Citrus Sinensis ID: 010158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEEEcccccccccccccccEccccccEcccEEEccccccccEEEEEEcccccccccccccccHHHHHcccEEEEccHHHcccccccccccHHcccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHEcccEccccccHcccccccccEEcccccccHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEEEEEEEEEEcccHHHHHHHHHHHc
meatllsshhftpqlftttpvklggghvladnrfchplctkTFVSVRLSLLdskrrqvpllnrpflsrankrysvyssdqlrsDYVNVEASSALsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIgyfiplpgfdrrlipqdylsFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDtisesgfgqgsSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFklasaaredspitevepyipfninpsgmqpvlttTYLLAFPSILASILGSPFWQHVKEIlnpetsvgarpwvYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
meatllsshhftpqlfTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLslldskrrqvpllnrpflsrankrysvyssdqlrSDYVNVEASSAlsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLasaaredspitEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
*********HFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYS******DYVNV****************************************MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIV*
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRL****************FLSRANKRYSV****************************************************************LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL**********TEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
*EATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPR*****DSQG*****DNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
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MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVEHFVIIVFPFSCFLLFHLAIVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
F4IQV7575 Preprotein translocase su yes no 0.846 0.76 0.685 1e-179
P0A4H1439 Protein translocase subun yes no 0.604 0.710 0.307 4e-32
P0A4H0439 Protein translocase subun yes no 0.604 0.710 0.307 4e-32
O66491429 Protein translocase subun yes no 0.583 0.701 0.305 1e-28
P46249410 Protein translocase subun N/A no 0.498 0.626 0.311 5e-28
Q1XDJ1411 Protein translocase subun N/A no 0.562 0.705 0.271 6e-27
Q8CNF3430 Protein translocase subun yes no 0.587 0.704 0.299 2e-26
Q5HM19430 Protein translocase subun yes no 0.587 0.704 0.299 2e-26
P43804441 Protein translocase subun yes no 0.591 0.691 0.268 3e-25
P28527420 Protein translocase subun yes no 0.527 0.647 0.273 4e-25
>sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  627 bits (1618), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 303/442 (68%), Positives = 369/442 (83%), Gaps = 5/442 (1%)

Query: 38  LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
           LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct: 33  LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query: 95  SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
           ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct: 93  ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
           EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct: 151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query: 215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
           LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct: 211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query: 275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
           L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct: 271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query: 335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDS 394
           L+KML+Q+ GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLASA+RE S
Sbjct: 331 LHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLASASREGS 390

Query: 395 PITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 454
           PITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE++VGA P
Sbjct: 391 PITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPESTVGAPP 450

Query: 455 WVYYTIYAFFVFLFNIFDIVSI 476
           WVYY+IYAFFVFLFNIFDI ++
Sbjct: 451 WVYYSIYAFFVFLFNIFDIANL 472
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|O66491|SECY_AQUAE Protein translocase subunit SecY OS=Aquifex aeolicus (strain VF5) GN=secY PE=1 SV=1 Back     alignment and function description
>sp|P46249|SECY_CYACA Protein translocase subunit SecY OS=Cyanidium caldarium GN=secY PE=2 SV=2 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q8CNF3|SECY_STAES Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 12228) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q5HM19|SECY_STAEQ Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P43804|SECY_HAEIN Protein translocase subunit SecY OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P28527|SECY_GUITH Protein translocase subunit SecY OS=Guillardia theta GN=secY PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
296086738613 unnamed protein product [Vitis vinifera] 0.922 0.776 0.756 0.0
225437006 668 PREDICTED: preprotein translocase subuni 0.897 0.693 0.749 0.0
147784859 1622 hypothetical protein VITISV_011897 [Viti 0.866 0.275 0.76 0.0
255559472538 protein translocase secy subunit, putati 0.777 0.745 0.812 0.0
224066513552 SecY protein [Populus trichocarpa] gi|22 0.866 0.809 0.732 0.0
449444663494 PREDICTED: preprotein translocase subuni 0.757 0.791 0.780 0.0
449489752463 PREDICTED: preprotein translocase subuni 0.757 0.844 0.782 0.0
240254559575 secY protein transport-like protein [Ara 0.846 0.76 0.685 1e-177
356503539546 PREDICTED: preprotein translocase subuni 0.844 0.798 0.694 1e-177
297822899567 hypothetical protein ARALYDRAFT_320901 [ 0.837 0.761 0.634 1e-163
>gi|296086738|emb|CBI32373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/476 (75%), Positives = 406/476 (85%)

Query: 1   MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPL 60
           MEATLLSSHHF P+ F+  P K  GG V    + C P   +T VS++L   +S  R+  L
Sbjct: 35  MEATLLSSHHFNPRFFSPKPFKFPGGQVEHGLQLCCPFYARTNVSLKLISSESSARRFSL 94

Query: 61  LNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN 120
           L+RPFLSRANK+  V  S+QLRSDY+N EA+   SVN E  P R DD  D  G  +V ++
Sbjct: 95  LSRPFLSRANKKLCVNFSEQLRSDYLNAEATPLQSVNDELFPQRHDDGSDVFGPHNVNNS 154

Query: 121 ETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPG 180
           ET + + KM++NRFLNF RL SVLNNAAESFFKSEIRRRLFVTAVL+VISR+GYFIPLPG
Sbjct: 155 ETLQPRTKMFRNRFLNFARLGSVLNNAAESFFKSEIRRRLFVTAVLLVISRVGYFIPLPG 214

Query: 181 FDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQL 240
           FDRRL+P+DYLSFVSGSVDELGDF  ELKLS FQLGISPQI ASILMQVLCH+VPSLV+L
Sbjct: 215 FDRRLMPEDYLSFVSGSVDELGDFAGELKLSLFQLGISPQIAASILMQVLCHVVPSLVKL 274

Query: 241 RKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGA 300
           RKEGLDGHEKIKSYIWWISLGFAILEA+++ACYSL YS+YAASH VKHVMVT   LVCGA
Sbjct: 275 RKEGLDGHEKIKSYIWWISLGFAILEALVLACYSLTYSVYAASHRVKHVMVTTLFLVCGA 334

Query: 301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVF 360
           MTM+WICD ISESGFGQGSSLIICVGILTGYT+TLYKML QL G +V WWP++L +LGVF
Sbjct: 335 MTMTWICDKISESGFGQGSSLIICVGILTGYTDTLYKMLVQLSGGAVSWWPYILAVLGVF 394

Query: 361 TIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTY 420
           TIVTMWAVVVTEGCRK+KLQYYGFKLASA R+DSPITEVEPYIPFNINPSGMQPVLTT Y
Sbjct: 395 TIVTMWAVVVTEGCRKIKLQYYGFKLASATRDDSPITEVEPYIPFNINPSGMQPVLTTAY 454

Query: 421 LLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIVSI 476
           LLAFPSILAS+L SPFW+H+KEILNPETS+GA PWVYY+IYAFFVF+FNIFDI ++
Sbjct: 455 LLAFPSILASLLRSPFWEHIKEILNPETSIGAEPWVYYSIYAFFVFVFNIFDIANM 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437006|ref|XP_002272499.1| PREDICTED: preprotein translocase subunit secY-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784859|emb|CAN77495.1| hypothetical protein VITISV_011897 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559472|ref|XP_002520756.1| protein translocase secy subunit, putative [Ricinus communis] gi|223540141|gb|EEF41718.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066513|ref|XP_002302117.1| SecY protein [Populus trichocarpa] gi|222843843|gb|EEE81390.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444663|ref|XP_004140093.1| PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489752|ref|XP_004158405.1| PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240254559|ref|NP_180711.4| secY protein transport-like protein [Arabidopsis thaliana] gi|363805540|sp|F4IQV7.1|SCY2_ARATH RecName: Full=Preprotein translocase subunit SCY2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2289; Flags: Precursor gi|330253463|gb|AEC08557.1| secY protein transport-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503539|ref|XP_003520565.1| PREDICTED: preprotein translocase subunit secY-like [Glycine max] Back     alignment and taxonomy information
>gi|297822899|ref|XP_002879332.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] gi|297325171|gb|EFH55591.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2065868575 SCY2 "SECY HOMOLOG 2" [Arabido 0.846 0.76 0.685 5.7e-162
TIGR_CMR|DET_0494438 DET_0494 "preprotein transloca 0.608 0.716 0.291 7.4e-26
UNIPROTKB|P0AGA2443 secY [Escherichia coli K-12 (t 0.593 0.690 0.298 9.3e-26
TIGR_CMR|SO_0251446 SO_0251 "preprotein translocas 0.593 0.686 0.28 3.5e-25
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.525 0.608 0.290 4.5e-25
UNIPROTKB|P78283444 secY "Protein translocase subu 0.596 0.693 0.266 1.1e-23
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.596 0.693 0.266 1.1e-23
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.521 0.591 0.282 7e-23
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.598 0.699 0.253 4e-22
TAIR|locus:2054038551 SCY1 "AT2G18710" [Arabidopsis 0.596 0.558 0.287 8.5e-22
TAIR|locus:2065868 SCY2 "SECY HOMOLOG 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 303/442 (68%), Positives = 369/442 (83%)

Query:    38 LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
             LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct:    33 LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query:    95 SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
             ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct:    93 ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query:   155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
             EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct:   151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query:   215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
             LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct:   211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query:   275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
             L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct:   271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query:   335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDS 394
             L+KML+Q+ GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLASA+RE S
Sbjct:   331 LHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLASASREGS 390

Query:   395 PITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 454
             PITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE++VGA P
Sbjct:   391 PITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPESTVGAPP 450

Query:   455 WVYYTIYAFFVFLFNIFDIVSI 476
             WVYY+IYAFFVFLFNIFDI ++
Sbjct:   451 WVYYSIYAFFVFLFNIFDIANL 472
GO:0005886 "plasma membrane" evidence=ISM
GO:0009306 "protein secretion" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009526 "plastid envelope" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TIGR_CMR|DET_0494 DET_0494 "preprotein translocase, SecY subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P0AGA2 secY [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0251 SO_0251 "preprotein translocase, SecY subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TAIR|locus:2054038 SCY1 "AT2G18710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4IQV7SCY2_ARATHNo assigned EC number0.68550.84680.76yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
pfam00344340 pfam00344, SecY, SecY translocase 7e-51
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 1e-50
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 6e-43
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 6e-41
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-36
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 4e-19
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 7e-14
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 1e-11
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information 
 Score =  176 bits (449), Expect = 7e-51
 Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 14/266 (5%)

Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
           S F LGI P I ASI+MQ+L  + P L +L KEG +G +KI+ Y  +++L  A+++A+ +
Sbjct: 1   SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60

Query: 271 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
                 Y  ++    +     ++++    L  G M + W+ + I++ G G G SLII  G
Sbjct: 61  VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120

Query: 327 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFK 385
           I+      +  + S L  +        L LL + T+  +  VV + E  R++ +QY    
Sbjct: 121 IVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRV 180

Query: 386 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 445
           +     + S       Y+P  +N +G+ P++  + LLA P  +A  LGS F       L 
Sbjct: 181 VGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLA 233

Query: 446 PETSVGARPWVYYTIYAFFVFLFNIF 471
               +G+   VY   Y   +  F+ F
Sbjct: 234 YYLPIGS--PVYILFYIVLIIFFSYF 257

Length = 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 88.89
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-80  Score=657.03  Aligned_cols=356  Identities=26%  Similarity=0.418  Sum_probs=294.4

Q ss_pred             hhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcCchhH
Q 010158          142 SVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQ  220 (516)
Q Consensus       142 ~~~~~~~~~~-~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SLFaLGI~Py  220 (516)
                      ...|++.++. +.+++|||++||++++++||+|++||+||+|.++..+.+.+...+.++.+...||++++|+|+|||+||
T Consensus         4 ~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~Py   83 (436)
T COG0201           4 PLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPY   83 (436)
T ss_pred             hhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHH
Confidence            3457788887 479999999999999999999999999999998775433222111111121226789999999999999


Q ss_pred             HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccccchHHHHHHHHHHH
Q 010158          221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHSVKHVMVTAFLLV  297 (516)
Q Consensus       221 ItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~---~~~~~~~~~~~~~ivl~Lv  297 (516)
                      ||||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++. ...+.   ....+.+..++++++++|+
T Consensus        84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~-~~~~~~~~~~~~~~~~~~~~l~il~L~  162 (436)
T COG0201          84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVL-GGNNGGSPSDVGNGGIFFYLLIILQLT  162 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCcccccccchHHHHHHHHHHH
Confidence            9999999999878999999999999999999999999999999999999974 33321   1111223567889999999


Q ss_pred             HHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHHHhhheeccEE
Q 010158          298 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCR  375 (516)
Q Consensus       298 aGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~--~~~~~~il~~lli~ilii~~iV~v~~a~r  375 (516)
                      +|||++|||||+|||||||||+||+|++||++++|+.+.+.......+.  .++.. .++.++.++++++++||+|++||
T Consensus       163 ~Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~~r  241 (436)
T COG0201         163 AGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQARR  241 (436)
T ss_pred             HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhheEE
Confidence            9999999999999999999999999999999999999998775544432  12221 23455566777888999999999


Q ss_pred             EEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcCCc-------hHHHHHHHcCCCC
Q 010158          376 KVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNPET  448 (516)
Q Consensus       376 rIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~~~-------~~~~l~~~l~p~~  448 (516)
                      ||||||+|++.         +.++++|+|+|+|||||||+||||+++++|.+++++++++       |...+..++.|. 
T Consensus       242 ~IPI~y~~~~~---------~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~-  311 (436)
T COG0201         242 RIPIQYAKRQS---------YRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPG-  311 (436)
T ss_pred             Eeehhhhhhhh---------cCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCC-
Confidence            99999998431         2357899999999999999999999999999999998622       334566666654 


Q ss_pred             cCCCCCchhheeeehhhhh---------cChHHHHHHhh--c-cccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158          449 SVGARPWVYYTIYAFFVFL---------FNIFDIVSILY--T-LLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI  514 (516)
Q Consensus       449 sl~~~~~iy~lly~llIi~---------Fnp~diAe~Lk--g-~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~  514 (516)
                           .|+|+.+|++++++         +||+|+|||||  | +|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus       312 -----~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iail  385 (436)
T COG0201         312 -----SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAIL  385 (436)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 49999999999886         49999999999  4 9999999999999999999 9999999999999875

>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 1e-29
3din_C431 Crystal Structure Of The Protein-Translocation Comp 3e-23
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 5e-21
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 1e-15
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 2e-08
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 30/331 (9%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAEL-KL 210
            E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D   G  L +L
Sbjct: 12  KELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDIFSGGNLGRL 70
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAVI 269
           + F LG+ P I ASI+MQ+L   +PSL +L KE  D G  KI  Y  +++L  A ++++ 
Sbjct: 71  TVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLG 130
Query: 270 VACYSL----PYSIYAASH-SVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIIC 324
           +A +      P  I    +  +  +++T   LV G M + WI D I+E G G G+SLII 
Sbjct: 131 IAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIF 190
Query: 325 VGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYG 383
            GI+  +   + +   ++    +   P  L L+    I  +  +V V E  R++ +QY G
Sbjct: 191 AGIVANFPNAVIQFYEKVKTGDI--GPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPG 248
Query: 384 FKLAS---AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHV 440
            ++     A R+         Y+P  INP+G+ P++    LL  PS L + + +PF + +
Sbjct: 249 RQVGRQLYAGRKT--------YLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVI 300
Query: 441 KEILNPETSVGA--RPWVYYTIYAFFVFLFN 469
            ++  P    GA    ++Y T   FF + + 
Sbjct: 301 ADMFQP----GAIFYNFLYVTFIVFFTYFYT 327
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 7e-48
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 1e-47
3din_C431 Preprotein translocase subunit SECY; protein trans 5e-46
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 8e-46
1rh5_A436 Preprotein translocase SECY subunit; protein trans 2e-31
3mp7_A482 Preprotein translocase subunit SECY; protein trans 6e-31
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 6e-23
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
 Score =  170 bits (434), Expect = 7e-48
 Identities = 86/340 (25%), Positives = 138/340 (40%), Gaps = 31/340 (9%)

Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
            A  S  +  E+R+R+  T +++   R+G FIP PG D   I Q++L    G V  + + 
Sbjct: 3   KAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKI-QEFLRTAQGGVFGIINL 61

Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 261
              G   + S F LGI P I A+I+MQ+L  +VP+L +L KEG +G   I  Y     + 
Sbjct: 62  FSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIA 121

Query: 262 FAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 316
               +   +A          + +   S       V     V G   + W+ + I+E G G
Sbjct: 122 LGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIG 181

Query: 317 QGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 376
            G+SLII  GI+  +   + + +  +    V    F L  L    +       V +  R+
Sbjct: 182 NGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAF-LFFLAFIVLAFAGMAAVQQAERR 240

Query: 377 VKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL 432
           + +QY     G ++               YIP  +N +G+ P++    +L  P  LA+  
Sbjct: 241 IPVQYARKVVGGRVYGGQAT---------YIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 291

Query: 433 G-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF 471
             +P  Q +    NP             I    V LF   
Sbjct: 292 QDNPVLQGIANFFNPTR------PSGLFIEVLLVILFTYV 325
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=4.1e-84  Score=685.60  Aligned_cols=354  Identities=26%  Similarity=0.398  Sum_probs=295.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHH
Q 010158          148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVAS  224 (516)
Q Consensus       148 ~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~-f--ga~~~~SLFaLGI~PyItAS  224 (516)
                      +..++++|+|+|++||++++++||+|+|||+||+|.+++++. ++...++++++.+ |  ||++++|+|+|||+||||||
T Consensus         6 ~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS   84 (434)
T 2zjs_Y            6 WSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA   84 (434)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred             HhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence            346778999999999999999999999999999999876542 2222234553333 4  57899999999999999999


Q ss_pred             HHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccc-cccc--cchHHHHHHHHHHHHH
Q 010158          225 ILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-P-YSI-YAAS--HSVKHVMVTAFLLVCG  299 (516)
Q Consensus       225 IImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l-~-~~~-~~~~--~~~~~~~~ivl~LvaG  299 (516)
                      ||||||+.++|.++|++||||+||+|+|+||||+|+++|++||++++.... . ++. ...+  .+..+.++++++|++|
T Consensus        85 II~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aG  164 (434)
T 2zjs_Y           85 IIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAG  164 (434)
T ss_dssp             HHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999974321 1 121 1123  3455678899999999


Q ss_pred             HHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhheeccEEEEEE
Q 010158          300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKL  379 (516)
Q Consensus       300 s~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~~~~~~~~~~~~~~~il~~lli~ilii~~iV~v~~a~rrIPI  379 (516)
                      ++++|||||+|||||+|||+|++|++||++++|+++.+.++....+..++.. +++.+++++++++++||+|++||||||
T Consensus       165 t~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~vi~~vV~~~~~~rrIPv  243 (434)
T 2zjs_Y          165 IALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVA-FLFFLAFIVLAFAGMAAVQQAERRIPV  243 (434)
T ss_dssp             HHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHH-HHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH-HHHHHHHHHHHHHHHHHheeeEEEEee
Confidence            9999999999999999999999999999999999998888654443334443 244555667778889999999999999


Q ss_pred             eeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcC-CchHHHHHHHcCCCCcCCCCCchhh
Q 010158          380 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVYY  458 (516)
Q Consensus       380 qy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~-~~~~~~l~~~l~p~~sl~~~~~iy~  458 (516)
                      ||+++  +.|+   +.++++++|+|+|+|+|||||+||||+++++|+++++++. ++|.+++.++++|+      +|+|.
T Consensus       244 qyakr--~~gr---~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y~  312 (434)
T 2zjs_Y          244 QYARK--VVGG---RVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSGL  312 (434)
T ss_dssp             EECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHHH
T ss_pred             hhhhh--hccC---cccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHHH
Confidence            99974  3443   3566789999999999999999999999999999999774 44666788888876      38999


Q ss_pred             eeeehhhhh---------cChHHHHHHhh---ccccccccCCccHHhhhchh-hhhhhhHHHHHHHHHh
Q 010158          459 TIYAFFVFL---------FNIFDIVSILY---TLLFTITLGVNDSYFVEHFV-IIVFPFSCFLLFHLAI  514 (516)
Q Consensus       459 lly~llIi~---------Fnp~diAe~Lk---g~IpGiR~G~~T~kyL~k~i-rit~~ga~fl~l~~~~  514 (516)
                      ++|++++++         |||+|+|||||   ++|||+|||++|+|||+|++ |+|++||+|++++|.+
T Consensus       313 ~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~l  381 (434)
T 2zjs_Y          313 FIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLL  381 (434)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999998886         49999999999   49999999999999999999 9999999999998865
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 3e-36
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  137 bits (346), Expect = 3e-36
 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 32/346 (9%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 331
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 332 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 389
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 390 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETS 449
                 I       P         PV+    L A   +    L          + + E  
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPI---LGHYEGG 289

Query: 450 VGARPWVYYTIYAFFVFLFNIFDIVSILYTLLFTITLGVNDSYFVE 495
                  YY    + +       I +I+Y +   IT  +   ++VE
Sbjct: 290 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVE 335

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.7e-75  Score=615.65  Aligned_cols=347  Identities=14%  Similarity=0.128  Sum_probs=271.3

Q ss_pred             hhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcC
Q 010158          138 IRLS-SVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLG  216 (516)
Q Consensus       138 ~~~~-~~~~~~~~~~~~~~LrkRil~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~sg~l~~l~~fga~~~~SLFaLG  216 (516)
                      .+|. ..+||+++|.++.++|||++||++++++||+|++||+||+|.+..+ +        +.+++.++|.+++|+|+||
T Consensus         3 ~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~~-~--------~~~~~~~~a~~~~Sif~LG   73 (422)
T d1rh5a_           3 LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA-I--------FEFWQTITASRIGTLITLG   73 (422)
T ss_dssp             THHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS-C--------CTTHHHHHTCCTTBTTTTT
T ss_pred             ccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCccc-H--------HHHHHHHhccccccHHHhC
Confidence            3455 4459999999999999999999999999999999999999987642 2        2223334577899999999


Q ss_pred             chhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHH
Q 010158          217 ISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLL  296 (516)
Q Consensus       217 I~PyItASIImQLL~~~iP~L~kl~kege~gr~ki~~~tR~LtlvlAiiQA~~~~~~~l~~~~~~~~~~~~~~~~ivl~L  296 (516)
                      |+||||||||||||+.  |+++++++|+|+||+|+|++|||+|+++|++||++++. ...+.    ..+....++++++|
T Consensus        74 I~PyItASIImQLL~~--~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~-~~~~~----~~~~~~~~~iv~~L  146 (422)
T d1rh5a_          74 IGPIVTAGIIMQLLVG--SGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVG-AGAFG----ILTPLLAFLVIIQI  146 (422)
T ss_dssp             THHHHHHHHHHHHHHH--HTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSC----CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh--hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC----CCCchHHHHHHHHH
Confidence            9999999999999974  89999999999999999999999999999999999863 32221    23344667889999


Q ss_pred             HHHHHHHHHHHHHhhhcCCccchhHHHHHHHhhHHHHHHHHH-------HHHhhcCCcccHHHHHHHHHHHHHHHHHhhh
Q 010158          297 VCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKM-------LSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV  369 (516)
Q Consensus       297 vaGs~~lmWL~E~IT~~GIGNGiSLII~~gIis~lp~~l~~~-------~~~~~~~~~~~~~~il~~lli~ilii~~iV~  369 (516)
                      ++|+|++|||||+|||||+|||+||+|++||++++|++.++.       ......+. ..+.. +..++.+++++++++|
T Consensus       147 ~aGt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~l~~~i~i~~~vv~  224 (422)
T d1rh5a_         147 AFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGV-PNIEY-IAPIIGTIIVFLMVVY  224 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTC-CCGGG-THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhccc-chHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876532       11112221 22222 3344555666778999


Q ss_pred             eeccEEEEEEeeccccccccccCCCCCCCCCccccceecCCCCchHHHHHHHHHhHHHHHhhcC------------CchH
Q 010158          370 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG------------SPFW  437 (516)
Q Consensus       370 v~~a~rrIPIqy~~~~~~~g~~~~~~~~~~~sYiPiKLN~AGvMPIIFAssLl~~P~~I~~~l~------------~~~~  437 (516)
                      +|++|||||+||+++   +         +.++|+|+|+|+||+||+|||++++++|+++++++.            +.+.
T Consensus       225 ~~~~~~~IPv~~~~~---~---------~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~  292 (422)
T d1rh5a_         225 AECMRVEIPLAHGRI---K---------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV  292 (422)
T ss_dssp             HTTCEEEEECCCSSS---T---------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBS
T ss_pred             HHHhhhccccccccc---c---------ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchH
Confidence            999999999999862   2         256899999999999999999999999999988762            1123


Q ss_pred             HHHHHHcCCCCcCCC--CC----chhheeeehhhhh----------cChHHHHHHhh---ccccccccCCcc-HHhhhch
Q 010158          438 QHVKEILNPETSVGA--RP----WVYYTIYAFFVFL----------FNIFDIVSILY---TLLFTITLGVND-SYFVEHF  497 (516)
Q Consensus       438 ~~l~~~l~p~~sl~~--~~----~iy~lly~llIi~----------Fnp~diAe~Lk---g~IpGiR~G~~T-~kyL~k~  497 (516)
                      +++.++++|+.++..  .+    ++|.++|.+++++          |||+|+|||||   ++|||+|||++| ++||+|+
T Consensus       293 ~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~v  372 (422)
T d1rh5a_         293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRY  372 (422)
T ss_dssp             SSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHH
T ss_pred             HHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHH
Confidence            567788887665432  23    3555555554443          59999999999   499999999999 6679999


Q ss_pred             h-hhhhhhHHHHHHHHHh
Q 010158          498 V-IIVFPFSCFLLFHLAI  514 (516)
Q Consensus       498 i-rit~~ga~fl~l~~~~  514 (516)
                      + |+|++||+|++++|.+
T Consensus       373 i~rit~~Ga~~l~~ia~~  390 (422)
T d1rh5a_         373 IPPLTVMSSAFVGFLATI  390 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            9 9999999999999865