Citrus Sinensis ID: 014218

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
ccccccccccccccccHHHcccHHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccEEcccccHHHHHHHHccccEEEEccEEEccccccccccccEEEcEEEEEccccccccccccHHccHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEEcccEEEEEEccccHHHHHHHcccccccEEEEcccHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccEEEEcccccccHHHHHHHHccccEEEEEEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEc
ccEEEEcccHHHHHHHHHHccccHHHEEEEcccccccHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccEEcccccccccccccHHHHHHHHHHHHHHHccccEEEccccccccEcccHcHHHHcccccccccccccEEEEcccEEEEccccHHHHHHcccccEEEEcccEEEcccccccccccEEEEEEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcccEEEEEccccccHHHHHHccccccEEEEEEEEHHHHHHHHcccccHHHcccccHHHHHHHcccccccEEEEcccccccHccEEEEcccccccccHHHHHHHHHccHHHEEEEEEcccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEc
matslanttfFSKTCSLFIHTnslkrfafrvpfsstststsplplkkkwrppaasalelggvkmakddivrddptnnvpdtIFTKLGMQlhkrnqhpigILKNAIYeyfdsnypnkfnkfddlcpivsvkqnfddvlvpadhvsrsyndtyyvdsqtvlrchTSAHQAELLKEHNHFlvtgdvyrrdsidsthypvfhqmegvsifypdewgaaglDATEYAAKDLKRCLEGLARHLFGavemrwvdtyfpftnpsyeleIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVlfdipdirlfwssderftsqfsqgqlgikfkpfskyppcykdmsfwinesftennlcEVVRGVAGDLVEEVRLIDnftnkkgmtshCYRIAYRSmersltdediNELQWNVREQVQSKLNVVLR
matslanttffskTCSLFIHTNSLKRFAFRVPFsstststsplplkkkwrpPAASALelggvkmakddivrddptnNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQfsqgqlgikfkpfSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLidnftnkkgmtshcYRIAYRSMERSLTDEDINELQwnvreqvqsklnvvlr
MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFsstststsPLPLKKKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
******NTTFFSKTCSLFIHTNSLKRFAFRVPF*******************************************NVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVR************
********TFFSKTCSL***************************************************IVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFS************KKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKEHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
Q94K73429 Phenylalanine--tRNA ligas yes no 0.995 0.993 0.740 0.0
Q86A68454 Phenylalanine--tRNA ligas yes no 0.850 0.801 0.477 1e-102
O16129453 Probable phenylalanine--t yes no 0.901 0.852 0.427 7e-97
Q99M01451 Phenylalanine--tRNA ligas yes no 0.890 0.844 0.448 7e-97
Q6AYQ3472 Phenylalanine--tRNA ligas yes no 0.871 0.790 0.437 2e-95
O95363451 Phenylalanine--tRNA ligas yes no 0.864 0.820 0.439 2e-95
O74952429 Phenylalanine--tRNA ligas yes no 0.829 0.827 0.443 6e-90
P08425469 Phenylalanine--tRNA ligas yes no 0.850 0.776 0.368 4e-80
B0C6I2330 Phenylalanine--tRNA ligas yes no 0.425 0.551 0.402 9e-33
Q8YMT4330 Phenylalanine--tRNA ligas yes no 0.425 0.551 0.391 2e-32
>sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1 Back     alignment and function desciption
 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/431 (74%), Positives = 374/431 (86%), Gaps = 5/431 (1%)

Query: 1   MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFSSTSTSTSPLPLKKKWRPPAASALELG 60
           M      +T FS+     + +N  KRF+F   FSS++ + SP P  +K R P  SA+++G
Sbjct: 1   MTVFSVQSTIFSRASVALLSSNGFKRFSFVSSFSSSA-AYSP-PKMRKRRYPIVSAVDIG 58

Query: 61  GVKMAKDDIVR-DDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNK 119
           GV +A++D+VR DDPTNNVPD+IF+KLGMQLH+R++HPIGILKNAIY+YFDSNY NKF K
Sbjct: 59  GVAIARNDVVREDDPTNNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEK 118

Query: 120 FDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKE-HNHFL 178
           F+DL PIV+ KQNFDDVLVPADHVSRS NDTYYVDSQTVLRCHTSAHQAELL++ H+ FL
Sbjct: 119 FEDLSPIVTTKQNFDDVLVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELLRKGHSRFL 178

Query: 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238
           VTGDVYRRDSIDSTHYPVFHQMEG  +F P++W  +G D+T YAA+DLK+CLEGLARHLF
Sbjct: 179 VTGDVYRRDSIDSTHYPVFHQMEGFCVFSPEDWNGSGKDSTLYAAEDLKKCLEGLARHLF 238

Query: 239 GAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGL 298
           G+VEMRWVDTYFPFTNPS+ELEI+FKE+WLEVLGCGVTEQ ILK+SG  NNVAWAFGLGL
Sbjct: 239 GSVEMRWVDTYFPFTNPSFELEIYFKEDWLEVLGCGVTEQVILKQSGLENNVAWAFGLGL 298

Query: 299 ERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTEN 358
           ERLAMVLFDIPDIR FWSSDERFTSQF +G+LG+KFKP+SKYPPCYKD+SFWI++ FTEN
Sbjct: 299 ERLAMVLFDIPDIRFFWSSDERFTSQFGKGELGVKFKPYSKYPPCYKDISFWISDLFTEN 358

Query: 359 NLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVRE 417
           N CEVVRG+AGDLVEEV+LID FTN KKG+TSHCYRI +RSMERSLTDE++N+LQ  VR+
Sbjct: 359 NFCEVVRGIAGDLVEEVKLIDQFTNKKKGLTSHCYRIVFRSMERSLTDEEVNDLQSKVRD 418

Query: 418 QVQSKLNVVLR 428
           +VQ KLNV LR
Sbjct: 419 EVQKKLNVELR 429
Catalyzes direct attachment of p-Tyr (Tyr) to tRNAPhe. Permits also, with a lower efficiency, the attachment of m-Tyr to tRNAPhe, thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q86A68|SYFM_DICDI Phenylalanine--tRNA ligase, mitochondrial OS=Dictyostelium discoideum GN=mpheS PE=3 SV=1 Back     alignment and function description
>sp|O16129|SYFM_DROME Probable phenylalanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster GN=Aats-phe PE=2 SV=3 Back     alignment and function description
>sp|Q99M01|SYFM_MOUSE Phenylalanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Fars2 PE=2 SV=1 Back     alignment and function description
>sp|Q6AYQ3|SYFM_RAT Phenylalanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Fars2 PE=2 SV=1 Back     alignment and function description
>sp|O95363|SYFM_HUMAN Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1 Back     alignment and function description
>sp|O74952|SYFM_SCHPO Phenylalanine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfs1 PE=3 SV=1 Back     alignment and function description
>sp|P08425|SYFM_YEAST Phenylalanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSF1 PE=1 SV=3 Back     alignment and function description
>sp|B0C6I2|SYFA_ACAM1 Phenylalanine--tRNA ligase alpha subunit OS=Acaryochloris marina (strain MBIC 11017) GN=pheS PE=3 SV=1 Back     alignment and function description
>sp|Q8YMT4|SYFA_NOSS1 Phenylalanine--tRNA ligase alpha subunit OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pheS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
224135687426 predicted protein [Populus trichocarpa] 0.990 0.995 0.823 0.0
356569020431 PREDICTED: phenylalanyl-tRNA synthetase, 0.997 0.990 0.8 0.0
225446303427 PREDICTED: phenylalanyl-tRNA synthetase, 0.990 0.992 0.806 0.0
356499632431 PREDICTED: phenylalanyl-tRNA synthetase, 0.997 0.990 0.797 0.0
255576113438 phenylalanyl-tRNA synthetase, putative [ 0.997 0.974 0.799 0.0
359494513449 PREDICTED: LOW QUALITY PROTEIN: phenylal 0.983 0.937 0.764 0.0
359494529442 PREDICTED: LOW QUALITY PROTEIN: phenylal 0.983 0.952 0.760 0.0
195635991447 ATP binding protein [Zea mays] 0.911 0.872 0.790 0.0
297820614430 hypothetical protein ARALYDRAFT_907287 [ 1.0 0.995 0.741 0.0
226503003428 uncharacterized protein LOC100280209 [Ze 0.911 0.911 0.790 0.0
>gi|224135687|ref|XP_002327280.1| predicted protein [Populus trichocarpa] gi|222835650|gb|EEE74085.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/430 (82%), Positives = 389/430 (90%), Gaps = 6/430 (1%)

Query: 1   MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFSSTSTSTSPLPLK-KKWRPPAASALEL 59
           MA SL ++T FSKT  LF+HT +     F    SS   S+S LP   K WR P  S LEL
Sbjct: 1   MALSLVHSTLFSKTSQLFLHTKT----GFSHFSSSIPFSSSALPSNPKTWRRPVISVLEL 56

Query: 60  GGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNK 119
           GGVK+A+DD+VRDDPTNNVPDTIF+KLG+QLH+R+QHP+GILKN IY+YFD+NY NKF+K
Sbjct: 57  GGVKIARDDVVRDDPTNNVPDTIFSKLGLQLHRRDQHPLGILKNTIYDYFDTNYSNKFDK 116

Query: 120 FDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKE-HNHFL 178
           FD+LCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELL++ H HFL
Sbjct: 117 FDELCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLRKGHTHFL 176

Query: 179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238
           VTGDVYRRDSIDSTHYPVFHQMEG  +F PDEW A+G+D T +AA+DLK+CLEGLA HLF
Sbjct: 177 VTGDVYRRDSIDSTHYPVFHQMEGFRVFSPDEWEASGVDGTSFAAEDLKKCLEGLATHLF 236

Query: 239 GAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGL 298
           GAVEMRWVDTYFPFTNPS+ELEI+F+E WLEVLGCGVTEQEILKR+GKLNNVAWAFGLGL
Sbjct: 237 GAVEMRWVDTYFPFTNPSFELEIYFQEKWLEVLGCGVTEQEILKRNGKLNNVAWAFGLGL 296

Query: 299 ERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTEN 358
           ERLAMVLFDIPDIRLFWS+DERFTSQFS+GQLGIKFKPFSKYPPCYKDMSFWINESFTEN
Sbjct: 297 ERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGIKFKPFSKYPPCYKDMSFWINESFTEN 356

Query: 359 NLCEVVRGVAGDLVEEVRLIDNFTNKKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQ 418
           NLCEVVRG+AGDLVEEV LIDNFTNKKGMTSHCYRIAYRSMERSLTDE+IN+LQ +VREQ
Sbjct: 357 NLCEVVRGIAGDLVEEVSLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQMSVREQ 416

Query: 419 VQSKLNVVLR 428
           VQSKLNVVLR
Sbjct: 417 VQSKLNVVLR 426

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356569020|ref|XP_003552705.1| PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|225446303|ref|XP_002270417.1| PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial [Vitis vinifera] gi|296090316|emb|CBI40135.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499632|ref|XP_003518641.1| PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255576113|ref|XP_002528951.1| phenylalanyl-tRNA synthetase, putative [Ricinus communis] gi|223531597|gb|EEF33425.1| phenylalanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359494513|ref|XP_003634792.1| PREDICTED: LOW QUALITY PROTEIN: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494529|ref|XP_003634797.1| PREDICTED: LOW QUALITY PROTEIN: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|195635991|gb|ACG37464.1| ATP binding protein [Zea mays] Back     alignment and taxonomy information
>gi|297820614|ref|XP_002878190.1| hypothetical protein ARALYDRAFT_907287 [Arabidopsis lyrata subsp. lyrata] gi|297324028|gb|EFH54449.1| hypothetical protein ARALYDRAFT_907287 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|226503003|ref|NP_001146612.1| uncharacterized protein LOC100280209 [Zea mays] gi|219888027|gb|ACL54388.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2085455429 AT3G58140 [Arabidopsis thalian 0.995 0.993 0.728 1.6e-175
DICTYBASE|DDB_G0274371454 mpheS "phenylalanine-tRNA synt 0.329 0.310 0.527 1.7e-101
ZFIN|ZDB-GENE-070928-38465 fars2 "phenylalanyl-tRNA synth 0.490 0.451 0.539 1.6e-96
UNIPROTKB|Q08D87446 FARS2 "Uncharacterized protein 0.490 0.470 0.520 2.7e-92
MGI|MGI:1917205451 Fars2 "phenylalanine-tRNA synt 0.490 0.465 0.530 5.5e-92
UNIPROTKB|E2RK98452 FARS2 "Uncharacterized protein 0.490 0.464 0.525 5.5e-92
FB|FBgn0020766453 Aats-phe "Phenylalanyl-tRNA sy 0.497 0.470 0.511 5.5e-92
UNIPROTKB|O95363451 FARS2 "Phenylalanine--tRNA lig 0.490 0.465 0.506 9e-90
POMBASE|SPCC736.03c429 SPCC736.03c "mitochondrial phe 0.436 0.435 0.558 5e-87
ASPGD|ASPL0000001266516 podG [Emericella nidulans (tax 0.436 0.362 0.554 4.5e-84
TAIR|locus:2085455 AT3G58140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
 Identities = 314/431 (72%), Positives = 368/431 (85%)

Query:     1 MATSLANTTFFSKTCSLFIHTNSLKRFAFRVPFXXXXXXXXPLPLKKKWRPPAASALELG 60
             M      +T FS+     + +N  KRF+F   F        P   K+++  P  SA+++G
Sbjct:     1 MTVFSVQSTIFSRASVALLSSNGFKRFSFVSSFSSSAAYSPPKMRKRRY--PIVSAVDIG 58

Query:    61 GVKMAKDDIVR-DDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNK 119
             GV +A++D+VR DDPTNNVPD+IF+KLGMQLH+R++HPIGILKNAIY+YFDSNY NKF K
Sbjct:    59 GVAIARNDVVREDDPTNNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEK 118

Query:   120 FDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLKE-HNHFL 178
             F+DL PIV+ KQNFDDVLVPADHVSRS NDTYYVDSQTVLRCHTSAHQAELL++ H+ FL
Sbjct:   119 FEDLSPIVTTKQNFDDVLVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELLRKGHSRFL 178

Query:   179 VTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLF 238
             VTGDVYRRDSIDSTHYPVFHQMEG  +F P++W  +G D+T YAA+DLK+CLEGLARHLF
Sbjct:   179 VTGDVYRRDSIDSTHYPVFHQMEGFCVFSPEDWNGSGKDSTLYAAEDLKKCLEGLARHLF 238

Query:   239 GAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGL 298
             G+VEMRWVDTYFPFTNPS+ELEI+FKE+WLEVLGCGVTEQ ILK+SG  NNVAWAFGLGL
Sbjct:   239 GSVEMRWVDTYFPFTNPSFELEIYFKEDWLEVLGCGVTEQVILKQSGLENNVAWAFGLGL 298

Query:   299 ERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESFTEN 358
             ERLAMVLFDIPDIR FWSSDERFTSQF +G+LG+KFKP+SKYPPCYKD+SFWI++ FTEN
Sbjct:   299 ERLAMVLFDIPDIRFFWSSDERFTSQFGKGELGVKFKPYSKYPPCYKDISFWISDLFTEN 358

Query:   359 NLCEVVRGVAGDLVEEVRLIDNFTNKK-GMTSHCYRIAYRSMERSLTDEDINELQWNVRE 417
             N CEVVRG+AGDLVEEV+LID FTNKK G+TSHCYRI +RSMERSLTDE++N+LQ  VR+
Sbjct:   359 NFCEVVRGIAGDLVEEVKLIDQFTNKKKGLTSHCYRIVFRSMERSLTDEEVNDLQSKVRD 418

Query:   418 QVQSKLNVVLR 428
             +VQ KLNV LR
Sbjct:   419 EVQKKLNVELR 429
GO:0000049 "tRNA binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0008033 "tRNA processing" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0043039 "tRNA aminoacylation" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
DICTYBASE|DDB_G0274371 mpheS "phenylalanine-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070928-38 fars2 "phenylalanyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q08D87 FARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1917205 Fars2 "phenylalanine-tRNA synthetase 2 (mitochondrial)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RK98 FARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0020766 Aats-phe "Phenylalanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O95363 FARS2 "Phenylalanine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPCC736.03c SPCC736.03c "mitochondrial phenylalanyl-tRNA synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000001266 podG [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94K73SYFM_ARATH6, ., 1, ., 1, ., 2, 00.74010.99530.9930yesno
Q86A68SYFM_DICDI6, ., 1, ., 1, ., 2, 00.47720.85040.8017yesno
O95363SYFM_HUMAN6, ., 1, ., 1, ., 2, 00.43910.86440.8203yesno
Q99M01SYFM_MOUSE6, ., 1, ., 1, ., 2, 00.44890.89010.8447yesno
O16129SYFM_DROME6, ., 1, ., 1, ., 2, 00.42720.90180.8520yesno
O74952SYFM_SCHPO6, ., 1, ., 1, ., 2, 00.44390.82940.8275yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.200.979
3rd Layer6.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_410051
hypothetical protein (426 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•  •  • 0.809
estExt_fgenesh4_pg.C_LG_II2313
hypothetical protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro ass [...] (126 aa)
•     • 0.782
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•  •  • 0.751
gw1.IV.3343.1
annotation not avaliable (109 aa)
•     • 0.744
estExt_Genewise1_v1.C_LG_VI2599
hypothetical protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between [...] (208 aa)
•  •  • 0.731
gw1.X.2264.1
hypothetical protein (594 aa)
   •  • 0.705
estExt_fgenesh4_pg.C_LG_XVIII0906
hypothetical protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between [...] (278 aa)
•  •  • 0.695
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
•     • 0.684
fgenesh4_pm.C_LG_IX000007
hypothetical protein (574 aa)
   •  • 0.671
gw1.X.6174.1
annotation not avaliable (674 aa)
•     • 0.670

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
PLN02788402 PLN02788, PLN02788, phenylalanine-tRNA synthetase 0.0
TIGR00469460 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase 1e-126
cd00496218 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synth 3e-91
COG0016335 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha 2e-63
PRK00488339 PRK00488, pheS, phenylalanyl-tRNA synthetase subun 1e-53
pfam01409245 pfam01409, tRNA-synt_2d, tRNA synthetases class II 1e-51
TIGR00468293 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alp 1e-50
smart0089693 smart00896, FDX-ACB, Ferredoxin-fold anticodon bin 3e-32
PRK04172489 PRK04172, pheS, phenylalanyl-tRNA synthetase subun 8e-30
pfam0314794 pfam03147, FDX-ACB, Ferredoxin-fold anticodon bind 2e-26
COG0072650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 3e-22
PRK00629791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 3e-18
TIGR00472797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 1e-16
CHL00192704 CHL00192, syfB, phenylalanyl-tRNA synthetase beta 5e-12
PTZ00326494 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase a 4e-10
PLN02853492 PLN02853, PLN02853, Probable phenylalanyl-tRNA syn 1e-09
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-05
>gnl|CDD|215422 PLN02788, PLN02788, phenylalanine-tRNA synthetase Back     alignment and domain information 
 Score =  794 bits (2052), Expect = 0.0
 Identities = 313/402 (77%), Positives = 352/402 (87%), Gaps = 5/402 (1%)

Query: 32  PFSSTSTSTSPLPL--KKKWRPPAASALELGGVKMAKDDIVR-DDPTNNVPDTIFTKLGM 88
           PFSS++  T        +++R PA SA+E+GGV +A+D++VR DDPTNNVPD IF+K+GM
Sbjct: 1   PFSSSALVTPATAKSSSRRYRAPAVSAVEIGGVAIARDEVVREDDPTNNVPDHIFSKIGM 60

Query: 89  QLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYN 148
           QLH+R  HP+GILKNAIY+YFD NY NKF KFDDL PIVS KQNFDDVLVP DHVSRSYN
Sbjct: 61  QLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYN 120

Query: 149 DTYYVDSQTVLRCHTSAHQAELLKE-HNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY 207
           DTYYVD+QTVLRCHTSAHQAELL+  H HFLVTGDVYRRDSID+THYPVFHQMEGV +F 
Sbjct: 121 DTYYVDAQTVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSIDATHYPVFHQMEGVRVFS 180

Query: 208 PDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENW 267
           P+EW A+GLD T+ AA+DLK+ LEGLARHLFG VEMRWVD YFPFTNPS+ELEIFFK  W
Sbjct: 181 PEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVEMRWVDAYFPFTNPSFELEIFFKGEW 240

Query: 268 LEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQ 327
           LEVLGCGVTEQEILK +G+ +NVAWAFGLGLERLAMVLFDIPDIRLFWS DERFTSQF +
Sbjct: 241 LEVLGCGVTEQEILKNNGRSDNVAWAFGLGLERLAMVLFDIPDIRLFWSDDERFTSQFKE 300

Query: 328 GQLGIKFKPFSKYPPCYKDMSFWINESFTENNLCEVVRGVAGDLVEEVRLIDNFTN-KKG 386
           GQLG+KFKP+SKYPPCYKD+SFWI++ FTENNLCEVVRG+AGDLVEEV+LIDNFTN KKG
Sbjct: 301 GQLGVKFKPYSKYPPCYKDISFWISDEFTENNLCEVVRGIAGDLVEEVKLIDNFTNPKKG 360

Query: 387 MTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
            TSHCYRI YRSMERSLTDE+IN LQ  VRE+VQ KL V LR
Sbjct: 361 KTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402

Length = 402
>gnl|CDD|129561 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) Back     alignment and domain information
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|214893 smart00896, FDX-ACB, Ferredoxin-fold anticodon binding domain Back     alignment and domain information
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|202554 pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding domain Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240361 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215458 PLN02853, PLN02853, Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
PLN02788402 phenylalanine-tRNA synthetase 100.0
KOG2783436 consensus Phenylalanyl-tRNA synthetase [Translatio 100.0
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 100.0
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 100.0
COG0072650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 100.0
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 100.0
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 100.0
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 100.0
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 100.0
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 100.0
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 100.0
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 100.0
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 100.0
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 100.0
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 99.96
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.96
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 99.96
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.96
PF0314794 FDX-ACB: Ferredoxin-fold anticodon binding domain; 99.95
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 99.95
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 99.94
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.94
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 99.93
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.93
KOG2472578 consensus Phenylalanyl-tRNA synthetase beta subuni 99.79
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.77
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 99.51
PRK08655437 prephenate dehydrogenase; Provisional 99.28
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.53
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 97.87
COG4937171 Predicted regulatory domain of prephenate dehydrog 97.71
PTZ00417585 lysine-tRNA ligase; Provisional 97.55
PRK06462335 asparagine synthetase A; Reviewed 97.54
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.49
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.43
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.4
PRK09350306 poxB regulator PoxA; Provisional 97.38
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.34
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.34
PLN02502553 lysyl-tRNA synthetase 97.34
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 97.28
PTZ00385 659 lysyl-tRNA synthetase; Provisional 97.27
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 97.24
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 97.09
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.03
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.02
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 96.95
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 96.92
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 96.89
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 96.75
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 96.71
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 96.69
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 96.59
PLN02530487 histidine-tRNA ligase 96.53
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 96.45
PTZ00401550 aspartyl-tRNA synthetase; Provisional 96.31
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 96.31
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.24
PLN02850530 aspartate-tRNA ligase 96.2
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 96.14
PRK12444639 threonyl-tRNA synthetase; Reviewed 96.14
PLN02903 652 aminoacyl-tRNA ligase 96.12
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 96.09
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 96.02
PLN02603565 asparaginyl-tRNA synthetase 96.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 95.73
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 95.63
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 95.61
CHL00201430 syh histidine-tRNA synthetase; Provisional 95.61
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 95.56
PLN02532633 asparagine-tRNA synthetase 94.94
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 94.7
PLN02221572 asparaginyl-tRNA synthetase 94.65
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 94.53
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 94.43
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 94.43
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 94.38
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 94.37
PLN02678448 seryl-tRNA synthetase 94.33
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 94.25
PRK04173456 glycyl-tRNA synthetase; Provisional 94.05
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 93.98
TIGR00414418 serS seryl-tRNA synthetase. This model represents 93.98
PLN02908686 threonyl-tRNA synthetase 93.95
PRK00960517 seryl-tRNA synthetase; Provisional 93.75
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 93.71
PRK09194 565 prolyl-tRNA synthetase; Provisional 93.62
PRK12420423 histidyl-tRNA synthetase; Provisional 93.51
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 93.5
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 93.18
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 93.07
PTZ00425586 asparagine-tRNA ligase; Provisional 93.07
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 92.38
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 92.34
PLN02972763 Histidyl-tRNA synthetase 91.57
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 91.3
PRK08661477 prolyl-tRNA synthetase; Provisional 89.69
PRK12325439 prolyl-tRNA synthetase; Provisional 89.32
PRK05431425 seryl-tRNA synthetase; Provisional 89.27
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 89.05
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 88.33
PLN02320502 seryl-tRNA synthetase 88.18
PLN02837614 threonine-tRNA ligase 86.95
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 86.23
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 83.36
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=7.2e-99  Score=759.93  Aligned_cols=391  Identities=79%  Similarity=1.332  Sum_probs=363.7

Q ss_pred             CCCCCCCCCCCCCCCCccEEEECCEEeccCcccc-CCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 014218           38 TSTSPLPLKKKWRPPAASALELGGVKMAKDDIVR-DDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNK  116 (428)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~~g  116 (428)
                      +.+++..+++.++.|....++++|+.|.+|+... +|.|+|||++|++++||++|.+..||+.+++++|+++|.++++.|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~g   88 (402)
T PLN02788          9 TPATAKSSSRRYRAPAVSAVEIGGVAIARDEVVREDDPTNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNK   88 (402)
T ss_pred             ccCCCcccccccCCCceeEEeecCcccccCcccccCCccCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCC
Confidence            4455667788889999999999999988887433 567899999999999999999999999999999999999976569


Q ss_pred             cEEEccCCCccCchhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEEEEeeEEecCCCCCCCCc
Q 014218          117 FNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFLVTGDVYRRDSIDSTHYP  195 (428)
Q Consensus       117 f~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~FEiG~Vyr~d~~d~~~~p  195 (428)
                      |++++.++|+++.++|||+|++|+|||+|.+.|++|.++..+||||++|++.++++ +..++|.+|+|||+|++|++|+|
T Consensus        89 f~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~iD~tH~p  168 (402)
T PLN02788         89 FKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSIDATHYP  168 (402)
T ss_pred             cEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCcEEEEeeEeecCCCCcccCc
Confidence            99998778999999999999999999999999999999999999999999999999 55699999999999999999999


Q ss_pred             ceEEEEEEEEEecCCccccCcccccccHHHHHHHHHHHHHHhcccceeEEeeccCCCCCCCceEEEEECCeeEEEeeeee
Q 014218          196 VFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGAVEMRWVDTYFPFTNPSYELEIFFKENWLEVLGCGV  275 (428)
Q Consensus       196 ~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L~~~~~~~~~~~~~p~~hPg~~a~I~~~g~~iGvlG~G~  275 (428)
                      +||||+|++++.+++|..++.+...+.+.+|||+||.++..+++..+++|.++++||+|||++++|+++|+|+|++|||+
T Consensus       169 ~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~~~~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG~G~  248 (402)
T PLN02788        169 VFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGV  248 (402)
T ss_pred             cceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCeEEEEEECCEEEEEeeEEE
Confidence            99999999999888887654334567899999999999999965567889999999999999999999999999999999


Q ss_pred             ccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCCCccCCCCCCCCCcceeeeEEecCCC
Q 014218          276 TEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQLGIKFKPFSKYPPCYKDMSFWINESF  355 (428)
Q Consensus       276 ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~~~~fkp~SkyP~~~RDiSf~v~~~~  355 (428)
                      +||+|++++|++.+.+||||||||||+|++++|||||+||+.|.||++||...+...+|+|+||||+|+||||||||+++
T Consensus       249 vhP~Vl~~~gi~~~~g~AfglgLeRLaml~~~I~DIRlf~~~D~rfl~Qf~~~~~~~~fkp~SkfP~v~RDiSf~v~~~v  328 (402)
T PLN02788        249 TEQEILKNNGRSDNVAWAFGLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQLGVKFKPYSKYPPCYKDISFWISDEF  328 (402)
T ss_pred             EcHHHHHHcCCCCCcEEEEEEeHHHHHHhhcCCchhhhhhcccHHHHHhccccccccccCcCCCCCCcceeEEEEECCCC
Confidence            99999999999885579999999999999999999999999999999999876542379999999999999999999999


Q ss_pred             CHHHHHHHHHhhcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q 014218          356 TENNLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR  428 (428)
Q Consensus       356 ~~~~i~~~Ir~~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l~~~l~~~LR  428 (428)
                      ++++|+++||+++|++||+|+|||+|+| ++||||+||||+|||+|||||++|||+++++|+++|+++||++||
T Consensus       329 ~~~~i~~~Ir~~~g~lle~V~lfD~Y~g~k~GkkSl~~Rl~yrs~erTLTdeEIn~i~~kI~~~L~~klgv~LR  402 (402)
T PLN02788        329 TENNLCEVVRGIAGDLVEEVKLIDNFTNPKKGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR  402 (402)
T ss_pred             CHHHHHHHHHHhCcCeEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence            9999999999999999999999999999 899999999999999999999999999999999999999999998

>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08655 prephenate dehydrogenase; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
3cmq_A415 Crystal Structure Of Human Mitochondrial Phenylalan 4e-95
3pco_A327 Crystal Structure Of E. Coli Phenylalanine-Trna Syn 2e-29
2rhq_A294 Phers From Staphylococcus Haemolyticus- Rational Pr 1e-28
2akw_A266 Crystal Structure Of T.thermophilus Phenylalanyl-tr 7e-23
1pys_A350 Phenylalanyl-Trna Synthetase From Thermus Thermophi 7e-23
3l4g_A508 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 6e-10
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine Trna Synthetase Length = 415 Back     alignment and structure 
Iteration: 1

 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 247/410 (60%), Gaps = 41/410 (10%)
Query: 50  RPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYF 109
           R P  S +EL G    +DD       +N+   + T++G  LH +  HP+ ++K  + E+F
Sbjct: 9   RAPG-SVVELLGKSYPQDD------HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61
Query: 110 DSNYPNKFNK-----FDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTS 164
              Y  +F       +D+L P+V+  QNFD +L+PADH SR   D YY++   +LR HTS
Sbjct: 62  YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121
Query: 165 AHQAELLKEH-NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAA--------- 214
           AHQ +LL    + FLV GDVYRRD IDS HYP+FHQ+E V +F   E  A          
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQL 181
Query: 215 --------------GLDATEYAAKDLKRCLEGLARHLFG-AVEMRWVDTYFPFTNPSYEL 259
                          ++A +    DLK+ L  L  HLFG  +E+RWVD YFPFT+PS+E+
Sbjct: 182 FEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEM 241
Query: 260 EIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDE 319
           EI F   WLEVLGCGV EQ+++  +G  + + WAFGLGLERLAM+L+DIPDIRLFW  DE
Sbjct: 242 EINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDE 301
Query: 320 RFTSQFSQGQLG--IKFKPFSKYPPCYKDMSFWI-NESFTENNLCEVVRGVAGDLVEEVR 376
           RF  QF    +   +KF+P SKYP    D+SFW+ +E++ EN+  ++VR + GDLVE+V 
Sbjct: 302 RFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVD 361
Query: 377 LIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNV 425
           LID F + K   TSHCYRI YR MER+L+  ++  +   ++E     L V
Sbjct: 362 LIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGV 411
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 327 Back     alignment and structure
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 294 Back     alignment and structure
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna Synthetase Complexed With P-cl-phenylalanine Length = 266 Back     alignment and structure
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 350 Back     alignment and structure
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 508 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 1e-180
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 3e-52
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 1e-50
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 4e-49
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 2e-45
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 2e-44
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 7e-44
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 8e-44
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 5e-43
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 6e-43
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 6e-39
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 2e-24
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 3e-16
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 5e-15
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Length = 415 Back     alignment and structure
 Score =  506 bits (1305), Expect = e-180
 Identities = 181/413 (43%), Positives = 247/413 (59%), Gaps = 40/413 (9%)

Query: 50  RPPAASALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYF 109
           +    S +EL G    +DD       +N+   + T++G  LH +  HP+ ++K  + E+F
Sbjct: 8   QRAPGSVVELLGKSYPQDD------HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61

Query: 110 DSNYPNK-----FNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTS 164
              Y  +     F+ +D+L P+V+  QNFD +L+PADH SR   D YY++   +LR HTS
Sbjct: 62  YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121

Query: 165 AHQAELLKEH-NHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLD------ 217
           AHQ +LL    + FLV GDVYRRD IDS HYP+FHQ+E V +F   E  A   D      
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQL 181

Query: 218 -----------------ATEYAAKDLKRCLEGLARHLFGA-VEMRWVDTYFPFTNPSYEL 259
                            A +    DLK+ L  L  HLFG  +E+RWVD YFPFT+PS+E+
Sbjct: 182 FEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEM 241

Query: 260 EIFFKENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDE 319
           EI F   WLEVLGCGV EQ+++  +G  + + WAFGLGLERLAM+L+DIPDIRLFW  DE
Sbjct: 242 EINFHGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDE 301

Query: 320 RFTSQFSQGQLG--IKFKPFSKYPPCYKDMSFWI-NESFTENNLCEVVRGVAGDLVEEVR 376
           RF  QF    +   +KF+P SKYP    D+SFW+ +E++ EN+  ++VR + GDLVE+V 
Sbjct: 302 RFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVD 361

Query: 377 LIDNFTNKK-GMTSHCYRIAYRSMERSLTDEDINELQWNVREQVQSKLNVVLR 428
           LID F + K   TSHCYRI YR MER+L+  ++  +   ++E     L V  R
Sbjct: 362 LIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 414
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 327 Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Length = 294 Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 665 Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 508 Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Length = 534 Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 648 Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 100.0
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 100.0
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 100.0
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 100.0
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 100.0
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 100.0
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 100.0
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 100.0
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 99.98
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 99.98
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.97
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 99.97
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.95
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.52
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.75
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.68
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.54
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.34
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 98.08
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 97.54
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 97.43
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.34
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.28
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.03
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 97.0
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 96.97
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 96.82
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 96.71
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 96.64
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 96.61
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 96.59
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 96.45
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 96.44
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 96.36
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 96.17
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 96.12
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 96.12
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 95.95
3err_A536 Fusion protein of microtubule binding domain from 95.75
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 95.71
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 95.7
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 95.51
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 95.43
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 95.39
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 95.38
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 95.25
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 95.07
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 94.93
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 94.91
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 94.87
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 94.85
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 94.79
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 94.65
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 94.63
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 94.62
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 94.57
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 94.3
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 94.19
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 94.1
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 94.05
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 93.77
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 93.46
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 93.27
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 93.17
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 91.49
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 87.49
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 87.2
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 83.72
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 82.43
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
Probab=100.00  E-value=4.2e-89  Score=699.84  Aligned_cols=367  Identities=48%  Similarity=0.884  Sum_probs=333.8

Q ss_pred             cEEEECCEEeccCccccCCCCCCCChhHHhhcCCCCCCCCCChHHHHHHHHHHHHhccCC-----CCcEEEccCCCccCc
Q 014218           55 SALELGGVKMAKDDIVRDDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYP-----NKFNKFDDLCPIVSV  129 (428)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~nv~~~i~~~~~r~l~~~~~hPl~~l~~~I~~~l~~~~~-----~gf~e~~~~~pvvs~  129 (428)
                      ..++|+|+.|+     +|+| +|||++|+.+.|+++|.|..||+++++++|+++|.+++.     .||+|++++++++|.
T Consensus        13 ~~~~~~~~~~~-----~~~~-~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~   86 (415)
T 3cmq_A           13 SVVELLGKSYP-----QDDH-SNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTT   86 (415)
T ss_dssp             SEEEETTEEEE-----CCSS-CCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEH
T ss_pred             CcEEECCeeec-----cCcc-ccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccH
Confidence            55999999655     5544 899999999999999999999999999999999998732     289999865788899


Q ss_pred             hhhhhhcCCCCCCccccccccccccCCcccccchhHHHHHHHh-cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEe-
Q 014218          130 KQNFDDVLVPADHVSRSYNDTYYVDSQTVLRCHTSAHQAELLK-EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFY-  207 (428)
Q Consensus       130 ~~nfd~L~~p~dhp~r~~~~np~~~e~~~LRtsL~~~ll~~l~-~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~-  207 (428)
                      ++|||+|++|+|||+|.+.|++|.++..+|||||+|+++++++ ...++|++|+|||+|++|.+|+|.+||++|++++. 
T Consensus        87 ~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~  166 (415)
T 3cmq_A           87 WQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSK  166 (415)
T ss_dssp             HHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEH
T ss_pred             HHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEEec
Confidence            9999999999999999999999999999999999999999998 44599999999999999999999999999999952 


Q ss_pred             -----------------------cCCccccCcccccccHHHHHHHHHHHHHHh-cccceeEEeeccCCCCCCCceEEEEE
Q 014218          208 -----------------------PDEWGAAGLDATEYAAKDLKRCLEGLARHL-FGAVEMRWVDTYFPFTNPSYELEIFF  263 (428)
Q Consensus       208 -----------------------~~~w~~~~~~~~~~~f~dLKg~Le~Ll~~L-~~~~~~~~~~~~~p~~hPg~~a~I~~  263 (428)
                                             +.+|..+. +...++|+|+||+|+.+++.+ +.+.+++|.++++|++|||++|+|++
T Consensus       167 g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~-~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~~~~~p~~hPgr~a~I~~  245 (415)
T 3cmq_A          167 HELFAGIKDGESLQLFEQSSRSAHKQETHTM-EAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF  245 (415)
T ss_dssp             HHHTTTSTTGGGCCSBCCCCCCSSCCTTBCH-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceeccccccceEEEEEecCccccccccccc-ccccccHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCceEEEEEE
Confidence                                   12233211 111234899999999999997 55445788888899999999999999


Q ss_pred             CCeeEEEeeeeeccHHHHHHcCCCCceEEEEEechhHHHHhhcCCccchhccccchhhhhhcccCCC--CccCCCCCCCC
Q 014218          264 KENWLEVLGCGVTEQEILKRSGKLNNVAWAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQGQL--GIKFKPFSKYP  341 (428)
Q Consensus       264 ~g~~iGvlG~G~ihP~vl~~~gi~~~v~~afEL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~~~~--~~~fkp~SkyP  341 (428)
                      +|+||+++|||+|||+|++++||+.+++|+|||+||+|+|++|||||||+||++|.||++||+....  ..+|+|+||||
T Consensus       246 ~g~wlE~lG~G~lhP~Vl~~~gl~~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~~~~~~~~~~~~~~skfP  325 (415)
T 3cmq_A          246 HGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYP  325 (415)
T ss_dssp             TTEEEEEEEEEEECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCC
T ss_pred             CCeeEEEEEEEEeCHHHHHHcCCCCcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcccccccccccccCcCCCC
Confidence            9999999999999999999999988877999999999999999999999999999999999987643  24899999999


Q ss_pred             CcceeeeEEecCC-CCHHHHHHHHHhhcCCceeEEEEEEEEcC-CCCCeeEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 014218          342 PCYKDMSFWINES-FTENNLCEVVRGVAGDLVEEVRLIDNFTN-KKGMTSHCYRIAYRSMERSLTDEDINELQWNVREQV  419 (428)
Q Consensus       342 ~~~RDiSf~v~~~-~~~~~i~~~Ir~~~g~lle~V~l~D~y~g-~~gkkSl~~ri~yrs~drTLt~eEV~~~~~~i~~~l  419 (428)
                      ++.||||||||++ +++++|+++||+++|++|++|+|||+|+| ++||||+||||+||++||||||+|||+++++|+++|
T Consensus       326 ~v~RDla~~v~~~~v~~~~i~~~ir~~~~~lle~v~lfDvy~g~~~gkkSla~rl~~r~~~rTLtd~ev~~~~~~i~~~l  405 (415)
T 3cmq_A          326 AVINDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQREVRHIHQALQEAA  405 (415)
T ss_dssp             CEEEEEEEECCTTCCCHHHHHHHHHHHHGGGEEEEEEEEEEECTTTCCEEEEEEEEECCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CcceeEEEEEcCCCccHHHHHHHHHHhCCCceEEEEEEEEEeCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999 99999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             HHhcCcccC
Q 014218          420 QSKLNVVLR  428 (428)
Q Consensus       420 ~~~l~~~LR  428 (428)
                      ++++||+||
T Consensus       406 ~~~~ga~LR  414 (415)
T 3cmq_A          406 VQLLGVEGR  414 (415)
T ss_dssp             HHHSCCEEC
T ss_pred             HHHhCCEeC
Confidence            999999998
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 428
d1jjca_266 d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alph 7e-53
d1jjcb4104 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase 2e-24
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Length = 266 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

 Score =  175 bits (445), Expect = 7e-53
 Identities = 74/274 (27%), Positives = 120/274 (43%), Gaps = 48/274 (17%)

Query: 84  TKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHV 143
           +  G  L     HPI +++  + E F +     +   +    + S   NFD + +P  H 
Sbjct: 5   SLPGASLFSGGLHPITLMERELVEIFRALG---YQAVEG-PEVESEFFNFDALNIPEHHP 60

Query: 144 SRSYNDTYYV---------------DSQTVLRCHTSAHQAELL---KEHNHFLVTGDVYR 185
           +R   DT+++               + + +LR HTS  Q   +         +V G V+R
Sbjct: 61  ARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFR 120

Query: 186 RDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKRCLEGLARHLFGA-VEMR 244
            +  D+TH  VFHQ+EG+ +    E           A   LK  +  LA+ LFG   ++R
Sbjct: 121 FEQTDATHEAVFHQLEGLVV---GEG---------IAMAHLKGAIYELAQALFGPDSKVR 168

Query: 245 WVDTYFPFTNPSYELEIFF--KENWLEVLGCGVTEQEILKRSGKLNNVA----------- 291
           +   YFPF  P  +  +++     WLE+ G G+   ++ +                    
Sbjct: 169 FQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTG 228

Query: 292 WAFGLGLERLAMVLFDIPDIRLFWSSDERFTSQF 325
           +AFGLG+ERLAM+ + IPDIR F+    +F  QF
Sbjct: 229 FAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 262
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]} Length = 104 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 100.0
d1jjcb4104 Phenylalanyl-tRNA synthetase {Thermus thermophilus 99.96
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 99.95
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.68
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 98.5
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 98.37
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 98.31
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 98.25
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 98.12
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.93
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 96.23
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 95.42
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 94.41
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 94.25
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 93.69
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 93.54
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 93.49
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 93.22
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 92.36
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 90.57
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 89.9
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 89.19
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 88.92
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-53  Score=405.50  Aligned_cols=225  Identities=32%  Similarity=0.610  Sum_probs=205.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhccCCCCcEEEccCCCccCchhhhhhcCCCCCCccccccccccccCC----------
Q 014218           87 GMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQNFDDVLVPADHVSRSYNDTYYVDSQ----------  156 (428)
Q Consensus        87 ~r~l~~~~~hPl~~l~~~I~~~l~~~~~~gf~e~~~~~pvvs~~~nfd~L~~p~dhp~r~~~~np~~~e~----------  156 (428)
                      |+.++.|..||+.+++++|+++|.++   ||.++.. +.++|.++|||.|++|+|||+|...|++|.++.          
T Consensus         8 g~~~~~G~~HPl~~~~~~i~~if~~~---GF~~~~g-p~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~   83 (266)
T d1jjca_           8 GASLFSGGLHPITLMERELVEIFRAL---GYQAVEG-PEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGE   83 (266)
T ss_dssp             CCCCCCCBCCHHHHHHHHHHHHHHTT---TCEECCC-CSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSC
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHc---CCeEeeC-CccccchhhhhcccCCcccchhcccceEEEecccccccCcccc
Confidence            78899999999999999999999999   9999972 446677899999999999999999999999865          


Q ss_pred             -----cccccchhHHHHHHHh---cCCeEEEEeeEEecCCCCCCCCcceEEEEEEEEEecCCccccCcccccccHHHHHH
Q 014218          157 -----TVLRCHTSAHQAELLK---EHNHFLVTGDVYRRDSIDSTHYPVFHQMEGVSIFYPDEWGAAGLDATEYAAKDLKR  228 (428)
Q Consensus       157 -----~~LRtsL~~~ll~~l~---~~~~~FEiG~Vyr~d~~d~~~~p~f~q~~g~~~~~~~~w~~~~~~~~~~~f~dLKg  228 (428)
                           .+||||+++++...+.   .+.++|.+|+|||+|++|++|+|+|||++|+++.            ....+.+||+
T Consensus        84 ~~~~~~lLRTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd------------~~~~~~~Lk~  151 (266)
T d1jjca_          84 EVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVG------------EGIAMAHLKG  151 (266)
T ss_dssp             EECSCEEECSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEE------------TTCCHHHHHH
T ss_pred             cchhhhhhccCCcHHHHHHHhccCCCceEEecccceecCCCCCcccccceeeeeeecc------------ccccHHHHHH
Confidence                 4999999999999987   6789999999999999999999999999999873            2356789999


Q ss_pred             HHHHHHHHhcc-cceeEEeeccCCCCCCCceEEEEE--CCeeEEEeeeeeccHHHHHHcCCCC-----------ceEEEE
Q 014218          229 CLEGLARHLFG-AVEMRWVDTYFPFTNPSYELEIFF--KENWLEVLGCGVTEQEILKRSGKLN-----------NVAWAF  294 (428)
Q Consensus       229 ~Le~Ll~~L~~-~~~~~~~~~~~p~~hPg~~a~I~~--~g~~iGvlG~G~ihP~vl~~~gi~~-----------~v~~af  294 (428)
                      +|+.+++++++ +++++|.+++||||+||.+++|++  +|+|||++|||++||+||++.|++.           -.||||
T Consensus       152 ~l~~~~~~~f~~~~~~R~~p~yFPFTePS~Ev~v~~~~~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~~~~~~~~g~Af  231 (266)
T d1jjca_         152 AIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAF  231 (266)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCTTEEEEEEEEEEEGGGTEEEEEEEEEEECHHHHHHHHHHHHTTTCCCCCTTCEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEecccCCCccCCcceEEEEeecCCcceEEeecccCHHHHHhcCCchhhccCCccccCCeEEEE
Confidence            99999999987 467999999999999999999998  6899999999999999999886531           248999


Q ss_pred             EechhHHHHhhcCCccchhccccchhhhhhccc
Q 014218          295 GLGLERLAMVLFDIPDIRLFWSSDERFTSQFSQ  327 (428)
Q Consensus       295 EL~Le~L~m~~~~i~dirl~ws~d~rf~~qf~~  327 (428)
                      |||||||+|++++|+|||+||+.|.||++||+.
T Consensus       232 GlGlERlAMl~~gI~DIR~f~~~D~rfl~QFk~  264 (266)
T d1jjca_         232 GLGVERLAMLRYGIPDIRYFFGGRLKFLEQFKG  264 (266)
T ss_dssp             EEEHHHHHHHHHTCSCGGGTTTCCHHHHGGGGG
T ss_pred             eecHHHHHHHHcCCChHHHHhcCCHHHHHHhhc
Confidence            999999999999999999999999999999964
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure