Citrus Sinensis ID: 013035

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
ccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEHHHHcHHHHHHHHHHHHccHHHHHHccc
ccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHccccccccEEEcEccccccEEcccccccHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIgyfiplpgfdrrlipqdylsFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDtisesgfgqgsSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFklasaaredspitevepyipfninpsgmqpvlttTYLLAFPSILASILGSPFWQHVKEIlnpetsvgarpwvYYTIYAFFVFLFNIFDIANLPKEIADYLNKMgaripnvkpgkaTIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
myknrflnfirlSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLasaaredspitEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRsyqaynvmpslskalrrygv
MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGlllsilatsstilDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
****RFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP***********
********FIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL**********TEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY**
MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
****RFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
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MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
F4IQV7575 Preprotein translocase su yes no 0.997 0.782 0.837 0.0
P0A4H1439 Protein translocase subun yes no 0.891 0.915 0.317 2e-45
P0A4H0439 Protein translocase subun yes no 0.891 0.915 0.317 2e-45
O66491429 Protein translocase subun yes no 0.891 0.937 0.314 1e-43
Q1XDJ1411 Protein translocase subun N/A no 0.847 0.929 0.295 9e-42
P51297411 Protein translocase subun N/A no 0.858 0.941 0.298 1e-39
Q05217430 Protein translocase subun yes no 0.889 0.932 0.287 4e-38
Q8CNF3430 Protein translocase subun yes no 0.884 0.927 0.290 7e-38
Q5HM19430 Protein translocase subun yes no 0.884 0.927 0.290 7e-38
Q7A086430 Protein translocase subun yes no 0.875 0.918 0.295 7e-37
>sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/450 (83%), Positives = 426/450 (94%)

Query: 2   YKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQD 61
           ++NRFL+F+R+SSVLN AAE FFKSEIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQD
Sbjct: 126 FRNRFLDFVRISSVLNTAAERFFKSEIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQD 185

Query: 62  YLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHE 121
           YLSFVSGSV+ELG+FGAE+KLS FQLG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHE
Sbjct: 186 YLSFVSGSVEELGEFGAEIKLSLFQLGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHE 245

Query: 122 KIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDT 181
           KIKSYIWW+S  FAI+EA++VA  SL YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDT
Sbjct: 246 KIKSYIWWLSFFFAIVEALVVAYTSLQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDT 305

Query: 182 ISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV 241
           ISESGFG GSSLIICVGILTGYTETL+KML+Q+ GS   W P++LGLLG+FT+VTM+AVV
Sbjct: 306 ISESGFGHGSSLIICVGILTGYTETLHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVV 365

Query: 242 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 301
           VTEGCRK+KLQYYGFKLASA+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILA
Sbjct: 366 VTEGCRKIKLQYYGFKLASASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILA 425

Query: 302 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGA 361
           SILGSPF  ++KEILNPE++VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGA
Sbjct: 426 SILGSPFLLNMKEILNPESTVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGA 485

Query: 362 RIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLI 421
           RIPN+KPGKATIEYLTKIQASTRFWGGLLLS LAT+ST+LDHYLR IN+GFSIGFTSVLI
Sbjct: 486 RIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLI 545

Query: 422 IVGSIIELRRSYQAYNVMPSLSKALRRYGV 451
           IVGSIIELRRSY AYNVMPSLSKAL+RYGV
Sbjct: 546 IVGSIIELRRSYHAYNVMPSLSKALKRYGV 575
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|O66491|SECY_AQUAE Protein translocase subunit SecY OS=Aquifex aeolicus (strain VF5) GN=secY PE=1 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q05217|SECY_STACT Protein translocase subunit SecY OS=Staphylococcus carnosus (strain TM300) GN=secY PE=3 SV=2 Back     alignment and function description
>sp|Q8CNF3|SECY_STAES Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 12228) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q5HM19|SECY_STAEQ Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q7A086|SECY_STAAW Protein translocase subunit SecY OS=Staphylococcus aureus (strain MW2) GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
147784859 1622 hypothetical protein VITISV_011897 [Viti 0.993 0.276 0.879 0.0
225437006 668 PREDICTED: preprotein translocase subuni 1.0 0.675 0.880 0.0
296086738 613 unnamed protein product [Vitis vinifera] 1.0 0.735 0.880 0.0
449444663494 PREDICTED: preprotein translocase subuni 0.997 0.910 0.866 0.0
255559472538 protein translocase secy subunit, putati 0.966 0.810 0.861 0.0
224066513 552 SecY protein [Populus trichocarpa] gi|22 0.957 0.782 0.858 0.0
240254559 575 secY protein transport-like protein [Ara 0.997 0.782 0.837 0.0
356503539546 PREDICTED: preprotein translocase subuni 0.960 0.793 0.829 0.0
297822899 567 hypothetical protein ARALYDRAFT_320901 [ 0.980 0.779 0.800 0.0
4582448 556 putative preprotein translocase SECY pro 0.995 0.807 0.8 0.0
>gi|147784859|emb|CAN77495.1| hypothetical protein VITISV_011897 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/448 (87%), Positives = 423/448 (94%)

Query: 1    MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQ 60
            M++NRFLNF RL SVLNNAAE+FFKSEIRRRLFVTAVL+VISR+GYFIPLPGFDRRL+P+
Sbjct: 953  MFRNRFLNFARLGSVLNNAAETFFKSEIRRRLFVTAVLLVISRVGYFIPLPGFDRRLMPE 1012

Query: 61   DYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGH 120
            DYLSFVSGSVDELGDF  ELKLS FQLGISPQI ASILMQVLCH+VPSLV+LRKEGLDGH
Sbjct: 1013 DYLSFVSGSVDELGDFAGELKLSLFQLGISPQIAASILMQVLCHVVPSLVKLRKEGLDGH 1072

Query: 121  EKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICD 180
            EKIKSYIWWISLGFAILEA+++ACYSL YS+YAASH VKHVMVT   LVCGAMTM+WICD
Sbjct: 1073 EKIKSYIWWISLGFAILEALVLACYSLTYSVYAASHRVKHVMVTTLFLVCGAMTMTWICD 1132

Query: 181  TISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAV 240
             ISESGFGQGSSLIICVGILTGYT+TLYKML QL G +V WWP++L +LGVFTIVTMWAV
Sbjct: 1133 KISESGFGQGSSLIICVGILTGYTDTLYKMLVQLSGGAVSWWPYILAVLGVFTIVTMWAV 1192

Query: 241  VVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSIL 300
            VVTEGCRK+KLQYYGFKLASA R+DSPITEVEPYIPFNINPSGMQPVLTT YLLAFPSIL
Sbjct: 1193 VVTEGCRKIKLQYYGFKLASATRDDSPITEVEPYIPFNINPSGMQPVLTTAYLLAFPSIL 1252

Query: 301  ASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMG 360
            AS+L SPFW+HVKEILNPETS+GA PWVYY+IYAFFVF+FNIFDIAN+PKEIADYLNKMG
Sbjct: 1253 ASLLRSPFWEHVKEILNPETSIGAEPWVYYSIYAFFVFVFNIFDIANMPKEIADYLNKMG 1312

Query: 361  ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 420
            ARIPN+KPGKATI YLTKIQASTRFWGGLLLS LAT STILDHYLRRIN+GFSIGFTSVL
Sbjct: 1313 ARIPNIKPGKATIAYLTKIQASTRFWGGLLLSFLATMSTILDHYLRRINQGFSIGFTSVL 1372

Query: 421  IIVGSIIELRRSYQAYNVMPSLSKALRR 448
            IIVGSIIELRRSYQAYNVMP LSKALRR
Sbjct: 1373 IIVGSIIELRRSYQAYNVMPDLSKALRR 1400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437006|ref|XP_002272499.1| PREDICTED: preprotein translocase subunit secY-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086738|emb|CBI32373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444663|ref|XP_004140093.1| PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255559472|ref|XP_002520756.1| protein translocase secy subunit, putative [Ricinus communis] gi|223540141|gb|EEF41718.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066513|ref|XP_002302117.1| SecY protein [Populus trichocarpa] gi|222843843|gb|EEE81390.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|240254559|ref|NP_180711.4| secY protein transport-like protein [Arabidopsis thaliana] gi|363805540|sp|F4IQV7.1|SCY2_ARATH RecName: Full=Preprotein translocase subunit SCY2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2289; Flags: Precursor gi|330253463|gb|AEC08557.1| secY protein transport-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503539|ref|XP_003520565.1| PREDICTED: preprotein translocase subunit secY-like [Glycine max] Back     alignment and taxonomy information
>gi|297822899|ref|XP_002879332.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] gi|297325171|gb|EFH55591.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4582448|gb|AAD24832.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2065868575 SCY2 "SECY HOMOLOG 2" [Arabido 0.997 0.782 0.815 2.8e-201
UNIPROTKB|P0AGA2443 secY [Escherichia coli K-12 (t 0.902 0.918 0.288 8e-37
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.898 0.910 0.276 7.2e-36
TIGR_CMR|SO_0251446 SO_0251 "preprotein translocas 0.904 0.914 0.273 2.4e-35
UNIPROTKB|P78283444 secY "Protein translocase subu 0.909 0.923 0.263 6.5e-35
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.909 0.923 0.263 6.5e-35
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.917 0.936 0.258 1.3e-34
TIGR_CMR|CHY_2289419 CHY_2289 "preprotein transloca 0.891 0.959 0.265 1.5e-33
TIGR_CMR|DET_0494438 DET_0494 "preprotein transloca 0.904 0.931 0.271 4.1e-33
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.882 0.874 0.261 6.7e-33
TAIR|locus:2065868 SCY2 "SECY HOMOLOG 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1948 (690.8 bits), Expect = 2.8e-201, P = 2.8e-201
 Identities = 367/450 (81%), Positives = 414/450 (92%)

Query:     2 YKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQD 61
             ++NRFL+F+R+SSVLN AAE FFKSEIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQD
Sbjct:   126 FRNRFLDFVRISSVLNTAAERFFKSEIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQD 185

Query:    62 YLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHE 121
             YLSFVSGSV+ELG+FGAE+KLS FQLG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHE
Sbjct:   186 YLSFVSGSVEELGEFGAEIKLSLFQLGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHE 245

Query:   122 KIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDT 181
             KIKSYIWW+S  FAI+EA++VA  SL YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDT
Sbjct:   246 KIKSYIWWLSFFFAIVEALVVAYTSLQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDT 305

Query:   182 ISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV 241
             ISESGFG GSSLIICVGILTGYTETL+KML+Q+ GS   W P++LGLLG+FT+VTM+AVV
Sbjct:   306 ISESGFGHGSSLIICVGILTGYTETLHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVV 365

Query:   242 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 301
             VTEGCRK+KLQYYGFKLASA+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILA
Sbjct:   366 VTEGCRKIKLQYYGFKLASASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILA 425

Query:   302 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGA 361
             SILGSPF  ++KEILNPE++VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGA
Sbjct:   426 SILGSPFLLNMKEILNPESTVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGA 485

Query:   362 RIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLI 421
             RIPN+KPGKATIEYLTKIQASTRFWGG             DHYLR IN+GFSIGFTSVLI
Sbjct:   486 RIPNIKPGKATIEYLTKIQASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLI 545

Query:   422 IVGSIIELRRSYQAYNVMPSLSKALRRYGV 451
             IVGSIIELRRSY AYNVMPSLSKAL+RYGV
Sbjct:   546 IVGSIIELRRSYHAYNVMPSLSKALKRYGV 575
GO:0005886 "plasma membrane" evidence=ISM
GO:0009306 "protein secretion" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009526 "plastid envelope" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
UNIPROTKB|P0AGA2 secY [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0251 SO_0251 "preprotein translocase, SecY subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2289 CHY_2289 "preprotein translocase, SecY subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0494 DET_0494 "preprotein translocase, SecY subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0A4H1SECY_SYNP6No assigned EC number0.31720.89130.9157yesno
P0A4H0SECY_SYNE7No assigned EC number0.31720.89130.9157yesno
F4IQV7SCY2_ARATHNo assigned EC number0.83770.99770.7826yesno
O66491SECY_AQUAENo assigned EC number0.31430.89130.9370yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023712001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (451 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
• ••  • 0.933
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
• ••  • 0.932
GSVIVG00015322001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)
•  •  • 0.914
GSVIVG00035271001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)
• ••  • 0.911
GSVIVG00003076001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)
• ••  • 0.903
rps3
SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)
•  •  • 0.899
GSVIVG00033342001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)
•  •  • 0.893
GSVIVG00035276001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence;; DNA-dependent RNA p [...] (310 aa)
•  •  • 0.887
GSVIVG00023753001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (159 aa)
•  •  • 0.882
GSVIVG00026031001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)
•  •  • 0.879

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
pfam00344340 pfam00344, SecY, SecY translocase 2e-70
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 1e-69
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 3e-61
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 1e-60
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 2e-53
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 5e-30
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 9e-23
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 6e-19
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information 
 Score =  226 bits (578), Expect = 2e-70
 Identities = 103/356 (28%), Positives = 170/356 (47%), Gaps = 23/356 (6%)

Query: 83  SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 142
           S F LGI P I ASI+MQ+L  + P L +L KEG +G +KI+ Y  +++L  A+++A+ +
Sbjct: 1   SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60

Query: 143 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 198
                 Y  ++    +     ++++    L  G M + W+ + I++ G G G SLII  G
Sbjct: 61  VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120

Query: 199 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFK 257
           I+      +  + S L  +        L LL + T+  +  VV + E  R++ +QY    
Sbjct: 121 IVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRV 180

Query: 258 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 317
           +     + S       Y+P  +N +G+ P++  + LLA P  +A  LGS F       L 
Sbjct: 181 VGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLA 233

Query: 318 PETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPGKATIEY 375
               +G+   VY   Y   +  F+ F   I   PK+IA+ L K G  IP ++PGK+T +Y
Sbjct: 234 YYLPIGS--PVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKY 291

Query: 376 LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 431
           L ++     F G + L ++A    +L             G TS+LI VG  ++   
Sbjct: 292 LNRVIPRLTFIGAIFLGLIAVLPDLLGAL-------GGFGGTSLLIAVGVALDTYE 340

Length = 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 95.2
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-95  Score=748.96  Aligned_cols=416  Identities=29%  Similarity=0.457  Sum_probs=347.2

Q ss_pred             HHhhhhhhccc-cchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcc--cccccchhhhcCc
Q 013035           13 SSVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGI   89 (451)
Q Consensus        13 ~~~~p~~~~~~-~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~slfsLGI   89 (451)
                      .+.+|++.++. +.++++||++||++++++||+|++||+||+|.++.++.+.+.....  .++.+  ||++++|+|+|||
T Consensus         3 ~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~--~~n~~~GGal~~~SIfaLGI   80 (436)
T COG0201           3 LPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLI--LFNMFSGGALSRGSIFALGI   80 (436)
T ss_pred             chhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhH--HHHHhcccccccchHHHHcc
Confidence            35678888987 5799999999999999999999999999999997654332211111  12223  4679999999999


Q ss_pred             hhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccccchhHHHHHHHH
Q 013035           90 SPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFL  167 (451)
Q Consensus        90 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~--~~~~~~~~~~~~~ivl~  167 (451)
                      +|||||||+||||+...|.++|++||+|+||||+|++|||+|+++|++||++++......+  ....+.+...+++++++
T Consensus        81 ~PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~  160 (436)
T COG0201          81 MPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQ  160 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHH
Confidence            9999999999999988999999999999999999999999999999999999975332111  11112335678899999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHHHHHHHhhcc
Q 013035          168 LVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEG  245 (451)
Q Consensus       168 LvaG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~iv~~~~~  245 (451)
                      |++||+++|||||+|||||+|||+|++|++||++++|+.+.+.......+.  .++.. .+..++..+++++.++|+|++
T Consensus       161 L~~Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~  239 (436)
T COG0201         161 LTAGTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQA  239 (436)
T ss_pred             HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhhe
Confidence            999999999999999999999999999999999999999988665444321  11111 122333444556678999999


Q ss_pred             eEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCCc-------hHHHHHHHcCC
Q 013035          246 CRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNP  318 (451)
Q Consensus       246 ~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~~-------~~~~~~~~l~~  318 (451)
                      +||||+||+|++         ..+++++|+|+|+||||+||+||||+++++|.+++++++++       |...+.+++++
T Consensus       240 ~r~IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~  310 (436)
T COG0201         240 RRRIPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSP  310 (436)
T ss_pred             EEEeehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccC
Confidence            999999999854         23568899999999999999999999999999999998622       34455666665


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHH
Q 013035          319 ETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILAT  396 (451)
Q Consensus       319 ~~~~~~~~~i~~~iy~~~i~~Fs~f~--~~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~  396 (451)
                      .      .|+|..+|++++++|||||  ++.||||+||||||+|.+|||+||||+|+|||+|+++|+|++||+|++++|+
T Consensus       311 ~------~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iai  384 (436)
T COG0201         311 G------SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAI  384 (436)
T ss_pred             C------cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4      4899999999999999999  4578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013035          397 SSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY  449 (451)
Q Consensus       397 ~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~  449 (451)
                      +|++++...+   .++.+||||+||+||+++|++||+++++.+++|+++.+..
T Consensus       385 lp~l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~~  434 (436)
T COG0201         385 LPELLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRIK  434 (436)
T ss_pred             HHHHHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhhc
Confidence            9999997632   3478899999999999999999999999999999985543

>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 2e-41
3din_C431 Crystal Structure Of The Protein-Translocation Comp 7e-32
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 7e-30
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 3e-24
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 4e-17
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 37/439 (8%)
Query: 26  SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAEL-KL 82
            E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D   G  L +L
Sbjct: 12  KELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDIFSGGNLGRL 70
Query: 83  SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAVI 141
           + F LG+ P I ASI+MQ+L   +PSL +L KE  D G  KI  Y  +++L  A ++++ 
Sbjct: 71  TVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLG 130
Query: 142 VACY----SLPYSIYAASH-SVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIIC 196
           +A +      P  I    +  +  +++T   LV G M + WI D I+E G G G+SLII 
Sbjct: 131 IAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIF 190
Query: 197 VGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYG 255
            GI+  +   + +   ++    +   P  L L+    I  +  +V V E  R++ +QY G
Sbjct: 191 AGIVANFPNAVIQFYEKVKTGDI--GPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPG 248
Query: 256 FKLAS---AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHV 312
            ++     A R+         Y+P  INP+G+ P++    LL  PS L + + +PF + +
Sbjct: 249 RQVGRQLYAGRKT--------YLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVI 300
Query: 313 KEILNPETSVGARPWVYYT-IYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPG 369
            ++  P    GA   ++Y  +Y  F+  F  F  A L  P E+A+ L+K GA IP V+PG
Sbjct: 301 ADMFQP----GA---IFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPG 353
Query: 370 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 429
           + T++YL +I     F+G                +    N  F  G T+ LI+VG  ++ 
Sbjct: 354 QDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTALIVVGVALDT 410
Query: 430 RRSYQAYNVMPSLSKALRR 448
            R  + Y +       +RR
Sbjct: 411 FRQIETYLIQKKYKSYVRR 429
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 1e-65
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 4e-65
3din_C431 Preprotein translocase subunit SECY; protein trans 1e-63
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 2e-63
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-43
3mp7_A482 Preprotein translocase subunit SECY; protein trans 4e-42
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-30
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 5e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  215 bits (551), Expect = 1e-65
 Identities = 129/439 (29%), Positives = 220/439 (50%), Gaps = 38/439 (8%)

Query: 18  NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 76
              ++ F+  E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D 
Sbjct: 3   EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61

Query: 77  ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 132
              G   +L+ F LG+ P I ASI+MQ+L   +PSL +L KE G  G  KI  Y  +++L
Sbjct: 62  FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121

Query: 133 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 187
             A ++++ +A +     S        +  +  +++T   LV G M + WI D I+E G 
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181

Query: 188 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 247
           G G+SLII  GI+  +   + +   ++    +     +L ++ +   + +  V V E  R
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPL-TLLLIIALIIAIIVGIVYVQEAER 240

Query: 248 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 303
           ++ +QY     G +L +  +          Y+P  INP+G+ P++    LL  PS L + 
Sbjct: 241 RIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIPSTLLNF 291

Query: 304 LGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 360
           + +PF + + ++  P          Y  +Y  F+  F  F  A   N P E+A+ L+K G
Sbjct: 292 VQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAENLHKAG 344

Query: 361 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 420
           A IP V+PG+ T++YL +I     F+G L LS++A    ++  +    N  F  G T+ L
Sbjct: 345 AFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTAL 401

Query: 421 IIVGSIIELRRSYQAYNVM 439
           I+VG  ++  R  + Y + 
Sbjct: 402 IVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=2.3e-99  Score=782.25  Aligned_cols=416  Identities=26%  Similarity=0.436  Sum_probs=339.9

Q ss_pred             hhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccc-hhhcc--cccccchhhhcCchhHHhH
Q 013035           19 AAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD-ELGDF--GAELKLSFFQLGISPQIVA   95 (451)
Q Consensus        19 ~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~slfsLGI~PyItA   95 (451)
                      .++.++++|+|+|++||++++++||+|+|||+||+|.++.++. .+..+++++ +++.+  ||++|+|+|+|||+|||||
T Consensus         5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItA   83 (434)
T 2zjs_Y            5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA   83 (434)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH
T ss_pred             HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHH
Confidence            3457889999999999999999999999999999999876542 222223455 34444  3789999999999999999


Q ss_pred             HHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-cc-cccc--cchhHHHHHHHHHHH
Q 013035           96 SILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-PY-SI-YAAS--HSVKHVMVTAFLLVC  170 (451)
Q Consensus        96 sIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~-~~-~~-~~~~--~~~~~~~~ivl~Lva  170 (451)
                      ||+||||+.++|.++|++||||+||||++++|||+|+++|++||++++.... .. +. ...+  ++..+.++++++|++
T Consensus        84 SII~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a  163 (434)
T 2zjs_Y           84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA  163 (434)
T ss_dssp             HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence            9999999989999999999999999999999999999999999999975321 11 21 1123  344567789999999


Q ss_pred             HHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhcceEEee
Q 013035          171 GAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK  250 (451)
Q Consensus       171 G~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~~~~~rrIP  250 (451)
                      |++++|||||+|||||+|||+|++|++||++++|+.+.+.++....++.++.. ++..+++.+++++.++++|+++||||
T Consensus       164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~vi~~vV~~~~~~rrIP  242 (434)
T 2zjs_Y          164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVA-FLFFLAFIVLAFAGMAAVQQAERRIP  242 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHH-HHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred             HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH-HHHHHHHHHHHHHHHHHheeeEEEEe
Confidence            99999999999999999999999999999999999998877654433223332 22334444555667899999999999


Q ss_pred             EeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhC-CchHHHHHHHcCCCCCCCCcchHH
Q 013035          251 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVY  329 (451)
Q Consensus       251 i~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~-~~~~~~~~~~l~~~~~~~~~~~i~  329 (451)
                      +||+|+..  +   ++.++++++|+|+|+|+||+||+|||||++++|+++++++. ++|.+++.++++|+      +|+|
T Consensus       243 vqyakr~~--g---r~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y  311 (434)
T 2zjs_Y          243 VQYARKVV--G---GRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSG  311 (434)
T ss_dssp             EEECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHH
T ss_pred             ehhhhhhc--c---CcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHH
Confidence            99997532  1   23456789999999999999999999999999999999664 44666677888875      4899


Q ss_pred             HHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHhhc
Q 013035          330 YTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRR  407 (451)
Q Consensus       330 ~~iy~~~i~~Fs~f~~--~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~~~~~~~~~  407 (451)
                      .++|++++++|||||.  +.||||+||||||+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++.. .+
T Consensus       312 ~~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~-~~  390 (434)
T 2zjs_Y          312 LFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNL-TG  390 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cC
Confidence            9999999999999994  57999999999999999999999999999999999999999999999999999998654 22


Q ss_pred             cCCccccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013035          408 INEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY  449 (451)
Q Consensus       408 ~~~~~~~~gtsllI~V~v~~~~~~qi~~~~~~~~y~~~~~~~  449 (451)
                      + .++.+||||+||+||+++|++||+|+++.+++|+++++|.
T Consensus       391 ~-~~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~  431 (434)
T 2zjs_Y          391 I-HSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG  431 (434)
T ss_dssp             C-CCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence            2 1577899999999999999999999999999999999874
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 451
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 7e-50
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  173 bits (439), Expect = 7e-50
 Identities = 68/430 (15%), Positives = 141/430 (32%), Gaps = 60/430 (13%)

Query: 25  KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 84
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 85  FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 144
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 145 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 203
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 204 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 261
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 262 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI------ 315
                 I       P         PV+    L A   +    L       +         
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV 292

Query: 316 ------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMG 360
                       L+   S      VY         +F IF +      PK +A  +  +G
Sbjct: 293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLG 352

Query: 361 ARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 419
             I   +  +  IE+ L +            +  LAT +  +         G   G T V
Sbjct: 353 MAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGGTGV 403

Query: 420 LIIVGSIIEL 429
           L+ V  +  +
Sbjct: 404 LLTVSIVYRM 413

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.7e-88  Score=701.40  Aligned_cols=389  Identities=16%  Similarity=0.188  Sum_probs=309.1

Q ss_pred             hhhHHhhhhhhccccchhhHHHHHHHHHHHHHHHhCccccCCCccCCcchhhhhhhccCccchhhcccccccchhhhcCc
Q 013035           10 IRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGI   89 (451)
Q Consensus        10 ~~~~~~~p~~~~~~~~~~l~~kil~Tl~il~iy~lG~~IPlPGi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slfsLGI   89 (451)
                      .+..+.+||+++|.+|.++|||++||++++++||+|+|||+||+|.++.+         .+.+++.++|.+++|+|+|||
T Consensus         4 ~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~~---------~~~~~~~~~a~~~~Sif~LGI   74 (422)
T d1rh5a_           4 IPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA---------IFEFWQTITASRIGTLITLGI   74 (422)
T ss_dssp             HHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS---------CCTTHHHHHTCCTTBTTTTTT
T ss_pred             cchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCccc---------HHHHHHHHhccccccHHHhCh
Confidence            34588999999999999999999999999999999999999999987642         344455556778999999999


Q ss_pred             hhHHhHHHHHHHHHhHhhhHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHH
Q 013035           90 SPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLV  169 (451)
Q Consensus        90 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~laiiqs~~~~~~~~~~~~~~~~~~~~~~~~ivl~Lv  169 (451)
                      +|||||||+||+|+.  |+++++|+|+|+||+|+|++|||+|+++|++||++++. ...+.    +.+....+.++++|+
T Consensus        75 ~PyItASIImQLL~~--~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~-~~~~~----~~~~~~~~~iv~~L~  147 (422)
T d1rh5a_          75 GPIVTAGIIMQLLVG--SGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVG-AGAFG----ILTPLLAFLVIIQIA  147 (422)
T ss_dssp             HHHHHHHHHHHHHHH--HTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSC----CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh--hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC----CCCchHHHHHHHHHH
Confidence            999999999999974  79999999999999999999999999999999999864 22221    233456678899999


Q ss_pred             HHHHHHHHHhhhhhccCCCcchHHHHHHHHhhHHHHHHHHH-------HHHhhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 013035          170 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKM-------LSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV  242 (451)
Q Consensus       170 aG~~il~wL~e~it~~GiGnG~SliI~~~I~~~lp~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~iv~~  242 (451)
                      +|++++|||||+|||||+|||+|++|++|||+++|++..+.       .+...++...+ .. +..++..++++..++++
T Consensus       148 aGt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~i~i~~~vv~~  225 (422)
T d1rh5a_         148 FGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNI-EY-IAPIIGTIIVFLMVVYA  225 (422)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCG-GG-THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchH-HH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876531       11111111111 11 12223333445668899


Q ss_pred             hcceEEeeEeeccccccccccCCCCCCCCCCccccccccCCcchHHHHHHHHHhHHHHHHHhCC------------chHH
Q 013035          243 TEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS------------PFWQ  310 (451)
Q Consensus       243 ~~~~rrIPi~~~~~~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiifassll~~p~~i~~~l~~------------~~~~  310 (451)
                      ++++||||++|+|++            +.++|+|+|+|+||+||+|||++++++|+++++++.+            .+..
T Consensus       226 ~~~~~~IPv~~~~~~------------~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~  293 (422)
T d1rh5a_         226 ECMRVEIPLAHGRIK------------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVD  293 (422)
T ss_dssp             TTCEEEEECCCSSST------------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSS
T ss_pred             HHhhhcccccccccc------------ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHH
Confidence            999999999998642            3579999999999999999999999999999987621            1234


Q ss_pred             HHHHHcCCCCCCCC--c----chHHHHHHHHHHHHHHHHHh--c-cChHHHHHHHHHcCCccccccCChhhHH-HHHHhh
Q 013035          311 HVKEILNPETSVGA--R----PWVYYTIYAFFVFLFNIFDI--A-NLPKEIADYLNKMGARIPNVKPGKATIE-YLTKIQ  380 (451)
Q Consensus       311 ~~~~~l~~~~~~~~--~----~~i~~~iy~~~i~~Fs~f~~--~-~~p~~iAe~Lkk~g~~IpGirpG~~T~~-yL~~~i  380 (451)
                      ++.+|++++.+...  .    .++|.++|++++++|++||.  + .||||+||||||||++|||+||||+|.+ ||+|++
T Consensus       294 ~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi  373 (422)
T d1rh5a_         294 GIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYI  373 (422)
T ss_dssp             STTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHH
T ss_pred             HHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHH
Confidence            66777777655432  1    14677778888899999994  4 6899999999999999999999999976 699999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 013035          381 ASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYN  437 (451)
Q Consensus       381 ~~~t~~Ga~~l~~la~~p~~~~~~~~~~~~~~~~~gtsllI~V~v~~~~~~qi~~~~  437 (451)
                      +|+|++||+|++++|++|++++..         +||||+||+||+++|++||+++++
T Consensus       374 ~rit~~Ga~~l~~ia~~p~~l~~~---------~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         374 PPLTVMSSAFVGFLATIANFIGAL---------GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCT---------TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988643         389999999999999999999875