|
T Consensus 252 ~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~-~h 330 (564)
T 3kfl_A 252 DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLV-SH 330 (564)
T ss_dssp EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEE-EE
T ss_pred CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEE-Ec
Confidence 77666554321 2 1 2356899999999999999999999999888888774 56
Q ss_pred eEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhh
Q 008191 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLD 407 (574)
Q Consensus 331 g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~ 407 (574)
|||+.+|+|||||+||+|+|.|++++||+|++||||++ .++.++++|+++.+.+..|. ..+++|+++++...+....
T Consensus 331 g~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~ 410 (564)
T 3kfl_A 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVN 410 (564)
T ss_dssp CCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT
T ss_pred ccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 69999999999999987663 4466666666554443111
Q ss_pred hh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhh-HHHHHHHHH
Q 008191 408 AA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMR-LESLAALEK 478 (574)
Q Consensus 408 ~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~-~~~l~~~~~ 478 (574)
.. ......+.+++..++++.+.+.++| ++++++.|+.+|++|++.+|+|++..++|. ...+ ..++..+..
T Consensus 411 g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~ 489 (564)
T 3kfl_A 411 GMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTME 489 (564)
T ss_dssp SBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHH
Confidence 10 0112335788999999999999999 899999999999999999999999877531 1222 334556666
Q ss_pred HHHHHHhhh-ccccccHHHHHHHHH
Q 008191 479 TIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 479 ~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.++.++.+| +|+|+.+++++++|+
T Consensus 490 ~l~~l~~lL~P~~P~~ae~i~~~Lg 514 (564)
T 3kfl_A 490 GLRICTMFLQPVMPQKAKEIMDALG 514 (564)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 777777777 899999999998873
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-59 Score=519.53 Aligned_cols=408 Identities=16% Similarity=0.172 Sum_probs=311.8
Q ss_pred ccCCCCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHH
Q 008191 90 KPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYC 167 (574)
Q Consensus 90 ~p~~~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~ 167 (574)
.|.+++++++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+||||+||+.+|++.|+++++++++|.
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 90 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMS 90 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHH
Confidence 456788999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc-----
Q 008191 168 EEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL----- 228 (574)
Q Consensus 168 ~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L----- 228 (574)
+.|+++|++|||. +|.+.+++ +|.+.+++++++|.++|++|++++.+|||+.+ ||.||..
T Consensus 91 ~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 91 QEHQTDFAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 9999999999996 77887777 78999999999999999999999999999875 4445421
Q ss_pred ---------cCcccc---cccCCCccccCCCcc---Cccchh---------------------hcccccCCC----Cccc
Q 008191 229 ---------SGRKLE---DNRAGERVAVDSRKK---NPADFA---------------------LWKSAKEGE----PFWE 268 (574)
Q Consensus 229 ---------s~~~~~---~~~~g~~v~~~~~k~---~~~Df~---------------------lwk~~~~g~----~~w~ 268 (574)
.+..+. +.++|..+.....+. .-.+|. .|.. .+. ++++
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--~~l~D~~IsR~ 247 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFE--SGLQQWDISRD 247 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHH--HCCCCEECEEE
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh--cCCCCCCcccc
Confidence 111111 122344432110000 000111 1111 122 2344
Q ss_pred c-CCcCcCCC--------CccchhHHHHhh--h----C--------CCce-----eeeccccccCccchHHHHHHhhccC
Q 008191 269 S-PWGPGRPG--------WHIECSAMSAAY--L----G--------HSFD-----IHGGGMDLVFPHHENEIAQSCAACN 320 (574)
Q Consensus 269 ~-~WG~g~Pg--------Whiecsam~~~~--l----G--------~~~d-----ih~~G~Dl~fpH~~~~~A~~~a~~~ 320 (574)
. .||+++|+ |+.+..++.... + | ++.| +|++|+||++||+.+|+|++++++.
T Consensus 248 ~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~ 327 (560)
T 3h99_A 248 APYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF 327 (560)
T ss_dssp SSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB
T ss_pred CCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCC
Confidence 4 58999995 766555543221 0 1 2344 9999999999999999999999988
Q ss_pred CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCC-CCCCCCHHHHHHHHHH--HHHHHHHH
Q 008191 321 NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYR-SPINYSVVQLESASER--IFYIYQTL 396 (574)
Q Consensus 321 ~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~a~~~--l~~l~~~l 396 (574)
++|.++++ ||||+++|+|||||+||+|+|.|++++||+|++||||++. +.. ++++|+++.+.+..+. ..+++|.+
T Consensus 328 ~~p~~v~~-hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~ 406 (560)
T 3h99_A 328 RKPSNLFV-HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA 406 (560)
T ss_dssp CCCSEEEE-ECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH
T ss_pred CCCcEEEE-EeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 77777755 6999999999999999999999999999999999999996 556 8999999998875542 23445555
Q ss_pred HHHHHHHhhhhhh-hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-------hhh
Q 008191 397 HDCEKALSLLDAA-ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-------QAM 468 (574)
Q Consensus 397 ~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-------~~~ 468 (574)
.++...+.+.... ......+.+++..++++.+.+.++| ++++++.|+.+|++|++.+|+|++..+++. ...
T Consensus 407 ~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~ 485 (560)
T 3h99_A 407 SRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDAD 485 (560)
T ss_dssp HTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHH
T ss_pred HHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHH
Confidence 4544444332111 1123467899999999999999999 999999999999999999999999877431 122
Q ss_pred hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 469 RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 469 ~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..++..+..+|+.++.+| +|+|+.++++|++|+
T Consensus 486 ~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~ 520 (560)
T 3h99_A 486 LQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 520 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcC
Confidence 3344556667888888888 899999999998874
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=458.84 Aligned_cols=378 Identities=16% Similarity=0.109 Sum_probs=287.0
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH---HH----------------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI---IA---------------------- 150 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI---~~---------------------- 150 (574)
+|.||+|||||||++||||+|++|++|+++|+|++.||+|.++++++|+|.++ +.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999998332 21
Q ss_pred ---------------------HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCccccccc--HHHHHHHHHHHHHCCc
Q 008191 151 ---------------------RANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH--MPHIIDMITQILDNGF 207 (574)
Q Consensus 151 ---------------------~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~--~~~i~~~i~~L~~kG~ 207 (574)
++.+.|. .+++++.+.++|+++|++|||. +|.++++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1134455 4899999999999999999997 6999999977 8899999999999999
Q ss_pred ee-----eecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccch--hhcc-------cccCCCCccccCCcC
Q 008191 208 AY-----RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF--ALWK-------SAKEGEPFWESPWGP 273 (574)
Q Consensus 208 aY-----~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk-------~~~~g~~~w~~~WG~ 273 (574)
+| +.+|.+|++++.+.....+... +....+|.... ...|+ ++|| ..+ +.|.+|||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~~l~~~-vi~ksdG~~~Y------~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~- 330 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGLEDPFF-VLLRSNGTATY------YAKDIAFQFWKMGILEGLRFR---PYENPYYP- 330 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSCSCCEE-EEECTTSCBCH------HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT-
T ss_pred cccCcccCcCCCEEEechhcCCCCCCCce-EEEecCCceEE------ecchHHHHHHHhhhhhhhhhh---hhhcCcch-
Confidence 99 7788888876654211111101 11112232211 12355 7886 322 35789997
Q ss_pred cCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEEEe--eEEEeCCcccccccCceeeh
Q 008191 274 GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWIHN--GFVTIDSEKMSKSLGNFFTI 350 (574)
Q Consensus 274 g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~h~--g~v~~~G~KMSKS~Gn~i~~ 350 (574)
+|+||++|+.|....++..++|++.+.++-|++. .+.+.+++. ++ ...|.|. |||+++|+|||||+||+|++
T Consensus 331 -r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~---~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l 405 (592)
T 1iq0_A 331 -GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV---RAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSV 405 (592)
T ss_dssp -TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---HHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBH
T ss_pred -hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---HHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCH
Confidence 8999999999965455555666665544433332 233344443 33 3456666 77999999999999999999
Q ss_pred hhhhhc-------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 008191 351 RQVMEL-------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALS 404 (574)
Q Consensus 351 ~d~l~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~ 404 (574)
+|++++ +|+|++|||+|+.+++++++||++.+.+..+. ..++++++.++...+.
T Consensus 406 ~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~ 485 (592)
T 1iq0_A 406 DEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILR 485 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999999999999988763 3367777778877776
Q ss_pred hhhhhhc-----CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhh-------hc--c---hhh
Q 008191 405 LLDAAAL-----KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR-------KG--K---KQA 467 (574)
Q Consensus 405 ~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~-------~~--~---~~~ 467 (574)
++...+. ..+.+.+++..+.++.+.+.+++ ++++++.++.+|++|++.+|+|++.+ +. + ...
T Consensus 486 k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~ 564 (592)
T 1iq0_A 486 KAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRE 564 (592)
T ss_dssp HHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHH
T ss_pred hhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHH
Confidence 6531110 11123457778889999999999 99999999999999999999999988 42 1 124
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccc
Q 008191 468 MRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 468 ~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
.|+.++.++..+|.+.|.+|||.+.
T Consensus 565 ~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 565 LRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5788889999999999999999763
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=452.63 Aligned_cols=403 Identities=19% Similarity=0.203 Sum_probs=298.4
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH----cCCChH-----------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE----LGEDPI----------- 160 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~----~g~~~~----------- 160 (574)
+..++.++|+|+|.+||||++++++.|+++||.|++||+|.+++|+|+||.+|..++++ .|+++.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 45566667888899999999999999999999999999999999999999998887763 476653
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCCCccc---cc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc-------
Q 008191 161 -SLSRRYCEEFHQDMVDLHCLPPSVEPR---VS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ------- 227 (574)
Q Consensus 161 -e~a~~~~~~f~~~l~~L~I~~~d~~~r---~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~------- 227 (574)
+++++|.+.+.++|++||+. .|+ .| |+ +|...++++|.+|+++|+||++...|+||+.|...+..
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s-~Dw-~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e 192 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGAS-ADW-SREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP 192 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCG-GGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCcc-ccC-CCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccccccc
Confidence 77999999999999999997 453 33 32 69999999999999999999999999999986321110
Q ss_pred ---------------------------------------------ccCccccc----------------ccCCCccccCC
Q 008191 228 ---------------------------------------------LSGRKLED----------------NRAGERVAVDS 246 (574)
Q Consensus 228 ---------------------------------------------Ls~~~~~~----------------~~~g~~v~~~~ 246 (574)
|.|..+.. +..|+.+....
T Consensus 193 ~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~ 272 (862)
T 1gax_A 193 TPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVT 272 (862)
T ss_dssp EEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECC
T ss_pred ccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEec
Confidence 00100000 00111100000
Q ss_pred CccCccchhhccc--------------------------------------------------------------c----
Q 008191 247 RKKNPADFALWKS--------------------------------------------------------------A---- 260 (574)
Q Consensus 247 ~k~~~~Df~lwk~--------------------------------------------------------------~---- 260 (574)
..+++.||.+++. .
T Consensus 273 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~ 352 (862)
T 1gax_A 273 PAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIE 352 (862)
T ss_dssp GGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCC
T ss_pred CCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEE
Confidence 0011111111100 0
Q ss_pred ----------------------cC-------------------CCCcc----ccCCcCcCCCCccc-hhHH---------
Q 008191 261 ----------------------KE-------------------GEPFW----ESPWGPGRPGWHIE-CSAM--------- 285 (574)
Q Consensus 261 ----------------------~~-------------------g~~~w----~~~WG~g~PgWhie-csam--------- 285 (574)
+. +...| ...||.+.|.|+++ |..+
T Consensus 353 ~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~ 432 (862)
T 1gax_A 353 YAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYL 432 (862)
T ss_dssp EEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTT
T ss_pred EEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccccc
Confidence 00 11123 35699999988753 3100
Q ss_pred -------------------------HH-----hhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 286 -------------------------SA-----AYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 286 -------------------------~~-----~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
.+ ..+| +|.|+|++|+|++|+|+.+.++++.++.++ ||
T Consensus 433 ~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pf 512 (862)
T 1gax_A 433 EDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF 512 (862)
T ss_dssp CCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSB
T ss_pred ccchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcc
Confidence 00 0122 478999999999999999999999988776 67
Q ss_pred ceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEK 401 (574)
Q Consensus 324 ~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~ 401 (574)
.++|+| |+|+ .+|+|||||+||+|+|.|++++||+|++||||++. +++++++|+++.++.+.+.+.+++|+++.+..
T Consensus 513 k~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~ 591 (862)
T 1gax_A 513 KTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591 (862)
T ss_dssp SEEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889875 8887 59999999999999999999999999999999995 99999999999999999999999998765544
Q ss_pred HHhhhhh-hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcchhhhhHHHHHHHHH
Q 008191 402 ALSLLDA-AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKKQAMRLESLAALEK 478 (574)
Q Consensus 402 ~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~~~~~~~~l~~~~~ 478 (574)
.+..... .......+++++..++++.+.+.++| ++|+++.|++.|++|+ ..+|.|++..+.+....+......+..
T Consensus 592 ~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l~~ 670 (862)
T 1gax_A 592 SREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEE 670 (862)
T ss_dssp HSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHHHH
T ss_pred cccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhccHHHHHHHHHH
Confidence 3322110 01112345788999999999999999 9999999999999999 468999987764311012334456667
Q ss_pred HHHHHHhhh-ccccccHHHHHHHHH
Q 008191 479 TIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 479 ~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|..++.+| +|+|+.++++|+.|.
T Consensus 671 ~l~~~~~lL~P~~P~~aEeiw~~L~ 695 (862)
T 1gax_A 671 VLAVLLKLLHPMMPFLTSELYQALT 695 (862)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 778888887 899999999999985
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=443.87 Aligned_cols=379 Identities=19% Similarity=0.144 Sum_probs=286.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHH-------------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK------------------------- 147 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~k------------------------- 147 (574)
.+++|.||+|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|.+
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 4578999999999999999999999999999999999999999999999998654
Q ss_pred --------------HHHHHHHc-------------------C-CChHHHHHHHHHHHHHHHHhcCCCCCCCccccccc--
Q 008191 148 --------------IIARANEL-------------------G-EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH-- 191 (574)
Q Consensus 148 --------------I~~~A~~~-------------------g-~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~-- 191 (574)
+...|++. | ..++++++.+.++|+++|++|||. +|.++++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~-~D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVK-YDLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCC-CSEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCc-cccccCcCcccc
Confidence 22223332 3 455999999999999999999997 6999999987
Q ss_pred HHHHHHHHHHHHHCCcee-----eecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccch--hhcc------
Q 008191 192 MPHIIDMITQILDNGFAY-----RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF--ALWK------ 258 (574)
Q Consensus 192 ~~~i~~~i~~L~~kG~aY-----~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk------ 258 (574)
.+.+++++++|.++|++| +.+|.+|++++.+.....+..+ +....+|.... ...|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~~-v~~ksdG~~~Y------~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPIL-VLRRSDGTATY------TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEE-EEECTTSCBCH------HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCce-EEEecCCcccc------chhhHHHHHHHhhcccc
Confidence 889999999999999999 7789999887654211111101 11112232211 13466 7786
Q ss_pred --cccCC-CCcc-ccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEEEe--e
Q 008191 259 --SAKEG-EPFW-ESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWIHN--G 331 (574)
Q Consensus 259 --~~~~g-~~~w-~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~h~--g 331 (574)
..++. ++.| .+|||+|+|| +...++..++|++.|.++-|.+ ..+.+.+++. ++ ++.|.|. |
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~---l~~~l~~lG~-~~~~~~~~h~~~g 416 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLA---IKYALQLLGF-EDAAANLYHLAYE 416 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHH---HHHHHHHTTC-HHHHHTEEEEEEC
T ss_pred cccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHH---HHHHHHHcCC-CCCCCeEEEEEee
Confidence 33322 3345 4799999998 1112334456666666543332 2344444444 34 4456666 8
Q ss_pred EEEeCCcccccccC--ceeehhhhhhc---------------------------cChhhHHHHhhccCCCCCCCCCHHHH
Q 008191 332 FVTIDSEKMSKSLG--NFFTIRQVMEL---------------------------YHPLALRLFLIGTHYRSPINYSVVQL 382 (574)
Q Consensus 332 ~v~~~G~KMSKS~G--n~i~~~d~l~~---------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l 382 (574)
||+++|+|||||+| |+|+++|++++ +|++++||++|+.+++++++||++.+
T Consensus 417 ~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~ 496 (629)
T 2zue_A 417 HVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDV 496 (629)
T ss_dssp CEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHH
T ss_pred eEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHH
Confidence 89999999999999 99999999998 99999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhhh------------c---CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 383 ESASERIF-YIYQTLHDCEKALSLLDAAA------------L---KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 383 ~~a~~~l~-~l~~~l~~~~~~l~~~~~~~------------~---~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
.+..+..+ ++.++..|+.+.+.++...+ . ..+.+.+|+..+.++++.+.+++ ++++++.++.+
T Consensus 497 ~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~y 575 (629)
T 2zue_A 497 LNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWF 575 (629)
T ss_dssp SCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 87765333 56666677766665532111 0 11223567888999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 447 LSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
|++|++.+|+||+.++.- ....|+.++.++..+|.+.|.+|||.+.
T Consensus 576 l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 576 ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999987631 1246888889999999999999999763
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=447.11 Aligned_cols=406 Identities=16% Similarity=0.168 Sum_probs=294.8
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCCh---------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDP--------------- 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~--------------- 159 (574)
+..++...|+|+|.+||||+++++++|+++||+|++||+|.+++|+|+||.+|+.+|.+. |.++
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~ 118 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA 118 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHH
Confidence 334444567777999999999999999999999999999999999999999999999985 8764
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC---------cc
Q 008191 160 -ISLSRRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE---------YG 226 (574)
Q Consensus 160 -~e~a~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~---------yg 226 (574)
++++++|.+.+++++++||+.. .+.+.+|+ +|...++++|.+|+++|++|++...|+||+.|... |.
T Consensus 119 ~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~ 198 (821)
T 1ile_A 119 CRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYK 198 (821)
T ss_dssp HHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcc
Confidence 5788899999999999999642 34455554 68899999999999999999999999999986321 11
Q ss_pred c-----------ccCc------c----------------------cc---------------------------------
Q 008191 227 Q-----------LSGR------K----------------------LE--------------------------------- 234 (574)
Q Consensus 227 ~-----------Ls~~------~----------------------~~--------------------------------- 234 (574)
. +.+. . ++
T Consensus 199 ~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (821)
T 1ile_A 199 EIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKT 278 (821)
T ss_dssp EEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEE
T ss_pred cccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEE
Confidence 0 0000 0 00
Q ss_pred -------------------------------cccCCCccccCCCccCccchhh---------------------------
Q 008191 235 -------------------------------DNRAGERVAVDSRKKNPADFAL--------------------------- 256 (574)
Q Consensus 235 -------------------------------~~~~g~~v~~~~~k~~~~Df~l--------------------------- 256 (574)
.+..|+.+......+++.||..
T Consensus 279 ~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~G~~ 358 (821)
T 1ile_A 279 FPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLY 358 (821)
T ss_dssp ECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGTTCB
T ss_pred echHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcCCCC
Confidence 0000000000000011112211
Q ss_pred -----------------------------------------------------------------ccccc--C-------
Q 008191 257 -----------------------------------------------------------------WKSAK--E------- 262 (574)
Q Consensus 257 -----------------------------------------------------------------wk~~~--~------- 262 (574)
|.... .
T Consensus 359 ~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l 438 (821)
T 1ile_A 359 FREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWL 438 (821)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHH
Confidence 10000 0
Q ss_pred -CCCcc----ccCCcCcCCCCccc---------------------------------------h----------------
Q 008191 263 -GEPFW----ESPWGPGRPGWHIE---------------------------------------C---------------- 282 (574)
Q Consensus 263 -g~~~w----~~~WG~g~PgWhie---------------------------------------c---------------- 282 (574)
+...| ...||.+.|-|+.+ |
T Consensus 439 ~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~W 518 (821)
T 1ile_A 439 KNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVW 518 (821)
T ss_dssp HTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHH
T ss_pred hCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhccccccee
Confidence 12233 34699999977531 1
Q ss_pred --hHHH-HhhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccC
Q 008191 283 --SAMS-AAYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLG 345 (574)
Q Consensus 283 --sam~-~~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~G 345 (574)
|... ...+| +|.|+|++|+||+|+|+.+..+++.++.+. ||.++|+| |||+. +|+|||||+|
T Consensus 519 fdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS~G 597 (821)
T 1ile_A 519 YDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKG 597 (821)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTT
T ss_pred cccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCccCC
Confidence 1110 01122 368999999999999999999999998765 78999886 77764 9999999999
Q ss_pred ceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH--Hhhhhh-h----hcCCCCC
Q 008191 346 NFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESA-SERIFYIYQTLHDCEKA--LSLLDA-A----ALKDSIP 416 (574)
Q Consensus 346 n~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a-~~~l~~l~~~l~~~~~~--l~~~~~-~----~~~~~~~ 416 (574)
|+|+|.|++++||+|++||||++. +++++++||++.+.++ .+.+.+|+|+++++... +..... . ......+
T Consensus 598 NvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 677 (821)
T 1ile_A 598 NVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMD 677 (821)
T ss_dssp CCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHH
T ss_pred CCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHH
Confidence 999999999999999999999997 6999999999999995 66788888888765422 111100 0 0111234
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-c
Q 008191 417 PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-G 488 (574)
Q Consensus 417 ~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-G 488 (574)
.+++..++++.+.+.++| ++|+++.|++.|++|+ ...|.|++..+. + ....+......+..+|+.++.+| +
T Consensus 678 ~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP 756 (821)
T 1ile_A 678 RWLLARMQDLIQRVTEAL-EAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAP 756 (821)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 678888999999999999 8999999999999999 678989877542 1 11123344555667778888887 8
Q ss_pred cccccHHHHHHHHHH
Q 008191 489 LMSTGYSEVLLQLRE 503 (574)
Q Consensus 489 i~p~~~~~i~~~l~~ 503 (574)
|+|+.++++|+.|..
T Consensus 757 ~~P~~aeelw~~L~~ 771 (821)
T 1ile_A 757 FTPFLAEVLWQNLVR 771 (821)
T ss_dssp TSTTHHHHHHHHHTT
T ss_pred ccchHHHHHHHhccc
Confidence 999999999999853
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=434.91 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=166.7
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+|+|+|++|+||+||||.++++++.++.+. ++++.|+|||||+++|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 478999999999999999999999987764 56688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH-HH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA-LS 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~-l~ 448 (574)
+++++++||++.+..+.+.+.+++++++++.... ..........+.+++..++++.+.+.++| ++|+++.|+.. ++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC--CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc--CcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 9999999999999999999999998876543210 00000111235678889999999999999 99999999985 47
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
++++.+|+|++..+... +......+..+|+.++.+| +|+|+.++++|+.|
T Consensus 759 ~l~~~~n~yi~~~k~~~---~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~L 809 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGRD---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809 (810)
T ss_dssp HHHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcc---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 99999999998765221 1111345666777777777 89999999999764
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=435.65 Aligned_cols=405 Identities=19% Similarity=0.202 Sum_probs=299.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCCh------------HHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDP------------ISLS 163 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~------------~e~a 163 (574)
+..+....|+|+|.+||||++++++.|+++||.|++||+|.|++|+|+||.+|+.+|++.|+++ ++++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 3445555677889999999999999999999999999999999999999999999999999876 6899
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc------
Q 008191 164 RRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ------ 227 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~------ 227 (574)
++|.+.+++++++||+.. .+.+.+|+ +|...++++|.+|+++|++|++...|+||+.|.. .|+.
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~ 208 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASI 208 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceE
Confidence 999999999999999973 23444454 6889999999999999999999999999988632 1100
Q ss_pred -----cc------------------------------------------Cc-------------------ccc----ccc
Q 008191 228 -----LS------------------------------------------GR-------------------KLE----DNR 237 (574)
Q Consensus 228 -----Ls------------------------------------------~~-------------------~~~----~~~ 237 (574)
+. +. ... .-.
T Consensus 209 ~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~ 288 (917)
T 1ffy_A 209 YVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEY 288 (917)
T ss_dssp ECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCC
T ss_pred EEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeee
Confidence 00 00 000 000
Q ss_pred CCC----------------------ccccC--------CCccCccchhhcccc---------------------------
Q 008191 238 AGE----------------------RVAVD--------SRKKNPADFALWKSA--------------------------- 260 (574)
Q Consensus 238 ~g~----------------------~v~~~--------~~k~~~~Df~lwk~~--------------------------- 260 (574)
.|. .|..+ ...+++.||..++..
T Consensus 289 ~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~ 368 (917)
T 1ffy_A 289 TGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYD 368 (917)
T ss_dssp CTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSS
T ss_pred ecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHH
Confidence 000 00000 001112233222210
Q ss_pred ---------------------------------cC-------------------------------------------CC
Q 008191 261 ---------------------------------KE-------------------------------------------GE 264 (574)
Q Consensus 261 ---------------------------------~~-------------------------------------------g~ 264 (574)
++ +.
T Consensus 369 ~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~ 448 (917)
T 1ffy_A 369 KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDR 448 (917)
T ss_dssp HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhcC
Confidence 00 00
Q ss_pred Ccc----ccCCcCcCCCCccch----------------------hH-----------------------H----------
Q 008191 265 PFW----ESPWGPGRPGWHIEC----------------------SA-----------------------M---------- 285 (574)
Q Consensus 265 ~~w----~~~WG~g~PgWhiec----------------------sa-----------------------m---------- 285 (574)
+.| ...||.+.|-|+.+- .+ +
T Consensus 449 ~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~W 528 (917)
T 1ffy_A 449 GEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVW 528 (917)
T ss_dssp CCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHH
T ss_pred ccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCee
Confidence 123 346999999876430 00 0
Q ss_pred -----H-Hhh------hCCCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehh
Q 008191 286 -----S-AAY------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIR 351 (574)
Q Consensus 286 -----~-~~~------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~ 351 (574)
+ ... +.+|.|+|++|+|++++|....++++.++.+. |+.++++| |||+. +|+|||||+||+|+|.
T Consensus 529 fdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~ 607 (917)
T 1ffy_A 529 FDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPD 607 (917)
T ss_dssp HHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHH
T ss_pred cCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChH
Confidence 0 000 12468999999999998888888888887665 67888775 99996 9999999999999999
Q ss_pred hhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhcCCCCChhHHHHHHH
Q 008191 352 QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDA------AALKDSIPPDTVTSINK 425 (574)
Q Consensus 352 d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~------~~~~~~~~~~l~~~l~~ 425 (574)
|++++||+|++|||+++++++++++|+++.++++.+.+.+|+++++.+...+..+.. .......+++++..+++
T Consensus 608 dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~ 687 (917)
T 1ffy_A 608 QVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLRE 687 (917)
T ss_dssp HHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776554433211 01122345788889999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHH
Q 008191 426 FHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSE 496 (574)
Q Consensus 426 ~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~ 496 (574)
+.+.+.++| ++|+++.|++.|++|+. ..|.|++..+.. ....+......+..++..++.+| +|+|+.+++
T Consensus 688 ~~~~v~~a~-e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEe 766 (917)
T 1ffy_A 688 FTASTINNY-ENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEE 766 (917)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999 99999999999999998 567788765531 11223334445556677777777 899999999
Q ss_pred HHHHHH
Q 008191 497 VLLQLR 502 (574)
Q Consensus 497 i~~~l~ 502 (574)
+|+.|.
T Consensus 767 iw~~l~ 772 (917)
T 1ffy_A 767 VWSHTP 772 (917)
T ss_dssp HHTTST
T ss_pred HHHHcc
Confidence 999875
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-46 Score=434.23 Aligned_cols=205 Identities=16% Similarity=0.178 Sum_probs=169.1
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+|.|+|++|+||+||||.++++++.++.+. ++++.|+|||||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 478999999999999999999999998765 55688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH-H
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL-S 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l-~ 448 (574)
+++++++|+++.+..+.+.+.+++++++++... ...........+++++..++++.+.+.++| ++|+++.|+..+ +
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~--~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY--EVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999887655321 000001112235788899999999999999 999999999865 6
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+++.+|+|++..+... +......+..+|..++.+| +|+|+.++++|+.|+
T Consensus 759 ~l~~~~n~Yi~~~k~~~---~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~ 810 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRD---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (967)
T ss_dssp HHHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcC
Confidence 99999999998765211 1233345666777777777 899999999999874
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=419.14 Aligned_cols=408 Identities=16% Similarity=0.187 Sum_probs=285.2
Q ss_pred CccccccCC-CCceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHH
Q 008191 85 KRELVKPKV-EGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPIS 161 (574)
Q Consensus 85 ~~~~f~p~~-~~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e 161 (574)
+...|++.. .++.++|+| .|+|+|.+||||+|+++++|+++||+|++||+|.+++|+|++|.+|+.+|.+.|++|++
T Consensus 40 ~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~ 119 (880)
T 4arc_A 40 EKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119 (880)
T ss_dssp HTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHH
T ss_pred hcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHH
Confidence 344565543 355667766 67888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------------C
Q 008191 162 LSRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------------E 224 (574)
Q Consensus 162 ~a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------------~ 224 (574)
+++++.+.|+++|++||+. .| .+.+++ +|.+.++++|.+|+++|++|++++.||||+.|.. .
T Consensus 120 ~~~~~i~~~~~~l~~LGis-~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~ 198 (880)
T 4arc_A 120 WTYDNIAYMKNQLKMLGFG-YDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWR 198 (880)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC----------------------
T ss_pred HHHHHHHHHHHHHHHhCCC-cCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcC
Confidence 9999999999999999997 45 233333 7999999999999999999999999999987632 2
Q ss_pred ccc-------------cc-----------------------------------------Ccc--c---------------
Q 008191 225 YGQ-------------LS-----------------------------------------GRK--L--------------- 233 (574)
Q Consensus 225 yg~-------------Ls-----------------------------------------~~~--~--------------- 233 (574)
||. ++ +.. +
T Consensus 199 ~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~ 278 (880)
T 4arc_A 199 CDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTY 278 (880)
T ss_dssp --------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCE
T ss_pred CCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeE
Confidence 221 00 000 0
Q ss_pred -----cc-----c-----------------------------------------cCCCcc--------ccCC--------
Q 008191 234 -----ED-----N-----------------------------------------RAGERV--------AVDS-------- 246 (574)
Q Consensus 234 -----~~-----~-----------------------------------------~~g~~v--------~~~~-------- 246 (574)
+. + ..|..+ ..+.
T Consensus 279 vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~ 358 (880)
T 4arc_A 279 LAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAV 358 (880)
T ss_dssp EEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEEC
T ss_pred EEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEc
Confidence 00 0 000000 0000
Q ss_pred CccCccchhhccccc------------------------CC-------------------------------------CC
Q 008191 247 RKKNPADFALWKSAK------------------------EG-------------------------------------EP 265 (574)
Q Consensus 247 ~k~~~~Df~lwk~~~------------------------~g-------------------------------------~~ 265 (574)
..+++.||..++... .| ..
T Consensus 359 Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlr 438 (880)
T 4arc_A 359 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLR 438 (880)
T ss_dssp TTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCC
T ss_pred cCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcc
Confidence 011224554432210 00 00
Q ss_pred cc----ccCCcCcCCCCccc-hh-------------------------------------------------------HH
Q 008191 266 FW----ESPWGPGRPGWHIE-CS-------------------------------------------------------AM 285 (574)
Q Consensus 266 ~w----~~~WG~g~PgWhie-cs-------------------------------------------------------am 285 (574)
.| -.-||.+.|-||++ |. ++
T Consensus 439 DW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSsw 518 (880)
T 4arc_A 439 DWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSW 518 (880)
T ss_dssp CEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGT
T ss_pred cceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcH
Confidence 12 12489999988864 31 00
Q ss_pred -HHhh---------hC-------CCceeeeccccccCccchHHHHH---Hhhc---cC-CCCceEEEEeeEEE-------
Q 008191 286 -SAAY---------LG-------HSFDIHGGGMDLVFPHHENEIAQ---SCAA---CN-NSHISYWIHNGFVT------- 334 (574)
Q Consensus 286 -~~~~---------lG-------~~~dih~~G~Dl~fpH~~~~~A~---~~a~---~~-~~~~~~~~h~g~v~------- 334 (574)
...| +. .|+|++++|+||+..|..+..-. +... .+ .|+.++ +++|||+
T Consensus 519 y~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~ 597 (880)
T 4arc_A 519 YYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYV 597 (880)
T ss_dssp HHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEE
T ss_pred HHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceecc
Confidence 0000 00 27899999999988887665422 2222 23 355555 7789996
Q ss_pred -eCCc------------------------------------ccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCC
Q 008191 335 -IDSE------------------------------------KMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPIN 376 (574)
Q Consensus 335 -~~G~------------------------------------KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~ 376 (574)
.+|+ |||||+||+|+|.|++++||+|++|||+++. +++++++
T Consensus 598 d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~ 677 (880)
T 4arc_A 598 GENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLE 677 (880)
T ss_dssp CTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEE
T ss_pred ccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcc
Confidence 2455 9999999999999999999999999999997 9999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLD-AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIN 455 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N 455 (574)
||++.++.+.+.+.++++++..+........ ........+++++..++++.+.|.++|+++|+++.|++.|++|++.+|
T Consensus 678 ~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~ 757 (880)
T 4arc_A 678 WQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLA 757 (880)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 9999999999999999998765432110000 001112335788999999999999999558999999999999999988
Q ss_pred HHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 456 DLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|... . ......+..++..++.+| +|+|+.+|++|+.|.
T Consensus 758 k~~~~-----~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg 797 (880)
T 4arc_A 758 KAPTD-----G---EQDRALMQEALLAVVRMLNPFTPHICFTLWQELK 797 (880)
T ss_dssp TSCCS-----S---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred hhhcc-----c---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcC
Confidence 75211 1 111233556677777777 899999999999874
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=421.11 Aligned_cols=271 Identities=19% Similarity=0.258 Sum_probs=224.2
Q ss_pred EEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHH---HHHHHHc--CCCh----------
Q 008191 99 MYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKI---IARANEL--GEDP---------- 159 (574)
Q Consensus 99 ~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI---~~~A~~~--g~~~---------- 159 (574)
.|+| ||||||++||||+|++|++|+++|+|+++|++|.|++++||+| +|| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 6888 9999999999999999999999999999999999999999999 999 7778777 9988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccccc-cHH-HHHHHHHHHHHCC----------------ceeeecCceeecCCC
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVEPRVSD-HMP-HIIDMITQILDNG----------------FAYRVDGDVYFSVDK 221 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~-~~~-~i~~~i~~L~~kG----------------~aY~~~~~v~f~~~~ 221 (574)
++++++|.+.|.++|+.|||. +|.+ |+|+ |++ .+++++++|+++| ++|.. + ||++..
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~-~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIE-VDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCC-CEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCC-ceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 999999999999999999995 8888 9999 998 8999999999999 55543 2 665432
Q ss_pred -CCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCC-cCcCCCCccchhHHHHhhhCCCceeeec
Q 008191 222 -FPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPW-GPGRPGWHIECSAMSAAYLGHSFDIHGG 299 (574)
Q Consensus 222 -~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~W-G~g~PgWhiecsam~~~~lG~~~dih~~ 299 (574)
|+.||++... +..+. .++.+|.+ ++|++.|+++| |.|+|+||++| +|...++|.. |+++
T Consensus 176 ~~~~~~~~~~~----------~~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~--vd~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI----------IEWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVD--FEPA 236 (523)
T ss_dssp ECTTTCCEECE----------EEECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCC--BCCE
T ss_pred cchhhCCcccc----------cccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCC--CcCC
Confidence 4566664321 11111 14457766 56889999999 99999999999 8888889865 4589
Q ss_pred cccccCcc----chHHHHHHhhccCCCCceEEEEeeEEEeC--CcccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 300 GMDLVFPH----HENEIAQSCAACNNSHISYWIHNGFVTID--SEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 300 G~Dl~fpH----~~~~~A~~~a~~~~~~~~~~~h~g~v~~~--G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
|+||++|| |.++++| .|++.++| +|+|+|||+.+ |+|||||+||+|+++++++.|+||++||||++.++++
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 8999997 56666555 68999999998 8999999999999999999999999999999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHH
Q 008191 374 PINYSVV-QLESASERIFYIYQTL 396 (574)
Q Consensus 374 ~~~fs~~-~l~~a~~~l~~l~~~l 396 (574)
+++||++ .+.++.+.+.++++.+
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8999988888777654
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-44 Score=411.79 Aligned_cols=427 Identities=19% Similarity=0.200 Sum_probs=288.0
Q ss_pred CceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++.++|++ .|+|||.+||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|.+.|++|.+++++|.+.|++
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44455555 4888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC----cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------------C-cccc------
Q 008191 173 DMVDLHCLPPSV----EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------------E-YGQL------ 228 (574)
Q Consensus 173 ~l~~L~I~~~d~----~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------------~-yg~L------ 228 (574)
+|++|||. .|+ ++...+|.+.++++|.+|+++|++|++.+.||||+.|.. . ||..
T Consensus 111 ~~~~LGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~ 189 (878)
T 2v0c_A 111 SLRLMGIL-YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL 189 (878)
T ss_dssp HHHHTTCC-CCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEE
T ss_pred HHHHhCCc-cCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEec
Confidence 99999997 442 233447999999999999999999999999999998631 2 3320
Q ss_pred -------cC---c---ccccc-------------------------cCC-------------------------------
Q 008191 229 -------SG---R---KLEDN-------------------------RAG------------------------------- 239 (574)
Q Consensus 229 -------s~---~---~~~~~-------------------------~~g------------------------------- 239 (574)
+. . .++.. ..|
T Consensus 190 ~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~ 269 (878)
T 2v0c_A 190 EQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTL 269 (878)
T ss_dssp EEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHH
T ss_pred ceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeee
Confidence 00 0 00000 000
Q ss_pred ------------------------------------------------Cc--------cccC--------CCccCccchh
Q 008191 240 ------------------------------------------------ER--------VAVD--------SRKKNPADFA 255 (574)
Q Consensus 240 ------------------------------------------------~~--------v~~~--------~~k~~~~Df~ 255 (574)
.. |..+ ...+++.||.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~ 349 (878)
T 2v0c_A 270 ELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYE 349 (878)
T ss_dssp HHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHH
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHH
Confidence 00 0000 0011223444
Q ss_pred hccccc---------CC----------------------------------------------------CCcc----ccC
Q 008191 256 LWKSAK---------EG----------------------------------------------------EPFW----ESP 270 (574)
Q Consensus 256 lwk~~~---------~g----------------------------------------------------~~~w----~~~ 270 (574)
.++... +| .-.| -.-
T Consensus 350 ~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~ 429 (878)
T 2v0c_A 350 FARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRY 429 (878)
T ss_dssp HHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCS
T ss_pred HHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccc
Confidence 332210 00 0012 235
Q ss_pred CcCcCCCCccc-hhH-----------------HH---------------------------------------------H
Q 008191 271 WGPGRPGWHIE-CSA-----------------MS---------------------------------------------A 287 (574)
Q Consensus 271 WG~g~PgWhie-csa-----------------m~---------------------------------------------~ 287 (574)
||.+.|-||.+ |.. +. .
T Consensus 430 WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~ 509 (878)
T 2v0c_A 430 WGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYL 509 (878)
T ss_dssp SSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHH
T ss_pred cCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhh
Confidence 99999988752 310 00 0
Q ss_pred hhh--------------C--CCceeeeccccccCccchHH---HHHHhhc---c-CCCCceEEEEeeEEEe---------
Q 008191 288 AYL--------------G--HSFDIHGGGMDLVFPHHENE---IAQSCAA---C-NNSHISYWIHNGFVTI--------- 335 (574)
Q Consensus 288 ~~l--------------G--~~~dih~~G~Dl~fpH~~~~---~A~~~a~---~-~~~~~~~~~h~g~v~~--------- 335 (574)
.|. . .|.|++.+|+|+..-|..+- ...+... . ..|+.++ +.||||+.
T Consensus 510 ~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~ 588 (878)
T 2v0c_A 510 RYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEV 588 (878)
T ss_dssp HTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEE
T ss_pred hccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceeccccc
Confidence 000 0 37899999999876664432 2222222 2 3467777 55799975
Q ss_pred --------------------------------------CC-------cccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 336 --------------------------------------DS-------EKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 336 --------------------------------------~G-------~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+| +|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~ 668 (878)
T 2v0c_A 589 EGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAA 668 (878)
T ss_dssp ETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHS
T ss_pred cccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccC
Confidence 89 8999999999999999999999999999999 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD---AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
+++++++||++.++.+.+.+.|+++.+......+.... ........+++++..++++.+.+.++| ++|+++.|++.
T Consensus 669 ~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~ 747 (878)
T 2v0c_A 669 PPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA 747 (878)
T ss_dssp CTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 99999999999999999999999998765433221000 011122345789999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHHHh--------hccccHHHHH
Q 008191 447 LSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLREKALK--------RADLTEDQVL 517 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~~~~~--------~~~~~~~~i~ 517 (574)
|++|++.+|+|.+... .. ..+..+|..++.+| +|+|+.++++|+.|+..... ..-+.++.++
T Consensus 748 l~~f~~~l~k~~~~~~-----~~----~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg~~sv~~~~wP~~d~~~l~~~~~~ 818 (878)
T 2v0c_A 748 LMEFLNALYEYRKDRP-----VT----PVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVE 818 (878)
T ss_dssp HHHHHHHHHHHHHHCC-----SC----HHHHHHHHHHHHHHTTTSHHHHHHHHHHHCSSCGGGSCCCCCCGGGGC-----
T ss_pred HHHHHHHHhhhcccch-----hH----HHHHHHHHHHHHHHcccchHHHHHHHHHcCCCceeecCCCCCCHHHHHHHHHH
Confidence 9999999999965421 01 23456667777777 89999999999988510000 0112345677
Q ss_pred HHHHHHHHHhhhhcHH
Q 008191 518 QRIEDRTVARKNKEYE 533 (574)
Q Consensus 518 ~Li~~R~~AR~~Kdf~ 533 (574)
..++.|...|...+..
T Consensus 819 ~~vqvngkvR~~i~v~ 834 (878)
T 2v0c_A 819 VAVQVNGAVAGTIHIP 834 (878)
T ss_dssp ----------------
T ss_pred HHHhhHHHHHHHcccC
Confidence 7888887777765544
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-45 Score=405.02 Aligned_cols=356 Identities=15% Similarity=0.124 Sum_probs=284.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc---------------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--------------------------- 145 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--------------------------- 145 (574)
.+++|.|++|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 56799999999999999999999999999999999999999999999999954
Q ss_pred ---------------------HHHHHHHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccH-
Q 008191 146 ---------------------DKIIARANE------LGED-----PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM- 192 (574)
Q Consensus 146 ---------------------~kI~~~A~~------~g~~-----~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~- 192 (574)
++|+.+|++ .|.+ ++++++.+.++|.++|++|||. +|.++++|+|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~-fD~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIK-YDVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ceeecCcchhhh
Confidence 444555665 4665 6899999999999999999997 69999999887
Q ss_pred HHHHHHHHHHHHCCceeeecCceeecCCCCCCccc-ccCcccccccCCCccccCCCccCccch--hhcccccCCCCcccc
Q 008191 193 PHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ-LSGRKLEDNRAGERVAVDSRKKNPADF--ALWKSAKEGEPFWES 269 (574)
Q Consensus 193 ~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~-Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk~~~~g~~~w~~ 269 (574)
+.|.++++.|.++|++|+.+|.+||+++.+ |+ +.++ +....+|.... .+.|+ ++||..+
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~~~d~~-v~~KsDG~~~Y------~t~Dia~~~~k~~~-------- 361 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NKKLGKA-IVQKSDGTTLY------LTRDVGAAMDRYEK-------- 361 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CTTTCEE-EEECTTSCCCH------HHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CCCCCce-eEeccCCCcCC------CCCcHHHHHHHHhh--------
Confidence 899999999999999999999999998765 43 1100 11112232211 13466 5666421
Q ss_pred CCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceee
Q 008191 270 PWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFT 349 (574)
Q Consensus 270 ~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 349 (574)
..++.-++||++|.|+.|++.. +.+.+++. ++.++|+|.+|.+++ |||||+||+|+
T Consensus 362 ------------------~~~d~~IyV~g~~q~~~f~q~~---~~~~~lG~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~ 417 (607)
T 1f7u_A 362 ------------------YHFDKMIYVIASQQDLHAAQFF---EILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKGTVVF 417 (607)
T ss_dssp ------------------HCCSEEEEECCGGGHHHHHHHH---HHHHHTTC-GGGGGEEEECCCCEE--SCCGGGTCCCB
T ss_pred ------------------cCCCcEEEEEcChHhhHHHHHH---HHHHHcCC-CcCcEEEEecccccc--cccCCCCCccc
Confidence 1234467899999998887753 44455554 567789999996665 69999999999
Q ss_pred hhhhhhccCh----------------------------hhHHHHhhccCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 008191 350 IRQVMELYHP----------------------------LALRLFLIGTHYRSPINYSVVQLESASERI-FYIYQTLHDCE 400 (574)
Q Consensus 350 ~~d~l~~~~~----------------------------d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l-~~l~~~l~~~~ 400 (574)
++|+++++.. .++||++|+.+++++++|+++.+.++.+.. -+++++..|+.
T Consensus 418 L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~ 497 (607)
T 1f7u_A 418 LDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLR 497 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998733 489999999999999999999999988755 37888888888
Q ss_pred HHHhhhhh---h--h------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----
Q 008191 401 KALSLLDA---A--A------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK----- 464 (574)
Q Consensus 401 ~~l~~~~~---~--~------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~----- 464 (574)
+++++... . . ...+.+.+|+..+.++++.+.+++ ++++++.++.+|++|++.+|+||+.++.-
T Consensus 498 SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~ 576 (607)
T 1f7u_A 498 SVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEE 576 (607)
T ss_dssp HHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHH
T ss_pred HHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 88876510 0 0 011223567788889999999999 89999999999999999999999988731
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 465 KQAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 465 ~~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
....|+.++..+..+|...|.+|||.+.
T Consensus 577 ~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 577 LATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1246889999999999999999999763
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=337.12 Aligned_cols=356 Identities=17% Similarity=0.183 Sum_probs=254.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHH-------HHHHH--cCCC-----
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKII-------ARANE--LGED----- 158 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~-------~~A~~--~g~~----- 158 (574)
.+++|.+..++|+|.|++||||+|+++++|+++|++++.||+|....+++|+|.+|- .+..+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 457899999999999999999999999999999999999999999999999998872 22122 1211
Q ss_pred -------h-------------------------HHHHHHHHHHHHHHHHhcCCCCCCCccccc-ccHHHHHHHHHHHHHC
Q 008191 159 -------P-------------------------ISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DHMPHIIDMITQILDN 205 (574)
Q Consensus 159 -------~-------------------------~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~~~~i~~~i~~L~~k 205 (574)
. +...+...+.|.+++++|||. +|.+...+ -|. .+.++++.|.++
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~-fD~~~~Ess~~~-~~~~vv~~L~~~ 185 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIK-IDSYVSERSYYD-ALNATLESLKEH 185 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCEEEGGGGST-THHHHHHHHHHT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ceeecCHHHHHH-HHHHHHHHHHHC
Confidence 0 112334456789999999997 67766664 344 889999999999
Q ss_pred CceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHH
Q 008191 206 GFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAM 285 (574)
Q Consensus 206 G~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam 285 (574)
|++|+++|.+|++.+.+ |.-... +....+|...... .|.+.-
T Consensus 186 g~~~e~dGa~~~~~~~~---g~~~~~-vl~ksDG~~~Y~t------~DiA~~---------------------------- 227 (464)
T 3fnr_A 186 KGIYEQEGKIWLASSQK---GDEKDR-VIIREDGRGTYLA------ADIVYH---------------------------- 227 (464)
T ss_dssp TCEEEETTEEEECGGGG---TCSSCE-EEECTTSCBCHHH------HHHHHH----------------------------
T ss_pred CCEEEeCCeEEEEeccc---CCCCce-EEEeCCCceehhh------HHHHHH----------------------------
Confidence 99999999999987643 321000 0001122221110 122211
Q ss_pred HHhh-hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe--CCc--ccccccCceeehhhhhhccChh
Q 008191 286 SAAY-LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI--DSE--KMSKSLGNFFTIRQVMELYHPL 360 (574)
Q Consensus 286 ~~~~-lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~--~G~--KMSKS~Gn~i~~~d~l~~~~~d 360 (574)
..++ .|....|++.|.|+. -|.....+.+.+++..++.-..+++|||++ +|+ |||||+||+|+|+|+++++|+|
T Consensus 228 ~~r~~~~~d~~Iyv~G~dq~-~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~d 306 (464)
T 3fnr_A 228 KDKMSRGYGKCINIWGADHH-GYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSD 306 (464)
T ss_dssp HHHHTSSCSEEEEEEEGGGG-GGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHH
T ss_pred HHHHHcCCCeEEEEecCcHH-HHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHH
Confidence 1111 133455888999976 243344455556655443223467899976 785 9999999999999999999999
Q ss_pred hHHHHhhccCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh---------cCCCCChhHHHHHHHHHHH
Q 008191 361 ALRLFLIGTHYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAA---------LKDSIPPDTVTSINKFHND 429 (574)
Q Consensus 361 ~lR~~ll~~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~---------~~~~~~~~l~~~l~~~~~~ 429 (574)
++|||+++.+++++++|+++.+.+..+. ..++.++..++...+.+....+ ...+.+.+++..+.++++.
T Consensus 307 alRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~ 386 (464)
T 3fnr_A 307 ALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAV 386 (464)
T ss_dssp HHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999776431 1244455666666655532110 0111156788889999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--h---hhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK--K---QAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 430 ~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~--~---~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
+.+++ ++++++.++.+|++|++.+|+|++.++.. + ...|+.++.++ +|.+.|.+|||.+.
T Consensus 387 v~~a~-~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 387 LNDAF-EARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHH-HHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 99999 99999999999999999999999988732 1 34577777777 99999999999864
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-33 Score=300.99 Aligned_cols=251 Identities=18% Similarity=0.180 Sum_probs=187.0
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
-.|+|||++||||+|++++.+.++| +|.+.++..+||.|++ +. ...|.+.|.++|+.||+.
T Consensus 101 FaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~------R~-------~~e~~~~I~edL~wLGl~- 161 (553)
T 3aii_A 101 FAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR------RV-------DPEAYDMIPADLEWLGVE- 161 (553)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------GC-------CTTHHHHHHHHHHHHTCC-
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------cc-------cHHHHHHHHHHHHHcCCC-
Confidence 3799999999999999998555554 6889999999999976 11 448899999999999997
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----CC------CcccccCc-cc---ccccCCC------c
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----FP------EYGQLSGR-KL---EDNRAGE------R 241 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----~~------~yg~Ls~~-~~---~~~~~g~------~ 241 (574)
+|..+++|+|++.+++++++|+++|+||. +||+.. .. .|..++.. .+ +++..|. +
T Consensus 162 wd~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR 236 (553)
T 3aii_A 162 WDETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVR 236 (553)
T ss_dssp CSEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEE
T ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEE
Confidence 57889999999999999999999999996 444432 11 13233321 01 1344553 2
Q ss_pred cccC--CCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc---cchHHHHHH-
Q 008191 242 VAVD--SRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP---HHENEIAQS- 315 (574)
Q Consensus 242 v~~~--~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp---H~~~~~A~~- 315 (574)
+..+ ....++.||++|+....++|.|-..|. ++|+||++|+ +|.|.+|+++++. |+.+.++|.
T Consensus 237 ~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~~nt~~Q~~ 305 (553)
T 3aii_A 237 VKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHLANREKQEY 305 (553)
T ss_dssp ECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----CHHHHHHH
T ss_pred EEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhhhCHHHHHH
Confidence 2222 223467899999987666665433332 6999999994 5678889999988 999999998
Q ss_pred -hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhhHHHHhhccCC-CCCCCC
Q 008191 316 -CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLALRLFLIGTHY-RSPINY 377 (574)
Q Consensus 316 -~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~lR~~ll~~~~-~~~~~f 377 (574)
.++.+.++++|| |+++|+++|+|||||+|| +.|+.++.+. |.|++||.|+++.++ +++.+|
T Consensus 306 l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~ 384 (553)
T 3aii_A 306 LYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTM 384 (553)
T ss_dssp HHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCC
T ss_pred HHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccc
Confidence 344455567786 999999999999999998 7889999975 999999999999888 799999
Q ss_pred CHHHHHHHHHH
Q 008191 378 SVVQLESASER 388 (574)
Q Consensus 378 s~~~l~~a~~~ 388 (574)
+++.|..+.+.
T Consensus 385 s~~~L~~~~r~ 395 (553)
T 3aii_A 385 SWKKIYGLNRS 395 (553)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999888764
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=289.91 Aligned_cols=251 Identities=19% Similarity=0.154 Sum_probs=200.8
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
.+|+|||++||||||++++.+.++| +|...|+..+||.|+. ..+..|.+.|.++|+.||+..
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999998777766 5788999999999962 135689999999999999987
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------CCCccccc---Cccc-------ccccCCC---
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------FPEYGQLS---GRKL-------EDNRAGE--- 240 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------~~~yg~Ls---~~~~-------~~~~~g~--- 240 (574)
++..+++|+|++.+.+++++|+++|+||. +||+.. ...+|..+ .+.. +++..|+
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 78889999999999999999999999996 344321 11233322 1112 2344554
Q ss_pred -----c--cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC---ccchH
Q 008191 241 -----R--VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHEN 310 (574)
Q Consensus 241 -----~--v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f---pH~~~ 310 (574)
+ +++...+.++.||++||..+++++.|..+| .++|+||++|+ +|.|.+|++|++ +|+.|
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n 236 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDN 236 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTT
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhh
Confidence 2 233445677889999998888889999999 78999998773 688999999999 99999
Q ss_pred HHHHH---hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhhHHHHhhccCC
Q 008191 311 EIAQS---CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLALRLFLIGTHY 371 (574)
Q Consensus 311 ~~A~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~lR~~ll~~~~ 371 (574)
.++|. .|++...++++| |+++|.++|+|||||+|| ++|+.++.+. |.|++||.|+++.++
T Consensus 237 ~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~ 315 (553)
T 1qtq_A 237 RRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 315 (553)
T ss_dssp HHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCC
Confidence 99998 566544356787 789999999999999997 7899999965 999999999999888
Q ss_pred CCCCC-CCHHHHHHHHH
Q 008191 372 RSPIN-YSVVQLESASE 387 (574)
Q Consensus 372 ~~~~~-fs~~~l~~a~~ 387 (574)
....+ +++..+++..+
T Consensus 316 s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 316 TKQDNTIEMASLESCIR 332 (553)
T ss_dssp CSSCCCBCHHHHHHHHH
T ss_pred CCCccccchhhHHHHHH
Confidence 76555 68887777544
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=296.46 Aligned_cols=259 Identities=17% Similarity=0.130 Sum_probs=203.0
Q ss_pred CCceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 94 EGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 94 ~~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
+++++.++| +|+|||++||||+|++++.+.++| +|.+.|+..+||.|++ + -...|.+.|.
T Consensus 61 ~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~Il 122 (851)
T 2hz7_A 61 AGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSIA 122 (851)
T ss_dssp TTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHHH
T ss_pred cCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHHH
Confidence 456666777 999999999999999998666665 5888999999999975 1 1568999999
Q ss_pred HHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------CCCcccccC-c--cc-------
Q 008191 172 QDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------FPEYGQLSG-R--KL------- 233 (574)
Q Consensus 172 ~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------~~~yg~Ls~-~--~~------- 233 (574)
++|+.||+..++..++.|+|++.+++++++|+++|+||. +||+.. +..+|..+. + ..
T Consensus 123 edL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~f 197 (851)
T 2hz7_A 123 DDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLL 197 (851)
T ss_dssp HHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHH
Confidence 999999998768889999999999999999999999996 344321 122333321 1 11
Q ss_pred ccccCCC--------c--cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccc
Q 008191 234 EDNRAGE--------R--VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDL 303 (574)
Q Consensus 234 ~~~~~g~--------~--v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl 303 (574)
+++..|+ + +++...+.++.||++|+..+.+++.|.++| .++|+||++|+ +|.|.+|++|
T Consensus 198 e~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITH 266 (851)
T 2hz7_A 198 RRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTH 266 (851)
T ss_dssp HHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSE
T ss_pred HHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcce
Confidence 3344555 2 233445667889999999888889999999 78999999996 4678888888
Q ss_pred cCc---cchHHHHHH---hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhh
Q 008191 304 VFP---HHENEIAQS---CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLA 361 (574)
Q Consensus 304 ~fp---H~~~~~A~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~ 361 (574)
++. |+.|.++|. .|++....+++| |+++|.++|.|||||+|| ++|+.++.+. |.|++
T Consensus 267 ViRG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeA 345 (851)
T 2hz7_A 267 SMCSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEA 345 (851)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHH
T ss_pred eecchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHH
Confidence 887 899999987 666443326676 789999999999999987 6789999865 99999
Q ss_pred HHHHhhccCCCCC-CCCCHHHHHHHHH
Q 008191 362 LRLFLIGTHYRSP-INYSVVQLESASE 387 (574)
Q Consensus 362 lR~~ll~~~~~~~-~~fs~~~l~~a~~ 387 (574)
||.|+++.+|... ..+++..++....
T Consensus 346 Ir~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 9999999988644 3478777775543
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=251.31 Aligned_cols=238 Identities=19% Similarity=0.197 Sum_probs=177.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++.. ||.++++.+.|+..|+|.|.. .. ...|.+.|.++|+.|||..+
T Consensus 7 APSPtG~lHiG~artal~n-----~l~Ar~~~G~filRieDtD~~---------R~----~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFN-----WLYARHRGGKFILRIEDTDRE---------RS----RPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSSS---------SC----CHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCcc---------cc----chHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999885 555556889999999999851 11 25788999999999999744
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCC-----------------CCC-CcccccCcc-cccccCCC---
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVD-----------------KFP-EYGQLSGRK-LEDNRAGE--- 240 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~-----------------~~~-~yg~Ls~~~-~~~~~~g~--- 240 (574)
...++.|++++..++++++|+++|+||. +||+. .++ .|+.++... .+.+..|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 4478999999999999999999999995 44433 122 255555421 11122333
Q ss_pred -ccccC----------------CCccCc-cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 241 -RVAVD----------------SRKKNP-ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 241 -~v~~~----------------~~k~~~-~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
++.++ ..+.++ .||++||..+ +| |.|+|+||++|+ +|.|.+|++
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIt 205 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGIT 205 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCS
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCC
Confidence 11111 123456 7999998743 46 689999999986 678889999
Q ss_pred ccCc---cchHHHHHHh---hccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC-
Q 008191 303 LVFP---HHENEIAQSC---AACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS- 373 (574)
Q Consensus 303 l~fp---H~~~~~A~~~---a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~- 373 (574)
+++. |+.|.+.|.. +++.++ + .|.|.+++ ..+|+|||||.||+ ++.++.+ .|.|++||.|++...+..
T Consensus 206 hviRG~D~~~~t~~q~~l~~alg~~~-P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~ 282 (492)
T 2cfo_A 206 DVIRGEDHIGNTPKQILLYEALGATP-P-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPP 282 (492)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHTTCCC-C-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCC
T ss_pred eEEEchhhhhCHHHHHHHHHHcCCCC-c-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 9988 9999998875 554443 3 67899995 57999999999996 8999886 599999999999864432
Q ss_pred ---CCCCCHHHHHH
Q 008191 374 ---PINYSVVQLES 384 (574)
Q Consensus 374 ---~~~fs~~~l~~ 384 (574)
.--|+.+.+.+
T Consensus 283 ~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 283 EGVGELFTLDLAAK 296 (492)
T ss_dssp TTTCSCCCHHHHHH
T ss_pred CccccccCHHHHHh
Confidence 33467666644
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=226.88 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=144.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|||++||||+|+++ .+|+.++++.+.|+..++|.|++ + -...|.+.|.++|+.|||..+
T Consensus 11 APsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~---R----------~~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP---R----------EVPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG---G----------SCTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch---h----------hHHHHHHHHHHHHHHcCCCCC
Confidence 59999999999999998 66666667889999999999976 1 115788999999999999854
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeee---------cCceeecCCCC-CCccccc---------CcccccccCCCccc
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRV---------DGDVYFSVDKF-PEYGQLS---------GRKLEDNRAGERVA 243 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~---------~~~v~f~~~~~-~~yg~Ls---------~~~~~~~~~g~~v~ 243 (574)
...++.|++.+.+++++++|+++|++|.- .+.+|+++-.. +.+|+.+ ....+++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 45789999999999999999999999974 34567665332 3455433 11123333333 22
Q ss_pred cCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHh--hccCC
Q 008191 244 VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC--AACNN 321 (574)
Q Consensus 244 ~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~--a~~~~ 321 (574)
.+ .+.++.||++||. .|+|+||++|+. .....|.+.+|| |.|+ +.|.+.|.. .+.+.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D~----l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADL----IEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGG----HHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Cccc----cccHHHHHHHHHHcCC
Confidence 11 2345679999985 479999999987 566789999999 8994 588888876 33355
Q ss_pred CCceEEEEeeEE-EeCCcccccccCceeehhhh
Q 008191 322 SHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQV 353 (574)
Q Consensus 322 ~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~ 353 (574)
++++| +|.+++ ..+|+|||||.||+ ++++.
T Consensus 211 ~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 211 KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp CCCEE-EEECBCCC--------------CCCSS
T ss_pred CCCeE-EEeeeeECCCCCcccccCCcc-ChhcC
Confidence 55667 799997 67999999999997 55443
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=179.67 Aligned_cols=231 Identities=19% Similarity=0.223 Sum_probs=152.6
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
..|.+.-++|+|+|++||||+|++++.|+++|. ..|. ++.-++|.|. ......+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~---~iLRieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGK---FILRIEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCe---EEEEEecCCc-------------cccHHHHHHHHHHHH
Confidence 356778889999999999999999999999998 5674 5556778772 122346778889999
Q ss_pred HhcCCCCCCCc---------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------CCc-ccccC
Q 008191 175 VDLHCLPPSVE---------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------PEY-GQLSG 230 (574)
Q Consensus 175 ~~L~I~~~d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~~y-g~Ls~ 230 (574)
+.||+. +|-. .+.|++.+..++++++|+++|.+|.. ||.... +.| |..+.
T Consensus 73 ~wlGl~-~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~eel~~~r~~~~~~g~~~~yd~~~s~ 146 (481)
T 2o5r_A 73 RWLGLL-WDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYV-----YAYPEEIEEMREKLLSEGKAPHYSQEMFE 146 (481)
T ss_dssp HHHTCC-CSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTTTHHHHHHHHHTTCCCCBCGGGGT
T ss_pred HHcCCC-CCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHHHHHHHHHHHhcCCCCCCCCchhh
Confidence 999996 4543 46789999999999999999999953 222210 011 00111
Q ss_pred cccc------cccCCCc-----------ccc--------CCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHH
Q 008191 231 RKLE------DNRAGER-----------VAV--------DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAM 285 (574)
Q Consensus 231 ~~~~------~~~~g~~-----------v~~--------~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam 285 (574)
+.+. .+..|.. +.. .....+..||++||. .|.|.||++|+.
T Consensus 147 r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------DG~ptY~~a~vv- 212 (481)
T 2o5r_A 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------------NGLPTYNFACVV- 212 (481)
T ss_dssp TTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------------TSCBCHHHHHHH-
T ss_pred hcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------------CCCcchhhHHHH-
Confidence 1110 0011210 000 001122346666664 388999998862
Q ss_pred HHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHH
Q 008191 286 SAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALR 363 (574)
Q Consensus 286 ~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR 363 (574)
.....|.+ .-+.|.|+. .|....+++..+++.++| . |.|..++ ..+|+||||+.|++ +++++++ .|.|++++
T Consensus 213 DD~~~git--hvirG~D~~-~~t~~q~~l~~aLG~~~p-~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~ 286 (481)
T 2o5r_A 213 DDMLMEIT--HVIRGDDHL-SNTLRQLALYEAFEKAPP-V-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALV 286 (481)
T ss_dssp HHHHTTCS--EEEEEGGGH-HHHHHHHHHHHHTTCCCC-E-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHH
T ss_pred HHHhCCCC--eEEEChhHH-HhHHHHHHHHHHcCCCCC-e-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHH
Confidence 23344543 335899965 555556666677776654 3 6888885 45899999999998 8999987 57888877
Q ss_pred HHhhcc
Q 008191 364 LFLIGT 369 (574)
Q Consensus 364 ~~ll~~ 369 (574)
.|+...
T Consensus 287 ~~l~~l 292 (481)
T 2o5r_A 287 NYLALL 292 (481)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777664
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=175.58 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=152.3
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++|..=.. |+|+|++||||+|+++..+.++|. |.-.|+.-++|.|.. .-...+.+.+.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHH
Confidence 34555555 999999999999999999999986 445577888887621 22457788999999
Q ss_pred HhcCCCCCCCc---------ccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCCCccc---c----
Q 008191 175 VDLHCLPPSVE---------PRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFPEYGQ---L---- 228 (574)
Q Consensus 175 ~~L~I~~~d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~~yg~---L---- 228 (574)
+.|||. +|.- .+.|++.+...+++++|+++|++|.-. ...|.........|+ +
T Consensus 189 ~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~ 267 (592)
T 3al0_C 189 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 267 (592)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEEC
Confidence 999996 6654 378999999999999999999999621 111111100000111 0
Q ss_pred c--CcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc
Q 008191 229 S--GRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306 (574)
Q Consensus 229 s--~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp 306 (574)
. .....++..|.- .....+..||++||. .|.|.||++|+. .....|.+..| -|.|++ +
T Consensus 268 ~~~~~~~~D~v~G~~---~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvi--rG~D~~-~ 327 (592)
T 3al0_C 268 LPGKTSFEDLLKGYM---EFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGEDHL-S 327 (592)
T ss_dssp CSSCCEECCTTTCSE---ECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCC--EEGGGG-G
T ss_pred CCCCceeeeccccee---eeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEE--EchhhH-h
Confidence 0 001111112211 111223458888875 388999988853 23344544333 478843 2
Q ss_pred cchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCC
Q 008191 307 HHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHY 371 (574)
Q Consensus 307 H~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~ 371 (574)
|....+++..+++..+| .| .|..++ ..+|.|||||.|+ +++.++.+ .|.|+++|.|++...+
T Consensus 328 ~t~~q~~l~~alg~~~P-~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 328 NTPKQLMIYEAFGWEAP-VF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp GHHHHHHHHTTTTCCCC-BC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred CHHHHHHHHHHhCCCCC-eE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 33333344456655543 34 677776 4589999999999 68999987 5999999999988543
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-16 Score=165.54 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=158.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|. +.-.|+.-|+|.|.. . -...+.+.+.++|+.||+. +
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~---------R----~~~~~~~~I~~dl~wlGl~-w 67 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR-----NGGRFIVRIEDTDRA---------R----YVPGAEERILAALKWLGLS-Y 67 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT---------S----CCTTHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCc---------c----cChHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999988888774 445799999999853 1 1346788999999999997 5
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeecC--ce---------eecCCCCCCcccccCccc-ccccCCCc
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVDG--DV---------YFSVDKFPEYGQLSGRKL-EDNRAGER 241 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~--~v---------~f~~~~~~~yg~Ls~~~~-~~~~~g~~ 241 (574)
|-. .+.|++.+...+++++|+++|++|.-.- .. -|+ ..|..++.... ..+..|..
T Consensus 68 d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~----~~cr~l~~~e~~~~~~~g~~ 143 (468)
T 1j09_A 68 DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYD----GRARNIPPEEAEERARRGEP 143 (468)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCC----CGGGGSCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCC----CcccCCCHHHHHHHHhcCCC
Confidence 655 4889999999999999999999995310 00 111 11333332100 00111211
Q ss_pred ------------cc--------cCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 242 ------------VA--------VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 242 ------------v~--------~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+. +.....+..||++||. .|.|.||++|+. .....|.+.. +-|.
T Consensus 144 ~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~githv--irG~ 207 (468)
T 1j09_A 144 HVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMGVTDV--IRAE 207 (468)
T ss_dssp CEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEE--EEEG
T ss_pred ceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCCCCeE--EECh
Confidence 00 0011122357777764 378999998854 2334554433 3488
Q ss_pred cccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC---CCC
Q 008191 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS---PIN 376 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~---~~~ 376 (574)
|+. .|.....++..+++..+| . |.|..++ ..+|+|||||.|++ ++.++.+ .|.|+++|-|++...+.. .-.
T Consensus 208 D~~-~~t~~q~~l~~alg~~~p-~-~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~ 283 (468)
T 1j09_A 208 EWL-VSTPIHVLLYRAFGWEAP-R-FYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREI 283 (468)
T ss_dssp GGG-GGHHHHHHHHHHHTCCCC-E-EEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSC
T ss_pred hhh-hhHHHHHHHHHHcCCCCC-e-EEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccC
Confidence 853 334444455566765544 3 4787775 56899999999998 8888886 599999999998854432 245
Q ss_pred CCHHHHHH
Q 008191 377 YSVVQLES 384 (574)
Q Consensus 377 fs~~~l~~ 384 (574)
|+.+.+.+
T Consensus 284 ~~~~el~~ 291 (468)
T 1j09_A 284 FTLEEFIQ 291 (468)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHh
Confidence 88766544
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=164.15 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=152.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|- +...++.-|+|.|.. .-...+.+.+.++|+.|||. +
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 91 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRWCGLD-W 91 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999988877775 456789999999853 12447788999999999996 6
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCC--Cccc-------cc--Ccc
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFP--EYGQ-------LS--GRK 232 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~--~yg~-------Ls--~~~ 232 (574)
|.- .+.|++.+...+++++|+++|++|.-. ...|-.. +. ..|+ +. ...
T Consensus 92 De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~--~~~~~~G~~~~iR~k~~~~~~~ 169 (488)
T 3afh_A 92 DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP--HEYKEKGHPVTIKFKVLPGKTS 169 (488)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC--HHHHHTTCCEEEEECCCSSEEE
T ss_pred CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch--hhHHhcCCCceEEEECCCCcee
Confidence 654 388999999999999999999999621 0111111 00 0010 00 000
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
..++..|. +.....+..||+++|. .|.|.||++|+. .....|.+-.| -|.|+ +.|.+
T Consensus 170 ~~D~v~G~---~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mgIThVi--RG~D~----l~~tp 226 (488)
T 3afh_A 170 FEDLLKGY---MEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGEDH----LSNTP 226 (488)
T ss_dssp EEETTTEE---EEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTTCSEEE--EEGGG----GGGHH
T ss_pred EEecccee---EeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcCCCEEE--Echhh----hhCHH
Confidence 01111111 0001122347777775 378999988763 23345554443 48884 55555
Q ss_pred HH---HhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC--CCCCCHHHH
Q 008191 313 AQ---SCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS--PINYSVVQL 382 (574)
Q Consensus 313 A~---~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~--~~~fs~~~l 382 (574)
.| ..+++.++| .|.|..+++ .+|+|||||.|+ +++.++.+ .|.|++++.|++...+.. +--|+.+.+
T Consensus 227 ~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~ 300 (488)
T 3afh_A 227 KQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEK 300 (488)
T ss_dssp HHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHH
T ss_pred HHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHH
Confidence 44 456665554 347878774 589999999999 68999887 599999999998854432 134555544
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=156.26 Aligned_cols=239 Identities=19% Similarity=0.207 Sum_probs=149.4
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++..++++|. +...|+..++|.|.+ .....|.+.|.++|+.|||. +
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlGl~-~ 91 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLGLD-Y 91 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Confidence 4999999999999999987777764 667899999999862 11357899999999999997 4
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------C----CcccccCcccccccCCCcc-
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------P----EYGQLSGRKLEDNRAGERV- 242 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~----~yg~Ls~~~~~~~~~g~~v- 242 (574)
|. ..+.|+|++..++++++|+++|++|.- ||.... + .|-.++.........|...
T Consensus 92 d~~~~~qS~r~~~y~~~~~~Li~~G~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~ 166 (490)
T 4g6z_A 92 DEGPYYQMQRMDRYREVLAQMQEKGLVYPC-----YMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPV 166 (490)
T ss_dssp SEEEEEGGGCHHHHHHHHHHHHHTTSEEEE-----CC-------------------CCCCTTCCCTTCCCCCCCTTCCCE
T ss_pred CCCCcccccCHHHHHHHHHHHHHCCCEEeC-----CCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCce
Confidence 54 468899999999999999999999942 222110 0 1112221110000111110
Q ss_pred -ccCC-----------Cc-------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccc
Q 008191 243 -AVDS-----------RK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDL 303 (574)
Q Consensus 243 -~~~~-----------~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl 303 (574)
.+.. .+ ....||++.|. .|.|.+|+.|.. -....|-+-.| =|.|+
T Consensus 167 ~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------------DG~ptY~lA~vV-DD~~mgIThVi--RG~D~ 230 (490)
T 4g6z_A 167 LRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARP-------------DGTPMYNFCVVV-DDLDMGITHVI--RGDDH 230 (490)
T ss_dssp EEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEE--EEGGG
T ss_pred EEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEee-------------CCCccchhHHHH-HHHhcCCCEEE--ecccc
Confidence 0000 00 00123333322 367888876643 22234543333 38885
Q ss_pred cCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhccCC--CCCCCCCH
Q 008191 304 VFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHY--RSPINYSV 379 (574)
Q Consensus 304 ~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~--~~~~~fs~ 379 (574)
+ ....-.+.+..|++..+| .| .|...++- +|+||||+.|. +++.++.+ .|.|++++-|++.-.+ ...--||.
T Consensus 231 l-~~tprq~~l~~aLG~~~P-~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~ 306 (490)
T 4g6z_A 231 V-NNTPRQINILRALGGEVP-VY-AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTR 306 (490)
T ss_dssp G-GGHHHHHHHHHHTTCCCC-EE-EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCH
T ss_pred c-cChHHHHHHHHHcCCCCC-eE-EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCH
Confidence 3 222223344456666654 34 77777654 79999999987 68888875 6999999999988533 33344787
Q ss_pred HHHHHH
Q 008191 380 VQLESA 385 (574)
Q Consensus 380 ~~l~~a 385 (574)
+.+.+.
T Consensus 307 ~eli~~ 312 (490)
T 4g6z_A 307 EQFVEW 312 (490)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776554
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=133.45 Aligned_cols=223 Identities=20% Similarity=0.152 Sum_probs=141.5
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|+++....++|- ..| .|+.=|+|.|. ..-...+.+.+.++|+.||+. +
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~--~gG---~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~-w 72 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGG---TFVFRIEDTDA-------------QRDSEESYLALLDALRWLGLD-W 72 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCT-------------TTCCHHHHHHHHHHHHHHTCC-C
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEECcCCC-------------cccChHHHHHHHHHHHHcCCC-c
Confidence 4899999999999999999999985 344 57777888863 223346788999999999997 4
Q ss_pred CC---------cccccccHHHHHHHHHHHHHCCceeeecCceeecCCC-------------CCC----cccccCccc-cc
Q 008191 183 SV---------EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK-------------FPE----YGQLSGRKL-ED 235 (574)
Q Consensus 183 d~---------~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~-------------~~~----yg~Ls~~~~-~~ 235 (574)
|- ..+.|++.+.-.+++++|+++|.+|.- ||... .+. |-.++.... ..
T Consensus 73 Degp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c-----~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~ 147 (498)
T 2ja2_A 73 DEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHA-----FSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY 147 (498)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE-----CCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH
T ss_pred CCCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEEe-----CCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh
Confidence 54 457789999999999999999999952 11110 011 111221000 00
Q ss_pred ccCCCc--cccCCC-----------------ccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCcee
Q 008191 236 NRAGER--VAVDSR-----------------KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDI 296 (574)
Q Consensus 236 ~~~g~~--v~~~~~-----------------k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~di 296 (574)
...|.. +.+... -....||++.|. .|.|.+|+.|..- ....|. +.
T Consensus 148 ~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~ptY~lA~vVD-D~~mgi--th 211 (498)
T 2ja2_A 148 LAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA-------------SGDPLYTLVNPCD-DALMKI--TH 211 (498)
T ss_dssp HHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-------------TSCBCHHHHHHHH-HHHTTC--CE
T ss_pred hccCCCceEEEECCCCceEEEecccceEeecccccCcceeEcc-------------CCCcchhhHHHHH-hhhcCC--CE
Confidence 111221 000000 001124443332 3778888766422 223443 33
Q ss_pred eeccccccCccchHHHHHHhhc-----cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc
Q 008191 297 HGGGMDLVFPHHENEIAQSCAA-----CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT 369 (574)
Q Consensus 297 h~~G~Dl~fpH~~~~~A~~~a~-----~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~ 369 (574)
-+-|.|++ .+....+++..++ +.++| .| .|..+++ .+|.||||+.|+ ++++++.+ .|.|+++|.|++.-
T Consensus 212 viRG~D~~-~~t~~q~~l~~aL~~~g~g~~~P-~~-~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 212 VLRGEDLL-PSTPRQLALHQALIRIGVAERIP-KF-AHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp EEEEGGGG-GGHHHHHHHHHHHHHTTSCCCCC-EE-EEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred EEEChhhh-hccHHHHHHHHHHHhhcCCCCCC-eE-EEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 34688855 2333344555666 55443 44 6777764 689999999999 58888887 59999999999885
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-11 Score=128.53 Aligned_cols=252 Identities=18% Similarity=0.169 Sum_probs=145.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|++++...++|- +.| .|+.=|+|.|.. . -...|.+.+.++|+.||+. +
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G---~fiLRieDtD~~---------R----~~~~~~~~I~~~L~wlGl~-w 90 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGG---KFLLRIEDTDQS---------R----YSPEAENDLYSSLKWLGIS-F 90 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTC---EEEECBCCCCTT---------S----CCHHHHHHHHHHHHHHTCC-C
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCC---EEEEEeCcCCCC---------c----CCHHHHHHHHHHHHHcCCC-C
Confidence 5899999999999999999999875 234 688889998832 1 1236778999999999996 4
Q ss_pred CCcc---------cccccHHHHHHHHHHHHHCCceeeecCceeecCCC------------------CCCcccccCccccc
Q 008191 183 SVEP---------RVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------------FPEYGQLSGRKLED 235 (574)
Q Consensus 183 d~~~---------r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------------~~~yg~Ls~~~~~~ 235 (574)
|--| +.|++.+.-.+++++|+++|.+|.- ||... +..|-.++......
T Consensus 91 De~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C-----~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~ 165 (512)
T 4gri_A 91 DEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC-----YCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVEN 165 (512)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE-----CCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHH
T ss_pred CcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc-----ccchHHHHHHHHhhhccCCCCccchhhcccchhhhhh
Confidence 4322 5678899999999999999999953 22210 01111121110000
Q ss_pred -ccCCCc-c-ccCCC-ccCc--cchhhcccccCCCCccccCC---cCcCCCCccchhHHHHhhhCCCceeeeccccccCc
Q 008191 236 -NRAGER-V-AVDSR-KKNP--ADFALWKSAKEGEPFWESPW---GPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306 (574)
Q Consensus 236 -~~~g~~-v-~~~~~-k~~~--~Df~lwk~~~~g~~~w~~~W---G~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp 306 (574)
...|.. + .+... ..+. .|...-..........+..| ..|.|.+|+.|+.- ....|- ..-+=|.|++ +
T Consensus 166 ~~~~~~~~~~R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVD-D~~mgI--THViRG~D~l-~ 241 (512)
T 4gri_A 166 ALIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVD-DYLMKI--THVLRAQEWV-S 241 (512)
T ss_dssp HHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHH-HHHTTC--SEEEEEGGGG-G
T ss_pred hhhhhccceeeecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceec-ccccCC--ceeccccccc-c
Confidence 001110 0 00000 0000 01110000000000000011 13678888776332 222343 3334478854 3
Q ss_pred cchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCC-CCCCCCHHH
Q 008191 307 HHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYR-SPINYSVVQ 381 (574)
Q Consensus 307 H~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~-~~~~fs~~~ 381 (574)
.....+.+..+++.++|. |.|...++. +|+|+||+.|. .++.+..+ .|-|+++.=|++.- .+. ..--||.+.
T Consensus 242 sTp~q~~l~~alg~~~P~--y~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~e 318 (512)
T 4gri_A 242 SGPLHVLLYKAFKWKPPI--YCHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND 318 (512)
T ss_dssp GHHHHHHHHHHHTCCCCE--EEEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHH
T ss_pred ccHHHHHHHHHcCCCCCe--EEecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHH
Confidence 344444555666666543 478887765 79999999987 56777765 69999999887764 333 235688887
Q ss_pred HHHH
Q 008191 382 LESA 385 (574)
Q Consensus 382 l~~a 385 (574)
|.+.
T Consensus 319 li~~ 322 (512)
T 4gri_A 319 LEQF 322 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=94.91 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=52.5
Q ss_pred hhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHh
Q 008191 288 AYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366 (574)
Q Consensus 288 ~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~l 366 (574)
..+-...++.++|.|+.. |.+.-.-....++.+++ +.+|+.++. ++|+|||||.||+|++.| +++++|..+
T Consensus 165 D~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki 236 (323)
T 2cyb_A 165 DIAHLGVDLAVGGIDQRK-IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKI 236 (323)
T ss_dssp HHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHH
T ss_pred HHHhcCCCEEEechhhHH-HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHH
Confidence 333346789999999874 55443333333333333 346778774 689999999999999987 499999999
Q ss_pred hcc
Q 008191 367 IGT 369 (574)
Q Consensus 367 l~~ 369 (574)
.+.
T Consensus 237 ~~a 239 (323)
T 2cyb_A 237 RKA 239 (323)
T ss_dssp HTS
T ss_pred Hhc
Confidence 885
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=89.88 Aligned_cols=208 Identities=18% Similarity=0.133 Sum_probs=108.1
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
....||.-|.|.+||||....+. -.+.|...|++|.++. .|.- .++.. ..+|.+ ..++..+..+++.++
T Consensus 13 ~~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I--aD~h-a~t~~----~~dp~~-~~~~~~~~~~~~lA~ 81 (340)
T 2g36_A 13 MRILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV--ADWH-ALTTH----YDDVSK-LKEYTRDLVRGFLAC 81 (340)
T ss_dssp CEEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE--CHHH-HHHHH----TTCCTT-HHHHHHHHHHHHHHT
T ss_pred CeEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE--ecce-eecCC----CCCHHH-HHHHHHHHHHHHHHh
Confidence 34567888999999999876542 3344556899998875 3321 12211 245544 445556677788889
Q ss_pred CCCCCC--CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 178 HCLPPS--VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 178 ~I~~~d--~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
|+. |+ .+...|+.. +..++.-.| .+....|.|.... .+|....-+
T Consensus 82 Gld-p~k~~if~qS~~~-~~~el~~~l-----------------~~~~~v~~l~r~~-------------~~k~~~~r~- 128 (340)
T 2g36_A 82 GID-PEKSVIFVQSGVK-EHAELALLF-----------------SMIVSVSRLERVP-------------TYKEIKSEL- 128 (340)
T ss_dssp TCC-TTTSEEEEGGGCT-HHHHHHHHH-----------------HTTSCHHHHHTCH-------------HHHTC-----
T ss_pred CCC-hhHeEEEECCchH-HHHHHHHHH-----------------HccCCHHHHHHhH-------------HHHhHHHHh-
Confidence 996 43 222233321 122221111 1111122221100 000000000
Q ss_pred hcccccCCCCccccCCcCcCC-CCccchhHHHHhhhCCCceeeeccccccCccchHHH--HHHhhc-cC---CCCceEEE
Q 008191 256 LWKSAKEGEPFWESPWGPGRP-GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI--AQSCAA-CN---NSHISYWI 328 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~P-gWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~--A~~~a~-~~---~~~~~~~~ 328 (574)
.++.+.+ |-+....-|+...+-+..++.++|.|+. +|.+.-. |.-... .+ ..|.-+..
T Consensus 129 --------------~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~ 193 (340)
T 2g36_A 129 --------------NYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQV-YHIELTREIARRFNYLYDEVFPEPEAILS 193 (340)
T ss_dssp -----------------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGH-HHHHHHHHHHHHHHHHSCCCCCCCEEEEC
T ss_pred --------------ccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchH-HHHHHHHHHHHHhhhhcccccCCchhhhc
Confidence 0000111 1122233444555556789999999987 4655333 332211 12 23333333
Q ss_pred EeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 329 HNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 329 h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|+-+|. ++|.|||||.||.|++.| +|+.++=.+.+.
T Consensus 194 ~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 194 RVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp CSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred cccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 344443 489999999999999988 788888888774
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.1e-06 Score=85.91 Aligned_cols=79 Identities=25% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHhhhCCCceeeeccccccCccchH--HHHHHhhc-cC---CCCceEE-EEeeEEE-eCCcccccccCceeehhhhhh
Q 008191 284 AMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCAA-CN---NSHISYW-IHNGFVT-IDSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 284 am~~~~lG~~~dih~~G~Dl~fpH~~~--~~A~~~a~-~~---~~~~~~~-~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~ 355 (574)
-|+...+-+..++.++|.|+. +|.+. ++|.-... .+ ..|..+. .++-+|. ++|+|||||.+|.|++.|
T Consensus 130 LQAaDil~~~~~~vpvG~DQ~-~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d--- 205 (322)
T 3tzl_A 130 LMAADILLFDTRIVPVGKDQI-QHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS--- 205 (322)
T ss_dssp HHHHHHHHTTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC---
T ss_pred HHHHHHHHhCCcEEEeccchH-HHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC---
Confidence 344444445678999999987 55543 33433221 11 1222221 0123333 589999999999999876
Q ss_pred ccChhhHHHHhhc
Q 008191 356 LYHPLALRLFLIG 368 (574)
Q Consensus 356 ~~~~d~lR~~ll~ 368 (574)
+++.++=.+.+
T Consensus 206 --~p~~i~~KI~~ 216 (322)
T 3tzl_A 206 --SEKTLKKQISS 216 (322)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHHHh
Confidence 57777766665
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0002 Score=73.78 Aligned_cols=86 Identities=24% Similarity=0.064 Sum_probs=48.0
Q ss_pred HHhhhCCCceeeeccccccCccchHHH--HHHh--hcc--CCCCceEEEEe---eEEE-eCC-cccccccCceeehhhhh
Q 008191 286 SAAYLGHSFDIHGGGMDLVFPHHENEI--AQSC--AAC--NNSHISYWIHN---GFVT-IDS-EKMSKSLGNFFTIRQVM 354 (574)
Q Consensus 286 ~~~~lG~~~dih~~G~Dl~fpH~~~~~--A~~~--a~~--~~~~~~~~~h~---g~v~-~~G-~KMSKS~Gn~i~~~d~l 354 (574)
+...+-+..++.++|.|+. +|.+.-. |.-. .++ ...|. . +|+ -+|. ++| +|||||.||.|++.|=
T Consensus 134 aaDil~~~~~lvp~G~DQ~-~~i~l~rdla~r~n~~~g~~f~~P~-~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~- 209 (337)
T 2el7_A 134 AADILIYKADTVPVGEDQV-QHIELTREIARRFNHLFGETFPEPQ-A-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP- 209 (337)
T ss_dssp HHHHHHTTCCEEECCGGGC-HHHHHHHHHHHHHHHHHSSCCCCCE-E-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-
T ss_pred HhhHHhhCCcEEEcccchH-HHHHHHHHHHHHHHhhcCcccCCCe-e-ecccccccccCCCCccccCCCCCCeeeCcCC-
Confidence 3333435678999999987 4655333 3221 112 12232 3 333 2433 589 9999999999998773
Q ss_pred hccChhhHHHHhhcc--CCCCCCCCCH
Q 008191 355 ELYHPLALRLFLIGT--HYRSPINYSV 379 (574)
Q Consensus 355 ~~~~~d~lR~~ll~~--~~~~~~~fs~ 379 (574)
|+.++=.+.+. .....+.++.
T Consensus 210 ----p~~i~~Ki~~a~td~~~~~~~~~ 232 (337)
T 2el7_A 210 ----EESIWQKIQHLPDDPQRIRLSDP 232 (337)
T ss_dssp ----HHHHHHHHHTCCCCC--------
T ss_pred ----HHHHHHHHHhCCCCCccccccCC
Confidence 77888777774 3333444443
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.8e-06 Score=85.46 Aligned_cols=72 Identities=17% Similarity=0.043 Sum_probs=37.7
Q ss_pred hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eC-CcccccccCce-eehhhhhhccChhhHHHH
Q 008191 289 YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-ID-SEKMSKSLGNF-FTIRQVMELYHPLALRLF 365 (574)
Q Consensus 289 ~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~-G~KMSKS~Gn~-i~~~d~l~~~~~d~lR~~ 365 (574)
.+-...++.++|.|+. +|.+.-.-....++..++ +.+|+-+|. ++ |+|||||.||. |++.|= ++.++=-
T Consensus 178 ~l~~~~~~v~~G~DQ~-~~~~l~rdl~~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kK 249 (394)
T 2dlc_X 178 EQFLDVDCQFGGVDQR-KIFVLAEENLPSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKK 249 (394)
T ss_dssp HHHTTCSEEEEEGGGH-HHHHHHHHHGGGGTCCCC--EEEEECCCCCCC----------CCSCBTTCC-----HHHHHHH
T ss_pred HhhhCCCEEecCccHH-HHHHHHHHHHHHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHH
Confidence 3335678899999986 455444444444444433 336666664 57 99999999996 888663 5555555
Q ss_pred hhc
Q 008191 366 LIG 368 (574)
Q Consensus 366 ll~ 368 (574)
+.+
T Consensus 250 I~k 252 (394)
T 2dlc_X 250 INS 252 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-05 Score=80.00 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=47.3
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.....+|--|.|++|||| ++.+..++++++..|..|.++ ++|.. +.. ....+++++. ++..++.+++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh---~v~~~~~~~lQ~~~g~~v~i~--I~D~~-a~~----~r~~~~e~i~-~~~~~~~~~~ 148 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEE---YITLEFARYLQDAFNIQVIIQ--ILDDI-KVL----NREATINEAS-KMSNDLMKYI 148 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGG---HHHHHHHHHHHHHHCCEEEEE--ECHHH-HHH----TTSCCHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHH---HHHHHHHHHHHHhcCCeEEEE--eCchH-Hhh----cCCCCHHHHH-HHHHHHHHHH
Confidence 43344557888889999999 444445555444468888877 55532 111 1225666554 5555777888
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
-++|+.
T Consensus 149 lA~GlD 154 (386)
T 3hzr_A 149 LAFGFN 154 (386)
T ss_dssp HHTCCC
T ss_pred HHcCCC
Confidence 999996
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-05 Score=80.20 Aligned_cols=72 Identities=17% Similarity=0.011 Sum_probs=40.7
Q ss_pred hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCc-eeehhhhhhccChhhHHHHh
Q 008191 289 YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQVMELYHPLALRLFL 366 (574)
Q Consensus 289 ~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d~l~~~~~d~lR~~l 366 (574)
++-...++.++|.|+. +|.+.-.-....++..++ +.+|+.++. ++|+|||||.|| .|++.|= |+.++=.+
T Consensus 174 il~~~a~~v~~G~DQ~-~~~~l~rdl~~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi 245 (372)
T 1n3l_A 174 EEYLKVDAQFGGIDQR-KIFTFAEKYLPALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKL 245 (372)
T ss_dssp HHHTTCSEEEEEGGGH-HHHHHHHHHGGGGTCCCC--EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHH
T ss_pred HHHhcCCEEEcChhHH-HHHHHHHHHHHHcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHH
Confidence 3334678999999986 455443333334433333 345666654 689999999999 7888663 77777777
Q ss_pred hc
Q 008191 367 IG 368 (574)
Q Consensus 367 l~ 368 (574)
.+
T Consensus 246 ~~ 247 (372)
T 1n3l_A 246 KK 247 (372)
T ss_dssp HT
T ss_pred HH
Confidence 66
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=82.51 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=46.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||+.+. -.+ +.+...|+++++..+ |+++ ++.. ..++++ .+++..++.+++.++|
T Consensus 30 ~vy~G~~PTg~lHlGhl~~l---~~~-~~lQ~~g~~~~~~i~-D~~a--~~~~----~~~~e~-i~~~~~~~~~~~~a~G 97 (314)
T 2zp1_A 30 SAYIGFEPSGKIHLGHYLQI---KKM-IDLQNAGFDIIILLA-DLAA--YLNQ----KGELDE-IRKIGDYNKKVFEAMG 97 (314)
T ss_dssp EEEEEECCCSSCBHHHHHHH---HHH-HHHHHTTEEEEEEEC-HHHH--HHTT----CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEEccCCCCCcchhhHHHH---HHH-HHHHHCCCCEEEEEe-cceE--ecCC----CCCHHH-HHHHHHHHHHHHHhcC
Confidence 44556666689999993333 233 444456999877654 1121 1110 124444 4566788999999999
Q ss_pred CCCCCCccccccc
Q 008191 179 CLPPSVEPRVSDH 191 (574)
Q Consensus 179 I~~~d~~~r~s~~ 191 (574)
+. ..+...|+.
T Consensus 98 ~d--~~~~~qs~~ 108 (314)
T 2zp1_A 98 LK--AKYVYGSEF 108 (314)
T ss_dssp CC--CEEEEGGGT
T ss_pred CC--eEEEECChh
Confidence 85 445444543
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.70 E-value=5.5e-05 Score=78.85 Aligned_cols=77 Identities=19% Similarity=0.120 Sum_probs=48.5
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eC-----------------Ccccccc-cC
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-ID-----------------SEKMSKS-LG 345 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~-----------------G~KMSKS-~G 345 (574)
++...+-+..++.++|.|+. +|++.-.-....++.+.+ +.+|+-+|. ++ |+||||| .+
T Consensus 169 QaaDil~~~~~~v~~G~DQ~-~~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~ 245 (364)
T 2cya_A 169 QVSDIFYMDLDIALGGMDQR-KAHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE 245 (364)
T ss_dssp HHHHHHHTTCSEEEEEGGGH-HHHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGG
T ss_pred HHhhHHhcCCCEEeccchHH-HHHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCC
Confidence 33344445678999999987 455444433333443333 236666654 46 7899999 78
Q ss_pred ceeehhhhhhccChhhHHHHhhcc
Q 008191 346 NFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 346 n~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|.|++.|= |+.++=.+.+.
T Consensus 246 ~~I~L~d~-----p~~i~~Ki~~a 264 (364)
T 2cya_A 246 TAVFVVDS-----DDDIRRKIRKA 264 (364)
T ss_dssp GSCBTTCC-----HHHHHHHHHTS
T ss_pred CEeeccCC-----HHHHHHHHHhC
Confidence 99998763 67777666653
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=75.86 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred CceeeeccccccCccchH--HHHHHhhc-c---C-----CC----CceEEEEeeEEE-eCCcccccccCceeehhhhhhc
Q 008191 293 SFDIHGGGMDLVFPHHEN--EIAQSCAA-C---N-----NS----HISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~--~~A~~~a~-~---~-----~~----~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
..++.++|.|+. +|-+. ++|.-.-. + + -| ...+-+++-+|. ++|+|||||.||.|++.|= .
T Consensus 232 ~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY--Q 308 (392)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT--T
T ss_pred CccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC--C
Confidence 578999999984 56543 22322100 0 0 00 122446666664 5899999999999998772 3
Q ss_pred cChhhHHHHhhcc
Q 008191 357 YHPLALRLFLIGT 369 (574)
Q Consensus 357 ~~~d~lR~~ll~~ 369 (574)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 4566666666654
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=9.5e-05 Score=76.65 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhc---cC---CCCceEEEEeeEEE-eCCc-ccccccCceeehhhhhhc
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA---CN---NSHISYWIHNGFVT-IDSE-KMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~---~~---~~~~~~~~h~g~v~-~~G~-KMSKS~Gn~i~~~d~l~~ 356 (574)
|+...+-+..++.++|.|+. +|.+.-.-..... .+ ..|.-+..|+-+|. ++|. |||||.||.|++.|=
T Consensus 154 QAaDil~~~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~--- 229 (351)
T 1yi8_B 154 QAADIAAFGATLVPVGDDQL-PMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS--- 229 (351)
T ss_dssp HHHHHHHHTCSEEEECGGGH-HHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC---
T ss_pred HHhhHHhcCCCEEEecCCcH-HHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC---
Confidence 33333334678999999987 4655333222211 12 23332222233433 4887 999999999987664
Q ss_pred cChhhHHHHhhc
Q 008191 357 YHPLALRLFLIG 368 (574)
Q Consensus 357 ~~~d~lR~~ll~ 368 (574)
|+.++=.+.+
T Consensus 230 --p~~i~~Ki~~ 239 (351)
T 1yi8_B 230 --ADEVARKVMG 239 (351)
T ss_dssp --HHHHHHHHHT
T ss_pred --HHHHHHHHHh
Confidence 6666666665
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00048 Score=72.32 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=47.3
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|.| .+||||. |.+..++++++..|..|..+ + +|.- ++.....+++++ +++..++.++
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~~~~v~i~--I---~D~~--~~l~~~~~~e~i-~~~~~~~~~~ 144 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHL---IPFMFTKWLQDSFRVPLVIQ--M---TDDE--KFYFRNIPMEQV-EAMTTENIKD 144 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGS---HHHHHHHHHHHHHTCCEEEE--E---CHHH--HHHHSCCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeecCCCccchHHHH---HHHHHHHHHHHhcCCcEEEE--E---cchH--HHhcCCCCHHHH-HHHHHHHHHH
Confidence 44455667888888 7999996 44445555555558877776 2 2221 122223555554 4566678888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 145 ~lA~GlD 151 (395)
T 3i05_A 145 IIAMGFD 151 (395)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8889986
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00048 Score=71.89 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=41.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+|||| .++.-...+.+...|++|+++.+ |.|+ ++. ...|.++.++ +.+...+.+++.++|
T Consensus 58 ~iy~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~~lIa-D~ha--~i~--d~~~~~~~~i-~~~~~~~~~~~~a~G 128 (373)
T 3vgj_A 58 ICYDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFIFWIA-DWFA--HLN--NKMSGDLKKI-KKVGSYFIEVWKSCG 128 (373)
T ss_dssp EEEEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEEEEEC-HHHH--HHT--TGGGGCHHHH-HHHHHHHHHHHHHTT
T ss_pred eEEeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEEEEEe-ccee--Eec--CCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 3456766778999999 22222212334557999887765 2222 010 1123444443 455566678899999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 129 ~d 130 (373)
T 3vgj_A 129 MN 130 (373)
T ss_dssp CC
T ss_pred CC
Confidence 96
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00031 Score=72.74 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=36.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-e-CC-ccccccc-Cceeehhhh
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-I-DS-EKMSKSL-GNFFTIRQV 353 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~-~G-~KMSKS~-Gn~i~~~d~ 353 (574)
..|+.++|.|+. +|.+.-.=....++...+ +.+++.+|. + +| +|||||. +|.|++.|=
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdia~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~ 247 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEYANDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHHHHHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC
T ss_pred CCcEEEeccChH-HHHHHHHHHHHHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecCC
Confidence 578899999987 454433322233333333 235666654 4 56 6999999 688987653
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0005 Score=72.03 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=44.8
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
.+.+| +|--|.|.+||||.-.++ +.|+|.. .|++|++..+ |.+. ++. ..+.+++++ +++..+..+++
T Consensus 73 p~~i~-sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha--~~~---~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 73 GFFLY-TGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEK--FLF---KENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCEEE-EEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHH--HHH---CSSCCHHHH-HHHHHHHHHHH
T ss_pred CeEEE-eccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHH--hhc---CCCCCHHHH-HHHHHHHHHHH
Confidence 34444 454455999999966553 2344555 7999888765 3332 111 113455544 45666778888
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
.++|+.
T Consensus 141 lA~GlD 146 (392)
T 3jxe_A 141 IAVGFD 146 (392)
T ss_dssp HTTCCC
T ss_pred HHhCcC
Confidence 999996
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00041 Score=72.76 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=46.0
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~~e~a~~~~~~f~~ 172 (574)
++.....||--|. |.+||||. |.+..++++++..|..|.+. +.|.. +.... ..+++++ +++..++.+
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~---v~~~~~~~lQ~~~~~~v~i~--I~D~~-----~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHL---VPFLFTKYLQDTFKVPLVIQ--LTDDE-----KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTH---HHHHHHHHHHHHHCCCEEEE--ECHHH-----HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHH---HHHHHHHHHHHhcCCCeEee--ccChH-----HHhhccCCCHHHH-HHHHHHHHH
Confidence 4333455777788 78999994 44445666555557776663 22322 21222 4555554 456667788
Q ss_pred HHHhcCCC
Q 008191 173 DMVDLHCL 180 (574)
Q Consensus 173 ~l~~L~I~ 180 (574)
++.++|+.
T Consensus 141 ~~lA~GlD 148 (393)
T 3hv0_A 141 DIIACGFD 148 (393)
T ss_dssp HHHTTCCC
T ss_pred HHHHcCCC
Confidence 88899986
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=73.63 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=42.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||....+.- +.+ +. .|+++++..+ |.|+- + . ..+++++ .++..++.+++-++|
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l~~--~~~-lQ-~g~~~~~~Ia-D~ha~-~-~-----~~~~e~i-~~~~~~~~~~~la~G 69 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGALRQ--FVE-LQ-HEYNCYFCIV-DQHAI-T-V-----WQDPHEL-RQNIRRLAALYLAVG 69 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHH--HHH-HT-TTSEEEEEEC-HHHHT-T-S-----CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH--HHH-HH-cCCcEEEEEe-Cceee-c-C-----CCCHHHH-HHHHHHHHHHHHHhC
Confidence 35677777799999998766521 112 23 3999866544 22210 0 0 0355544 456668888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 70 ld 71 (328)
T 1i6k_A 70 ID 71 (328)
T ss_dssp CC
T ss_pred CC
Confidence 96
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00036 Score=73.41 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=45.7
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|.| .+||||. |.+..++++++..|..|.+. +.|.- +++.+ ..+++++ +++..++.++
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~g~~~~i~--IaD~~-a~l~~----~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHT---IPFLLCKYMQDAFKIRLVIQ--ITDDE-KFLWK----SMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGH---HHHHHHHHHHHHHTCCEEEE--ECHHH-HHHHS----SCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHH---HHHHHHHHHHHhcCCcEEEE--eeChH-HHcCC----CCCHHHH-HHHHHHHHHH
Confidence 44445557888887 8999994 44445555444458777664 22321 22221 2555554 4566678888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 168 ~lA~GlD 174 (406)
T 3tze_A 168 IVTLGFD 174 (406)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8899985
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=70.36 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=46.8
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||.-+++ .++++++..|++++++.+ |.++ .+. ....+++. ++++..+..++
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~~lQ~~~g~~~i~lI~-D~ta--~l~---~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTKWLQEVFDVPLVIELT-DDEK--FLF---KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHH--HHH---CTTCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHHHHHHHcCCeEEEEEe-cccc--eeC---CCCCCHHH-HHHHHHHHHHH
Confidence 3344566777788 899999976544 344444448998877776 2111 111 11245444 55666677788
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 170 ~lA~GlD 176 (432)
T 2ip1_A 170 IIAVGFD 176 (432)
T ss_dssp HHTTTCC
T ss_pred HHHhCCC
Confidence 8888885
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=74.54 Aligned_cols=74 Identities=12% Similarity=-0.015 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
....||--|.|.+|||| .++.-+..+.+...|++|++..+ |-|+. | . ...|.+++++ +.+...+.+++.++
T Consensus 41 ~~vy~G~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIa-D~ha~-~-~--d~~~~~~e~i-~~~~~~~~~~~lA~ 111 (690)
T 3p0j_A 41 IRCYDGFEPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVA-DWFAL-M-N--DKVGGELEKI-RIVGRYLIEVWKAA 111 (690)
T ss_dssp EEEEEEECCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEEC-CGGGG-G-G--CTTTTHHHHH-HHHHHHHHHHHHHT
T ss_pred ceEEeeecCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEe-eeEEE-e-c--CCCcchHHHH-HHHHHHHHHHHHHc
Confidence 34567777888999999 32222223345567999877665 33321 0 0 0122333333 44556677788999
Q ss_pred CCC
Q 008191 178 HCL 180 (574)
Q Consensus 178 ~I~ 180 (574)
|+.
T Consensus 112 GlD 114 (690)
T 3p0j_A 112 GMD 114 (690)
T ss_dssp TCC
T ss_pred CCC
Confidence 985
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00087 Score=70.01 Aligned_cols=78 Identities=22% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCC-------CCceEEEEeeEEE-eCC------------------c
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-------SHISYWIHNGFVT-IDS------------------E 338 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-------~~~~~~~h~g~v~-~~G------------------~ 338 (574)
|+...+-+..|+.++|.|+. +|++.-.-....++.. .+..+.+++.+|. ++| +
T Consensus 172 QaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~ 250 (375)
T 2cyc_A 172 QVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQM 250 (375)
T ss_dssp HHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhh
Confidence 34444445678999999987 5655333332333220 1122335656654 577 8
Q ss_pred cccccc-CceeehhhhhhccChhhHHHHhhc
Q 008191 339 KMSKSL-GNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 339 KMSKS~-Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
|||||. +|.|++.|= |+.++=.+.+
T Consensus 251 KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 251 KMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp BGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred cccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 999998 788988764 6677766655
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.008 Score=62.74 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-.++.- + +.|. .|++|++... |.|. ++ ...+++++ .++..+...++.+.|+
T Consensus 38 i~sG~~PTG~lHLGhyvGal~~--~-~~LQ-~~~~~~~~Ia-D~hA--lt-----~~~~~~~l-r~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMKQ--F-VELQ-HDYNSYFCIV-DQHA--IT-----VPQDRLEL-RKNIRNLAALYLAVGL 104 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHHH--H-HHTT-TTSEEEEEEC-HHHH--TT-----SCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred EEEeeCCCCcchHHHHHHHHHH--H-HHHH-ccCcEEEEEe-ccee--ee-----cCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5678888899999997554421 1 1222 4999876542 3332 11 13455554 4555678888999999
Q ss_pred C
Q 008191 180 L 180 (574)
Q Consensus 180 ~ 180 (574)
.
T Consensus 105 D 105 (388)
T 3prh_A 105 D 105 (388)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00068 Score=70.13 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=42.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||....+.- + +.|.. |+++++..+ |.|. -+- ..+|+++ ..+..++.+++.++|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~--~-~~lQ~-~~~~~~~Ia-D~ha-~~~------~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQS--L-IELQE-QCQLFVFVA-DLHS-ITV------DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGG--H-HHHHH-HSEEEEEEC-HHHH-TTS------CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH--H-HHHHh-CCcEEEEEc-Chhh-ccC------CCCHHHH-HHHHHHHHHHHHHhC
Confidence 45667677799999997755411 1 12344 888766543 2121 000 0455544 356677888899999
Q ss_pred CCCCC
Q 008191 179 CLPPS 183 (574)
Q Consensus 179 I~~~d 183 (574)
+. |+
T Consensus 73 ld-p~ 76 (348)
T 2yy5_A 73 LD-PQ 76 (348)
T ss_dssp CC-TT
T ss_pred CC-hh
Confidence 96 44
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00088 Score=72.06 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=46.1
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++.....||--|. |.+||||.-+++ .+. +|.. .|++|+++.+=. ...+.. ..++++ +.++..++..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~-~lQ~~~g~~~iilI~D~---~a~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTK-WLQDVFNVPLVIQMTDD---EKYLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH---HHH-HHHHHHTCCEEEEECHH---HHHHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHH-HHHHHhCCcEEEEEecc---eeeecC----CCCHHH-HHHHHHHHHH
Confidence 4444556777788 899999976654 333 4554 899877665521 111211 355555 4455566777
Q ss_pred HHHhcCCC
Q 008191 173 DMVDLHCL 180 (574)
Q Consensus 173 ~l~~L~I~ 180 (574)
++-++|+.
T Consensus 221 ~~lA~GlD 228 (477)
T 1r6t_A 221 DIIACGFD 228 (477)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 78888985
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00097 Score=70.82 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=46.0
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||.-+++ .++++++..|++++++.+= . ...+.. ..++++ +.++..++..+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~~lQ~~~G~~~iilIgD--~-ta~igd----~lt~e~-i~~n~~~~~~~ 174 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMTD--D-EKYLWK----DLTLDQ-AYGDAVENAKD 174 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCCEEEEECH--H-HHHHHS----SCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEec--c-eeeecC----CCCHHH-HHHHHHHHHHH
Confidence 4444556777788 899999976554 3444333389987776552 1 112221 355555 44555666777
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 175 ~lA~GlD 181 (437)
T 1r6u_A 175 IIACGFD 181 (437)
T ss_dssp HHTTTCC
T ss_pred HHHhCCC
Confidence 8888885
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0037 Score=63.94 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=49.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..+|.+||.|+. +|.+.-.=.....+..++ +-+++-.|. ++|+|||||.||.|++.| ++-+|+.++=++.+.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 578999999987 565543322233333332 224445543 489999999999999988 677888888777664
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0041 Score=64.46 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=37.9
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=...-.+..++ +-++.-++ .++|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 678999999987 555543333333333332 33555555 3589999999999999987 456788888888774
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.013 Score=62.12 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=46.4
Q ss_pred CceeeeccccccCccchHHHHHHhhc-cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAA-CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~-~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
..++.++|.|+. +|.+.-.=...-. +..++ +-+++-++. .+|+|||||.||.|++.| +.-+|+.++=++.+
T Consensus 186 ~~~i~~gG~DQ~-~ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 186 NCKIQVGGSDQW-GNITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 678999999987 4554433222333 33332 335555554 589999999999999887 34456666666655
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=62.48 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCc-eeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=.....+..++ +-++.-++. .+|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQW-GNIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTH-HHHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 578999999987 454433322223333332 335555554 589999999999 999877 355677777777664
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=62.96 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=48.7
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCc-ccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=.....+..++ +.+++-++. .+|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~~--~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSPQ--VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCCc--eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999987 566544433333433332 335556554 5885 99999999999988 888888888775
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0064 Score=64.25 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred CceeeeccccccCccchHHHHHHhhc-cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAA-CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~-~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=..... +..++ +-+++-++. .+|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 185 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 185 GCRLQIGGSDQW-GNITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 578999999987 4554333222333 33332 335555554 589999999999999887 345677777666663
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=87.92 E-value=0.9 Score=46.54 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
..+|--|.|.+||||.-.++ ..+.++ .++++++... |.|. ++ ...+|+ ..+++..+...++.+.|
T Consensus 18 i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia-D~hA--~t-----~~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 18 VFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV-DLHA--IT-----ARQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC-HHHH--TT-----SCCCHH-HHHHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe-ccee--ec-----CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 44566677999999965443 333222 3788766543 3332 11 124554 44566677888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 84 lDp 86 (346)
T 3n9i_A 84 IDP 86 (346)
T ss_dssp CCT
T ss_pred CCc
Confidence 963
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=85.25 E-value=2.5 Score=44.74 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=46.7
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||. |.+-.++++++.-|..|.+. ++|.. +.+ .+...+++++ +++..++.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~---v~~~~l~~lQ~~~g~~v~I~--IgD~~-a~~---~r~~lt~E~I-~~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHL---LPFIFTKYLQDAFKCYVVIQ--ITDDE-KFL---RNRSLSYAEV-DSYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHH---HHHHHHHHHHHHHTCEEEEE--ECHHH-HHH---HCTTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHH---HHHHHHHHHHHccCceEEEE--eeCcH-Hhh---cccCCCHHHH-HHHHHHHHHH
Confidence 4444566788888 89999994 44445555555557777764 33332 211 2224566554 4556677888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 159 ~lA~GlD 165 (451)
T 3foc_A 159 IIACGFD 165 (451)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8888985
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=1.9 Score=44.65 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
.|+.....+|--|.|.+||||.-.++ -.+++...|++|++.. .|+|- +. -...+..+..+.+..++..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I-aD~ha--~t----~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI-ADAEA--FA----VRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE-CHHHH--HH----TTCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE-ecchh--hc----cCCCCCHHHHHHHHHHHHHH
Confidence 34444555777888999999954332 3455566799996543 23332 11 11234455566777788888
Q ss_pred HHhcCCCC
Q 008191 174 MVDLHCLP 181 (574)
Q Consensus 174 l~~L~I~~ 181 (574)
+-++|+.+
T Consensus 136 ~lA~GlDP 143 (372)
T 3a04_A 136 MIALGLDP 143 (372)
T ss_dssp HHHHTCCT
T ss_pred HHHcCCCh
Confidence 99999963
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=83.90 E-value=0.42 Score=50.65 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=31.8
Q ss_pred eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCc--ccccccCc-eeehhh
Q 008191 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSE--KMSKSLGN-FFTIRQ 352 (574)
Q Consensus 296 ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~--KMSKS~Gn-~i~~~d 352 (574)
+..+|.|+. +|.+.-.-....++.+++. + +++-++. ++|. |||||.+| .|.+.|
T Consensus 290 ~VPvG~DQ~-~hlel~Rdia~rfn~~~p~-~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQD-PYFRLARDLAPRMGHPKNA-Y-LLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTH-HHHHHHHHHTTTTTSCCCE-E-EEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchH-HHHHHHHHHHHHhCCCCCe-e-ecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 668899987 4554332222223333333 3 5556654 4774 99999997 676543
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=82.30 E-value=0.46 Score=48.65 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-.++. -+.+++. |+++++..+ |.|. .+ . ..+++ -..++..++..++.++|+
T Consensus 9 v~sG~~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha-~~-~-----~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 9 VLSGVQPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHA-IT-V-----RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEEEECSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHH-TT-S-----CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred EEeCcCCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-ccee-Ec-C-----CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 456777779999999765441 1223333 588766533 3332 11 1 24554 445666788889999999
Q ss_pred CC
Q 008191 180 LP 181 (574)
Q Consensus 180 ~~ 181 (574)
.+
T Consensus 76 Dp 77 (341)
T 3sz3_A 76 DP 77 (341)
T ss_dssp CT
T ss_pred Ch
Confidence 63
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=80.66 E-value=1.1 Score=46.54 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=33.8
Q ss_pred CCCceeeeccccccCccchHHHHHHhhcc----CCCCceEEEEeeEEE-eCCcccccccCc-eeehhh
Q 008191 291 GHSFDIHGGGMDLVFPHHENEIAQSCAAC----NNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQ 352 (574)
Q Consensus 291 G~~~dih~~G~Dl~fpH~~~~~A~~~a~~----~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d 352 (574)
|+...+...|.|+. ||.+.-.-...-++ .+.|. -+|+-++. ++|.|||||..| .|.+.|
T Consensus 206 gy~a~~VPVG~DQ~-~hleltRdiA~rfn~~~~~~~P~--~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 206 GYRHVVVPVGADQD-PHLRLTRDLADRMAGVVELERPA--STYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCCEEEEEEGGGH-HHHHHHHHHHHHTTTTSCCCCCE--EEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred CccceecccchhhH-HHHHHHHHHHHHhcCcccccChh--hhhhcccCCCCCCccCCCCCCcccccCC
Confidence 45555677799987 57654332222222 12333 24455543 589999999854 665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 574 | ||||
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 3e-99 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 5e-55 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 8e-45 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-44 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 4e-42 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 7e-18 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 6e-12 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 4e-16 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 5e-15 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 2e-13 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 6e-09 | |
| d1f7ua2 | 348 | c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR | 7e-10 | |
| d1j09a2 | 305 | c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS | 2e-08 | |
| d1iq0a2 | 370 | c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS | 8e-08 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-07 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-04 | |
| d1li5a1 | 87 | a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy | 6e-07 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 301 bits (772), Expect = 3e-99
Identities = 172/311 (55%), Positives = 219/311 (70%), Gaps = 1/311 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++NT++R++E KP G+VGMYVCG+T YDL HIGH R +V FDV+ RYLR LGY++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +++ R E H+D L+ L P +EPR + H+ I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I++ Q++ G AY D GDV F V P YG LS + L+ +AG RV V K+NP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + +++YW+H+G V +D EKMSKSLGNFFT+R V++ Y +R FL+ HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 375 INYSVVQLESA 385
+NYS L+ A
Sbjct: 302 LNYSEENLKQA 312
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 186 bits (472), Expect = 5e-55
Identities = 43/314 (13%), Positives = 93/314 (29%), Gaps = 24/314 (7%)
Query: 86 RELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
++++ + E + + G+TP H+G+ R T ++ LR GYEV ++ + D D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 146 -----------------DKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRV 188
I+ + S + + +F +++ L +
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 189 SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRK 248
+ I + + Y + + R + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREI-AKQPPLPENWWPAMVYCPEHRREAEIIE 186
Query: 249 KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHH 308
+ +K + E + + G + W ++ + D G D +
Sbjct: 187 WDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGS 243
Query: 309 ENEIAQSCA-ACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLF 365
+ + + FV I + KMS S GN + + E+ P +R
Sbjct: 244 SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFI 303
Query: 366 LIGTHYRSPINYSV 379
I +
Sbjct: 304 YARHRPNKEIKIDL 317
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 160 bits (404), Expect = 8e-45
Identities = 50/325 (15%), Positives = 100/325 (30%), Gaps = 52/325 (16%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR 164
H+GH ++ DV RY R G+EV ++ I+ +A +LG P +
Sbjct: 12 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 71
Query: 165 RYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGFAYRVDGDVYFSVDK-- 221
+E D + + S+ + ++I +++ +NGF + +K
Sbjct: 72 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 131
Query: 222 -FPEYGQLSGRKLED-----------------NRAGERVAVDSRKKNPADFALWKSAKEG 263
P+ +SG A+ + N ++
Sbjct: 132 FLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQW 191
Query: 264 EPFWESPWGPGR----------------------------PGWHIECSAMSAAYLGHSFD 295
+ ++P+ +
Sbjct: 192 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 251
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
H G D+V+ H A + + ++H G+VT++ KMSKS G F +
Sbjct: 252 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 356 LYHPLALRLFLI--GTHYRSPINYS 378
+ +LR + + I+ +
Sbjct: 311 HFDADSLRYYYTAKLSSRIDDIDLN 335
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 159 bits (401), Expect = 2e-44
Identities = 50/332 (15%), Positives = 87/332 (26%), Gaps = 53/332 (15%)
Query: 100 YVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE 157
YV Y H+GHA V D L R+ R GY ++ + + + A GE
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 158 DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT-QILDNGFAYRVDGDVY 216
DP + R F + L + ++ ++ ++ + G Y + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 217 FSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKE-------------- 262
+ V Y + + G V ++ +
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEG 185
Query: 263 ------------------GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
P PWG P + + L +
Sbjct: 186 YRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEA 245
Query: 305 FPHHENEIAQSCAACNNSHIS-----------------YWIHNGFVTIDSEKMSKSLGNF 347
+ + + + D KMSK+LGN
Sbjct: 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 348 FTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
++E Y ALR +L+ Y S
Sbjct: 306 VDPFALLEKYGRDALRYYLLREIPYGQDTPVS 337
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 153 bits (386), Expect = 4e-42
Identities = 45/338 (13%), Positives = 86/338 (25%), Gaps = 64/338 (18%)
Query: 105 TPYDLSHIGHAR-VYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLS 163
H GH Y+ D+ RYLR G +V ++ + I RA + G P +
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIV 71
Query: 164 RRYCEEFHQDMVDLHCLPPSVEPRVSD-HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF 222
+ E+ H + + +NG + +
Sbjct: 72 DEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131
Query: 223 ---PEYGQLSGRKLE--------------------------------------------- 234
P+ + GR +
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE 191
Query: 235 ---DNRAGERVAVDSRKKNPADFALWKSAK-EGEPFWESPWGPGRPGWHIECSAMSAAYL 290
+ V +++ L+ + + R G E
Sbjct: 192 RAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID 251
Query: 291 GHSFDIHGGGMDLVFPHHENEIAQSCAACNNS---------HISYWIHNGFVTIDSEKMS 341
G + IH G D + H A A N ++T++ +K S
Sbjct: 252 GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 311
Query: 342 KSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
S + + ++++ LR +L ++S
Sbjct: 312 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 84.2 bits (207), Expect = 7e-18
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 8/182 (4%)
Query: 209 YRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWE 268
Y +G++ + + L + K + + G E
Sbjct: 273 YAENGEIIMTKETVNHVADLFAEHGSNIWFEREA-----KDLLPEGFTHPGSPNGTFTKE 327
Query: 269 SPWGPGRPGWHIECSAMSAAYLGHSF--DIHGGGMDLVFPHHENEIAQSCAACNNSHISY 326
+ + SF D++ G D + I S A S +
Sbjct: 328 TDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKF 387
Query: 327 WIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
+ +GFV + +KMSKSLGN QV++ RL++ T Y + + S L+
Sbjct: 388 LLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQT 447
Query: 386 SE 387
S+
Sbjct: 448 SD 449
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 65.4 bits (158), Expect = 6e-12
Identities = 28/187 (14%), Positives = 49/187 (26%), Gaps = 18/187 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GHA + D + RY G+ YV + I + G D +S E
Sbjct: 64 HMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123
Query: 171 HQDMVDLH---------------CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDV 215
++ ++ I + ++ D G Y+ V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 216 YFSVDKFPEYGQLSGRKLEDNRAG---ERVAVDSRKKNPADFALWKSAKEGEPFWESPWG 272
Y+S + D R A + + ++ WG
Sbjct: 184 YWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWG 243
Query: 273 PGRPGWH 279
R
Sbjct: 244 KTRIYNM 250
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 78.4 bits (192), Expect = 4e-16
Identities = 41/307 (13%), Positives = 73/307 (23%), Gaps = 32/307 (10%)
Query: 85 KRELVKPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142
K V GK + P H+GHA D L RY R G+E ++
Sbjct: 22 KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81
Query: 143 DVDDKIIARANEL----GEDPISLSR------------RYCEEFHQDMVDLHCLP---PS 183
L G+ L R + + L
Sbjct: 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSRE 141
Query: 184 VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVA 243
+ ++ G AYR V + L A
Sbjct: 142 AFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYA 201
Query: 244 VDSRKKNPAD---FALWKSAKEGEPFWESPWGPGR--------PGWHIECSAMSAAYLGH 292
+ + + K + G+ + W+I +
Sbjct: 202 IFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA 261
Query: 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQ 352
+ +++ P E SC AC + + S S + +
Sbjct: 262 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 321
Query: 353 VMELYHP 359
++ ++P
Sbjct: 322 DLKAFYP 328
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 75.0 bits (183), Expect = 5e-15
Identities = 31/237 (13%), Positives = 57/237 (24%), Gaps = 15/237 (6%)
Query: 164 RRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP 223
+ + P R+ ++ + + R ++
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK 245
Query: 224 EYGQLSGRKLEDNRAGERVAVDSRKKNPAD--FALWKSAKEGEPFWESPWGPGRPGWHIE 281
++ P + ++ E
Sbjct: 246 DWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFS 305
Query: 282 CSAMSAAYLGHSF-----------DIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHN 330
+ + LG D+ G D++F + +
Sbjct: 306 SALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH 365
Query: 331 GFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESA 385
G V +KMSKS GN +++E Y ALR LI I + LE A
Sbjct: 366 GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA 422
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 70.4 bits (171), Expect = 2e-13
Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 8/221 (3%)
Query: 166 YCEEFHQDMVDLHCLPPSV-EPRVSDHMPHIID-----MITQILDNGFAYRVDGDVYFSV 219
+ +E ++ ++H +PP + E R + + +++D ++
Sbjct: 222 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAI 281
Query: 220 DKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWH 279
F E + + L + R VD + A + W H
Sbjct: 282 GSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLH 341
Query: 280 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSE 338
D G+D + + I +G + +
Sbjct: 342 YPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQ 401
Query: 339 KMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
KMSKS GN ++ + ALR ++ + +
Sbjct: 402 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 56.1 bits (134), Expect = 6e-09
Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 37/273 (13%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF--------------------TDV 144
T L H+GHA+ D+ RY GY + ++
Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREI 107
Query: 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILD 204
+ I R N+ + + + E F + + L + ++ I + + D
Sbjct: 108 EAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFD 167
Query: 205 NGFAYRVDGDVYFSVDKFPE-----------YGQLSGRKLEDNRAGERVAVDSRKKNPAD 253
G YR V + + L ++ K+
Sbjct: 168 RGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELI 227
Query: 254 FALWKSAKEGEPFWES---PWGPGRPGWHIECSAMSAAYLGHSFDIH-GGGMDLVFPHHE 309
+ E W W + S + G + +
Sbjct: 228 RNNQEIHWVPPHIKEGRYGEWLKNLVDWAL--SRNRYWGTPLPIWVCQACGKEEAIGSFQ 285
Query: 310 NEIAQSCAACNNSHISYWIHNGFVTIDSEKMSK 342
A++ + + V +
Sbjct: 286 ELKARATKPLPEPFDPHRPYVDQVELACACGGT 318
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (140), Expect = 7e-10
Identities = 30/270 (11%), Positives = 68/270 (25%), Gaps = 30/270 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV-----------------CYVRNFTDVDDKIIARAN 153
H GH R + L LG+EV + + + + +
Sbjct: 24 HAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 83
Query: 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG 213
L + + +++ EE ++ + E D + F
Sbjct: 84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG---DEEALKIWKRFREFSIE 140
Query: 214 DVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKN-----PADFALWKSAKEGEPFWE 268
+ + + + + ++ A+D K+ L K + +
Sbjct: 141 KYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK 200
Query: 269 SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ---SCAACNNSHIS 325
+ + AA + + ++ + AQ
Sbjct: 201 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAK 260
Query: 326 YWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
H F + MS G + ++E
Sbjct: 261 DLQHVNFGMVQ--GMSTRKGTVVFLDNILE 288
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 53.3 bits (127), Expect = 2e-08
Identities = 47/276 (17%), Positives = 76/276 (27%), Gaps = 38/276 (13%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+G A Y + R G VR D D AR E+ I + ++
Sbjct: 15 HVGTAY---IALFNYAWARRNG-GRFIVR-IEDTD---RARYVPGAEERILAALKWLGLS 66
Query: 171 HQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSG 230
+ + D P R S+ +P ++L G+AYR E G G
Sbjct: 67 YDEGPD--VGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDG 124
Query: 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGP----------------- 273
R + ++ K + G +
Sbjct: 125 RARNIPPEEAE---ERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS 181
Query: 274 -GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGF 332
G P +H+ G + I + P H A ++
Sbjct: 182 DGYPTYHLANVVDDHLM-GVTDVIRAEEWLVSTPIHVLL----YRAFGWEAPRFYHMPLL 236
Query: 333 VTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLI 367
D K+SK ++ + P ALR +L
Sbjct: 237 RNPDKTKISKRKS-HTSLDWYKAEGFLPEALRNYLC 271
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Score = 52.2 bits (124), Expect = 8e-08
Identities = 42/294 (14%), Positives = 79/294 (26%), Gaps = 51/294 (17%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVC---YVRNF-TDVDDKIIARANELGE-----DPIS 161
H+GH R D + R L + G EV Y+ + + + A +
Sbjct: 23 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82
Query: 162 LSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFS--- 218
+ R HQD P E + + + + +IL A + +
Sbjct: 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV 142
Query: 219 ----------VDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPAD--------------- 253
+ K + S A+
Sbjct: 143 WESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGT 202
Query: 254 ---------FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
F WK + P PG + SA + +D+
Sbjct: 203 ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDVR 260
Query: 305 FPHHENEIAQSCAACNNSHISYWIHN---GFVTIDSEKMSKSLGNFFTIRQVME 355
H + + + A ++ H+ V ++ +MS G ++ +V+E
Sbjct: 261 QSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GH + Y DVL R+ R GYEV + + A + G P + +
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 171 HQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220
+ + + L + ++ + ++ + G AYR G V +
Sbjct: 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK 161
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 24/223 (10%), Positives = 53/223 (23%), Gaps = 15/223 (6%)
Query: 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILD 204
D K + G+ P+ + E D + + D
Sbjct: 266 DLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHND 325
Query: 205 NGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGE 264
+ + VD++ + + L +R + D
Sbjct: 326 RLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVK-------------- 371
Query: 265 PFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHI 324
E G G + + + S + E+ ++ + +
Sbjct: 372 -VEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAEL 430
Query: 325 SYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
MSKS GN + ++ R+ ++
Sbjct: 431 RPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITIL 473
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (107), Expect = 6e-07
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 410 ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMR 469
AL+ + F F+ +M DD +T + L D + +N L
Sbjct: 7 ALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDM------- 59
Query: 470 LESLAALEKTIRNVLTVLGLM 490
+ A+ +R + VLGL+
Sbjct: 60 -AAANAMASHLRKLSAVLGLL 79
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.98 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.97 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.93 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.91 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.73 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 99.34 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 99.08 | |
| d1li5a1 | 87 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 98.53 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 98.49 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 98.47 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 98.45 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 98.04 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 98.02 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 97.9 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 97.9 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 97.87 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 97.87 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 97.75 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 97.6 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 97.54 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 97.0 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 96.22 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 95.73 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 85.2 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-63 Score=513.77 Aligned_cols=312 Identities=55% Similarity=0.999 Sum_probs=283.7
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
|+||||+||++++|+|.+|++|+||||||||||++||||+|++|++|+|+|+||+.|++|.+++|+||||.||...|++.
T Consensus 2 ~~~~~~~~~~~~~f~~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~ 81 (315)
T d1li5a2 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (315)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred ceEEeCCCCceeeeecCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCcccc
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
|++++++++++..+|.++++.++|..++.+++++++++++++.+++|.++|++|.. .+.+|++...++.||..+.....
T Consensus 82 ~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
T d1li5a2 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (315)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred hhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccccCcccccccc
Confidence 99999999999999999999999998899999999999999999999999999876 56688888888899988877766
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
....|..+......++|.|+.+||..+.+++.+.+.||.++|+|+++|.++-...||..++++++|.|+.++|+...+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~ 241 (315)
T d1li5a2 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (315)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred ccccCCcccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchh
Confidence 66667766666667788999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
..+..+..++.+|+|+|||+++|+|||||+||||+|+|+++.||+|++|||||+++++++++||+|.|.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~a~~ 314 (315)
T d1li5a2 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314 (315)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHH
T ss_pred hhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHhh
Confidence 9998888889999999999999999999999999999999999999999999999999999999999999876
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-50 Score=415.98 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=213.6
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
.-|.+..|||+|++||||+|++|++|+++|+||++||+|.||+|+||||+||+.+|+++|.++++++++|...|.++|+.
T Consensus 4 ~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 83 (350)
T d1pfva2 4 ILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAG 83 (350)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHH
Confidence 33444457888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccc-ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC---CcccccCcccccccCCCcc--ccCCCc--
Q 008191 177 LHCLPPSVEPRVS-DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP---EYGQLSGRKLEDNRAGERV--AVDSRK-- 248 (574)
Q Consensus 177 L~I~~~d~~~r~s-~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~---~yg~Ls~~~~~~~~~g~~v--~~~~~k-- 248 (574)
|||..+..+++.+ .|.+.+++++++|.++|++|+++..+|||+.+.. +...+++..++.... +.+ .+..++
T Consensus 84 l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~~g~~~~~~~~-~~~f~~l~~~~~~ 162 (350)
T d1pfva2 84 FNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDS-EHFFFDLPSFSEM 162 (350)
T ss_dssp TTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTTTCCCCEEEEE-EEEEECGGGGHHH
T ss_pred cCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceeccCCCccceec-chheeehHHHHHH
Confidence 9997555444444 5788888999999999999999999999987632 212223322211100 000 000000
Q ss_pred --------------cCccchhhcccccCCCCccccCC-cCcCCC--------CccchhHHHHh----------------h
Q 008191 249 --------------KNPADFALWKSAKEGEPFWESPW-GPGRPG--------WHIECSAMSAA----------------Y 289 (574)
Q Consensus 249 --------------~~~~Df~lwk~~~~g~~~w~~~W-G~g~Pg--------Whiecsam~~~----------------~ 289 (574)
.+...+.+++...+...+|..+| |...|. |...+..+... +
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (350)
T d1pfva2 163 LQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEY 242 (350)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHhhcCCCchhhHHHHHHHhhccCCccccccccccCCccccCCCCcccccccccccchhhhhhccccccccchhhhhc
Confidence 00012222222222223333433 333332 22222222111 1
Q ss_pred ---hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHh
Q 008191 290 ---LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366 (574)
Q Consensus 290 ---lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~l 366 (574)
.+...++|++|+|++||||++++||+.+....++.++|+| |||+++|+|||||+||+|++.|++++||+|+|||||
T Consensus 243 ~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~~-g~l~~~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l 321 (350)
T d1pfva2 243 WKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYY 321 (350)
T ss_dssp HBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEE-CCEEETTBSCCTTTTCCCBHHHHHHHSCHHHHHHHH
T ss_pred cccCCCcceeeccchhhHHHHHhhHHHHhhhcCCCccceEEec-ccEEECCeEccCcCCCCCCHHHHHHHCCHHHHHHHH
Confidence 1123458999999999999999999999988888877665 999999999999999999999999999999999999
Q ss_pred hcc--CCCCCCCCCHHHHHHHHHH
Q 008191 367 IGT--HYRSPINYSVVQLESASER 388 (574)
Q Consensus 367 l~~--~~~~~~~fs~~~l~~a~~~ 388 (574)
++. +..++++||++.|.+..|.
T Consensus 322 ~s~~~~~~~d~dfs~~~~~~~~N~ 345 (350)
T d1pfva2 322 TAKLSSRIDDIDLNLEDFVQRVNA 345 (350)
T ss_dssp HHHCCSSCCCEEECHHHHHHHHHH
T ss_pred HhhCCCCCCCCCCCHHHHHHHHHH
Confidence 984 4457899999999888763
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.1e-47 Score=393.30 Aligned_cols=290 Identities=22% Similarity=0.186 Sum_probs=225.0
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|||+|.|| |++||||+|++|++|+|+|+||++||+|.||+|+||+|+||+.+|+++|+++++++..+..+|.++++
T Consensus 4 ~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (348)
T d2d5ba2 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (348)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHH
Confidence 5788888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCcccc---------
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAV--------- 244 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~--------- 244 (574)
.+||. ++.+.|.. .++..++.+++++.++|++|++...+++|..+...+.............|...+.
T Consensus 84 ~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (348)
T d2d5ba2 84 LLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFR 162 (348)
T ss_dssp HTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEEC
T ss_pred hcCcc-ccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccccccCCCceEEecccccccc
Confidence 99996 55555543 5678888999999999999999999999988754443322111111112221110
Q ss_pred -CCC--------ccCccchh---------hccc-----ccCCCCccccCCcCcCCCCcc--------chhHHHHhh----
Q 008191 245 -DSR--------KKNPADFA---------LWKS-----AKEGEPFWESPWGPGRPGWHI--------ECSAMSAAY---- 289 (574)
Q Consensus 245 -~~~--------k~~~~Df~---------lwk~-----~~~g~~~w~~~WG~g~PgWhi--------ecsam~~~~---- 289 (574)
+.. ...+.... .|.. .....+.|..+||.++|+|+. ++.++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (348)
T d2d5ba2 163 MEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE 242 (348)
T ss_dssp GGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTT
T ss_pred hHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCcccccCCcccccchhccchhhhhhhcCCc
Confidence 000 00000000 0000 011234677889999997643 332222211
Q ss_pred -----hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHH
Q 008191 290 -----LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRL 364 (574)
Q Consensus 290 -----lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~ 364 (574)
.+...++|++|.|+.++|+....++..+....++.++|+|++++..+|+|||||+||+|++.|++++||+|+|||
T Consensus 243 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~ 322 (348)
T d2d5ba2 243 GEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRY 322 (348)
T ss_dssp CHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred hhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHH
Confidence 113567999999999999999999988888888899999988888999999999999999999999999999999
Q ss_pred Hhhcc-CCCCCCCCCHHHHHHHHHH
Q 008191 365 FLIGT-HYRSPINYSVVQLESASER 388 (574)
Q Consensus 365 ~ll~~-~~~~~~~fs~~~l~~a~~~ 388 (574)
||++. |+++|++||++.|.+..|.
T Consensus 323 ~l~~~~p~~~d~dFs~~~~~~~~n~ 347 (348)
T d2d5ba2 323 YLLREIPYGQDTPVSEEALRTRYEA 347 (348)
T ss_dssp HHHHHSCTTSCEECCHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHcC
Confidence 99985 9999999999999887763
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=6.1e-46 Score=387.07 Aligned_cols=281 Identities=17% Similarity=0.128 Sum_probs=213.0
Q ss_pred CCCCCCcCcchhhH-HHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 103 GVTPYDLSHIGHAR-VYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 103 gpt~yg~~HiGHar-~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
.|||||++||||+| +||.+|+++||+|++||+|.+++|+||+|+||+.+|+++|++++++++.+...+.+++..+++..
T Consensus 10 ~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T d1rqga2 10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISF 89 (361)
T ss_dssp CCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccccccccccc
Confidence 57899999999965 79999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCccccc-ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------CcccccCcccccccCCCc-cccC-------
Q 008191 182 PSVEPRVS-DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQLSGRKLEDNRAGER-VAVD------- 245 (574)
Q Consensus 182 ~d~~~r~s-~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~Ls~~~~~~~~~g~~-v~~~------- 245 (574)
++.+...+ ++...++.++..+.++|.+|++...+++|+.+.. .||.. .+......- +.+.
T Consensus 90 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~f~~~~~~~~~l~ 165 (361)
T d1rqga2 90 DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRP----ISFRDSAHYYIKMQDFAERLK 165 (361)
T ss_dssp SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCB----CEEEEEEEEEECGGGTHHHHH
T ss_pred ccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecccccccCCCc----ccccccceEEEecchhhhhhh
Confidence 44333323 6778889999999999999999999999987522 22221 000000000 0000
Q ss_pred ----CCccCccchhhccc-ccCCC----CccccCCcCc--------------------------------CCCCccchhH
Q 008191 246 ----SRKKNPADFALWKS-AKEGE----PFWESPWGPG--------------------------------RPGWHIECSA 284 (574)
Q Consensus 246 ----~~k~~~~Df~lwk~-~~~g~----~~w~~~WG~g--------------------------------~PgWhiecsa 284 (574)
.....|......+. ...+. ++++..||.+ +|||+++|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 245 (361)
T d1rqga2 166 RWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKK 245 (361)
T ss_dssp HHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHH
T ss_pred hcccccccccchhhhhhhccccccccccccccccccccCccccccCCCeEEEeecccccccccccccCcccCCchhHHHH
Confidence 00001100000000 00111 2233444444 4456667777
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccC---------CCCceEEEEeeEEEeCCcccccccCceeehhhhhh
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACN---------NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~---------~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~ 355 (574)
+.....|.+.++|++|.|+.|+|+++++|+..+.+. -++.+.+++||||+++|+|||||+||+|+|.|+++
T Consensus 246 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~ 325 (361)
T d1rqga2 246 YWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD 325 (361)
T ss_dssp HHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT
T ss_pred hhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHH
Confidence 776677888999999999999999999999998752 12234457789999999999999999999999999
Q ss_pred ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH
Q 008191 356 LYHPLALRLFLIGT-HYRSPINYSVVQLESASE 387 (574)
Q Consensus 356 ~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~ 387 (574)
+||+|+|||||++. ++++|++||++.|.+..|
T Consensus 326 ~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n 358 (361)
T d1rqga2 326 VFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 358 (361)
T ss_dssp TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred HcCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhc
Confidence 99999999999986 889999999999988766
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-44 Score=383.39 Aligned_cols=292 Identities=20% Similarity=0.202 Sum_probs=205.8
Q ss_pred CCCCceeEEEcC--CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc----CCCh------
Q 008191 92 KVEGKVGMYVCG--VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL----GEDP------ 159 (574)
Q Consensus 92 ~~~~~v~~y~cg--pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~----g~~~------ 159 (574)
.++++.++++|. |+|+|++||||+|++|.+||++||+|++||+|.|++|+|+||.+|...|++. |..+
T Consensus 29 ~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~ 108 (425)
T d1ivsa4 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGRE 108 (425)
T ss_dssp TTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTT
T ss_pred CCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHH
Confidence 345566777775 7777999999999999999999999999999999999999999999988874 4443
Q ss_pred ------HHHHHHHHHHHHHHHHhcCCCCCCCc--cccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccccc
Q 008191 160 ------ISLSRRYCEEFHQDMVDLHCLPPSVE--PRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLS 229 (574)
Q Consensus 160 ------~e~a~~~~~~f~~~l~~L~I~~~d~~--~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls 229 (574)
..++.+|.+.|.+++++||+. .|.. .+++ +|.+.+++++++|.++|++|+++..++||+.+...++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~lg~~-~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~ 187 (425)
T d1ivsa4 109 KFLERVWQWKEESGGTILKQLKRLGAS-ADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-CCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-cCcchhhcccchhhhhhhHHHHhhhhccCcccccceeecccccccccccccc
Confidence 345678889999999999997 3332 2333 6999999999999999999999999999988643221100
Q ss_pred CcccccccCCCcccc------------------CCCccCccc---------hhhcccc-cCCCCccccCCcCcCCCCccc
Q 008191 230 GRKLEDNRAGERVAV------------------DSRKKNPAD---------FALWKSA-KEGEPFWESPWGPGRPGWHIE 281 (574)
Q Consensus 230 ~~~~~~~~~g~~v~~------------------~~~k~~~~D---------f~lwk~~-~~g~~~w~~~WG~g~PgWhie 281 (574)
. .....+|..... ...+.++.. +..|... ++..+++...||.+.|.|+..
T Consensus 188 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~~isr~~~~g~~~~~~~~~ 265 (425)
T d1ivsa4 188 V--ETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCE 265 (425)
T ss_dssp E--EEETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCEECEECCSSSCCCCCEEET
T ss_pred c--ccccccCcccccccccchhhccchhhccchhhhhcCCcceeccccceeeehhhhhcCcceeecccccCCccceeecc
Confidence 0 000001110000 000000000 0001000 000112223444444422100
Q ss_pred -------------------h---------------hHHHHh-----------------hhCCCceeeeccccccCccchH
Q 008191 282 -------------------C---------------SAMSAA-----------------YLGHSFDIHGGGMDLVFPHHEN 310 (574)
Q Consensus 282 -------------------c---------------sam~~~-----------------~lG~~~dih~~G~Dl~fpH~~~ 310 (574)
| ...... -.+.+.|||++|+|+++||+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~~~p~di~~~G~Di~~~h~~~ 345 (425)
T d1ivsa4 266 DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSR 345 (425)
T ss_dssp TTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHHSCSBSCEEEEGGGTTTTHHH
T ss_pred CcceeecCccccccccccccccccCccccccCccccccccchhHHHHhhCCCcChHHHhCCCCceEEEEEehhhhHHHHH
Confidence 0 000000 0124679999999999999999
Q ss_pred HHHHHhhccCC-CCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH
Q 008191 311 EIAQSCAACNN-SHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASE 387 (574)
Q Consensus 311 ~~A~~~a~~~~-~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~ 387 (574)
++|++.++.++ ||.++++| ||+ +.+|+|||||+||+|+++|+|++||+|+|||||++. ++.+|++||++.+++++|
T Consensus 346 ~~a~~~~~~~~~p~~~v~~h-g~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 346 MEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp HHHHHHHHSSSCSBSEEEEE-CCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHH
T ss_pred HHHHHHHhcCCCccceEEEc-ceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhcCCCCCCCccCHHHhhhccC
Confidence 99999999875 66888765 775 579999999999999999999999999999999995 889999999999987765
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5e-42 Score=368.85 Aligned_cols=290 Identities=16% Similarity=0.147 Sum_probs=197.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCC-----------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGED----------------- 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~----------------- 158 (574)
+..++.++|+|+|++||||+|++|.+||++||+|++||+|.|++|+|+||.+|+.+|++++..
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (452)
T d1ilea3 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA 118 (452)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHH
T ss_pred CEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 456677789999999999999999999999999999999999999999999999999887753
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--ccCccc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LSGRKL 233 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls~~~~ 233 (574)
+++++..|.+++.+++..||+......++.| +|++.+++++.+|.++|++|.....++||+.+...+.. +.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~~~p 198 (452)
T d1ilea3 119 CRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYP 198 (452)
T ss_dssp HHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEE
T ss_pred HhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccccccccccccccCC
Confidence 4677788888999999999997432223333 69999999999999999999999999999876211100 000000
Q ss_pred ccccCCCcccc----------CCCcc-----------Ccc-----chhhccccc-CCCCccccCCcCcCCCCcc------
Q 008191 234 EDNRAGERVAV----------DSRKK-----------NPA-----DFALWKSAK-EGEPFWESPWGPGRPGWHI------ 280 (574)
Q Consensus 234 ~~~~~g~~v~~----------~~~k~-----------~~~-----Df~lwk~~~-~g~~~w~~~WG~g~PgWhi------ 280 (574)
.+.++|..++. ...+. .|. ....|.... +-..+.+..||.+.|-|+.
T Consensus 199 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~ 278 (452)
T d1ilea3 199 HCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKE 278 (452)
T ss_dssp BCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCC
T ss_pred CccCcCCceEEeeccchhhhhccchhhhhhhhcccccCcchhhhceeeeeccCCccceeecccccccCCccccccccCcc
Confidence 01111211110 00000 000 000010000 0001112234444332110
Q ss_pred -------------------------------c--------------------hhHH-HHhhhC------------CCcee
Q 008191 281 -------------------------------E--------------------CSAM-SAAYLG------------HSFDI 296 (574)
Q Consensus 281 -------------------------------e--------------------csam-~~~~lG------------~~~di 296 (574)
+ ++.. ....++ .+.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~ 358 (452)
T d1ilea3 279 EAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADF 358 (452)
T ss_dssp EECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSB
T ss_pred cccchhhhhhhhhccccCccccccccccccccccccccccccccccccccccccccchhhhccCccchhhhcccCCcchh
Confidence 0 0000 001111 24455
Q ss_pred eeccccc--cCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCC
Q 008191 297 HGGGMDL--VFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYR 372 (574)
Q Consensus 297 h~~G~Dl--~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~ 372 (574)
+++|+|+ .++|+..+++++. .+..+|.++++| ||+ +.+|+|||||+||+|+|.|+|++||+|+|||||++. +++
T Consensus 359 ~~~g~d~~~~~fh~l~~~~~l~-~~~~~~~~v~~h-g~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~ 436 (452)
T d1ilea3 359 IAEGIDQTRGWFNSLHQLGVML-FGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE 436 (452)
T ss_dssp EEEEGGGGGTHHHHHHHHHHHH-HSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSS
T ss_pred heecCceechhhHHHHHhHHHH-cCCCCCCeEEEe-eEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 6666655 4588888888876 445678888776 775 579999999999999999999999999999999885 999
Q ss_pred CCCCCCHHHHHHHHH
Q 008191 373 SPINYSVVQLESASE 387 (574)
Q Consensus 373 ~~~~fs~~~l~~a~~ 387 (574)
+|++||++.|+++.+
T Consensus 437 ~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 437 ADRRFGPNLVRETVR 451 (452)
T ss_dssp SCEECCHHHHHHHHH
T ss_pred CCCCcCHHHHhHHhc
Confidence 999999999998765
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-41 Score=363.61 Aligned_cols=290 Identities=20% Similarity=0.178 Sum_probs=209.6
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCCh------------HHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDP------------ISLS 163 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~------------~e~a 163 (574)
+..+...+|+++|.+||||+++++++|+++||+|++||+|.+++|+|+||.+|+.+|.+.|..+ ++++
T Consensus 49 ~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (450)
T d1ffya3 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (450)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhh
Confidence 3456666899999999999999999999999999999999999999999999999999988765 5568
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc-c-ccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCC
Q 008191 164 RRYCEEFHQDMVDLHCLPPSVE-P-RVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAG 239 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~~d~~-~-r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g 239 (574)
..+.+.+.+.+++||+.. |+. + +|+ +|...++++|.+|.++|++|++...|+||+.|...+....-....+.+++
T Consensus 129 ~~~~~~~~~~~~~lg~~~-D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~~~~~~r~~ 207 (450)
T d1ffya3 129 LEQIELQKKDFRRLGVRG-DFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTK 207 (450)
T ss_dssp HHHHHHHHHHHHTTTCCS-CTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEETTTC
T ss_pred hhhhhhHHHHHHHHhhhc-ccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCccccccccccccccccc
Confidence 899999999999999973 432 2 232 78999999999999999999999999999886322211000000111112
Q ss_pred CccccCC----------Ccc-----------Cc----cchhhcccccC-CCCccccCCcCcCCCCccchh----------
Q 008191 240 ERVAVDS----------RKK-----------NP----ADFALWKSAKE-GEPFWESPWGPGRPGWHIECS---------- 283 (574)
Q Consensus 240 ~~v~~~~----------~k~-----------~~----~Df~lwk~~~~-g~~~w~~~WG~g~PgWhiecs---------- 283 (574)
..+.... .+. -| .-+..|..... -..+....||.+.|-|+.++.
T Consensus 208 ~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~~ 287 (450)
T d1ffya3 208 KPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN 287 (450)
T ss_dssp CBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHH
T ss_pred CCceeeccccceeccccccccchhhcccccccccccceeeeccccCccchheeeecccccCcceeecCCCCEecchhhhH
Confidence 1111000 000 00 00011111000 001223456666665543210
Q ss_pred --------------------------------------------------H-HHHhh------hCCCceeeeccccccCc
Q 008191 284 --------------------------------------------------A-MSAAY------LGHSFDIHGGGMDLVFP 306 (574)
Q Consensus 284 --------------------------------------------------a-m~~~~------lG~~~dih~~G~Dl~fp 306 (574)
+ +.... ..+|.|+|++|+|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~~~~~P~d~~~~G~Di~r~ 367 (450)
T d1ffya3 288 HVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRG 367 (450)
T ss_dssp HHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTT
T ss_pred HHHHhhhhcCccccccccccccccccccccCCCCCcceeeeeeecccccccccccccccccccccCCCcccccCcchhhH
Confidence 0 00000 12467899999999999
Q ss_pred cchHHHHHHhhccCC-CCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHH
Q 008191 307 HHENEIAQSCAACNN-SHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLES 384 (574)
Q Consensus 307 H~~~~~A~~~a~~~~-~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 384 (574)
|+...++++.++.+. ||.++++ ||||+ .+|+|||||+||+|+|.|++++||+|+|||||+++++.+|++||++.|++
T Consensus 368 w~~~~~~~~~~~~~~~Pfk~v~~-hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~ 446 (450)
T d1ffya3 368 WFNSSITTSVATRGVSPYKFLLS-HGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQ 446 (450)
T ss_dssp HHHHHHHHHHHHHSSCSBSEEEE-ECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcceEEE-cceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHHH
Confidence 999888888888765 6778866 59976 58999999999999999999999999999999998999999999999998
Q ss_pred HHH
Q 008191 385 ASE 387 (574)
Q Consensus 385 a~~ 387 (574)
+.+
T Consensus 447 ~~~ 449 (450)
T d1ffya3 447 TSD 449 (450)
T ss_dssp HHH
T ss_pred hhc
Confidence 765
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=2.3e-32 Score=296.22 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=114.4
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+..|...+|+|+|.+|||||.+++++|+++||+|++|++|.|+.|+|+||.+|+.+|++.|+.++++++++...+++.++
T Consensus 34 ~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~ 113 (494)
T d1h3na3 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (494)
T ss_dssp EEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHH
Confidence 34556667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC
Q 008191 176 DLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF 222 (574)
Q Consensus 176 ~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~ 222 (574)
+||+. .|+ +.+|. +|...++++|.+|+++|++|+....++||+.|.
T Consensus 114 ~~g~~-~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~ 163 (494)
T d1h3na3 114 LMGIL-YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163 (494)
T ss_dssp HTTCC-CCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred hcCcc-cCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCcc
Confidence 99997 454 33443 688999999999999999999999999999863
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=3e-34 Score=289.49 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=152.4
Q ss_pred CCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCC--------------
Q 008191 92 KVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE-------------- 157 (574)
Q Consensus 92 ~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~-------------- 157 (574)
...+...++.|||||+|++||||+|++|++|+++|+||+.|++|.+++++||+|.++...+.....
T Consensus 14 ~~~k~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (317)
T d1irxa2 14 RGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPD 93 (317)
T ss_dssp SCCCSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCC
T ss_pred cCCCCeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHHhhhhhHHHhccCccccccc
Confidence 344567788899999999999999999999999999999999999999999999876544322111
Q ss_pred ---ChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccc
Q 008191 158 ---DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 158 ---~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
..............+..+.+++...........+.....+.......+-..........+.......+.. +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (317)
T d1irxa2 94 PWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE-NWWPAM 172 (317)
T ss_dssp TTSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT-TCCSEE
T ss_pred ccccccccchhhhhHHhhHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcccccceeeeeccccccc-cccccc
Confidence 1122223333344444444444311100000000000000000000000000000000000000000000 000000
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
...............+......|.......+.+...||.+.+.|...|... +.+.+.++|+.|+|++++|+.+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~d~~~~~~~~~~~~ 249 (317)
T d1irxa2 173 VYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDTGK 249 (317)
T ss_dssp EECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHHHH
T ss_pred hhhhccccccccccccccccceeeecccccccccccccCCcccccccchhh---hccCceeEEEecceecccchhhhHhh
Confidence 000000000000000000111111111122334456777788887766544 34557889999999999999999987
Q ss_pred Hhhcc--CCCCceEEEEeeEEEeCCc--ccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCC
Q 008191 315 SCAAC--NNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378 (574)
Q Consensus 315 ~~a~~--~~~~~~~~~h~g~v~~~G~--KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs 378 (574)
..++. +.++..+ +|+|||+++|+ |||||+||+|+++|+++.|++|++||++|+..+.++++|+
T Consensus 250 ~~~~~~~g~~~~~~-~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l~~~~~~~i~FD 316 (317)
T d1irxa2 250 EIIKEVYGKEAPLS-LMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKID 316 (317)
T ss_dssp HHHHHHHCCCCCBC-CEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEEC
T ss_pred hhhhhhcCCCCcEE-EEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhcCCCCCCCcCCC
Confidence 66543 3333434 67899999765 9999999999999999999999999999999889999997
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2e-26 Score=240.73 Aligned_cols=283 Identities=17% Similarity=0.126 Sum_probs=192.0
Q ss_pred cCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH---HHcC-----------
Q 008191 91 PKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA---NELG----------- 156 (574)
Q Consensus 91 p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A---~~~g----------- 156 (574)
|..+++|.+..++|+|.|++||||+|+++++|+|+|+|+..||+|....+++|+|.+|-.-+ +..+
T Consensus 3 p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~ 82 (370)
T d1iq0a2 3 PRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82 (370)
T ss_dssp CCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred CCCCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhh
Confidence 56678999999999999999999999999999999999999999999999999997753221 1111
Q ss_pred -------------------------------CChHHHHHHHHHHHHHHHHhcCCCCCCCccccccc--HHHHHHHHHHHH
Q 008191 157 -------------------------------EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH--MPHIIDMITQIL 203 (574)
Q Consensus 157 -------------------------------~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~--~~~i~~~i~~L~ 203 (574)
....+...++.....+++.+|||. .|.+...++. ...+..++..|.
T Consensus 83 ~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~-fD~~~~Es~l~~~~~~~~~i~~l~ 161 (370)
T d1iq0a2 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNAR-YDLLVWESDIVRAGLLQKALALLE 161 (370)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHT
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccee-eceeeeecccccccchhhhHhhhh
Confidence 112334455666678889999996 6777766643 235778899999
Q ss_pred HCCceeeec-----CceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcCC
Q 008191 204 DNGFAYRVD-----GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGRP 276 (574)
Q Consensus 204 ~kG~aY~~~-----~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~P 276 (574)
++|.+|+.+ |.++++.+.....+....+.+. -.+|...... .|.+ +||......+.|...++...+
T Consensus 162 ~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~-ksDG~~tY~t------~DiAy~~~K~~~~~~~~~~~~~~~~~~ 234 (370)
T d1iq0a2 162 QSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLL-RSNGTATYYA------KDIAFQFWKMGILEGLRFRPYENPYYP 234 (370)
T ss_dssp TSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEE-CTTSCBCHHH------HHHHHHHHHTTSSCCCEEEECCCSSCT
T ss_pred hccceeeccccccceEEEecCccccccccCcceeeE-eccCCceEec------cHHHHHhhhcccccccceeccccCccc
Confidence 999999764 6778876644222211111110 1234432211 2544 566554444556666666666
Q ss_pred CCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCC----CceEEEEeeEEEeCCcccccccCceeehhh
Q 008191 277 GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNS----HISYWIHNGFVTIDSEKMSKSLGNFFTIRQ 352 (574)
Q Consensus 277 gWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~----~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d 352 (574)
++.+.++-. +.....+|..+...|.-..||...+.+...+-+.+ .. ..+..|+|..+|+||||+.||+|+++|
T Consensus 235 ~i~i~~~d~--~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~-~hv~~g~v~~~g~kMStR~G~~v~l~d 311 (370)
T d1iq0a2 235 GLRTSAPEG--EAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKA-HHLAYETVLLEGRQMSGRKGLAVSVDE 311 (370)
T ss_dssp TCEEEEEEE--EECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTE-EEEEECCEEETTBCSCC----CCBHHH
T ss_pred eeEeecccc--ccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCCchhhce-eeEEEEEEecCCccccccCCCeeEHHH
Confidence 654433211 11222345444444555568888876665554322 12 224568899999999999999999999
Q ss_pred hhhc-------------------------cChhhHHHHhhccCCCCCCCCCHHHHHH
Q 008191 353 VMEL-------------------------YHPLALRLFLIGTHYRSPINYSVVQLES 384 (574)
Q Consensus 353 ~l~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 384 (574)
+|++ .|.+++||++|+.+..+++.|+++.+.+
T Consensus 312 ll~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~ls 368 (370)
T d1iq0a2 312 VLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALS 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhcCCCCCceECHHHhcc
Confidence 9986 8999999999999999999999998754
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.8e-24 Score=223.92 Aligned_cols=247 Identities=15% Similarity=0.087 Sum_probs=180.3
Q ss_pred CCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH------------------
Q 008191 92 KVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN------------------ 153 (574)
Q Consensus 92 ~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~------------------ 153 (574)
..+.+|.+..++|+|.||+||||+|++|++|+|+|+|+..||+|...++++|.|.+|-.-+.
T Consensus 5 ~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 84 (348)
T d1f7ua2 5 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 84 (348)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchh
Confidence 35678999999999999999999999999999999999999999999999999977642221
Q ss_pred -------------HcCC----------------------------ChHHHHHHHHHHHHHHHHhcCCCCCCCccccc-cc
Q 008191 154 -------------ELGE----------------------------DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DH 191 (574)
Q Consensus 154 -------------~~g~----------------------------~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~ 191 (574)
+.+. -++.+++...+.|.+++++|||. .|.+...+ -+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~-fD~~~~Es~~~ 163 (348)
T d1f7ua2 85 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIK-YDVYSGESQVS 163 (348)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSEEEEGGGCC
T ss_pred HHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccccc
Confidence 0110 12445677788999999999997 67665555 45
Q ss_pred HHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCC
Q 008191 192 MPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPW 271 (574)
Q Consensus 192 ~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~W 271 (574)
.+....+++.|.++|++|+.+|.+||+.+. +|.- .|-.+++++ +
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~---~g~~-----------------------~~~~vl~ks-D--------- 207 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLIDLTK---FNKK-----------------------LGKAIVQKS-D--------- 207 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGG---TCTT-----------------------TCEEEEECT-T---------
T ss_pred ccchHHHHHHHHhhccccccCCcccccchh---hccc-----------------------cccceeccC-C---------
Confidence 566778899999999999999999998643 2210 011222221 1
Q ss_pred cCcCCCCcc-chhHHHHhh--hCCCceeeeccccccCccchHHH---HHHhhccCCCCceEEEEeeEEEeCCcccccccC
Q 008191 272 GPGRPGWHI-ECSAMSAAY--LGHSFDIHGGGMDLVFPHHENEI---AQSCAACNNSHISYWIHNGFVTIDSEKMSKSLG 345 (574)
Q Consensus 272 G~g~PgWhi-ecsam~~~~--lG~~~dih~~G~Dl~fpH~~~~~---A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~G 345 (574)
|-+.+.. .|+++..++ ++....|.+.|.|+ +.+.. +.+.+++ ..+++.|.|..|-++ .||||++|
T Consensus 208 --G~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq----~~~~~~l~~~l~~lg-~~~~~~~~h~~~g~v--~kMStR~G 278 (348)
T d1f7ua2 208 --GTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQ----DLHAAQFFEILKQMG-FEWAKDLQHVNFGMV--QGMSTRKG 278 (348)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGG----HHHHHHHHHHHHHTT-CGGGGGEEEECCCCE--ESCCGGGT
T ss_pred --CccceecchHHhhhhhhhccCCCEEEEeccccc----chhhhhHHHHHHHhC-CCcccceeeecCCcc--ccccccCC
Confidence 1222221 344554444 35566688888884 33333 3444444 334555677777555 38999999
Q ss_pred ceeehhhhhhc----------------------------cChhhHHHHhhccCCCCCCCCCHHHHHH
Q 008191 346 NFFTIRQVMEL----------------------------YHPLALRLFLIGTHYRSPINYSVVQLES 384 (574)
Q Consensus 346 n~i~~~d~l~~----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~ 384 (574)
|+|+++|+|++ .+.+++||++|+.+..+++.|+++.+.+
T Consensus 279 ~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~ 345 (348)
T d1f7ua2 279 TVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS 345 (348)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC
T ss_pred CceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhcCCCCCCEECHHHhcC
Confidence 99999999975 7788999999999999999999998753
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=8.8e-18 Score=170.03 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=150.4
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++.+.++|- +.| .++.-+||.|.. .....|.+.+.++|+.||+. +
T Consensus 7 aPsPtG~lHiG~~rtal~n~~~Ak~--~~G---~~iLRidDtD~~-------------R~~~~~~~~I~~dL~wLgi~-w 67 (305)
T d1j09a2 7 APSPTGDPHVGTAYIALFNYAWARR--NGG---RFIVRIEDTDRA-------------RYVPGAEERILAALKWLGLS-Y 67 (305)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH--TTC---EEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCC---EEEEEeCcCCCc-------------cCchHHHHHHHHHHHHHhcC-c
Confidence 5999999999999999999999993 334 688889999832 11225889999999999997 4
Q ss_pred CC---------cccccccHHHHHHHHHHHHHCCceeeecCce-eecC-----CCCCC-cccccCcccc-cccCCCc--cc
Q 008191 183 SV---------EPRVSDHMPHIIDMITQILDNGFAYRVDGDV-YFSV-----DKFPE-YGQLSGRKLE-DNRAGER--VA 243 (574)
Q Consensus 183 d~---------~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v-~f~~-----~~~~~-yg~Ls~~~~~-~~~~g~~--v~ 243 (574)
|. ..+.|++++..++++++|+++|+||.-.-+- .+.. ..++. |..+.....+ ....|.. +.
T Consensus 68 D~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 147 (305)
T d1j09a2 68 DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIR 147 (305)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEE
T ss_pred ccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHHHHhhcCCcceEE
Confidence 43 4578899999999999999999999652111 0000 00111 1111100000 0011111 00
Q ss_pred cCCCccCccchhhcccccCCC-----CccccCCc---CcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHH
Q 008191 244 VDSRKKNPADFALWKSAKEGE-----PFWESPWG---PGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315 (574)
Q Consensus 244 ~~~~k~~~~Df~lwk~~~~g~-----~~w~~~WG---~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~ 315 (574)
+...+.+ ...|+..-.+. .....+|+ .|.|+||++|+..-. ..| ++..+-|.|++. +......+.
T Consensus 148 ~k~~~~~---~~~~~d~i~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvDD~-~~g--ithviRG~Dl~~-~t~~q~~l~ 220 (305)
T d1j09a2 148 LKVPRPG---TTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDH-LMG--VTDVIRAEEWLV-STPIHVLLY 220 (305)
T ss_dssp ECCCSSC---EEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHH-HTT--CCEEEEEGGGGG-GHHHHHHHH
T ss_pred EeccccC---CccccchhhceeeeccccCCCeEEECCCCCeehHHHHHHHHH-Hcc--Ccccccccccee-ccHHHHHHH
Confidence 0000000 00010000000 00111222 488999998865532 244 455567888653 223334455
Q ss_pred hhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhh-ccChhhHHHHhhccC---CCCCCCCCHHHH
Q 008191 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTH---YRSPINYSVVQL 382 (574)
Q Consensus 316 ~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~---~~~~~~fs~~~l 382 (574)
.+++.+ .+.||.|...+..+|+|||||.|. .+++++.+ .|.|++||-|++.-. ....--|+.+.+
T Consensus 221 ~~Lg~~-~p~~~h~~l~~~~~g~KLSKr~~~-~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~ 289 (305)
T d1j09a2 221 RAFGWE-APRFYHMPLLRNPDKTKISKRKSH-TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEF 289 (305)
T ss_dssp HHHTCC-CCEEEEECCCBCTTSCBCCTTTSC-CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHH
T ss_pred HhhcCC-CCceeeecccccCccccccccCCc-cCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHH
Confidence 566554 456776655566799999999987 68988886 599999998888642 233344676654
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.2e-12 Score=130.46 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=73.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- ..| .++.=+||.|.+ . ....|.+.+.++|+.||+..+
T Consensus 8 APsPtG~lHiG~~rtal~n~~~Ak~--~~G---~~iLRieDtD~~--------R-----~~~~~~~~I~~dL~wlgl~~d 69 (286)
T d1nzja_ 8 APSPSGELHFGSLIAALGSYLQARA--RQG---RWLVRIEDIDPP--------R-----EVPGAAETILRQLEHYGLHWD 69 (286)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHH--TTC---EEEEEECCSCGG--------G-----SCTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--hCC---EEEEEeCCCCCC--------c-----CCHHHHHHHHHHHHHhhhccc
Confidence 5999999999999999998888884 234 677788998853 1 112588999999999999744
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeee
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRV 211 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~ 211 (574)
.-..+.|++.+...+++++|+++|.+|.-
T Consensus 70 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 70 GDVLWQSQRHDAYREALAWLHEQGLSYYC 98 (286)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCcccc
Confidence 34567789999999999999999999953
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=7.5e-10 Score=112.06 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|- +.=.|+.=|+|.|. ......|.+.+.++|+.|||...
T Consensus 25 APSPTG~LHiG~~rtal~n~l~Ak~-----~~G~fiLRIEDtD~-------------~R~~~~~~~~I~~dL~WLGl~wD 86 (331)
T d1gtra2 25 PPEPNGYLHIGHAKSICLNFGIAQD-----YKGQCNLRFDDTNP-------------VKEDIEYVESIKNDVEWLGFHWS 86 (331)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CcccchHHHHHHHHHHHHhcccc
Confidence 4899999999999999999999887 44567777888873 22334778999999999999743
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceee
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYR 210 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~ 210 (574)
.-..+.|++.+.-++++++|+++|++|.
T Consensus 87 ~~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 87 GNVRYSSDYFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp SSCEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred ccceecchHHHHHHHHHHhhhhcCCccc
Confidence 3444678999999999999999999994
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.5e-07 Score=75.81 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHH
Q 008191 425 KFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496 (574)
Q Consensus 425 ~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~ 496 (574)
++.+.|.+||+||||||.|+++|+++++.+|++..... .....+...++.+..+|||+...+++
T Consensus 22 ~~~~~F~~Am~DDlNTp~Ala~lfel~k~~N~~~~~~~--------~~~~~~~~~l~~~~~vLGll~~~p~~ 85 (87)
T d1li5a1 22 AFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDM--------AAANAMASHLRKLSAVLGLLEQEPEA 85 (87)
T ss_dssp HHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHHTTTTCSCSCHHH
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhHcCCCCCCHHH
Confidence 56788999999999999999999999999999875432 11234456678889999998766543
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.49 E-value=1.5e-07 Score=88.50 Aligned_cols=112 Identities=7% Similarity=0.025 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhh
Q 008191 387 ERIFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR 461 (574)
Q Consensus 387 ~~l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~ 461 (574)
|.+|||.+++..+ +.++.++ +..++.+.+++..+..+.+.+.++| ++++++.|++.++++++.+|+|++..
T Consensus 2 N~lGNl~~Rv~~~---i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N~yi~~~ 77 (210)
T d1rqga1 2 NNLGNFVHRALTF---VNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFDHK 77 (210)
T ss_dssp TTHHHHHHHHHHH---HHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHH---HHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777655332 2222211 1122345778899999999999999 99999999999999999999999998
Q ss_pred hcch-----hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 462 KGKK-----QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 462 ~~~~-----~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++|. .+....++..+...++.+..+| ||+|+.+++++.+|+
T Consensus 78 ~PW~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg 124 (210)
T d1rqga1 78 QPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 124 (210)
T ss_dssp CHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 8763 2234455667777777777777 999999999999885
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=2.3e-07 Score=82.70 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh-----hhhHHHHHHHHHHHHHHHhhh-ccc
Q 008191 417 PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ-----AMRLESLAALEKTIRNVLTVL-GLM 490 (574)
Q Consensus 417 ~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~l~iL-Gi~ 490 (574)
.+.+..+.++.+.+.++| +++++++|+..++++++.+|+|++..++|.. +....++..+++.++.+..+| +||
T Consensus 30 ~~~~~~~~~~~~~~~~~~-e~~~~~~al~~i~~~~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~m 108 (152)
T d2d5ba1 30 GEELAEGTGLAGRLRPLV-RELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAM 108 (152)
T ss_dssp CGGGGGGGGHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 344556677889999999 9999999999999999999999999887631 222344666667777666666 899
Q ss_pred cccHHHHHHHHH
Q 008191 491 STGYSEVLLQLR 502 (574)
Q Consensus 491 p~~~~~i~~~l~ 502 (574)
|..+++++++|+
T Consensus 109 P~~~~ki~~~Lg 120 (152)
T d2d5ba1 109 PDKMAELRRALG 120 (152)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHHHcC
Confidence 999999998874
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=5.4e-07 Score=81.10 Aligned_cols=88 Identities=7% Similarity=-0.052 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh------hhh-HHHHHHHHHHHHHHHhh
Q 008191 414 SIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ------AMR-LESLAALEKTIRNVLTV 486 (574)
Q Consensus 414 ~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~------~~~-~~~l~~~~~~l~~~l~i 486 (574)
..+.++.+.+....+.+.++| +++++++|+..++++++.+|+|++..++|.. ..+ ..++..++..++.+..+
T Consensus 24 ~~d~~l~~~~~~~~~~~~~~~-~~~~~~~al~~i~~~~~~~Nkyi~~~~PWkl~k~~~~~~~~~~vl~~~~~~lr~~~~l 102 (162)
T d1pfva1 24 LADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTY 102 (162)
T ss_dssp CSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999 9999999999999999999999999987631 122 34566677777777777
Q ss_pred h-ccccccHHHHHHHHH
Q 008191 487 L-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 487 L-Gi~p~~~~~i~~~l~ 502 (574)
| +|||..+++++.+|+
T Consensus 103 L~P~mP~~s~ki~~~L~ 119 (162)
T d1pfva1 103 LKPVLPKLTERAEAFLN 119 (162)
T ss_dssp TTTTCHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHhC
Confidence 6 899999999998875
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=3.6e-06 Score=79.28 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhhh-hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcchhh
Q 008191 391 YIYQTLHDCEKALSLLDAA-ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKKQA 467 (574)
Q Consensus 391 ~l~~~l~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~~~ 467 (574)
++||+.+.+......+... ......|+|++.+++++...+.++| ++|+++.|++.|++|+ ..++.|++..+.....
T Consensus 3 KlwNa~rF~~~~~~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~-~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k~~~~~ 81 (218)
T d1ivsa2 3 KLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELVWSEFCDWYLEAAKPALKA 81 (218)
T ss_dssp HHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHhhhhhHHHHHHHHhhhccc
Confidence 6778777654443332111 1122336899999999999999999 9999999999999997 3567787766532111
Q ss_pred hhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 468 MRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 468 ~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
........+..++..++.+| ||+|+.+|++|+.+..
T Consensus 82 ~~~~~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~ 118 (218)
T d1ivsa2 82 GNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 118 (218)
T ss_dssp TBHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12233345556777778777 8999999999998853
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=8.3e-06 Score=69.87 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccc
Q 008191 414 SIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMST 492 (574)
Q Consensus 414 ~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~ 492 (574)
..+++++..++++...+.++| +.|+++.|++.+++|++.++++....... .+ +...+..++.+| ||+|+
T Consensus 30 ~~dk~~~~~l~~~i~~v~~~~-e~~~fn~ai~~l~~f~n~l~~~~~~~~~~------~~---~~~~l~~ll~ll~P~~P~ 99 (128)
T d1h3na1 30 GKDRELYGKLHETLKKVTEDL-EALRFNTAIAALMEFLNALYEYRKDRPVT------PV---YRTAIRYYLQMLFPFAPH 99 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCSC------HH---HHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHhhcccchhhhhhhhH------HH---HHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999 89999999999999998888776543211 12 234556667777 89999
Q ss_pred cHHHHHHHHH
Q 008191 493 GYSEVLLQLR 502 (574)
Q Consensus 493 ~~~~i~~~l~ 502 (574)
.++++|+.++
T Consensus 100 itEeiw~~l~ 109 (128)
T d1h3na1 100 LAEELWHWFW 109 (128)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=2.2e-05 Score=67.25 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhc--
Q 008191 391 YIYQTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKG-- 463 (574)
Q Consensus 391 ~l~~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~-- 463 (574)
+++++..|+.+.+++....+ ..++.+..++..+.++++.+.++. +++.++..+.++++|++.+|+|++..+.
T Consensus 6 YiqYa~AR~~SIl~k~~~~~~~~~~~~~~~E~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~yl~~La~~F~~fY~~~~~~~ 84 (126)
T d1iq0a1 6 YVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYNARENGQ 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHCEETTE
T ss_pred HHHHHHHHHHHHHHhccccCCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45667777777776643211 112234567788889999999999 9999999999999999999999976441
Q ss_pred ----------chhhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 464 ----------KKQAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 464 ----------~~~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
.....|+.++.++..+|...+.+|||.|.
T Consensus 85 ~~~~i~~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~~~ 123 (126)
T d1iq0a1 85 PATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 123 (126)
T ss_dssp ESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 11246788899999999999999999874
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=1.4e-05 Score=72.67 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhh--hhhh-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHH
Q 008191 389 IFYIYQTLHDCEKALSL--LDAA-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLH 459 (574)
Q Consensus 389 l~~l~~~l~~~~~~l~~--~~~~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~ 459 (574)
+.+|||+.+.+..+.+. .... ......|++++.+++++.+.+.++| ++|++++|+..+.+++. .++.|++
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~-~~~~f~~a~~~l~~f~~~~l~~~Y~e 80 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARALRDFVVEDLSQWYVR 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSSTTTHH
T ss_pred CcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHhHhhhhHHHHH
Confidence 45788887766543321 1100 1112246889999999999999999 99999999999999864 3455665
Q ss_pred hhhc-----chhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 460 TRKG-----KKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 460 ~~~~-----~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
-.+. ...+.+......+..++..++.+| ||+|+.+|++|+.+.
T Consensus 81 ~~K~~l~~~~~~~~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~ 129 (180)
T d1ilea1 81 RNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLV 129 (180)
T ss_dssp HHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHT
T ss_pred hccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5441 112234444455667788888888 999999999999874
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.87 E-value=6.2e-06 Score=80.30 Aligned_cols=112 Identities=11% Similarity=0.099 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhh
Q 008191 390 FYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTR 461 (574)
Q Consensus 390 ~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~ 461 (574)
++|+|+++.+...+.++... ......|+|++..++++.+.+.++| ++|++++|+..|++|+. ..+.|++..
T Consensus 2 RKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y-~~y~f~~~~~~l~~F~~~~ls~~Y~~~~ 80 (273)
T d1ffya1 2 RKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQEVQNFINVELSNFYLDYG 80 (273)
T ss_dssp HHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred chHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHhhhhccchHHHHhhc
Confidence 46788887776666554211 1233467899999999999999999 99999999999999985 457788877
Q ss_pred hc------chhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 462 KG------KKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 462 ~~------~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+. .....|.+....+..++..++.+| ||+|+.+|++|+.+.
T Consensus 81 Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~ 128 (273)
T d1ffya1 81 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP 128 (273)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTST
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 62 122345555556667788888887 899999999998763
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=2.5e-05 Score=66.67 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHHHhhhccc
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNVLTVLGLM 490 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~iLGi~ 490 (574)
+..++..+.++++.+.++. +++.++..+.++++|++.+|+|++..+.. ....|+.++..+..+|...+.+|||.
T Consensus 41 e~~Li~~l~~~p~vl~~a~-~~~~Ph~l~~yl~~La~~F~~fY~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI~ 119 (124)
T d1f7ua1 41 AKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLT 119 (124)
T ss_dssp HHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3457788889999999999 99999999999999999999999987732 12458888999999999999999997
Q ss_pred cc
Q 008191 491 ST 492 (574)
Q Consensus 491 p~ 492 (574)
|.
T Consensus 120 ~~ 121 (124)
T d1f7ua1 120 PV 121 (124)
T ss_dssp CC
T ss_pred cc
Confidence 63
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.75 E-value=5.7e-05 Score=74.55 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=46.3
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.++| ||-.|.|.+||||.- ....+.++++ .|++|++..+ |.-..+ ......+-.+++......++
T Consensus 27 ~~~~~y-~G~~PTG~lHlGh~v---~~~~~~~lq~-~g~~~~~~Ia--D~~a~~------~~~~~~~~~~~~~~~~~~~~ 93 (306)
T d1j1ua_ 27 DEKSAY-IGFEPSGKIHLGHYL---QIKKMIDLQN-AGFDIIILLA--DLHAYL------NQKGELDEIRKIGDYNKKVF 93 (306)
T ss_dssp SSEEEE-EEECCCSSCBHHHHH---HHHHHHHHHH-TTEEEEEEEC--HHHHHH------TTCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEE-EeECCCCcchHHHHH---HHHHHHHHHH-CCCcEEEEec--cHHHHh------hhccchhhhhhhhhHHHHHH
Confidence 445666 688888999999964 3344555544 5999988665 111111 11123445556667778888
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
.++|+.
T Consensus 94 ~a~G~~ 99 (306)
T d1j1ua_ 94 EAMGLK 99 (306)
T ss_dssp HHTTCC
T ss_pred Hhhhcc
Confidence 999995
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=6.1e-05 Score=75.52 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=48.7
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCC-cccccccCceeehhhhhhccChhhH
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDS-EKMSKSLGNFFTIRQVMELYHPLAL 362 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G-~KMSKS~Gn~i~~~d~l~~~~~d~l 362 (574)
|+..++-...|+.++|.|+. +|.+.-.-...-.+...+. . +|+-++. ++| +|||||.||.|++.| +|+.+
T Consensus 175 QaaDi~~l~~~~vp~G~DQ~-~~i~l~Rdla~r~~~~~~~-~-~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i 246 (343)
T d1h3fa1 175 QAYDSVAIRADVEMGGTDQR-FNLLVGREVQRAYGQSPQV-C-FLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAM 246 (343)
T ss_dssp HHHHHHHHTCSEEEEEGGGH-HHHHHHHHHHHHTTCCCCE-E-EEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHH
T ss_pred HhhhhhhhcccccccccchH-HHHHHHHHHHhhcCccccc-e-eeccccccccccchhhcccccceeeec-----hhHHH
Confidence 33344433568899999985 6655433333333344332 3 4445544 588 599999999999876 67777
Q ss_pred HHHhhcc
Q 008191 363 RLFLIGT 369 (574)
Q Consensus 363 R~~ll~~ 369 (574)
+=.+++.
T Consensus 247 ~~Ki~~~ 253 (343)
T d1h3fa1 247 FKKLMRV 253 (343)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 6666653
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.54 E-value=2.7e-05 Score=77.20 Aligned_cols=48 Identities=25% Similarity=0.422 Sum_probs=34.6
Q ss_pred CceeEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC--CccccHH
Q 008191 95 GKVGMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN--FTDVDDK 147 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~--~dD~g~k 147 (574)
++.++| ||--|.++ +||||+-+++ .-|++...|+.|..+.| ++.+||+
T Consensus 30 ~~~~~Y-~G~DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~iGDP 80 (323)
T d1jila_ 30 EQVTLY-CGADPTADSLHIGHLLPFL----TLRRFQEHGHRPIVLIGGGTGMIGDP 80 (323)
T ss_dssp SCCEEE-EEECCSSSSCBHHHHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCC
T ss_pred CCcEEE-EcccCCCccccHHHHHHHH----HHHHHHHhCCceEEeehhhhhhccCC
Confidence 344555 46667766 9999988775 45778889999988876 4555664
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00045 Score=68.83 Aligned_cols=77 Identities=16% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccc-cCceeehhhhhhccChhh
Q 008191 284 AMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKS-LGNFFTIRQVMELYHPLA 361 (574)
Q Consensus 284 am~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS-~Gn~i~~~d~l~~~~~d~ 361 (574)
-++...+-...|+.++|.|+. +|.+.-.-...-.+..++. . +|+-++. ++|.||||| .||.|.+.|= ++.
T Consensus 166 lQaaDil~~~ad~v~~G~DQ~-~~i~l~rd~a~r~~~~~~~-~-l~~pll~~l~g~kmsks~~~~~I~l~D~-----~~~ 237 (339)
T d1n3la_ 166 LQALDEEYLKVDAQFGGIDQR-KIFTFAEKYLPALGYSKRV-H-LMNPMVPGLTGSKMSSSEEESKIDLLDR-----KED 237 (339)
T ss_dssp HHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGGTCCCCE-E-EEECCCCCSSCC-------CCSCBTTCC-----HHH
T ss_pred HHHHHHHhccCCccccchhHH-HHHHHHHHHHhhhccCcce-e-eeeccccccccccccccchhhcccccCC-----HHH
Confidence 344455556789999999987 4554333222223333333 3 4445544 589999987 5898887653 445
Q ss_pred HHHHhhc
Q 008191 362 LRLFLIG 368 (574)
Q Consensus 362 lR~~ll~ 368 (574)
++-=+.+
T Consensus 238 I~kKI~~ 244 (339)
T d1n3la_ 238 VKKKLKK 244 (339)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 5544433
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.22 E-value=0.015 Score=56.94 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=43.5
Q ss_pred EcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 101 VCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 101 ~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
.+|--|.|.+||||.-. ++..+..+ .|+++++. =.|.|. .-...++.++. ++..++..++-++|+
T Consensus 5 ~tG~~PSG~~HlG~~~g-----~i~~~~~lq~~~~~~i~-iAD~ha-------lt~~~~~~~l~-~~~~~~~~~~lA~G~ 70 (326)
T d1i6la_ 5 FSGIQPSGVITIGNYIG-----ALRQFVELQHEYNCYFC-IVDQHA-------ITVWQDPHELR-QNIRRLAALYLAVGI 70 (326)
T ss_dssp EEEECCCSCCBHHHHHH-----THHHHHHHTTTSEEEEE-ECHHHH-------TTSCCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred EeCcCCCCccHHHHHHH-----HHHHHHHHhCCCCEEEE-eehHHh-------hccCCCHHHHH-HHHHHHHHHhhhhhc
Confidence 46888899999999533 24455444 58887543 334442 11234565554 466778889999999
Q ss_pred CC
Q 008191 180 LP 181 (574)
Q Consensus 180 ~~ 181 (574)
.+
T Consensus 71 dp 72 (326)
T d1i6la_ 71 DP 72 (326)
T ss_dssp CT
T ss_pred cc
Confidence 74
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0026 Score=64.16 Aligned_cols=76 Identities=13% Similarity=0.004 Sum_probs=47.5
Q ss_pred CCceeEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
.|+.-...+|--|.|. +||||.-+++ .++.++...|++|.+.. .|++ ++. ....+++++ .++..++.+
T Consensus 71 ~gkp~~vytG~~PSg~~lHlGh~v~~~---~~~~~q~~~~~~v~i~i-aD~~--a~~----~~~~~~~e~-~~~~~e~~~ 139 (386)
T d1r6ta2 71 NKKPFYLYTGRGPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQM-TDDE--KYL----WKDLTLDQA-YGDAVENAK 139 (386)
T ss_dssp TTCCEEEEEEECCCTTCCBGGGHHHHH---HHHHHHHHHTCCEEEEE-CHHH--HHH----HSSCCHHHH-HHHHHHHHH
T ss_pred cCCCeEEEeccCCCCchhHHHHHHHHH---HHHHHHHhcccceEEEe-cchH--hhh----cccCCHHHH-HHHHHHHHH
Confidence 3444455677778896 7999976654 34333445688887653 3332 111 124566554 567778888
Q ss_pred HHHhcCCC
Q 008191 173 DMVDLHCL 180 (574)
Q Consensus 173 ~l~~L~I~ 180 (574)
++-++|+.
T Consensus 140 ~~lA~GlD 147 (386)
T d1r6ta2 140 DIIACGFD 147 (386)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 89999996
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=85.20 E-value=0.18 Score=48.77 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=47.2
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcc--ccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTD--VDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD--~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
+++++|+ |--|. +.+||||+-+++ .-|++...|+.|..+.|-.. +||+--+.. +......+-.+.+.+.+.
T Consensus 29 ~~~~~Y~-G~DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~-eR~~l~~e~i~~n~~~~~ 102 (319)
T d2ts1a_ 29 ERVTLYC-GFDPTADSLHIGHLATIL----TMRRFQQAGHRPIALVGGATGLIGDPSGKKS-ERTLNAKETVEAWSARIK 102 (319)
T ss_dssp SCCEEEE-EECCSSSSCBGGGHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSS-CCCCCCHHHHHHHHHHHH
T ss_pred CCceEEE-eecCCCCcchHHHHHHHH----HHHHHHHcCCceeEEeeehhhccCCCcccch-hhhcCCHHHHHHHHHHHH
Confidence 4556664 44444 559999998876 56778888999998887433 455422211 122333555556666666
Q ss_pred HHHHhc
Q 008191 172 QDMVDL 177 (574)
Q Consensus 172 ~~l~~L 177 (574)
+.+..+
T Consensus 103 ~q~~~~ 108 (319)
T d2ts1a_ 103 EQLGRF 108 (319)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 666553
|