Citrus Sinensis ID: 016934

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQRLQQRLVSSSSLQSKSPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
cccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHcccccEEEEEcccHHHHHcccccHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHcccEEEEEccccccccccccccccccccccEEcHHHHHHHHHcccHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEccEEEcEEEcccccccccEEEEEEEEccccccccEEEEEEEEEccccc
ccccccHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccccccccEccccccccccccccccccccccccHcccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccHHHHHHHHHcccEEEEEEccHHHHHHHcccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHcccEEEEEcEEEccccEEEEEccccccccccEcHHHHHHHHHcccHHHHHHHHcccEEEEEEEEEcccccccccccEccccccccEccccccEEEEEEEEEcccccccEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEEc
mlggssrishhlrirecnyhhyhqnqnlglgfcssrIFQLSSFMVRPLSAAIIGENRKQRLQQRLvsssslqskspgemptlpscfsereddrelpaegfspvaggIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMaevfgweprapivakcdrkrvlsswapycgnvapveFQIQFSSVRHLSPQQFVEKLSRELGvrgvvagenyrfgykaagDASELVRLCEEYgmdaciinsvmdkhqdsrdidcndskergqvSSTRVRQALAMGDMKYVSELLGRQHRLIltvndhdelistsnkhrvsvpkscllnlppkegfygnsvllfgeenpvkcricidashihlemdkvgfcnfdhsqdfkllgiefgdlqc
mlggssriSHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQRLQQRLVsssslqskspgemptLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIdcndskergqvsstrvRQALAMGDMKYVSELLGRQHRLILTVNDHDELIstsnkhrvsvpksCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENrkqrlqqrlvsssslqsksPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
*********HHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIG*********************************************FSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVM***************************ALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFG****
**********HLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRP*S*AII*******************************CFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQ*********************TLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCND************RQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
****SSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQRLQQRLVSSS*********MPTLP*CFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQRLQQRLVSSSSLQSKSPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGDLQC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
P57250313 Riboflavin biosynthesis p yes no 0.426 0.517 0.279 8e-11
Q8K9Z1312 Riboflavin biosynthesis p yes no 0.418 0.509 0.253 5e-09
P0AG43313 Riboflavin biosynthesis p yes no 0.563 0.683 0.289 7e-09
P0AG40313 Riboflavin biosynthesis p N/A no 0.563 0.683 0.289 7e-09
P0AG41313 Riboflavin biosynthesis p yes no 0.563 0.683 0.289 7e-09
P0AG42313 Riboflavin biosynthesis p N/A no 0.563 0.683 0.289 7e-09
P73651284 Riboflavin biosynthesis p N/A no 0.368 0.492 0.268 1e-06
Q59263338 Riboflavin biosynthesis p N/A no 0.426 0.479 0.284 4e-06
P54575316 Riboflavin biosynthesis p yes no 0.426 0.512 0.260 1e-05
P44957308 Riboflavin biosynthesis p yes no 0.439 0.542 0.255 3e-05
>sp|P57250|RIBF_BUCAI Riboflavin biosynthesis protein RibF OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=ribF PE=3 SV=1 Back     alignment and function desciption
 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 31/193 (16%)

Query: 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPR---------APIV 154
           +  +V +G FD +H+GH++L     +IG  Y LS I    V  +EP+         AP+ 
Sbjct: 15  SNSVVTIGNFDGIHLGHQKLFSHIYQIGQKYKLSTI----VVLFEPQPLEFLRKNNAPVR 70

Query: 155 AKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQF-VEKLSRELGVRGVVAGENYR 213
               R+++    +    ++  V+F   F S   LS + F +  L  +L ++ +V G ++R
Sbjct: 71  ITKFREKIRRISSYNFDSILCVKFNKSFQS---LSAKDFIINILINKLHLKFIVIGNDFR 127

Query: 214 FGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273
           FG++  G+ + L +L  +Y  +   I          R +  N+ K    +SST +R+AL+
Sbjct: 128 FGFQRNGNINLLKKLGYKYQFNVIKI----------RPLYKNNIK----ISSTNIRKALS 173

Query: 274 MGDMKYVSELLGR 286
             ++K  S LLGR
Sbjct: 174 ENNIKLASLLLGR 186

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2
>sp|Q8K9Z1|RIBF_BUCAP Riboflavin biosynthesis protein RibF OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=ribF PE=3 SV=1 Back     alignment and function description
>sp|P0AG43|RIBF_SHIFL Riboflavin biosynthesis protein RibF OS=Shigella flexneri GN=ribF PE=3 SV=1 Back     alignment and function description
>sp|P0AG40|RIBF_ECOLI Riboflavin biosynthesis protein RibF OS=Escherichia coli (strain K12) GN=ribF PE=1 SV=1 Back     alignment and function description
>sp|P0AG41|RIBF_ECOL6 Riboflavin biosynthesis protein RibF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ribF PE=3 SV=1 Back     alignment and function description
>sp|P0AG42|RIBF_ECO57 Riboflavin biosynthesis protein RibF OS=Escherichia coli O157:H7 GN=ribF PE=3 SV=1 Back     alignment and function description
>sp|P73651|RIBF_SYNY3 Riboflavin biosynthesis protein RibF OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribF PE=3 SV=1 Back     alignment and function description
>sp|Q59263|RIBF_CORAM Riboflavin biosynthesis protein RibF OS=Corynebacterium ammoniagenes GN=ribF PE=1 SV=1 Back     alignment and function description
>sp|P54575|RIBC_BACSU Riboflavin biosynthesis protein RibC OS=Bacillus subtilis (strain 168) GN=ribC PE=3 SV=2 Back     alignment and function description
>sp|P44957|RIBF_HAEIN Riboflavin biosynthesis protein RibF OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribF PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
297806875367 hypothetical protein ARALYDRAFT_487667 [ 0.965 1.0 0.630 1e-132
22326656367 riboflavin biosynthesis protein-like pro 0.965 1.0 0.627 1e-132
224093972391 predicted protein [Populus trichocarpa] 0.978 0.951 0.638 1e-131
42573309351 riboflavin biosynthesis protein-like pro 0.913 0.988 0.632 1e-125
18420664354 riboflavin biosynthesis protein-like pro 0.926 0.994 0.592 1e-116
297742760344 unnamed protein product [Vitis vinifera] 0.742 0.819 0.721 1e-116
356534452372 PREDICTED: uncharacterized protein LOC10 0.95 0.970 0.594 1e-116
21553715354 unknown [Arabidopsis thaliana] 0.926 0.994 0.589 1e-116
359484181276 PREDICTED: riboflavin biosynthesis prote 0.723 0.996 0.736 1e-115
388511169374 unknown [Lotus japonicus] 0.947 0.962 0.595 1e-115
>gi|297806875|ref|XP_002871321.1| hypothetical protein ARALYDRAFT_487667 [Arabidopsis lyrata subsp. lyrata] gi|297317158|gb|EFH47580.1| hypothetical protein ARALYDRAFT_487667 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/376 (63%), Positives = 285/376 (75%), Gaps = 9/376 (2%)

Query: 1   MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQR 60
           ML G SR+  HL     + H++H +  LGLGFC ++I QLSSF +RP        +   +
Sbjct: 1   MLCGGSRVLQHL-----SDHNHHTSIGLGLGFCGAKIVQLSSFFLRPSQGMANSHHFSHK 55

Query: 61  LQQRLVSSSSLQSKSPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGH 120
             Q+++SS    S++PGE+P L +CFS+REDD ELP EG SPV+GGIVALGKFDALHIGH
Sbjct: 56  WHQQMISSFGSHSRTPGEIPILHNCFSQREDDTELPVEGLSPVSGGIVALGKFDALHIGH 115

Query: 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180
           REL IQAS+IG PYLLSF+GMAEV GWEPRAPIVAKCDRKRVL+SWA YCG+ AP E +I
Sbjct: 116 RELTIQASRIGTPYLLSFVGMAEVLGWEPRAPIVAKCDRKRVLTSWASYCGDRAPEEHEI 175

Query: 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240
           +F+SVRHL+PQQFVEKLS+EL V GVVAGENYRFGYKA+GDA ELVRLCEEYG+ A IIN
Sbjct: 176 EFASVRHLTPQQFVEKLSKELRVCGVVAGENYRFGYKASGDAFELVRLCEEYGITAYIIN 235

Query: 241 SVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDEL 300
           SVMDK Q S   D  DSK+RGQVSSTRVRQALA GDMKYVSELLGR HRLIL V   D  
Sbjct: 236 SVMDKKQGSGKRDSGDSKDRGQVSSTRVRQALAAGDMKYVSELLGRAHRLILRVRTQD-- 293

Query: 301 ISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFC 360
               ++  +SVP+S +LNLPP  G Y   +LL G+E+   C + +D S+IH+E ++V  C
Sbjct: 294 --MPSERMISVPRSSILNLPPGNGIYKACLLLVGDESSSPCTVVVDTSNIHVETEEVRLC 351

Query: 361 NFDHSQDFKLLGIEFG 376
           N D SQ+F+LL +EFG
Sbjct: 352 NLDSSQEFRLLSVEFG 367

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|22326656|ref|NP_568192.2| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] gi|17380946|gb|AAL36285.1| unknown protein [Arabidopsis thaliana] gi|20258953|gb|AAM14192.1| unknown protein [Arabidopsis thaliana] gi|197258080|gb|ACH56224.1| RibF2 [Arabidopsis thaliana] gi|332003903|gb|AED91286.1| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224093972|ref|XP_002310055.1| predicted protein [Populus trichocarpa] gi|222852958|gb|EEE90505.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42573309|ref|NP_974751.1| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] gi|332003904|gb|AED91287.1| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18420664|ref|NP_568429.1| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] gi|10177822|dbj|BAB11188.1| unnamed protein product [Arabidopsis thaliana] gi|197258078|gb|ACH56223.1| RibF1 [Arabidopsis thaliana] gi|332005769|gb|AED93152.1| riboflavin biosynthesis protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297742760|emb|CBI35394.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534452|ref|XP_003535768.1| PREDICTED: uncharacterized protein LOC100808911 [Glycine max] Back     alignment and taxonomy information
>gi|21553715|gb|AAM62808.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359484181|ref|XP_002273393.2| PREDICTED: riboflavin biosynthesis protein ribF-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388511169|gb|AFK43646.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
TAIR|locus:2150813367 AT5G08340 [Arabidopsis thalian 0.965 1.0 0.614 1.6e-118
TAIR|locus:2166973354 AT5G23330 [Arabidopsis thalian 0.868 0.932 0.601 8.6e-104
TIGR_CMR|CBU_0391345 CBU_0391 "riboflavin biosynthe 0.457 0.504 0.312 4.3e-12
TIGR_CMR|CHY_1762307 CHY_1762 "riboflavin biosynthe 0.542 0.671 0.287 2.4e-09
UNIPROTKB|O33328331 ribF "Uncharacterized protein" 0.444 0.510 0.317 3.1e-09
TIGR_CMR|NSE_0040303 NSE_0040 "riboflavin biosynthe 0.539 0.676 0.278 6.8e-09
UNIPROTKB|P0AG40313 ribF "bifunctional riboflavin 0.557 0.677 0.295 3.7e-08
TIGR_CMR|GSU_1487322 GSU_1487 "riboflavin biosynthe 0.460 0.543 0.26 2e-07
TIGR_CMR|CPS_1181306 CPS_1181 "riboflavin biosynthe 0.436 0.542 0.264 2.9e-07
TIGR_CMR|DET_0602305 DET_0602 "riboflavin biosynthe 0.639 0.796 0.259 4e-06
TAIR|locus:2150813 AT5G08340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 231/376 (61%), Positives = 278/376 (73%)

Query:     1 MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENXXXX 60
             ML G SR+  HL     + H++H +  LGLGFC ++I QLSSF +RP  A     +    
Sbjct:     1 MLCGGSRVLQHL-----SDHNHHNSIGLGLGFCGAKIVQLSSFFLRPSQAMAKSHHFSRK 55

Query:    61 XXXXXXXXXXXXXXXPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGH 120
                             GE+P L +CFS+REDD ELP EG SPV+GGIVALGKFDALHIGH
Sbjct:    56 LRQRMISSFGSHCRTSGEVPILHNCFSQREDDPELPVEGLSPVSGGIVALGKFDALHIGH 115

Query:   121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180
             REL IQAS+IGAPYLLSF+GMAEV GWEPRAPIVAKCDR+RVL+SWA YCG+ AP E++I
Sbjct:   116 RELTIQASRIGAPYLLSFVGMAEVLGWEPRAPIVAKCDRQRVLTSWASYCGDRAPEEYEI 175

Query:   181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240
             +F+SVRHL+P+QFVEKLS+EL V GVVAGENYRFGYKA+GDASELVRLCEE G+ ACIIN
Sbjct:   176 EFASVRHLTPRQFVEKLSKELRVCGVVAGENYRFGYKASGDASELVRLCEECGITACIIN 235

Query:   241 SVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDEL 300
             SVMD  Q S   D  DSK+RGQVSSTRVRQALA GDM+YVSELLGR HRLIL V   D  
Sbjct:   236 SVMDMKQGSAKRDSGDSKDRGQVSSTRVRQALAAGDMRYVSELLGRAHRLILRVRTQD-- 293

Query:   301 ISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFC 360
                 ++  +SVP+S +LNLPP  G Y   +LL G+E+ V C + +D S+IH+E ++V  C
Sbjct:   294 --MPSERMISVPRSSILNLPPGIGIYKACLLLVGDESSVPCTVVVDTSNIHVETEEVRLC 351

Query:   361 NFDHSQDFKLLGIEFG 376
             N D SQ+F+L+ +EFG
Sbjct:   352 NLDWSQEFRLVSVEFG 367
GO:0003919 "FMN adenylyltransferase activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0009231 "riboflavin biosynthetic process" evidence=IEA
TAIR|locus:2166973 AT5G23330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0391 CBU_0391 "riboflavin biosynthesis protein RibF" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1762 CHY_1762 "riboflavin biosynthesis protein RibF" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|O33328 ribF "Uncharacterized protein" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0040 NSE_0040 "riboflavin biosynthesis protein RibF" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG40 ribF "bifunctional riboflavin kinase / FMN adenylyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1487 GSU_1487 "riboflavin biosynthesis protein RibF" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1181 CPS_1181 "riboflavin biosynthesis protein RibF" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0602 DET_0602 "riboflavin biosynthesis protein RibF" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.2LOW CONFIDENCE prediction!
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
cd02064180 cd02064, FAD_synthetase_N, FAD synthetase, N-termi 6e-37
PRK05627305 PRK05627, PRK05627, bifunctional riboflavin kinase 4e-28
COG0196304 COG0196, RibF, FAD synthase [Coenzyme metabolism] 5e-23
pfam06574158 pfam06574, FAD_syn, FAD synthetase 3e-17
TIGR00083288 TIGR00083, ribF, riboflavin kinase/FMN adenylyltra 2e-13
PRK07143279 PRK07143, PRK07143, hypothetical protein; Provisio 2e-08
TIGR0012566 TIGR00125, cyt_tran_rel, cytidyltransferase-like d 1e-04
cd02039143 cd02039, cytidylyltransferase_like, Cytidylyltrans 0.004
>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme Back     alignment and domain information 
 Score =  131 bits (332), Expect = 6e-37
 Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 26/195 (13%)

Query: 107 IVALGKFDALHIGHRELAIQASKI-----GAPYLLSFIGMAEVF--GWEPRAPIVAKCDR 159
           +VA+G FD +H+GH+ L     KI         +L+F           +    +    ++
Sbjct: 2   VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEK 61

Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAA 219
             +L S       V  + F  +F+S   LS ++FVE L  +L  + VV G ++RFG   +
Sbjct: 62  LELLESLGVDYLLV--LPFDKEFAS---LSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRS 116

Query: 220 GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKY 279
           GDA  L  L ++YG +  ++  V                +  +VSSTR+R+ALA GD++ 
Sbjct: 117 GDAELLKELGKKYGFEVTVVPPVTL--------------DGERVSSTRIREALAEGDVEL 162

Query: 280 VSELLGRQHRLILTV 294
            +ELLGR + +   V
Sbjct: 163 ANELLGRPYSIEGRV 177

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation. Length = 180
>gnl|CDD|235536 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|219090 pfam06574, FAD_syn, FAD synthetase Back     alignment and domain information
>gnl|CDD|232818 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase Back     alignment and domain information
>gnl|CDD|235946 PRK07143, PRK07143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain Back     alignment and domain information
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
TIGR00083288 ribF riboflavin kinase/FMN adenylyltransferase. mu 100.0
COG0196304 RibF FAD synthase [Coenzyme metabolism] 100.0
PRK05627305 bifunctional riboflavin kinase/FMN adenylyltransfe 100.0
PRK07143279 hypothetical protein; Provisional 100.0
cd02064180 FAD_synthetase_N FAD synthetase, N-terminal domain 100.0
PF06574157 FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof 100.0
cd02169297 Citrate_lyase_ligase Citrate lyase ligase. Citrate 99.93
PF01687125 Flavokinase: Riboflavin kinase; InterPro: IPR01586 99.92
smart00764182 Citrate_ly_lig Citrate lyase ligase C-terminal dom 99.92
cd02172144 RfaE_N N-terminal domain of RfaE. RfaE is a protei 99.92
TIGR02199144 rfaE_dom_II rfaE bifunctional protein, domain II. 99.91
TIGR01518125 g3p_cytidyltrns glycerol-3-phosphate cytidylyltran 99.88
cd02170136 cytidylyltransferase cytidylyltransferase. The cyt 99.88
cd02171129 G3P_Cytidylyltransferase glycerol-3-phosphate cyti 99.87
cd02039143 cytidylyltransferase_like Cytidylyltransferase-lik 99.82
PLN02940382 riboflavin kinase 99.81
cd00560277 PanC Pantoate-beta-alanine ligase. PanC Pantoate-b 99.77
PTZ00308 353 ethanolamine-phosphate cytidylyltransferase; Provi 99.75
PRK00380281 panC pantoate--beta-alanine ligase; Reviewed 99.7
PRK13670 388 hypothetical protein; Provisional 99.64
PLN02388177 phosphopantetheine adenylyltransferase 99.57
PRK11316473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.39
COG0615140 TagD Cytidylyltransferase [Cell envelope biogenesi 99.33
KOG3110153 consensus Riboflavin kinase [Coenzyme transport an 99.32
cd02174150 CCT CTP:phosphocholine cytidylyltransferase. CTP:p 99.3
cd02173152 ECT CTP:phosphoethanolamine cytidylyltransferase ( 99.21
PF08218182 Citrate_ly_lig: Citrate lyase ligase C-terminal do 99.18
cd02164143 PPAT_CoAS phosphopantetheine adenylyltransferase d 99.16
PRK00071203 nadD nicotinic acid mononucleotide adenylyltransfe 99.14
TIGR00124332 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP 99.11
PRK08099399 bifunctional DNA-binding transcriptional repressor 99.1
PRK00777153 phosphopantetheine adenylyltransferase; Provisiona 98.98
PRK00168159 coaD phosphopantetheine adenylyltransferase; Provi 98.95
TIGR01527165 arch_NMN_Atrans nicotinamide-nucleotide adenylyltr 98.93
cd02165192 NMNAT Nicotinamide/nicotinate mononucleotide adeny 98.9
PLN02406 418 ethanolamine-phosphate cytidylyltransferase 98.86
cd02163153 PPAT Phosphopantetheine adenylyltransferase. Phosp 98.85
PRK13964140 coaD phosphopantetheine adenylyltransferase; Provi 98.85
cd02166163 NMNAT_Archaea Nicotinamide/nicotinate mononucleoti 98.82
TIGR01510155 coaD_prev_kdtB pantetheine-phosphate adenylyltrans 98.82
cd02167158 NMNAT_NadR Nicotinamide/nicotinate mononucleotide 98.81
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 98.8
PRK01170322 phosphopantetheine adenylyltransferase/unknown dom 98.8
PRK01153174 nicotinamide-nucleotide adenylyltransferase; Provi 98.71
TIGR00482193 nicotinate (nicotinamide) nucleotide adenylyltrans 98.7
COG2870467 RfaE ADP-heptose synthase, bifunctional sugar kina 98.69
TIGR0012566 cyt_tran_rel cytidyltransferase-related domain. Pr 98.64
PLN02413294 choline-phosphate cytidylyltransferase 98.64
TIGR00018282 panC pantoate--beta-alanine ligase. This family is 98.64
PRK08887174 nicotinic acid mononucleotide adenylyltransferase; 98.61
PLN02406418 ethanolamine-phosphate cytidylyltransferase 98.59
COG1057197 NadD Nicotinic acid mononucleotide adenylyltransfe 98.58
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 98.56
PRK06973243 nicotinic acid mononucleotide adenylyltransferase; 98.5
cd02168181 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide 98.5
PLN02945236 nicotinamide-nucleotide adenylyltransferase/nicoti 98.48
PF01467157 CTP_transf_2: Cytidylyltransferase; InterPro: IPR0 98.46
PLN02660284 pantoate--beta-alanine ligase 98.41
cd09286225 NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti 98.35
COG3053352 CitC Citrate lyase synthetase [Energy production a 98.33
PRK05379340 bifunctional nicotinamide mononucleotide adenylylt 98.32
PRK13671298 hypothetical protein; Provisional 98.28
COG1019158 Predicted nucleotidyltransferase [General function 98.25
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 98.21
TIGR00339383 sopT ATP sulphurylase. Members of this family also 98.17
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 98.16
COG0669159 CoaD Phosphopantetheine adenylyltransferase [Coenz 97.99
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 97.54
PRK13793196 nicotinamide-nucleotide adenylyltransferase; Provi 97.21
PRK04149391 sat sulfate adenylyltransferase; Reviewed 97.07
PF01747215 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002 97.0
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 97.0
KOG2804348 consensus Phosphorylcholine transferase/cholinepho 96.86
cd00517353 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also 96.85
PF05636 388 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr 96.82
COG2046397 MET3 ATP sulfurylase (sulfate adenylyltransferase) 96.82
COG1323358 Predicted nucleotidyltransferase [General function 96.74
PRK05537568 bifunctional sulfate adenylyltransferase subunit 1 95.62
COG1056172 NadR Nicotinamide mononucleotide adenylyltransfera 95.48
PF02569280 Pantoate_ligase: Pantoate-beta-alanine ligase; Int 93.38
COG0414285 PanC Panthothenate synthetase [Coenzyme metabolism 91.23
PRK13477 512 bifunctional pantoate ligase/cytidylate kinase; Pr 90.7
KOG3351293 consensus Predicted nucleotidyltransferase [Genera 88.11
KOG3042283 consensus Panthothenate synthetase [Coenzyme trans 86.64
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2e-67  Score=512.64  Aligned_cols=243  Identities=28%  Similarity=0.404  Sum_probs=218.6

Q ss_pred             EEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934          107 IVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI  180 (380)
Q Consensus       107 vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~  180 (380)
                      ++|||+|||+|+|||+||++|++.    +.+ +|+||+| |..++.+...+.+++.++|+++|+++|  +|++++++|+.
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G--vd~~~~~~F~~   78 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG--VEQLLVVVFDE   78 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC--CCEEEEeCCCH
Confidence            489999999999999999987653    544 7899999 999886644334889999999999999  99999999999


Q ss_pred             cccccCCCCHHHHHHHHH-HhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCcc
Q 016934          181 QFSSVRHLSPQQFVEKLS-RELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKE  259 (380)
Q Consensus       181 ~Fa~i~~ls~e~Fie~L~-~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~  259 (380)
                      +|+   ++||++|++.++ +.|+++.||||+|||||++|+||+++|+++++++|++|++++++..+              
T Consensus        79 ~~a---~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~--------------  141 (288)
T TIGR00083        79 EFA---NLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQD--------------  141 (288)
T ss_pred             HHH---cCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCC--------------
Confidence            998   699999999855 57999999999999999999999999999999999999999886432              


Q ss_pred             CCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCC----CCCCCCcEEEEEEEEcCc
Q 016934          260 RGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL----NLPPKEGFYGNSVLLFGE  335 (380)
Q Consensus       260 ~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~----~llP~~GVYav~v~~~g~  335 (380)
                       ++||||+||++|++|||+.||+||||||+++|+|+||+++     ||+||||||||.    .++|+.|||++++.+++.
T Consensus       142 -~~ISST~IR~~l~~G~i~~A~~lLGr~y~i~G~Vv~G~~~-----Gr~lGfPTaNl~~~~~~~~p~~GVYa~~v~i~~~  215 (288)
T TIGR00083       142 -IRISSSAIRQALKNGDLELANKLLGRPYFICGTVIHGQKL-----GRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGE  215 (288)
T ss_pred             -CeECHHHHHHHHHcCCHHHHHHhhhhhhccceEEEecCCC-----cccccCceEEecCcccccCCCcceEEEEEEeCCe
Confidence             6899999999999999999999999999999999999987     999999999995    478999999999999887


Q ss_pred             cc----ceeeceEEeCCceEEEEeeccCCCCCCCCCCceEEEEEcc
Q 016934          336 EN----PVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGD  377 (380)
Q Consensus       336 ~~----~iG~rpt~~~~~~~vE~h~l~~~df~~~~yg~~l~vef~~  377 (380)
                      ++    |||.||||++++..+|||+   +||++|+||+.|.|+|.+
T Consensus       216 ~y~~v~niG~~PT~~~~~~~~E~~i---ldf~~dlYg~~i~v~f~~  258 (288)
T TIGR00083       216 PYPGVGNIGNRPTFIGQQLVIEVHL---LDFSGELYGQEIKVTLVK  258 (288)
T ss_pred             EEEEEEEeCCCCccCCCceEEEEEe---CCCCcccCCCEEEEEeHH
Confidence            65    6899999988777899965   469999999999999953

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
>COG0196 RibF FAD synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed Back     alignment and domain information
>PRK07143 hypothetical protein; Provisional Back     alignment and domain information
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme Back     alignment and domain information
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2 Back     alignment and domain information
>cd02169 Citrate_lyase_ligase Citrate lyase ligase Back     alignment and domain information
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2 Back     alignment and domain information
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain Back     alignment and domain information
>cd02172 RfaE_N N-terminal domain of RfaE Back     alignment and domain information
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II Back     alignment and domain information
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>cd02170 cytidylyltransferase cytidylyltransferase Back     alignment and domain information
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain Back     alignment and domain information
>PLN02940 riboflavin kinase Back     alignment and domain information
>cd00560 PanC Pantoate-beta-alanine ligase Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed Back     alignment and domain information
>PRK13670 hypothetical protein; Provisional Back     alignment and domain information
>PLN02388 phosphopantetheine adenylyltransferase Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02174 CCT CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6 Back     alignment and domain information
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes Back     alignment and domain information
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>PRK00777 phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase Back     alignment and domain information
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>cd02163 PPAT Phosphopantetheine adenylyltransferase Back     alignment and domain information
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal Back     alignment and domain information
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial Back     alignment and domain information
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain Back     alignment and domain information
>PLN02413 choline-phosphate cytidylyltransferase Back     alignment and domain information
>TIGR00018 panC pantoate--beta-alanine ligase Back     alignment and domain information
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain Back     alignment and domain information
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase Back     alignment and domain information
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT) Back     alignment and domain information
>PLN02660 pantoate--beta-alanine ligase Back     alignment and domain information
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic Back     alignment and domain information
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion] Back     alignment and domain information
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Back     alignment and domain information
>PRK13671 hypothetical protein; Provisional Back     alignment and domain information
>COG1019 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>TIGR00339 sopT ATP sulphurylase Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK04149 sat sulfate adenylyltransferase; Reviewed Back     alignment and domain information
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2 Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>cd00517 ATPS ATP-sulfurylase Back     alignment and domain information
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1323 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated Back     alignment and domain information
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis [] Back     alignment and domain information
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism] Back     alignment and domain information
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional Back     alignment and domain information
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
3op1_A308 Crystal Structure Of Macrolide-Efflux Protein Sp_11 4e-09
3zug_A338 E268d Mutant Of Fad Synthetase From Corynebacterium 2e-07
2x0k_A338 Crystal Structure Of Modular Fad Synthetase From Co 2e-07
1mrz_A293 Crystal Structure Of A Flavin Binding Protein From 1e-05
2i1l_A293 Crystal Structure Of The C2 Form Of Fad Synthetase 2e-05
>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From Streptococcus Pneumoniae Length = 308 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFI----GMAEVFGWEPRAP-----IVAKC 157
           +V LG FD +H GH+EL   A+K     LL  +      +     EP  P     I+   
Sbjct: 23  VVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVXTFNESPKIALEPYHPDLFLHILNPA 82
Query: 158 DRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYK 217
           +R+R L         +  ++F  QF+S   L+ Q+F     +    + +VAG +Y FG  
Sbjct: 83  ERERKLKREG--VEELYLLDFSSQFAS---LTAQEFFATYIKAXNAKIIVAGFDYTFG-- 135
Query: 218 AAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDM 277
              D      L   +  +  I+  V D              E+G++SSTR+RQA+  G++
Sbjct: 136 --SDKKTAEDLKNYFDGEVIIVPPVED--------------EKGKISSTRIRQAILDGNV 179
Query: 278 KYVSELLG 285
           K   +LLG
Sbjct: 180 KEAGKLLG 187
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium Ammoniagenes Length = 338 Back     alignment and structure
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From Corynebacterium Ammoniagenes Length = 338 Back     alignment and structure
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From Thermotoga Maritima, Tm379 Length = 293 Back     alignment and structure
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From Thermotoga Maritima Length = 293 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
3op1_A308 Macrolide-efflux protein; structural genomics, PSI 4e-28
2x0k_A338 Riboflavin biosynthesis protein RIBF; riboflavin k 4e-27
1mrz_A293 Riboflavin kinase/FMN adenylyltransferase; rossman 7e-26
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Length = 308 Back     alignment and structure
 Score =  111 bits (279), Expect = 4e-28
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 40/204 (19%)

Query: 100 FSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGM------AEVFGWEPRAPI 153
               +  +V LG FD +H GH+EL   A+K     LL  + M             P  P 
Sbjct: 16  IGTPSDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALE--PYHPD 73

Query: 154 VAKC-----DRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGV 206
           +        +R+R L       G   +  ++F  QF+S   L+ Q+F     + +  + +
Sbjct: 74  LFLHILNPAERERKLKR----EGVEELYLLDFSSQFAS---LTAQEFFATYIKAMNAKII 126

Query: 207 VAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSST 266
           VAG +Y FG            L   +  +  I+  V D+                ++SST
Sbjct: 127 VAGFDYTFGSDKKT----AEDLKNYFDGEVIIVPPVEDEKG--------------KISST 168

Query: 267 RVRQALAMGDMKYVSELLGRQHRL 290
           R+RQA+  G++K   +LLG     
Sbjct: 169 RIRQAILDGNVKEAGKLLGAPLPS 192
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Length = 338 Back     alignment and structure
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Length = 293 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
3op1_A308 Macrolide-efflux protein; structural genomics, PSI 100.0
2x0k_A338 Riboflavin biosynthesis protein RIBF; riboflavin k 100.0
1mrz_A293 Riboflavin kinase/FMN adenylyltransferase; rossman 100.0
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 99.93
3bnw_A181 Riboflavin kinase, putative; APO structure, struct 99.9
1n08_A163 Putative riboflavin kinase; phophoryl transferases 99.9
1nb0_A147 Hypothetical protein FLJ11149; beta barrel, transf 99.88
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 99.83
2ejc_A280 Pantoate--beta-alanine ligase; X-RAY diffraction, 99.81
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 99.8
2qtr_A189 Nicotinate (nicotinamide) nucleotide adenylyltran; 99.79
1v8f_A276 Pantoate-beta-alanine ligase; rossmann fold, dimer 99.77
1o6b_A169 Phosphopantetheine adenylyltransferase; structural 99.77
1qjc_A158 Phosphopantetheine adenylyltransferase; coenzyme A 99.73
3gmi_A357 UPF0348 protein MJ0951; protein with unknown funct 99.72
3ag6_A283 Pantothenate synthetase; ATP-dependent enzyme, ATP 99.71
1od6_A160 PPAT, phosphopantetheine adenylyltransferase; coen 99.71
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 99.67
3cov_A301 Pantothenate synthetase; pantothenate biosynthesis 99.63
1kam_A194 Deamido-NAD(+), nicotinate-nucleotide adenylyltran 99.62
1ej2_A181 Nicotinamide mononucleotide adenylyltransferase; d 99.62
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 99.61
2qjo_A341 Bifunctional NMN adenylyltransferase/nudix hydrol; 99.58
3k9w_A187 Phosphopantetheine adenylyltransferase; niaid, ssg 99.57
1k4m_A213 NAMN adenylyltransferase; nucleotidyltransferase; 99.55
2h29_A189 Probable nicotinate-nucleotide adenylyltransferase 99.27
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 99.24
4f3r_A162 Phosphopantetheine adenylyltransferase; phosphopan 99.21
1f9a_A168 Hypothetical protein MJ0541; alpha/beta, transfera 99.2
1kqn_A279 Nmnat, nicotinamide mononucleotide adenylyl transf 99.17
3f3m_A168 Phosphopantetheine adenylyltransferase; PPAT, coen 99.15
3nv7_A157 Phosphopantetheine adenylyltransferase; helicobact 99.14
1yum_A242 'probable nicotinate-nucleotide adenylyltransferas 99.14
1nup_A252 FKSG76; NAD biosynthesis, mitochondria, pyridine a 99.12
3nd5_A171 Phosphopantetheine adenylyltransferase; PPAT, coen 99.02
1vlh_A173 Phosphopantetheine adenylyltransferase; TM0741, st 98.95
3uk2_A283 Pantothenate synthetase; AMP, structural genomics, 98.9
3nbk_A177 Phosphopantetheine adenylyltransferase; PPAT, PHP; 98.87
3h05_A177 Uncharacterized protein VPA0413; nucleotidylyl, tr 98.79
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 98.69
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 98.65
1v47_A349 ATP sulfurylase; product binding complex, zinc, ri 98.58
1jhd_A396 Sulfate adenylyltransferase; sulfurylase, APS, che 98.5
2qjt_B352 Nicotinamide-nucleotide adenylyltransferase; two i 98.18
3inn_A314 Pantothenate synthetase; ssgcid, SBRI, UW, decode, 98.17
1r6x_A395 ATP:sulfate adenylyltransferase; APS kinase-like d 97.51
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 96.71
2gks_A546 Bifunctional SAT/APS kinase; transferase, sulfuryl 96.59
3mxt_A285 Pantothenate synthetase; alpha-beta-alpha, structu 96.02
1m8p_A573 Sulfate adenylyltransferase; rossmann fold, phosph 95.95
1x6v_B630 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 95.69
3q12_A287 Pantoate--beta-alanine ligase; structural genomics 93.83
3cr8_A 552 Sulfate adenylyltranferase, adenylylsulfate kinase 93.43
3n8h_A264 Pantothenate synthetase; alpha-beta sandwich, liga 92.93
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Back     alignment and structure
Probab=100.00  E-value=3.6e-68  Score=520.57  Aligned_cols=243  Identities=25%  Similarity=0.367  Sum_probs=213.0

Q ss_pred             CceEEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecC-ccccccc-C--CCCCCCChHHHHHHHHhcCCccCeEE
Q 016934          104 AGGIVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIG-MAEVFGW-E--PRAPIVAKCDRKRVLSSWAPYCGNVA  174 (380)
Q Consensus       104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~-P~~vl~~-~--~~~~l~s~~~R~~lL~~lg~~vD~vv  174 (380)
                      .++|+|||+|||||+|||+||++|++.    +.+ +|+||+| |++++.+ +  +..+|++.++|+++|+.+|  ||.++
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG--VD~v~   97 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG--VEELY   97 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT--CCEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC--CCEEE
Confidence            578999999999999999999999876    345 6799999 9998865 2  2345889999999999999  99999


Q ss_pred             EEeccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccC
Q 016934          175 PVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDC  254 (380)
Q Consensus       175 ~~~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~  254 (380)
                      +++|+.+|+   ++||++|++.++++|+++.+|||+|||||+ ++||+++|++++++   +|++++++..++        
T Consensus        98 ~~~F~~~~a---~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~~L~~~~~~---~V~~v~~~~~~~--------  162 (308)
T 3op1_A           98 LLDFSSQFA---SLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAEDLKNYFDG---EVIIVPPVEDEK--------  162 (308)
T ss_dssp             EECCCHHHH---TCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCSTTHHHHCSS---EEEEECCCBCSS--------
T ss_pred             EecCCHHHH---cCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHHHHHHhCCC---CEEEeCCEecCC--------
Confidence            999999999   699999999877899999999999999999 99999999999874   899999887553        


Q ss_pred             CCCccCCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCC----CCCCCCcEEEEEE
Q 016934          255 NDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL----NLPPKEGFYGNSV  330 (380)
Q Consensus       255 ~~~~~~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~----~llP~~GVYav~v  330 (380)
                            ++||||+||++|++|||++|++||||||+++|+|+||+++     ||+||||||||.    +++|++||||+++
T Consensus       163 ------~~ISST~IR~~L~~G~v~~A~~lLGrpy~i~G~Vv~G~~~-----Gr~lGfPTANl~~~~~~~~P~~GVYa~~v  231 (308)
T 3op1_A          163 ------GKISSTRIRQAILDGNVKEAGKLLGAPLPSRGMVVHGNAR-----GRTIGYPTANLVLLDRTYMPADGVYVVDV  231 (308)
T ss_dssp             ------CBCCHHHHHHHHHHTCHHHHHHHHSSCCEEEEEEEBCC-----------CCCCEEEEECSSBCCCCSEEEEEEE
T ss_pred             ------ceEeHHHHHHHHHcCCHHHHHhhcCcceeEEEEEEECCcc-----CcccCCCcEeecCcccccCCCCceEEEEE
Confidence                  7899999999999999999999999999999999999988     999999999994    5889999999999


Q ss_pred             EEcCccc----ceeeceEEeCCceEEEEeeccCCCCCCCCCCceEEEEEcc
Q 016934          331 LLFGEEN----PVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGD  377 (380)
Q Consensus       331 ~~~g~~~----~iG~rpt~~~~~~~vE~h~l~~~df~~~~yg~~l~vef~~  377 (380)
                      .++|.++    |||.||||++....||||++   ||++|+||+.|+|+|.+
T Consensus       232 ~~~~~~~~gv~niG~~PT~~~~~~~vE~hil---df~~dlYG~~i~v~f~~  279 (308)
T 3op1_A          232 EIQRQKYRAMASVGKNVTFDGEEARFEVNIF---DFNQDIYGETVMVYWLD  279 (308)
T ss_dssp             EETTEEEEEEEEECBTTTBC--CCEEEEEET---TCCCCCTTCEEEEEEEE
T ss_pred             EECCEEEEEEEEeccCCccCCCceEEEEEEe---cCCCccCCCEEEEEEHH
Confidence            9988776    68999999887789999665   59999999999999953
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Back     alignment and structure
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei} Back     alignment and structure
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A* Back     alignment and structure
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A* Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Back     alignment and structure
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima} Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Back     alignment and structure
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Back     alignment and structure
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A Back     alignment and structure
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Back     alignment and structure
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Back     alignment and structure
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Back     alignment and structure
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Back     alignment and structure
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Back     alignment and structure
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Back     alignment and structure
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Back     alignment and structure
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Back     alignment and structure
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Back     alignment and structure
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Back     alignment and structure
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Back     alignment and structure
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Back     alignment and structure
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Back     alignment and structure
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Back     alignment and structure
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0 Back     alignment and structure
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Back     alignment and structure
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Back     alignment and structure
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Back     alignment and structure
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A* Back     alignment and structure
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Back     alignment and structure
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0 Back     alignment and structure
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A* Back     alignment and structure
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus} Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Back     alignment and structure
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis} Back     alignment and structure
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Back     alignment and structure
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A* Back     alignment and structure
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Back     alignment and structure
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Back     alignment and structure
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A* Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d1mrza2157 c.26.1.3 (A:2-158) FMN adenylyltransferase domain 3e-15
d1lw7a1163 c.26.1.3 (A:57-219) Transcriptional regulator NadR 3e-07
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Length = 157 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.3 bits (171), Expect = 3e-15
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 23/180 (12%)

Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
           +V++G FD +HIGH+++     +I        +     +  E   P              
Sbjct: 1   VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVE 60

Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELV 226
                    V    +   +     + FVE+      V  VV G ++RFG  A+G+AS L 
Sbjct: 61  MLSRYARTVVLDFFRIKDLTP---EGFVERYLSG--VSAVVVGRDFRFGKNASGNASFLR 115

Query: 227 RLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGR 286
           +      ++   I  V+ + +              +VSS+ +R  +  G ++ +   LGR
Sbjct: 116 KKG----VEVYEIEDVVVQGK--------------RVSSSLIRNLVQEGRVEEIPAYLGR 157
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1mrza2157 FMN adenylyltransferase domain of bifunctional FAD 100.0
d1n08a_154 Riboflavin kinase {Fission yeast (Schizosaccharomy 99.87
d1nb9a_147 Riboflavin kinase {Human (Homo sapiens) [TaxId: 96 99.85
d1mrza1130 Riboflavin kinase domain of bifunctional FAD synth 99.83
d1coza_126 CTP:glycerol-3-phosphate cytidylyltransferase {Bac 99.59
d1f9aa_164 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.39
d1lw7a1163 Transcriptional regulator NadR, NMN-adenylyltransf 99.34
d1ej2a_167 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.11
d1jhda2223 ATP sulfurylase catalytic domain {Sulfur-oxidizing 98.79
d1kama_189 Nicotinamide mononucleotide (NMN) adenylyltransfer 98.71
d1nuua_233 Cytosolic NMN/NAMN adenylyltransferase {Human (Hom 98.64
d1kr2a_271 Nicotinamide mononucleotide (NMN) adenylyltransfer 98.59
d1qjca_157 Phosphopantetheine adenylyltransferase {Escherichi 98.57
d1o6ba_163 Phosphopantetheine adenylyltransferase {Bacillus s 98.56
d1od6a_160 Phosphopantetheine adenylyltransferase {Thermus th 98.54
d1k4ma_213 Nicotinamide mononucleotide (NMN) adenylyltransfer 98.49
d1tfua_157 Phosphopantetheine adenylyltransferase {Mycobacter 98.49
d1vlha_157 Phosphopantetheine adenylyltransferase {Thermotoga 98.42
d1v47a2214 ATP sulfurylase catalytic domain {Thermus thermoph 97.35
d1g8fa2221 ATP sulfurylase catalytic domain {Baker's yeast (S 97.28
d2a84a1286 Pantothenate synthetase (Pantoate-beta-alanine lig 96.44
d1x6va2235 ATP sulfurylase catalytic domain {Human (Homo sapi 96.4
d1ihoa_282 Pantothenate synthetase (Pantoate-beta-alanine lig 95.3
d1v8fa_276 Pantothenate synthetase (Pantoate-beta-alanine lig 94.83
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.3e-40  Score=290.04  Aligned_cols=152  Identities=30%  Similarity=0.479  Sum_probs=129.1

Q ss_pred             EEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934          107 IVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ  181 (380)
Q Consensus       107 vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~  181 (380)
                      |+|||+|||+|+|||+||++|++.    +.+ +|+||++|.+++.++....+++.++|+++|+.+|  +|  ++++|+ +
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~g--~~--~~l~f~-~   75 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA--RT--VVLDFF-R   75 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS--CE--EEECHH-H
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhccc--ce--eeehhh-h
Confidence            589999999999999999988653    555 7799998656665544445888999999999987  44  456776 3


Q ss_pred             ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934          182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG  261 (380)
Q Consensus       182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~  261 (380)
                      |+   +++|++|++.++  .+++.||||+|||||++|+||+++|+    ++|+++.+++++..++              +
T Consensus        76 ~~---~ls~~~Fi~~~l--~~~~~ivvG~Df~FG~~r~G~~~~Lk----~~g~~v~~i~~~~~~~--------------~  132 (157)
T d1mrza2          76 IK---DLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLR----KKGVEVYEIEDVVVQG--------------K  132 (157)
T ss_dssp             HT---TCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHH----HTTCEEEEECCCEETT--------------E
T ss_pred             Hh---hhhhhHHHHHHh--hcCcEEEEecCcccccccccchhhhc----cceeEEEeeccEeeCC--------------c
Confidence            55   799999999865  37899999999999999999999996    4689999999887654              7


Q ss_pred             ccchHHHHHHHHcCCchhhhhhcce
Q 016934          262 QVSSTRVRQALAMGDMKYVSELLGR  286 (380)
Q Consensus       262 ~ISST~IR~~L~~GdI~~An~LLGr  286 (380)
                      +||||+||++|++|||++||+||||
T Consensus       133 ~ISST~IR~~l~~G~i~~A~~lLGR  157 (157)
T d1mrza2         133 RVSSSLIRNLVQEGRVEEIPAYLGR  157 (157)
T ss_dssp             ECCHHHHHHHHHTTCTTTTHHHHSS
T ss_pred             EEcHHHHHHHHHcCCHHHHHHhcCC
Confidence            8999999999999999999999998
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]} Back     information, alignment and structure
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Back     information, alignment and structure
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure