Citrus Sinensis ID: 019692
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| Q96P11 | 429 | Putative methyltransferas | yes | no | 0.753 | 0.592 | 0.414 | 2e-50 | |
| Q8K4F6 | 465 | Putative methyltransferas | yes | no | 0.816 | 0.591 | 0.396 | 1e-46 | |
| O14039 | 460 | Putative methyltransferas | yes | no | 0.661 | 0.484 | 0.425 | 4e-40 | |
| P53972 | 490 | Uncharacterized protein Y | yes | no | 0.804 | 0.553 | 0.307 | 9e-34 | |
| Q63ZY6 | 315 | Putative methyltransferas | no | no | 0.563 | 0.603 | 0.404 | 3e-33 | |
| P94464 | 447 | Ribosomal RNA small subun | yes | no | 0.640 | 0.483 | 0.306 | 3e-20 | |
| Q3KNT7 | 163 | Putative NOL1/NOP2/Sun do | no | no | 0.296 | 0.613 | 0.444 | 3e-18 | |
| Q6D4C8 | 484 | Ribosomal RNA small subun | yes | no | 0.670 | 0.466 | 0.327 | 3e-18 | |
| A4SMI9 | 476 | Ribosomal RNA small subun | yes | no | 0.649 | 0.460 | 0.332 | 2e-17 | |
| A1SWV0 | 481 | Ribosomal RNA small subun | yes | no | 0.744 | 0.521 | 0.297 | 1e-16 |
| >sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 162/287 (56%), Gaps = 33/287 (11%)
Query: 30 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYVRVNTLKMDVDSAVLEL--- 84
H+ ++ LA+L V V EDL+ + P PR+VRVNTLK D V
Sbjct: 98 HQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQ 157
Query: 85 ------------------GKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS 126
GK F++ D L+P+LL+ P DLH HPL G + LQ +AS
Sbjct: 158 GFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTDLHEHPLYRAGHLILQDRAS 215
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
+ A L P PG V+DAC+APGNKT HLAAL+K +GKI A +L+ +R+ + + +G
Sbjct: 216 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG 275
Query: 187 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
+ E+ DFL + P DP Y EV ILLDPSCSGSG + +L+ T P
Sbjct: 276 VSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLE-----EPGAGTPSPV- 329
Query: 247 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENEDV++ L
Sbjct: 330 --RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDAL 374
|
May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 169/305 (55%), Gaps = 30/305 (9%)
Query: 26 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPD--VPKPRYVRVNTLKMDVDSAVLE 83
L H+ ++ LA+L V V EDL+ P PR+VRVNTLK + A+
Sbjct: 94 LLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAIDY 153
Query: 84 LGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLHVHPLIVNGCVFLQGK 124
+Q F Q + + DL L+ P DLH HPL G + LQ K
Sbjct: 154 FKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDK 213
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
AS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI A + + +R+ + +
Sbjct: 214 ASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVAR 273
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 244
+G + E+ DFL + P D YS+V+ ILLDPSCSGSG + +L+ H G P
Sbjct: 274 AGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEE----HGEG---TP 326
Query: 245 TEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304
++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENEDV++ L S F+LA
Sbjct: 327 SK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENEDVVQEALQ-HNSGTFRLA 384
Query: 305 TPFPN 309
P
Sbjct: 385 PVLPT 389
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 140/247 (56%), Gaps = 24/247 (9%)
Query: 62 VPKPRYVRVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLH 109
V PR++R+NT+K +D S++ ELG +F + DD V +L+ + P +
Sbjct: 128 VSLPRWLRINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIV 185
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVA 167
+ L G V +Q KAS AA LA G ++D C+APGNKT HLAA K I A
Sbjct: 186 ENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFA 244
Query: 168 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 227
E + +RV+ L+ + +SGA N+ + H DF DPK Y V ILLDPSCSGSG +
Sbjct: 245 FERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS- 303
Query: 228 RLDHLLPSHASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
R D+LL G+ D TE ERL L +FQ L+HAL FP V YSTCS+H++ENE
Sbjct: 304 RQDYLL-----GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENE 358
Query: 287 DVIKSVL 293
V+ VL
Sbjct: 359 QVVCEVL 365
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 159/315 (50%), Gaps = 44/315 (13%)
Query: 19 PVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDL-MALYQTPDVPKPRYVRVNTLKM-- 75
P+ D +++ K + + +L ++ KV+ + +L ++ + D+P R++R+N LK
Sbjct: 109 PIKD---YVLKFKSPLHSEMVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHP 165
Query: 76 --DVDSAVLELGKQFVVQ-------------KDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+ + + EL K+F ++ D+ +P+L + P + H L +G +
Sbjct: 166 NGETEPVLAELRKKFTLKVDKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKII 225
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKER 174
+Q +AS A L P P V+D+CSAPGNKT H A+ + +I A E + ER
Sbjct: 226 IQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPER 285
Query: 175 VRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL---- 229
+ L+ IK++G + NI V GDF L + Y +V ++DPSCSGSG +
Sbjct: 286 AKVLQKMIKIAGCSPNISVNVGDFTKLATPE-KYKDVTCFIVDPSCSGSGIFGRKFFDSF 344
Query: 230 -----------DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278
++P A RL KLS+FQ + ++HA+SFP +++VYSTC
Sbjct: 345 NRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMVKHAMSFPAAKKIVYSTC 404
Query: 279 SIHQVENEDVIKSVL 293
SIH ENE V+ +L
Sbjct: 405 SIHAEENERVVIDLL 419
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 96 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 155
+P+LL+ P DLH HPL G + LQ +AS + A L P+ KT HL
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60
Query: 156 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215
AAL+K +GKI A +L+ R+ + + +G + E+ DFL + P DP Y EV +LL
Sbjct: 61 AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLL 120
Query: 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275
DPSCSGSG + +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VY
Sbjct: 121 DPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVY 172
Query: 276 STCSIHQVENEDVIKSVL 293
S CS+ Q ENED+++ L
Sbjct: 173 SMCSLCQEENEDMVQDAL 190
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+P + +RVN +K D + ++ + + V+K DL D + L G H NG V
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++S +VA AL PK VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAILLDPSCSGSGTAAERLDHLLPSHAS 238
G + ++H + ++ + + IL+D CSG G + D
Sbjct: 295 AADRLG---LTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPD-------M 344
Query: 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGVER---VVYSTCSIHQVENEDVIKSVL 293
+T P + RL ++ Q LR P V++ +VYSTC++ + EN++VI + +
Sbjct: 345 KYTKKPDDSARLAEI---QLSILREIA--PLVKKGGTLVYSTCTMDRTENDEVIHAFI 397
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q3KNT7|NSN5B_HUMAN Putative NOL1/NOP2/Sun domain family member 5B OS=Homo sapiens GN=NSUN5P1 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPT 245
G + E+ DFL + P DP Y EV +LLDPSCSGSG + +L+ T P
Sbjct: 9 GVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLED-----PGAGTPSPV 63
Query: 246 EMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED++ L
Sbjct: 64 ---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDAL 108
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Homo sapiens (taxid: 9606) |
| >sp|Q6D4C8|RSMF_ERWCT Ribosomal RNA small subunit methyltransferase F OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 128/272 (47%), Gaps = 46/272 (16%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 108
S+ED +A Q P R +RVNTLK+ VD A L+L + + Q + + P C
Sbjct: 26 SMEDFIAACQRP---LRRSIRVNTLKISVD-AFLQLAQPYGWQLEPI--------PWCQE 73
Query: 109 HVHPLI--------------VNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNK 151
L ++G ++Q +S + A+AL PG +LD +APG+K
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG-TILDVAAAPGSK 132
Query: 152 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211
T +AA + +G IVA E + RV+ L I G +N + H D P Y +
Sbjct: 133 TTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFD-- 190
Query: 212 AILLDPSCSGSGTAAERLDHLLPSHASGHT-ADPTEMERLNKLSAFQKKALRHALSFPGV 270
AILLD CSG G R D SH S + D +R LSAF HAL GV
Sbjct: 191 AILLDAPCSGEGVV--RKDPAAMSHWSQESITDIAATQRDLILSAF------HALKPGGV 242
Query: 271 ERVVYSTCSIHQVENEDV---IKSVLPIAMSF 299
++YSTC++++ EN+ V +++ P A F
Sbjct: 243 --MIYSTCTLNRQENQQVCRWLQAQFPDACEF 272
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas salmonicida (strain A449) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 55/274 (20%)
Query: 63 PKPRYVRVNTLKMDVDSAVLE---LGKQF-----------VVQKDDLVPDLLILPPGCDL 108
P R +RVNTLK+ V V++ LG QF + + D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVSDFVMQMQPLGWQFDAVPWCETGFWLTRADESVP----------L 84
Query: 109 HVHPLIVNGCVFLQGKASSM--VAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKG 163
++G ++Q +ASSM V A A K +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 223
+VA E + R++ L I+ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 224 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 280
T + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 TVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 281 HQVENEDVIKSVLPIAMSFG-----FQLATPFPN 309
Q EN+ V +S+L FG LA FPN
Sbjct: 250 SQQENQAVCQSLLE---KFGDALTLDSLADLFPN 280
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Aeromonas salmonicida (strain A449) (taxid: 382245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
| >sp|A1SWV0|RSMF_PSYIN Ribosomal RNA small subunit methyltransferase F OS=Psychromonas ingrahamii (strain 37) GN=rsmF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 45 NKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPP 104
N++K IED +A+ Q P R +RVNTLK+ V+ + +Q V L P
Sbjct: 21 NQLK-IEDFIAVCQRP---LRRAIRVNTLKISVEKFQIRAQEQGWV---------LTAIP 67
Query: 105 GC------DLHVHPL-------IVNGCVFLQGKASSMVAAAL----APKPGWKVLDACSA 147
C +L P + G ++Q +S + AAL P VLDA +A
Sbjct: 68 WCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVLDAAAA 127
Query: 148 PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207
PG+KT +AA M G I+ E + R++ L I+ G N+ + H D P
Sbjct: 128 PGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGKWLPGT 187
Query: 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD---PTEMERLNKLSAFQKKALRHA 264
+ AILLD CSG GT R D ++ S + + T+ E + LSAF HA
Sbjct: 188 FD--AILLDAPCSGEGTV--RKDKYAMNNWSQSSINEIASTQQELI--LSAF------HA 235
Query: 265 LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIY 324
L G+ ++YSTC++ EN+D+ F L FP E +FL +++
Sbjct: 236 LKEDGI--LIYSTCTLSHEENQDIC-----------FFLKDKFP----EHIEFLDLETLF 278
Query: 325 FEPIQWKTKKAFL 337
+ + +T + FL
Sbjct: 279 TDAKKTRTAEGFL 291
|
Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. Psychromonas ingrahamii (strain 37) (taxid: 357804) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| 343887284 | 534 | NOL1/NOP2/sun family protein [Citrus uns | 0.860 | 0.543 | 0.886 | 1e-162 | |
| 359476259 | 508 | PREDICTED: putative methyltransferase NS | 0.860 | 0.570 | 0.8 | 1e-135 | |
| 296081680 | 626 | unnamed protein product [Vitis vinifera] | 0.857 | 0.461 | 0.802 | 1e-134 | |
| 255550109 | 497 | williams-beuren syndrome critical region | 0.845 | 0.573 | 0.733 | 1e-123 | |
| 224092121 | 433 | predicted protein [Populus trichocarpa] | 0.839 | 0.653 | 0.739 | 1e-120 | |
| 449447153 | 509 | PREDICTED: putative methyltransferase NS | 0.851 | 0.563 | 0.716 | 1e-118 | |
| 356507034 | 494 | PREDICTED: putative methyltransferase NS | 0.848 | 0.578 | 0.737 | 1e-116 | |
| 30690149 | 567 | NOL1/NOP2/sun family protein [Arabidopsi | 0.854 | 0.507 | 0.703 | 1e-114 | |
| 297808641 | 514 | predicted protein [Arabidopsis lyrata su | 0.854 | 0.560 | 0.696 | 1e-113 | |
| 356514695 | 502 | PREDICTED: putative methyltransferase NS | 0.854 | 0.573 | 0.708 | 1e-112 |
| >gi|343887284|dbj|BAK61830.1| NOL1/NOP2/sun family protein [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 288/325 (88%), Positives = 289/325 (88%), Gaps = 35/325 (10%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS
Sbjct: 124 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 183
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW
Sbjct: 184 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 243
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA----------- 188
KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA
Sbjct: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAKFKVLLFVMMH 303
Query: 189 ------------------------NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGT 224
+IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGT
Sbjct: 304 YLYSMIHAFQLLSILFRNSLNQPEDIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGT 363
Query: 225 AAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE 284
AAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE
Sbjct: 364 AAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE 423
Query: 285 NEDVIKSVLPIAMSFGFQLATPFPN 309
NEDVIKSVLPIAMSFGFQLATPFP
Sbjct: 424 NEDVIKSVLPIAMSFGFQLATPFPQ 448
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476259|ref|XP_002279425.2| PREDICTED: putative methyltransferase NSUN5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/290 (80%), Positives = 259/290 (89%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+DV+S
Sbjct: 122 VGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLDVES 181
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
A ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+PGW
Sbjct: 182 AFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPEPGW 241
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGDFLN
Sbjct: 242 EVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDFLN 301
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+P DP+YS+VRAILLDPSCSGSGT AERLDHLLPS+A+G D ERLNKL+AFQKK
Sbjct: 302 LNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQKK 361
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPN 309
AL HALSFP VE+VVYSTCSIHQ+ENEDVIKSVLP+A S GFQLATPFP
Sbjct: 362 ALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQ 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/289 (80%), Positives = 259/289 (89%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+DV+S
Sbjct: 122 VGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLDVES 181
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
A ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+PGW
Sbjct: 182 AFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPEPGW 241
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGDFLN
Sbjct: 242 EVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDFLN 301
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+P DP+YS+VRAILLDPSCSGSGT AERLDHLLPS+A+G D ERLNKL+AFQKK
Sbjct: 302 LNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQKK 361
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
AL HALSFP VE+VVYSTCSIHQ+ENEDVIKSVLP+A S GFQLATPFP
Sbjct: 362 ALEHALSFPAVEKVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFP 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/289 (73%), Positives = 251/289 (86%), Gaps = 4/289 (1%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
VGD EKFL+ K +Q ALA++LVR K K+I+DL+ALY+ PDV KP YVRVNTLK DVDS
Sbjct: 126 VGDVEKFLLRRKNDLQRALAKVLVRKKAKTIDDLLALYRPPDVSKPCYVRVNTLKSDVDS 185
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
A+LELG+QF VQKDD+VP+L +LPP DLH HPL+++G +F+QGKASSMVA AL PKPGW
Sbjct: 186 ALLELGRQFTVQKDDMVPNLFVLPPNSDLHNHPLVLDGSIFVQGKASSMVAVALDPKPGW 245
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKTVH+AALM+GKG+I+ACELNK+R++RL+DT++LSGAANIEV H DFLN
Sbjct: 246 EVLDACSAPGNKTVHVAALMRGKGRIIACELNKDRIKRLEDTVRLSGAANIEVRHCDFLN 305
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+P+D +S++RAILLDPSCSGSGTAA+RLDHLLPSHA+ DP MERL KL+AFQKK
Sbjct: 306 LNPRDSPFSKIRAILLDPSCSGSGTAAQRLDHLLPSHAT----DPNNMERLKKLAAFQKK 361
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
AL HALSFP VERVVYSTCSI+Q ENEDVI S+LPIA S GFQL TPFP
Sbjct: 362 ALAHALSFPAVERVVYSTCSINQTENEDVIISILPIAASHGFQLVTPFP 410
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa] gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/288 (73%), Positives = 248/288 (86%), Gaps = 5/288 (1%)
Query: 21 GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80
GDAEKFL K A+Q ALA+L+VR K K+I+D +ALYQ PD+ KP YVRVNTLK+DVDSA
Sbjct: 116 GDAEKFLACRKDAMQSALAKLVVRKKAKNIDDFIALYQPPDITKPCYVRVNTLKLDVDSA 175
Query: 81 VLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWK 140
+ ELGKQF VQKDD++P LL+LPP DLH H L++NG +F+QGKASSMVAA L PKPGW+
Sbjct: 176 LHELGKQFKVQKDDMIPHLLVLPPHTDLHNHSLVLNGSIFVQGKASSMVAAVLDPKPGWE 235
Query: 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200
VLDACSAPGNKTVHLAALMKGKGKI+ACELNK+R +RL+DTI+LSGAANIEVLHGDFLN+
Sbjct: 236 VLDACSAPGNKTVHLAALMKGKGKIIACELNKDRAKRLEDTIRLSGAANIEVLHGDFLNI 295
Query: 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260
DPK P +S+V AILLDPSCSGSGTAA+RLDHLLPS T D + ERLNKL+AFQKKA
Sbjct: 296 DPKGP-FSKVSAILLDPSCSGSGTAAQRLDHLLPS----RTTDVVDTERLNKLAAFQKKA 350
Query: 261 LRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
L HALSF V+R+VYSTCSI+Q+ENEDV+ S+LP+A S GFQLATPFP
Sbjct: 351 LAHALSFTAVKRIVYSTCSINQIENEDVVNSILPLATSNGFQLATPFP 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447153|ref|XP_004141333.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] gi|449529369|ref|XP_004171672.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/289 (71%), Positives = 246/289 (85%), Gaps = 2/289 (0%)
Query: 21 GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT-PDVPKPRYVRVNTLKMDVDS 79
GDAEKFLM + A+Q A+ QLL + K +IEDL+A P V +PR+VRVNTLKMDV +
Sbjct: 125 GDAEKFLMRQQSALQSAVTQLLSKKKANNIEDLIARGDDGPGVSRPRFVRVNTLKMDVHT 184
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
A+ ELGK++ VQKDD+V DLLILPPG DLH HPL+ +G +FLQGKASSMVA AL PKPGW
Sbjct: 185 AIEELGKRYAVQKDDMVSDLLILPPGSDLHDHPLVADGSIFLQGKASSMVAVALDPKPGW 244
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKTVHLA+LM GKG+++ACELN+ RV+RL+ TIKLSGA+NI+VLHGDFLN
Sbjct: 245 EVLDACSAPGNKTVHLASLMHGKGRVIACELNENRVKRLRHTIKLSGASNIDVLHGDFLN 304
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+PKDP+ S+VRAILLDPSCSGSGTAA RLDHLLPSHA G T ++ERLNKL+AFQ+K
Sbjct: 305 LNPKDPSLSKVRAILLDPSCSGSGTAAVRLDHLLPSHAEG-TISGDDLERLNKLAAFQRK 363
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
AL HA SFP VE++VYSTCSIHQ+ENEDV++SVLP+A S GFQL TPFP
Sbjct: 364 ALAHAFSFPAVEKIVYSTCSIHQIENEDVVQSVLPLAESRGFQLDTPFP 412
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507034|ref|XP_003522276.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/289 (73%), Positives = 254/289 (87%), Gaps = 3/289 (1%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
VGDAEK+LM H+ A++ L QLL++ VK+++ L+AL+Q PD+ PRYVRVNTLK+DVDS
Sbjct: 117 VGDAEKYLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDS 176
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
A+LEL K++ VQKD+L+PDLLILPPG DLH HPL+ NG +FLQGKASSM A AL+P+PGW
Sbjct: 177 ALLELQKKYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGW 236
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDAC+APGNKTVHLAALMK KGKI+ACEL KER++RLKDTIKLSGA+NI+VL+ DFLN
Sbjct: 237 EVLDACAAPGNKTVHLAALMKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLN 296
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+PKDP+YS+V+AILLDPSCSGSGTAA RLDHLLPS A+G AD MERLNKL+ FQ+K
Sbjct: 297 LNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDAD---MERLNKLATFQRK 353
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
AL+HAL FP VER+VYSTCSI+Q+ENEDVIKSVLPIA S GFQLA PFP
Sbjct: 354 ALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFP 402
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690149|ref|NP_851079.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|30690152|ref|NP_197990.2| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|26450438|dbj|BAC42333.1| unknown protein [Arabidopsis thaliana] gi|30793929|gb|AAP40417.1| unknown protein [Arabidopsis thaliana] gi|332006150|gb|AED93533.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|332006151|gb|AED93534.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/290 (70%), Positives = 242/290 (83%), Gaps = 2/290 (0%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
+GDAEKFLM HK A+ LA LLVR KV S++ L+ T + KPRYVRVNTLKMDVDS
Sbjct: 188 IGDAEKFLMRHKEALLSGLATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDS 246
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
AV EL K + VQKD+ VPDLL+LPPG DLH H L+ NG +FLQGKASSMVAAAL P+ GW
Sbjct: 247 AVQELEKHYTVQKDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGW 306
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSGA+NIEV HGDFL
Sbjct: 307 EVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVKRLEHTIKLSGASNIEVCHGDFLG 366
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+PKDP+++++RAILLDPSCSGSGT +RLDHLLPSH+ + + M RL+KL+ FQKK
Sbjct: 367 LNPKDPSFAKIRAILLDPSCSGSGTITDRLDHLLPSHSEDNNMNYDSM-RLHKLAVFQKK 425
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPN 309
AL HALSFP VERVVYSTCSI+Q+ENEDV+ SVLP+A S GF+LATPFP
Sbjct: 426 ALAHALSFPKVERVVYSTCSIYQIENEDVVSSVLPLASSLGFKLATPFPQ 475
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/290 (69%), Positives = 241/290 (83%), Gaps = 2/290 (0%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
+GDAEKFLM HK A+ LA LLVR KV+S++ L+ L + KPRYVRVNTLKMDVDS
Sbjct: 134 IGDAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPRYVRVNTLKMDVDS 193
Query: 80 AVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
AV EL K + VQ+D+ VPDLL+LPPG DLH H L+ NG +FLQGKASSMVAAAL P+ GW
Sbjct: 194 AVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPEAGW 253
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSGA+NI+V HGDFL
Sbjct: 254 EVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSGASNIQVFHGDFLG 313
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+PKDP++ +VRAILLDPSCSGSGT +RLDHLLPSH++ + + RL+KL+ FQKK
Sbjct: 314 LNPKDPSFVKVRAILLDPSCSGSGTITDRLDHLLPSHSADNMN--YDSMRLHKLAVFQKK 371
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPN 309
AL HALSFP VERVVYSTCSIHQ+ENEDV+ SVL +A S GF+LATPFP
Sbjct: 372 ALAHALSFPQVERVVYSTCSIHQIENEDVVSSVLALASSLGFKLATPFPQ 421
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514695|ref|XP_003526039.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/298 (70%), Positives = 252/298 (84%), Gaps = 10/298 (3%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTP---------DVPKPRYVRV 70
VGDAEKFLM H+ A++ L QLL++ VK+++ L+AL+Q P DV PRYVRV
Sbjct: 114 VGDAEKFLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPGHCSNSSCADVSVPRYVRV 173
Query: 71 NTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVA 130
NTLK+DVDSA+LEL K + VQKD L+PDLLILPPG DLH HPL+ NG +FLQGKASSM A
Sbjct: 174 NTLKLDVDSALLELQKNYSVQKDHLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAA 233
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
AL+P+PGW+VLDAC+APGNKTVHLAALMK KGKI+ACEL +ER++RLKDTIKLSGA+NI
Sbjct: 234 PALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQRERIKRLKDTIKLSGASNI 293
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 250
+VL+ DFLN +PKDP+YS+V+AILLDPSCSGSGTAA RLDHLLPS A+ ++ D T+ ERL
Sbjct: 294 QVLNDDFLNQNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAANSQD-TDTERL 352
Query: 251 NKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
NKL+ FQ+KAL+HAL FP VER+VYSTCSI+Q+ENEDVIKSVLPIA S GFQLA PFP
Sbjct: 353 NKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFP 410
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| TAIR|locus:2179749 | 567 | AT5G26180 "AT5G26180" [Arabido | 0.851 | 0.506 | 0.674 | 1.9e-99 | |
| ZFIN|ZDB-GENE-040426-2476 | 483 | nsun5 "NOP2/Sun domain family, | 0.566 | 0.395 | 0.448 | 2.9e-48 | |
| UNIPROTKB|Q96P11 | 429 | NSUN5 "Putative methyltransfer | 0.572 | 0.449 | 0.470 | 6.8e-47 | |
| MGI|MGI:2140844 | 465 | Nsun5 "NOL1/NOP2/Sun domain fa | 0.572 | 0.415 | 0.460 | 3.7e-46 | |
| DICTYBASE|DDB_G0267872 | 680 | DDB_G0267872 "NOL1/NOP2/Sun fa | 0.388 | 0.192 | 0.484 | 1.8e-44 | |
| POMBASE|SPAC2C4.06c | 460 | SPAC2C4.06c "tRNA (cytosine-5- | 0.777 | 0.569 | 0.393 | 9.9e-39 | |
| CGD|CAL0003354 | 498 | orf19.2604 [Candida albicans ( | 0.540 | 0.365 | 0.398 | 1.2e-33 | |
| UNIPROTKB|Q5A962 | 498 | CaO19.10135 "Putative uncharac | 0.540 | 0.365 | 0.398 | 1.2e-33 | |
| UNIPROTKB|Q63ZY6 | 315 | NSUN5P2 "Putative methyltransf | 0.572 | 0.612 | 0.405 | 1.4e-30 | |
| UNIPROTKB|G4MPG8 | 557 | MGG_05721 "Uncharacterized pro | 0.353 | 0.213 | 0.4 | 1.4e-26 |
| TAIR|locus:2179749 AT5G26180 "AT5G26180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
Identities = 195/289 (67%), Positives = 231/289 (79%)
Query: 20 VGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 79
+GDAEKFLM HK A+ LA LLVR KV S++ L+ T + KPRYVRVNTLKMDVDS
Sbjct: 188 IGDAEKFLMRHKEALLSGLATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDS 246
Query: 80 AVLELGKQFVVQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139
AV EL K + VQK G DLH H L+ NG +FLQGKASSMVAAAL P+ GW
Sbjct: 247 AVQELEKHYTVQKDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGW 306
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLDACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSGA+NIEV HGDFL
Sbjct: 307 EVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVKRLEHTIKLSGASNIEVCHGDFLG 366
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259
L+PKDP+++++RAILLDPSCSGSGT +RLDHLLPSH+ + + M RL+KL+ FQKK
Sbjct: 367 LNPKDPSFAKIRAILLDPSCSGSGTITDRLDHLLPSHSEDNNMNYDSM-RLHKLAVFQKK 425
Query: 260 ALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFP 308
AL HALSFP VERVVYSTCSI+Q+ENEDV+ SVLP+A S GF+LATPFP
Sbjct: 426 ALAHALSFPKVERVVYSTCSIYQIENEDVVSSVLPLASSLGFKLATPFP 474
|
|
| ZFIN|ZDB-GENE-040426-2476 nsun5 "NOP2/Sun domain family, member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 91/203 (44%), Positives = 121/203 (59%)
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
D H H L G + LQ KAS + A L P G V+DAC+APGNKT HLAA+MK KGK+
Sbjct: 194 DFHDHFLYKAGHIILQDKASCLPAFLLNPPVGSHVIDACAAPGNKTSHLAAIMKNKGKLF 253
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A +L+ +R+ + + +G ++ + DFL +DP++ Y EV+ ILLDPSCSGSG
Sbjct: 254 AFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKVDPQNSEYKEVKYILLDPSCSGSGMVC 313
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
LD L + G RL L+AFQ L HAL FP +ER+VYSTCSIH ENE
Sbjct: 314 -LLDELPETQEDG---------RLQALAAFQLHCLNHALQFPQLERIVYSTCSIHSQENE 363
Query: 287 DVIKSVLPIAMSFGFQLATPFPN 309
+V+ + L + GF+L P+
Sbjct: 364 EVVTACLQ--QNPGFRLVHLLPD 384
|
|
| UNIPROTKB|Q96P11 NSUN5 "Putative methyltransferase NSUN5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 95/202 (47%), Positives = 128/202 (63%)
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 196 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 255
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG +
Sbjct: 256 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS 315
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
+L+ P +G T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENE
Sbjct: 316 RQLEE--PG--AG-TPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENE 367
Query: 287 DVIKSVLPIAMSFGFQLATPFP 308
DV++ L F+LA P
Sbjct: 368 DVVRDALQQNPG-AFRLAPALP 388
|
|
| MGI|MGI:2140844 Nsun5 "NOL1/NOP2/Sun domain family, member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 93/202 (46%), Positives = 129/202 (63%)
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
DLH HPL G + LQ KAS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI
Sbjct: 196 DLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIF 255
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A + + +R+ + + +G + E+ DFL + P D YS+V+ ILLDPSCSGSG +
Sbjct: 256 AFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLS 315
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
+L+ H G P++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENE
Sbjct: 316 RQLEE----HGEG---TPSK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENE 367
Query: 287 DVIKSVLPIAMSFGFQLATPFP 308
DV++ L S F+LA P
Sbjct: 368 DVVQEALQ-HNSGTFRLAPVLP 388
|
|
| DICTYBASE|DDB_G0267872 DDB_G0267872 "NOL1/NOP2/Sun family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 64/132 (48%), Positives = 82/132 (62%)
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
DLH H +++NG + LQ KAS + + L+P PG +D+CSAPGNKT L+A MK GKI
Sbjct: 226 DLHDHKMLLNGQIILQDKASCLPSFILSPPPGSVCIDSCSAPGNKTSLLSAQMKNTGKIF 285
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A E + +R L K S NIE ++ FLNL DP + +V IL DPSCSGSG
Sbjct: 286 AIEKDTKRCGTLIKLTKRSLCKNIETINDSFLNLKHDDPKFKDVEYILCDPSCSGSGIV- 344
Query: 227 ERLDHLLPSHAS 238
RLD+LLP+ S
Sbjct: 345 NRLDYLLPTKYS 356
|
|
| POMBASE|SPAC2C4.06c SPAC2C4.06c "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 113/287 (39%), Positives = 152/287 (52%)
Query: 21 GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80
G ++ ++ HK + +L V+ VKS E+L AL + P V PR++R+NT+K D
Sbjct: 90 GPIKECILRHKTRLNAEFVKLKVKKGVKSHEEL-AL-KNP-VSLPRWLRINTIKSTKDEV 146
Query: 81 VLELGKQFVVQKXXXXXXXXXXXXGCDLHV------HPLIVN-----GCVFLQGKASSMV 129
+ LG V C ++ P++ N G V +Q KAS
Sbjct: 147 LQGLGLD-KVSSIEELGPDKFYIDDCVENLIAIDPSFPIVENSLYKEGKVIIQDKASCFP 205
Query: 130 AAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
AA LA G ++D C+APGNKT HLAA K I A E + +RV+ L+ + +SGA
Sbjct: 206 AAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKRVQTLRKMVGISGA 264
Query: 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE- 246
N+ + H DF DPK Y V ILLDPSCSGSG + R D+LL G+ D TE
Sbjct: 265 NNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS-RQDYLL-----GNEQDVTED 318
Query: 247 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
ERL L +FQ L+HAL FP V YSTCS+H++ENE V+ VL
Sbjct: 319 TERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQVVCEVL 365
|
|
| CGD|CAL0003354 orf19.2604 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 79/198 (39%), Positives = 110/198 (55%)
Query: 117 GCVFLQGKASSMVAAALAPKPG---WKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNK 172
G + +Q +AS + L P +V+DAC+APGNKT H AA + +V A E +
Sbjct: 244 GEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDS 303
Query: 173 ERVRRLKDTI-KLSGAAN---IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
+RV+ LK K +G I+V H DF P+D + +V +++DPSCSGSG
Sbjct: 304 KRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPED--FPDVTGLVIDPSCSGSGIFGRA 361
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 288
L+ SH + + ERLNKL+ FQ ++HALSFP +VVYSTCSIH ENE V
Sbjct: 362 LED---SH-NEEEIENVNTERLNKLAGFQFAIMKHALSFPSARKVVYSTCSIHAQENERV 417
Query: 289 IKSVL--PIAMSFGFQLA 304
+ +L P G++LA
Sbjct: 418 VVDLLSDPEVNRRGWKLA 435
|
|
| UNIPROTKB|Q5A962 CaO19.10135 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 79/198 (39%), Positives = 110/198 (55%)
Query: 117 GCVFLQGKASSMVAAALAPKPG---WKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNK 172
G + +Q +AS + L P +V+DAC+APGNKT H AA + +V A E +
Sbjct: 244 GEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDS 303
Query: 173 ERVRRLKDTI-KLSGAAN---IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
+RV+ LK K +G I+V H DF P+D + +V +++DPSCSGSG
Sbjct: 304 KRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPED--FPDVTGLVIDPSCSGSGIFGRA 361
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 288
L+ SH + + ERLNKL+ FQ ++HALSFP +VVYSTCSIH ENE V
Sbjct: 362 LED---SH-NEEEIENVNTERLNKLAGFQFAIMKHALSFPSARKVVYSTCSIHAQENERV 417
Query: 289 IKSVL--PIAMSFGFQLA 304
+ +L P G++LA
Sbjct: 418 VVDLLSDPEVNRRGWKLA 435
|
|
| UNIPROTKB|Q63ZY6 NSUN5P2 "Putative methyltransferase NSUN5C" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 82/202 (40%), Positives = 115/202 (56%)
Query: 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 166
DLH HPL G + LQ +AS + A L P+ KT HLAAL+K +GKI
Sbjct: 12 DLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLKNQGKIF 71
Query: 167 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 226
A +L+ R+ + + +G + E+ DFL + P DP Y EV +LLDPSCSGSG +
Sbjct: 72 AFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPS 131
Query: 227 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 286
+L+ P +G T P RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENE
Sbjct: 132 RQLEE--PG--AG-TPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENE 183
Query: 287 DVIKSVLPIAMSFGFQLATPFP 308
D+++ L F+LA P
Sbjct: 184 DMVQDALQQNPG-AFRLAPALP 204
|
|
| UNIPROTKB|G4MPG8 MGG_05721 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 54/135 (40%), Positives = 74/135 (54%)
Query: 105 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKP-GWKVLDACSAPGNKTVHLAALMK--- 160
G D+ +G V LQ KAS A L P+P V+DAC+APGNKT H AA+++
Sbjct: 200 GSDITKTEAYKSGAVILQDKASCFPAYLLDPRPEDGDVIDACAAPGNKTTHAAAVLEEYR 259
Query: 161 -------GKGK---IVACELNKERVRRLKDTIKLSGAANIEVLH-G-DFLNLDPKDPAYS 208
KG + A E + R L +K++G+ + V++ G DF+ DP P Y
Sbjct: 260 TAVNVKESKGSRSTVHAFEKDSRRAEILAKMVKIAGSDSFTVVNKGKDFMKADPNSPLYK 319
Query: 209 EVRAILLDPSCSGSG 223
+V A+LLDPSCSGSG
Sbjct: 320 DVAALLLDPSCSGSG 334
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 2e-59 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 3e-39 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 2e-29 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 1e-28 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 3e-27 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 3e-26 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 2e-25 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 4e-21 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 2e-20 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 3e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-06 | |
| smart00650 | 169 | smart00650, rADc, Ribosomal RNA adenine dimethylas | 2e-05 | |
| pfam00398 | 254 | pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla | 2e-05 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 3e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-05 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 1e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-04 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 5e-04 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 5e-04 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 5e-04 | |
| TIGR00479 | 431 | TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf | 0.002 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 0.003 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-59
Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 23/291 (7%)
Query: 9 LHTNLRHP--LWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPR 66
L R L F H + L L ++ A+ P PR
Sbjct: 31 LRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALG------EDEAEAIAAALLRPPPR 84
Query: 67 YVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 125
+RVNTLK DV+ + L + + +K ++ ++L + + P G +++Q +A
Sbjct: 85 SLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEA 144
Query: 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV-ACELNKERVRRLKDTIKL 184
S + A L PKPG +VLD C+APG KT HLA LM+ +G IV A +++ +R++RL++ +K
Sbjct: 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR 204
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 244
G N+ V++ D L P + ILLD CSG+G D P
Sbjct: 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-------RRTP 257
Query: 245 TEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
E + +L+ QK+ L AL PG +VYSTCS+ ENE+V++ L
Sbjct: 258 ---EDIAELAKLQKEILAAALKLLKPG-GVLVYSTCSLTPEENEEVVERFL 304
|
Length = 355 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-39
Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
P +RVNTLK+ V+ + +L ++ + V++ L P+ L++ G ++ L +G +
Sbjct: 175 EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKG-NIAGTDLFKDGLIT 233
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++S +VA AL PK G VLDAC+APG KT H+A L+K GK+VA ++++ +++ +++
Sbjct: 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
K G NIE D + K + IL+D CSG G + D +
Sbjct: 294 NAKRLGLTNIETKALDARKVHEKFAEKFDK--ILVDAPCSGLGVIRRKPD-------IKY 344
Query: 241 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
++E L ++ Q + L + G +VYSTC+I + ENE+VI++ L
Sbjct: 345 NKTKEDIESLQEI---QLEILESVAQYLKKG-GILVYSTCTIEKEENEEVIEAFL 395
|
Length = 444 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q +++ +VA L P+PG +LDAC+APG KT H+A LM +G+I A + + R+++L++
Sbjct: 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296
Query: 182 IKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLD---HLLPSHA 237
+ G +I++L D NL P + ILLD CSG GT D P
Sbjct: 297 AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTP--- 353
Query: 238 SGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVLPI 295
E++ +L+ Q + L PG +VY+TC++H ENE I+ L
Sbjct: 354 ----------EKIQELAPLQAELLESLAPLLKPG-GTLVYATCTLHPAENEAQIEQFL-- 400
Query: 296 AMSFGFQLATPFPN 309
A ++L P
Sbjct: 401 ARHPDWKLEPPKQK 414
|
Length = 434 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-28
Identities = 79/235 (33%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 68 VRVNTLKMDVDSAVLELGKQFVVQKDDLVP-----DLLILPPGCDLHVHPLIVNGCVFLQ 122
+RVNTLK++V+ + L + VV + G P + G + Q
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFEVKESPFSIGST----PEYLFGYYYPQ 56
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182
+S + AL P+ +VLD +APG KT ++ LMK KG IVA E++K R + L I
Sbjct: 57 EASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNI 116
Query: 183 KLSGAANIEVLHGDFLNLDPKDPAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHT 241
G N V++ D K AY + AILLD CSG G R D PS +
Sbjct: 117 NRMGVLNTIVINAD----GRKFGAYLLKFDAILLDAPCSGEGVI--RKD---PSRKRNWS 167
Query: 242 ADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
E + S QK+ + AL GV +VYSTCS+ ENE+VI +L
Sbjct: 168 -----EEDIKYCSLLQKELIDAAIDALKPGGV--LVYSTCSLEVEENEEVIDYIL 215
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-27
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 63 PKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 121
P ++R+N K D + L + + DL PD + L +H P G V +
Sbjct: 163 RPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTV 222
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q ++ VA LAP+ +LDAC+APG KT H+ L + ++VA ++++ R++R+ +
Sbjct: 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYEN 281
Query: 182 IK-LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
+K L E GD + ILLD CS +G D
Sbjct: 282 LKRLGLTIKAETKDGDGRGPSQWAEN-EQFDRILLDAPCSATGVIRRHPD-------IKW 333
Query: 241 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG 300
P ++ L +L + A+ L G +VY+TCS+ EN + IK+ L F
Sbjct: 334 LRKPRDIAELAELQSEILDAIWPLLKTGGT--LVYATCSVLPEENSEQIKAFLQEHPDFP 391
Query: 301 FQLATPFPNGTAEASQFL 318
F+ Q L
Sbjct: 392 FEKTGTPEQVRDGGLQIL 409
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-26
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 62 VPKPRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCV 119
P +R N LK S + L V + L + + P NG V
Sbjct: 7 CSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAV 66
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
+Q +S + A AL P+ +LD C+APG KT H+A LMK +G +VA + NK+R++R+
Sbjct: 67 TVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVY 126
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239
I+ G NI V GD +D K E ILLD CSG+G D
Sbjct: 127 ANIQRLGVFNIIVQEGDARQIDQK-LLGGEFDRILLDAPCSGTGVIRRDPD-------IK 178
Query: 240 HTADPTEMERLNKLSAFQKKALR--HALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
++ +L +L QK+ L+ L PG +VYSTCS+ ENE VIK L
Sbjct: 179 WLRREADIAQLAEL---QKELLKAAWDLVKPG-GVLVYSTCSVLPEENEAVIKYFL 230
|
Length = 277 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 69 RVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH-VHPLIVNGCVFLQGKASS 127
R+N LK + + V + +P+ + D P + G V +Q +
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFL---SKDFSLFEPFLKLGLVSVQNPTQA 240
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL--NK-ERVRRLKDTIKL 184
+ L P+PG VLD C+APG K+ +A LM+ +G+I A + K E++R +
Sbjct: 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-- 298
Query: 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD- 243
G IE + GD + P++ AILLD C+G+G R A+
Sbjct: 299 -GITIIETIEGDARSFSPEEQP----DAILLDAPCTGTGVLGRR-------------AEL 340
Query: 244 --PTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
E+L +L Q + L HA S PG +VY+TCSI ENE I++ L
Sbjct: 341 RWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCSIEPEENELQIEAFL 393
|
Length = 445 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 94/289 (32%), Positives = 128/289 (44%), Gaps = 61/289 (21%)
Query: 49 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ--------------FVVQKDD 94
S++D +A Q P R +RVNTLK+ V L+L F +++DD
Sbjct: 21 SMDDFIAACQRP---LRRSIRVNTLKISVA-DFLQLMAPYGWTLTPIPWCEEGFWIERDD 76
Query: 95 LVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK-VLDACSAPGN 150
LP G H+ +G ++Q +ASSM VAA A + VLD +APG+
Sbjct: 77 EDA----LPLGNTAEHL-----SGLFYIQ-EASSMLPVAALFADDNAPQRVLDMAAAPGS 126
Query: 151 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKD 204
KT +AALM +G IVA E + RV+ L I G +N+ + H G L
Sbjct: 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL------ 180
Query: 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS-GHTADPTEMERLNKLSAFQKKALRH 263
AILLD CSG GT R D + S + +R SAF H
Sbjct: 181 --PETFDAILLDAPCSGEGTV--RKDPDALKNWSPESNLEIAATQRELIESAF------H 230
Query: 264 ALSFPGVERVVYSTCSIHQVENEDVI---KSVLPIAMSFGFQLATPFPN 309
AL G +VYSTC++++ EN+ V K P A+ F L FP
Sbjct: 231 ALKPGGT--LVYSTCTLNREENQAVCLWLKETYPDAVEF-EPLGDLFPG 276
|
Length = 470 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-20
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 58/296 (19%)
Query: 9 LHTNLRHPLWPVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 68
LH HP W V FL +++ +M Q P P +
Sbjct: 128 LHLKYSHPKWLVNYWRSFLPE------------------EAVLRIMEWNQEP---LPTML 166
Query: 69 RVNTLKMDVDSAVLELGKQFVVQKDDLVP------DLLILPPGCDLHVHPLIVNGCVFLQ 122
RVN+L + + + L ++ + VP L++ G +++ +I +G +Q
Sbjct: 167 RVNSLAITREEVIKILAEE----GTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQ 222
Query: 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182
G++S +V + +PG +VLD C+APG KT +A LMK +GKI+A ++++E+++ ++
Sbjct: 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282
Query: 183 KLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242
K ++IE+ D L + IL+D C+ GTA
Sbjct: 283 KRLKLSSIEIKIADAERL--TEYVQDTFDRILVDAPCTSLGTARN--------------- 325
Query: 243 DPTEMERLNK-----LSAFQKKALRHA---LSFPGVERVVYSTCSIHQVENEDVIK 290
P + R+NK LS Q + + A L G+ ++YSTC++ + EN +V+K
Sbjct: 326 HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI--LLYSTCTVTKEENTEVVK 379
|
Length = 431 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-14
Identities = 70/257 (27%), Positives = 103/257 (40%), Gaps = 75/257 (29%)
Query: 69 RVNTLKMDVDS--AVL-ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 125
RVN D+ A+L E G + + PD + L +H P G V +Q A
Sbjct: 175 RVNRRHHSRDAYLALLAEAGIE--AFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAA 232
Query: 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-L 184
+ + A LAP+ G +VLDAC+APG KT H+ L ++VA +++ +R+ R+++ ++ L
Sbjct: 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQA-QVVALDIDAQRLERVRENLQRL 291
Query: 185 SGAANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGTA------------- 225
A V+ GD + P D ILLD CS +G
Sbjct: 292 GLKA--TVIVGDARDPAQWWDGQPFD-------RILLDAPCSATGVIRRHPDIKWLRRPE 342
Query: 226 ---------AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276
+E LD L P G T ++Y+
Sbjct: 343 DIAALAALQSEILDALWPLLKPGGT-------------------------------LLYA 371
Query: 277 TCSIHQVENEDVIKSVL 293
TCSI ENE IK+ L
Sbjct: 372 TCSILPEENEQQIKAFL 388
|
Length = 427 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
+VLD G + LA+ ++ +++ + + A N+EVL GD
Sbjct: 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
L P+ I+ DP R
Sbjct: 59 LPPEADE--SFDVIISDPPLHHLVEDLARF 86
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196
PG +VLD G+ + LA L G ++ +L+ E + ++ KL+ I + GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 197 FLNLDPKDPAY 207
+ +
Sbjct: 60 APDALDLLEGF 70
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ + L KPG KVLD G+ + LA G G++V ++++ + ++ +K G
Sbjct: 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 188 ANIEVLHGDFLNL 200
N+E + GD NL
Sbjct: 101 QNVEFVVGDAENL 113
|
Length = 238 |
| >gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A +PG VL+ G T L K ++ A E++ RL++ K + A
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAK---RVTAIEIDPRLAPRLRE--KFAAAD 59
Query: 189 NIEVLHGDFLNLD-PKDPAY 207
N+ V+HGD L D PK Y
Sbjct: 60 NLTVIHGDALKFDLPKLQPY 79
|
Length = 169 |
| >gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ + VL+ G T LA K ++VA E++ +RL++ KL+
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK---QVVAIEIDPRLAKRLQE--KLALHP 75
Query: 189 NIEVLHGDFLNLD-PKD 204
N+EV+H DFL PKD
Sbjct: 76 NVEVVHQDFLKFSFPKD 92
|
Length = 254 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L +PG + D + G+ T+ A L+ G++ A E N E + ++ ++ G +NI
Sbjct: 13 SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 236
++ GD + A+ + GSG + + +
Sbjct: 72 VIVEGDAPEAPEDLL--PDPDAVFV----GGSGGLLQEILEAVERR 111
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 196
G +VLD + G + A ++V EL+ E + + L+G A + V+ GD
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 197 FLNLDPKDPAYSEVRAILLDP 217
L +L +P
Sbjct: 60 ARELLELPDG--SFDLVLGNP 78
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 125 ASSMVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
A M A L KPG +VL+ S G T A ++ G +V+ E E V +
Sbjct: 58 APHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRN 117
Query: 182 IKLSGAANIEVLHGD 196
++ G N+ V+ GD
Sbjct: 118 LEKLGLENVIVVVGD 132
|
Length = 210 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194
K G KVLD G T LA + ++V ++++E + + K+ K G N+E +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 195 GDFLNLD 201
GD L
Sbjct: 61 GDIEELP 67
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 193
K G K LD G+ T L+ GK+V ++N+ ++ + K G NIE L
Sbjct: 44 GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Query: 194 HGDFLNLDPKDPAY 207
G+ L +D ++
Sbjct: 104 QGNAEELPFEDDSF 117
|
Length = 233 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 113 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELN 171
+I + C F G + ++AA ++LD + GN + L A K KIV E+
Sbjct: 20 IIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGA--GNGALGLLLAQRTEKAKIVGVEIQ 77
Query: 172 KERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
+E + + L+ I+V+ D K ++ I+ +P
Sbjct: 78 EEAAEMAQRNVALNPLEERIQVIEADIKEF-LKALVFASFDLIICNP 123
|
Length = 248 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L P+PG ++ D + G+ T+ A G+++A E ++E + ++ G N+
Sbjct: 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNL 86
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239
EV+ GD P AI + G G E L+ G
Sbjct: 87 EVVEGDAPEALPD---LPSPDAIFI----GGGGNIEEILEAAWERLKPG 128
|
Length = 187 |
| >gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199
V+DA G T+ LA K +V E+ E V + + +L+G AN+E L G
Sbjct: 295 LVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351
Query: 200 LDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 232
+ PK P A +LLDP G AAE L +
Sbjct: 352 VLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTI 383
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKD 180
L +PG KVLD G+ + LA + G++V + + +E++R
Sbjct: 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR---- 97
Query: 181 TIKLSGAANIEVLHGDFLNL 200
L + N+E + GD L
Sbjct: 98 --DLGLSGNVEFVQGDAEAL 115
|
Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 100.0 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 100.0 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.67 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.62 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.59 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.56 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.55 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.51 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.5 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.5 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.49 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.49 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.49 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.49 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.49 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.48 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.47 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.47 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.47 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.43 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.42 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.42 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.42 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.41 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.4 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.39 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.39 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.39 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.38 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.36 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.36 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.35 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.33 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.33 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.32 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.32 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.32 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.31 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.31 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.3 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.29 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.28 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.28 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.28 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.26 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.25 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.25 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.24 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.24 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.24 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.23 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.23 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.22 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.21 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.2 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.2 | |
| PLN02476 | 278 | O-methyltransferase | 99.19 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.19 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.14 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.13 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.11 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.09 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.08 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.08 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 99.06 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.06 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.05 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.05 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.03 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.03 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.02 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.02 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.01 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.01 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.01 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.99 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.99 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.98 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.97 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.97 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.97 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.96 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.95 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.95 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.95 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.93 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.91 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.91 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.91 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.89 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.89 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.88 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.88 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.87 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.86 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.86 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.85 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.85 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.84 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.84 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.84 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.82 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.79 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.79 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.77 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.76 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.75 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.72 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.7 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.7 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.69 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.68 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.68 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.68 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.67 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.67 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.66 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.65 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.63 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.61 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.61 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.61 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.61 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.61 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.6 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.6 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.6 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.59 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.59 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.58 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.58 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.56 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.54 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.54 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.54 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.54 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.53 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.53 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.5 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.49 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.49 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.48 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.45 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.43 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.43 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.43 | |
| PLN02366 | 308 | spermidine synthase | 98.41 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.38 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.37 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.36 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.35 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.3 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.29 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.28 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.25 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.24 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.24 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.22 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.18 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.17 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.16 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.07 | |
| PLN02823 | 336 | spermine synthase | 98.04 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.98 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.97 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.96 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.93 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.92 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.91 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.91 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.9 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.87 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.87 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.87 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.85 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.83 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.75 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.73 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.71 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.71 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.69 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.63 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.55 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.52 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.51 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.49 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.48 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.45 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.44 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.42 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.38 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.34 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.33 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.3 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.09 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.03 | |
| PHA01634 | 156 | hypothetical protein | 97.02 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 96.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.95 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.82 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.81 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 96.8 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.74 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.68 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.68 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.65 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.58 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.57 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 96.55 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.54 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.53 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.5 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.44 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 96.43 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.4 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.38 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.33 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.3 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 96.24 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.16 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.01 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.94 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.91 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.91 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.85 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 95.76 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.72 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.69 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.58 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.42 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.42 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.36 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.27 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.14 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.01 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 94.76 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.68 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.58 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 94.13 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.04 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.71 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.57 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.57 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 93.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 91.97 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.88 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 91.81 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 91.75 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 91.5 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 90.05 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 89.89 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.77 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 89.76 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 89.62 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 89.59 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 89.32 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 89.21 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 89.14 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 88.14 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 88.01 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.11 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 86.95 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 86.91 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.78 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 86.76 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 86.75 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 86.64 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 86.37 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 86.03 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 85.86 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 85.76 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 85.64 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 85.49 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 85.44 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.31 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 85.1 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 85.1 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 84.6 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 84.47 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 84.18 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 84.07 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 83.75 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 83.74 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 82.93 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 82.91 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 82.89 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 82.61 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.39 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 82.29 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 82.18 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 82.03 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 81.91 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 81.69 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 81.54 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 81.46 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 81.44 | |
| PRK13699 | 227 | putative methylase; Provisional | 81.28 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 80.82 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 80.44 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.35 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 80.31 | |
| KOG0919 | 338 | consensus C-5 cytosine-specific DNA methylase [Tra | 80.25 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 80.1 |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=439.12 Aligned_cols=290 Identities=31% Similarity=0.423 Sum_probs=245.1
Q ss_pred HHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCCC
Q 019692 28 MLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGC 106 (337)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~ 106 (337)
..++.|+...+.+ .++....+.++++++ .++|+++|||++|.+.+++.+.|+. ++...+..+.+.++.+....
T Consensus 52 ~~~p~w~~~~~~~---~~~~~~~~~~~~a~~---~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 125 (355)
T COG0144 52 YSHPEWLVEKLPD---ALGEDEAEAIAAALL---RPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASG 125 (355)
T ss_pred ccCcHHHHHHHHH---HcChHHHHHHHHHcC---CCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCC
Confidence 4567777554444 455555889999988 4678999999999999999999987 66555555556788888777
Q ss_pred CCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHh
Q 019692 107 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 107 ~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~-V~avD~~~~~l~~l~~~~~~~ 185 (337)
.+..++.|.+|++++||.+||+++.+|+++||++|||+||||||||+|+|+++.+.+. |+|+|+++.+++.+++|++++
T Consensus 126 ~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 126 PIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred CcccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999999999987554 599999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 186 g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
|+.|+.+++.|+..++.......+||.||+||||||+|++||+||.+|. ++++++.+++.+|++||.+|+
T Consensus 206 G~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~----------~~~~~i~~l~~lQ~~iL~~a~ 275 (355)
T COG0144 206 GVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWR----------RTPEDIAELAKLQKEILAAAL 275 (355)
T ss_pred CCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCcccccc----------CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776544322369999999999999999999998763 379999999999999999999
Q ss_pred CCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcc--h--hhcccceeeeeecCCCCCCCCCC
Q 019692 266 SFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAE--A--SQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
+++++ |.|||||||++++|||+||++||+ ++++|+++.....|... + .... ..++++||.|.|.|+|+
T Consensus 276 ~~lk~GG~LVYSTCS~~~eENE~vV~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~p~~~~~dGFFi 348 (355)
T COG0144 276 KLLKPGGVLVYSTCSLTPEENEEVVERFLE--RHPDFELEPVRLPWGPLFEGLGSELG--KTRRLYPHVHGTDGFFI 348 (355)
T ss_pred HhcCCCCEEEEEccCCchhcCHHHHHHHHH--hCCCceeecccccccccccccccccC--CeEEECCCCCCCCCeEE
Confidence 99986 999999999999999999999995 57788887654445431 1 1122 23799999998899995
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=447.03 Aligned_cols=289 Identities=26% Similarity=0.301 Sum_probs=243.9
Q ss_pred HcHHHHHHHHHHHHHHcCc-ccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC-
Q 019692 29 LHKGAIQLALAQLLVRNKV-KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG- 105 (337)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~-~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~- 105 (337)
.+|.|+. .+|...+|. +++++|++++++ ++|.++|||++|++.+++.+.|++ ++.+++.+|+++++.+...
T Consensus 3 ~lP~~fv---~~~~~~lg~~ee~~~~l~a~~~---~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~ 76 (470)
T PRK11933 3 YLPDAFL---TQMREAMPSHLSMDDFIAACQR---PLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDD 76 (470)
T ss_pred cChHHHH---HHHHHHhCCcHHHHHHHHHcCC---CCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCc
Confidence 3566664 466666776 578999999984 779999999999999999998876 7889999999999988642
Q ss_pred ---CCCCCchhhhcCeEEEechhhHHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 106 ---CDLHVHPLIVNGCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 106 ---~~~~~~~~~~~G~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
..+..++.|..|.+++||++||+++.++ ++++|++|||+|||||+||+++|+++++.|.|+|+|+++.|++.+++
T Consensus 77 ~~~~~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~ 156 (470)
T PRK11933 77 EDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA 156 (470)
T ss_pred cccCCcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 2478899999999999999999999999 88999999999999999999999999988999999999999999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 181 ~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
|++++|+.||.+++.|+..+....+ ..||+|++||||||+|+++|+|+.++ .|+++++.+++.+|++|
T Consensus 157 nl~r~G~~nv~v~~~D~~~~~~~~~--~~fD~ILvDaPCSG~G~~rk~p~~~~----------~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 157 NISRCGVSNVALTHFDGRVFGAALP--ETFDAILLDAPCSGEGTVRKDPDALK----------NWSPESNLEIAATQREL 224 (470)
T ss_pred HHHHcCCCeEEEEeCchhhhhhhch--hhcCeEEEcCCCCCCcccccCHHHhh----------hCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654332 46999999999999999999998754 25899999999999999
Q ss_pred HHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCC-cEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 261 LRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 261 L~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
|++|++++++ |+|||||||++++|||+||++||+ ++++ +++.+.-..|..........-++||+||.+++.|+|+
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 301 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE--TYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFV 301 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH--HCCCcEEeccccccccccccccCCCCeEEECCCCCCCcceee
Confidence 9999999887 999999999999999999999996 3555 3343221123211100011123799999999999996
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-56 Score=410.68 Aligned_cols=269 Identities=33% Similarity=0.502 Sum_probs=227.4
Q ss_pred HHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCe--EEeCCCCCCCCchhhhcCeEEEechhhHHH
Q 019692 53 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMV 129 (337)
Q Consensus 53 ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~ 129 (337)
+|++++ .++|.|+|||++|++.+++.+.|++ ++.+++.++.++. +.......+..++.|++|++++||.+|+++
T Consensus 1 il~~~n---~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~ 77 (283)
T PF01189_consen 1 ILEANN---CPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLV 77 (283)
T ss_dssp HHHHCT---S--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHH
T ss_pred CccccC---CCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccc
Confidence 456666 4789999999999999999999987 8889999988988 444555678899999999999999999999
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
+.+|++++|+.|||+||||||||+++++++.+.|.|+|+|++..++..++++++++|+.+|.++..|+....+... ...
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~-~~~ 156 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP-ESK 156 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-TTT
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-ccc
Confidence 9999999999999999999999999999999899999999999999999999999999999999899887643221 135
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC----CC-cEEEEEcCCCCccc
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP----GV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~----~~-G~lvYsTCS~~~~E 284 (337)
||.|++||||||+|+++++|+.+|. ++++++..++.+|++||++|++++ ++ |+|||||||++++|
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWR----------RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHH----------E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred cchhhcCCCccchhhhhhccchhhc----------ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 9999999999999999999998652 267899999999999999999999 86 99999999999999
Q ss_pred CHHHHHHHhchhcCCCcEEecCCCCCCcchhhc--ccceeeeeecCCCCCCCCCC
Q 019692 285 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF--LKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~p~~~~~~~~~~ 337 (337)
||+||+.||+ ++++|++++....+...+... .....+|++||.|.++|+|+
T Consensus 227 NE~vV~~fl~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFi 279 (283)
T PF01189_consen 227 NEEVVEKFLK--RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFI 279 (283)
T ss_dssp THHHHHHHHH--HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEE
T ss_pred HHHHHHHHHH--hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEE
Confidence 9999999996 477899876433333332210 11223799999999999995
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=408.88 Aligned_cols=308 Identities=23% Similarity=0.317 Sum_probs=254.9
Q ss_pred hhhccccCCCCCCCc-hHHHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHc
Q 019692 7 IGLHTNLRHPLWPVG-DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG 85 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~ 85 (337)
..++|.|++..++.. +..+.-..+|.|+ ..+|...+|.+..++++++++ .++|+++|||++|++.+++.+.|+
T Consensus 110 ~fVNaVLr~~~r~~~~~~l~~~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~RvN~~k~~~~~~~~~l~ 183 (431)
T PRK14903 110 KLVNAVLRRLRTVPEPKELHLKYSHPKWL---VNYWRSFLPEEAVLRIMEWNQ---EPLPTMLRVNSLAITREEVIKILA 183 (431)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcCcHHH---HHHHHHHcCHHHHHHHHHHhc---CCCCeeEEeeCCcCCHHHHHHHHH
Confidence 345666666554322 1122345678877 558888889888999999988 477999999999999999999986
Q ss_pred c-CCceeecCCCCCeEEeCC-CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCC
Q 019692 86 K-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 163 (337)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g 163 (337)
+ ++.+++++++|+++.+.. ...+..++.|++|.+++||.+|++++.++++++|++|||+|||||+||++++.++++.+
T Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g 263 (431)
T PRK14903 184 EEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQG 263 (431)
T ss_pred HCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCC
Confidence 5 888999999999998865 34578899999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCC
Q 019692 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD 243 (337)
Q Consensus 164 ~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~ 243 (337)
+|+|+|+++.+++.+++|++++|+.+|+++++|+..++... .++||.|++||||||+|+++++||.+|.
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~--~~~fD~Vl~DaPCsg~G~~~~~p~~~~~--------- 332 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV--QDTFDRILVDAPCTSLGTARNHPEVLRR--------- 332 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh--hccCCEEEECCCCCCCccccCChHHHHh---------
Confidence 99999999999999999999999988999999998765322 2579999999999999999999997652
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCC---CCCCcchhhccc
Q 019692 244 PTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF---PNGTAEASQFLK 319 (337)
Q Consensus 244 ~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 319 (337)
++++++..++.+|+++|.+|++++++ |.|||||||++++|||+||++||+ ++++|++...- ..+...+. . .
T Consensus 333 -~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~--~~~~~~~~~~~~~~~~~~~~~~-~-~ 407 (431)
T PRK14903 333 -VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY--EQKDAEVIDIRDKLEEFEVEGI-W-D 407 (431)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH--hCCCcEEecccccccccccccc-c-C
Confidence 37889999999999999999999886 899999999999999999999995 47788875431 11111111 0 0
Q ss_pred ceeeeeecCCCCCCCCCC
Q 019692 320 ALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 320 ~~~~~f~p~~~~~~~~~~ 337 (337)
....++.|+. .+.|+|+
T Consensus 408 ~~~~~~~P~~-~~dGFf~ 424 (431)
T PRK14903 408 GYGFLMLPDE-TLTPFYV 424 (431)
T ss_pred CCcEEECcCC-CCCcEEE
Confidence 1125899986 6789985
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=405.27 Aligned_cols=278 Identities=27% Similarity=0.391 Sum_probs=245.2
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
...+|.|+ ..+|...+|.+.+++++++++ .++|+++|||++|++.+++.+.|++ |+.+++.+++|+++.+...
T Consensus 146 ~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 219 (434)
T PRK14901 146 LHSFPDWL---VKLWLEWLGLEEAEQLCKWFN---QPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGN 219 (434)
T ss_pred HhCCcHHH---HHHHHHHhCHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCC
Confidence 35677777 557788888888899999998 4789999999999999999999876 8899999999999999753
Q ss_pred -CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 106 -CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 106 -~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
..+..++.|++|++++||.+|++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+++|+++
T Consensus 220 ~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 220 PGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 263 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 263 (337)
+|+.+|+++++|+..+..... ..++||.|++||||||+|+++++||.+|. ++++++..++.+|.++|.+
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~ 369 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWR----------QTPEKIQELAPLQAELLES 369 (434)
T ss_pred cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhh----------CCHHHHHHHHHHHHHHHHH
Confidence 999999999999987752110 12579999999999999999999998663 2789999999999999999
Q ss_pred HhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 264 ALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 264 A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
|++++++ |+|||||||++++|||++|.+||+ ++++|++... . .+++||.|.++|+|+
T Consensus 370 a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~--~~~~~~~~~~-------------~--~~~~P~~~~~dGfF~ 427 (434)
T PRK14901 370 LAPLLKPGGTLVYATCTLHPAENEAQIEQFLA--RHPDWKLEPP-------------K--QKIWPHRQDGDGFFM 427 (434)
T ss_pred HHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH--hCCCcEecCC-------------C--CccCCCCCCCCcEEE
Confidence 9999887 999999999999999999999995 4778886531 0 128899999999995
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=394.19 Aligned_cols=304 Identities=24% Similarity=0.311 Sum_probs=245.7
Q ss_pred hhhccccCCCCCCCch----HH--HHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHH
Q 019692 7 IGLHTNLRHPLWPVGD----AE--KFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~ 80 (337)
..++|+|++..++..+ .+ .....+|.|+.+.+... ++ ...+++++++++ ++|+|+|||++|.+.+++
T Consensus 108 ~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~---~~-~~~~~~l~~~~~---~~~~~~Rvn~~k~~~~~~ 180 (426)
T TIGR00563 108 GLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKA---YP-GQWQSICEANNQ---RPPMWLRINRTKHSRDEW 180 (426)
T ss_pred hhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHH---hH-HHHHHHHHHhCC---CCCeEEEEcCCcCCHHHH
Confidence 4567877776665322 11 12346677775544333 32 356789999884 779999999999999999
Q ss_pred HHHHcc-CCceeecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc
Q 019692 81 VLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159 (337)
Q Consensus 81 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~ 159 (337)
.+.|++ |+.+.+++++|+++.+.....+..++.|++|++++||.+|++++..+++++|++|||+|||||++|+++++.+
T Consensus 181 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~ 260 (426)
T TIGR00563 181 LALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA 260 (426)
T ss_pred HHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc
Confidence 999876 7888999999999998765568889999999999999999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCC
Q 019692 160 KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS 238 (337)
Q Consensus 160 ~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~ 238 (337)
+ .++|+|+|+++.+++.+++|++++|+.. +++..+|........ ...+||+|++||||||+|+++++|+..|.
T Consensus 261 ~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-~~~~fD~VllDaPcSg~G~~~~~p~~~~~---- 334 (426)
T TIGR00563 261 P-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-ENEQFDRILLDAPCSATGVIRRHPDIKWL---- 334 (426)
T ss_pred C-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-cccccCEEEEcCCCCCCcccccCcchhhc----
Confidence 5 6899999999999999999999999872 344667765443211 12579999999999999999999998653
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhc
Q 019692 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 317 (337)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (337)
++++++.+++.+|.++|.+|.+++++ |.|||||||++++|||++|++||+ .+++|++... ..... .
T Consensus 335 ------~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~---~~~~~--~ 401 (426)
T TIGR00563 335 ------RKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ--EHPDFPFEKT---GTPEQ--V 401 (426)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH--hCCCCeeccC---CCccc--c
Confidence 27899999999999999999998886 999999999999999999999995 4667765431 00010 0
Q ss_pred ccceeeeeecCCCCCCCCCC
Q 019692 318 LKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 318 ~~~~~~~f~p~~~~~~~~~~ 337 (337)
..-.+++.|+.+.+.|+|+
T Consensus 402 -~~~~~~~~P~~~~~dGff~ 420 (426)
T TIGR00563 402 -RDGGLQILPHAEEGDGFFY 420 (426)
T ss_pred -CCCcEEECCCCCCCCCeEE
Confidence 1113799999999999996
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=370.28 Aligned_cols=254 Identities=28% Similarity=0.343 Sum_probs=213.5
Q ss_pred EEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCC-CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeec
Q 019692 68 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 145 (337)
Q Consensus 68 ~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ 145 (337)
+|||++|++.+++.+.|++ ++.+++.. .|+.+.+.. ...+..++.|++|++++||.+|++++.++++++|++|||+|
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ 79 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA 79 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence 5999999999999999976 77776654 466666653 33588999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCcccc
Q 019692 146 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~ 225 (337)
||||++|+++++++++.+.|+|+|+++.+++.+++|++++|+.+|.+++.|+..+... ...||+|++||||||+|++
T Consensus 80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---~~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---VPKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---ccCCCEEEEcCCCCCCccc
Confidence 9999999999999987889999999999999999999999998999999998776433 2469999999999999999
Q ss_pred CcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 226 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+++|+.+|. ++++++..++.+|.++|++|++++++ |.|||||||++++|||+||++||+ .++++.+.
T Consensus 157 ~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~--~~~~~~~~ 224 (264)
T TIGR00446 157 RKDPSRKKN----------WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE--KRPDVVEE 224 (264)
T ss_pred ccChhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH--hCCCcEEe
Confidence 999987552 37899999999999999999999886 999999999999999999999995 35667654
Q ss_pred cCCCC--CCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 305 TPFPN--GTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 305 ~~~~~--~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
...+. |..........-++|+.||.|+|+|+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 259 (264)
T TIGR00446 225 LPKGDEFFGANKGKEEVKGALRVFPQIYDCEGFFV 259 (264)
T ss_pred ccCCcccccccccccccCCeEEECCCCCCCCcEEE
Confidence 22111 1111101011224799999999999996
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=375.74 Aligned_cols=271 Identities=27% Similarity=0.384 Sum_probs=228.8
Q ss_pred HHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHc-cCCceee-cCCCCCeEEe-CCCCCCCCchhhhcCeEEEechhhHH
Q 019692 52 DLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG-KQFVVQK-DDLVPDLLIL-PPGCDLHVHPLIVNGCVFLQGKASSM 128 (337)
Q Consensus 52 ~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~ss~l 128 (337)
++++.+..+..+.|+++|.||+|.-..+....|. .++...+ ..|..-++.+ .+...+..++.|..|++.+|+.+|.+
T Consensus 153 ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~L 232 (460)
T KOG1122|consen 153 EVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFL 232 (460)
T ss_pred HHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCcccc
Confidence 3344444444688999999999987766666654 4655433 3466556654 44567889999999999999999999
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++.+|+|+||++||||||+|||||+++|.+|.+.|.|+|.|.+..+++.++.|+.++|+.|..+++.|...++.... ..
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~-~~ 311 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF-PG 311 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999988764332 13
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~ 287 (337)
+||+||+|+||||+|++.|.+...+. .+.+++.+++.+|+++|.+|..++++ |.|||||||+.++|||+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~----------k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTN----------KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ccceeeecCCCCCCcccccccccccc----------hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 79999999999999999887665432 26899999999999999999999986 89999999999999999
Q ss_pred HHHHHhchhcCCCcEEecCCCCCCcch--------hhcccceeeeeecCCCCCCCCCC
Q 019692 288 VIKSVLPIAMSFGFQLATPFPNGTAEA--------SQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 288 vv~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
||+++|. +++.+++++.-+.|+..| +..+.. -||+||.|+-+|+|+
T Consensus 382 vV~yaL~--K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~--~r~yPh~hnmdgffv 435 (460)
T KOG1122|consen 382 VVDYALK--KRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLT--RRFYPHVHNMDGFFV 435 (460)
T ss_pred HHHHHHH--hCCceEeccccccCCCCCcccCcccCcchhhe--eeecCcccCCchHHH
Confidence 9999995 578899998888888877 333222 699999999999985
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=381.49 Aligned_cols=290 Identities=28% Similarity=0.418 Sum_probs=248.5
Q ss_pred HHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCC
Q 019692 26 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP 104 (337)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~ 104 (337)
....+|.|+. .+|...+|.+.+++++++++ .++|+|+|||++|.+.+++.+.|++ ++.++++++.|+++.++.
T Consensus 145 ~~~~~P~w~~---~~~~~~~g~~~~~~~l~~~~---~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 218 (444)
T PRK14902 145 IKYSHPVWLV---KRWIDQYGEEKAEKILESLN---EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK 218 (444)
T ss_pred HHhCChHHHH---HHHHHHhCHHHHHHHHHHcC---CCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC
Confidence 3456777774 46667778888999999988 4779999999999999999988876 788999999999999986
Q ss_pred CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 105 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 105 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
..+..++.|++|.+++||.+|++++.++++++|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.+++|+++
T Consensus 219 -~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 219 -GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred -CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
+|+.+|+++++|+.++..... ++||+|++||||||+|+++++|+..|. ++++++..++.+|.++|.+|
T Consensus 298 ~g~~~v~~~~~D~~~~~~~~~--~~fD~Vl~D~Pcsg~G~~~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a 365 (444)
T PRK14902 298 LGLTNIETKALDARKVHEKFA--EKFDKILVDAPCSGLGVIRRKPDIKYN----------KTKEDIESLQEIQLEILESV 365 (444)
T ss_pred cCCCeEEEEeCCcccccchhc--ccCCEEEEcCCCCCCeeeccCcchhhc----------CCHHHHHHHHHHHHHHHHHH
Confidence 999889999999987643322 579999999999999999999987653 26889999999999999999
Q ss_pred hCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchh-hcccceeeeeecCCCCCCCCCC
Q 019692 265 LSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEAS-QFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 265 ~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
.+++++ |.|||||||++++|||.+|.++++ .+++|++++....+..... .. ..-++|+.||.|.+.|+|+
T Consensus 366 ~~~LkpGG~lvystcs~~~~Ene~vv~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~P~~~~~dGfF~ 437 (444)
T PRK14902 366 AQYLKKGGILVYSTCTIEKEENEEVIEAFLE--EHPEFELVPLQHEKPDELVYEV-KDGYLQILPNDYGTDGFFI 437 (444)
T ss_pred HHHcCCCCEEEEEcCCCChhhhHHHHHHHHH--hCCCcEEecccccccccccccc-cCCeEEECCCCCCCCCeEE
Confidence 998886 899999999999999999999995 3567888764333322100 01 1123799999999999996
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=375.60 Aligned_cols=299 Identities=24% Similarity=0.282 Sum_probs=246.5
Q ss_pred hhccccCCCCCCCchH-------HHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHH
Q 019692 8 GLHTNLRHPLWPVGDA-------EKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA 80 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~ 80 (337)
.++|.|++..++...+ ......+|.|+...+ ...++ +.+++++++++ .++|+|+|||++|++.+++
T Consensus 114 fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~---~~~~~-~~~~~~~~~~~---~~~~~~~Rvn~~k~~~~~~ 186 (427)
T PRK10901 114 LVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRL---KKAYP-EQWQAILAANN---QRPPMWLRVNRRHHSRDAY 186 (427)
T ss_pred hHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHH---HHHhH-HHHHHHHHHcC---CCCCeEEEEcCCCCCHHHH
Confidence 4566666655432221 112356777775544 44443 45788999988 4779999999999999999
Q ss_pred HHHHcc-CCceeecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc
Q 019692 81 VLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159 (337)
Q Consensus 81 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~ 159 (337)
.+.|++ ++.+++++++|+++.++....+..++.|++|.+++||.+|++++.++++++|++|||+|||+|++|+++++.+
T Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~ 266 (427)
T PRK10901 187 LALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA 266 (427)
T ss_pred HHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc
Confidence 999876 7889999999999999765568889999999999999999999999999999999999999999999999987
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCC
Q 019692 160 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 239 (337)
Q Consensus 160 ~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~ 239 (337)
.+ ++|+|+|+++.+++.+++|++++|+. ++++++|+.+...... ..+||.|++||||||+|+++++|+..|.
T Consensus 267 ~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~-~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~----- 338 (427)
T PRK10901 267 PQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWD-GQPFDRILLDAPCSATGVIRRHPDIKWL----- 338 (427)
T ss_pred CC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcc-cCCCCEEEECCCCCcccccccCcccccc-----
Confidence 44 79999999999999999999999986 7899999987543211 2579999999999999999999997653
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcc
Q 019692 240 HTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFL 318 (337)
Q Consensus 240 ~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (337)
.+++++.+++.+|.++|.+|.+++++ |.+||||||++++|||++|..+++ ++++|++.+... . ..
T Consensus 339 -----~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~~~-~------~~ 404 (427)
T PRK10901 339 -----RRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA--RHPDAELLDTGT-P------QQ 404 (427)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH--hCCCCEEecCCC-C------CC
Confidence 26889999999999999999999886 899999999999999999999995 467888765311 1 01
Q ss_pred cceeeeeecCCCCCCCCCC
Q 019692 319 KALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 319 ~~~~~~f~p~~~~~~~~~~ 337 (337)
.. +++.|+.|.++|+|+
T Consensus 405 ~~--~~~~P~~~~~dGff~ 421 (427)
T PRK10901 405 PG--RQLLPGEEDGDGFFY 421 (427)
T ss_pred Cc--eEECCCCCCCCCeEE
Confidence 12 699999999999995
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=366.05 Aligned_cols=286 Identities=26% Similarity=0.360 Sum_probs=234.5
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
...+|.|+ ..+|...+|.+.+++++++++ .++|+++|||+++.+.+++.+.|.. ++.+.+.++ + .+.+...
T Consensus 148 ~~s~P~wl---~~~~~~~~g~~~~~~~~~~~~---~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~ 219 (445)
T PRK14904 148 LYSHPEWL---LERWIARYGEERTEAMLSYNN---QAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD 219 (445)
T ss_pred HhCCCHHH---HHHHHHHhChHHHHHHHHHhC---CCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc
Confidence 35678887 457778888888899999988 4679999999999999999998865 777766654 4 3444422
Q ss_pred CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 106 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
.....+.|..|.+++||+++++++.++++.+|++|||+|||+|++|.++++.+++.++|+|+|+++.+++.++++++++
T Consensus 220 -~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 220 -FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred -ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 1222379999999999999999999999999999999999999999999998877789999999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 186 g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
|+.+|+++++|+..+.+ ...||+|++||||||+|+++|+||..|. ++++++..++..|.++|.+|.
T Consensus 299 g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~ 364 (445)
T PRK14904 299 GITIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWK----------LTPEKLAELVGLQAELLDHAA 364 (445)
T ss_pred CCCeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhc----------CCHHHHHHHHHHHHHHHHHHH
Confidence 99899999999987652 2479999999999999999999998653 268999999999999999999
Q ss_pred CCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh-cccceeeeeecCCC-CCCCCCC
Q 019692 266 SFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ-FLKALSIYFEPIQW-KTKKAFL 337 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~p~~~-~~~~~~~ 337 (337)
+++++ |.|||+|||++++|||+||++||+ .+++|+.......+...-.. ....-..++.|+.+ .++|+|+
T Consensus 365 ~~lkpgG~lvystcs~~~~Ene~~v~~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~ 437 (445)
T PRK14904 365 SLLKPGGVLVYATCSIEPEENELQIEAFLQ--RHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFA 437 (445)
T ss_pred HhcCCCcEEEEEeCCCChhhHHHHHHHHHH--hCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEE
Confidence 99886 999999999999999999999996 46677764421111110000 00111268999988 7899995
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=309.96 Aligned_cols=303 Identities=37% Similarity=0.554 Sum_probs=248.9
Q ss_pred chHHHHHHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-C---------Cce
Q 019692 21 GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-Q---------FVV 90 (337)
Q Consensus 21 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~---------~~~ 90 (337)
.++.....+++..+.....+-..+.++.+.+++.-.. . .+.|+|+|+||++.+.++.+..|.. . -.+
T Consensus 90 ~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~t~--~-~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~ 166 (413)
T KOG2360|consen 90 RELKVIRLRLILRLKIETVMLKKKRKVKSLRELKLTM--K-IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEF 166 (413)
T ss_pred chhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhccC--C-CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcce
Confidence 3555555666666666555555556666666665542 2 5889999999999999998887754 1 235
Q ss_pred eecCCCCCeEEeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeC
Q 019692 91 QKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~ 170 (337)
.-|++.++.+.+++...+..+++|++|.+++||.+|+++++.|++.+|++|+|+||+||.||.|+|..+.+.++|+|+|.
T Consensus 167 ~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~ 246 (413)
T KOG2360|consen 167 YVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFER 246 (413)
T ss_pred eccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhh
Confidence 56888899999987777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHH
Q 019692 171 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 250 (337)
Q Consensus 171 ~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~ 250 (337)
+..+.+.++..+...|+++++.+.+|+... ..+..+..+..||+||+|||+|+..|.-...- .....++++
T Consensus 247 d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~--------~e~~~~~rL 317 (413)
T KOG2360|consen 247 DAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPG--------AETESPERL 317 (413)
T ss_pred hhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccC--------CCcccHHHH
Confidence 999999999999999999999999999987 55555778899999999999999865322110 112368999
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchhcCCC-cEEec--CCCCCCcchhhcc--cceeeee
Q 019692 251 NKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLAT--PFPNGTAEASQFL--KALSIYF 325 (337)
Q Consensus 251 ~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~--~~~~~~f 325 (337)
..|+.+|..++.+|+.+++..++||||||++.+|||.||+++|.. ++. +.+.+ ..|.|.++|..-. -..++|=
T Consensus 318 ~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~--~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~ 395 (413)
T KOG2360|consen 318 ENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ--NPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRA 395 (413)
T ss_pred HHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh--ChhHhhhchhhcchhhhhcCCccccccccceec
Confidence 999999999999999998889999999999999999999999953 344 44444 7899999885321 1245899
Q ss_pred ecCCCCCCCCCC
Q 019692 326 EPIQWKTKKAFL 337 (337)
Q Consensus 326 ~p~~~~~~~~~~ 337 (337)
.|..+-|.|+|+
T Consensus 396 ~p~~~~~~gffv 407 (413)
T KOG2360|consen 396 SPKSTLTIGFFV 407 (413)
T ss_pred ccCCCCcceEEE
Confidence 999999999995
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=279.68 Aligned_cols=237 Identities=28% Similarity=0.360 Sum_probs=188.4
Q ss_pred cccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc------------C--Cc-eeecCCCCCeEEeCCCC-----
Q 019692 47 VKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK------------Q--FV-VQKDDLVPDLLILPPGC----- 106 (337)
Q Consensus 47 ~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~------------~--~~-~~~~~~~~~~~~~~~~~----- 106 (337)
..+.+++++.++ .+.|..+|+.......+++...+++ + ++ ....+|.|+.+.++...
T Consensus 39 ~~e~~~~~~~ir---~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~ 115 (375)
T KOG2198|consen 39 EDEFGDFWETIR---KPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEI 115 (375)
T ss_pred hHHHHHHHHHHH---hccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCccccc
Confidence 466788888887 4778899988776666665544433 2 21 34567778877765431
Q ss_pred ----CCCCc-----hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHH
Q 019692 107 ----DLHVH-----PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKER 174 (337)
Q Consensus 107 ----~~~~~-----~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~ 174 (337)
.+.+. ....-|.++.||.+|++++.+|+++||++||||||+||+||+++.+.+.. .|.|+|.|.+..|
T Consensus 116 r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R 195 (375)
T KOG2198|consen 116 RKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKR 195 (375)
T ss_pred ccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHH
Confidence 11122 23356889999999999999999999999999999999999999887642 3699999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHH
Q 019692 175 VRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEME 248 (337)
Q Consensus 175 l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~ 248 (337)
+..+++.+++....++.+.+.|+..++... ..+..||.||||+||||.|++++.+++... .|+.+
T Consensus 196 ~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~---------~w~~~ 266 (375)
T KOG2198|consen 196 LNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKE---------GWKTQ 266 (375)
T ss_pred HHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhh---------hhhhh
Confidence 999999998887778888888887766441 234689999999999999999998886321 13455
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 249 RLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 249 ~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
+-..|..+|.+||.++++++++ |.|||||||++|.|||+||+.+|+.
T Consensus 267 ~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~ 314 (375)
T KOG2198|consen 267 RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQK 314 (375)
T ss_pred hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHH
Confidence 5568999999999999999987 9999999999999999999999964
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=151.03 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=116.5
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
...+++|.|..|.....++.... +|.+|||+|||+|+.+++++. .+..+|+++|+|+.+++.+++|++.+|++
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 45779999999988887776653 588999999999998876553 45569999999999999999999999985
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 189 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
+++++++|+.++.... ....+||.|++|||+... +.+.+.....-...++..|+++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-----------------------~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-----------------------NKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-----------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 6999999987754221 012479999999996431 1223334444567888889998
Q ss_pred CCC-cEEEEEcCCCCccc--CHHHHHHHh
Q 019692 268 PGV-ERVVYSTCSIHQVE--NEDVIKSVL 293 (337)
Q Consensus 268 ~~~-G~lvYsTCS~~~~E--Ne~vv~~~l 293 (337)
+++ |.++++|||-+-.+ =.++|.+..
T Consensus 329 Lk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 329 LNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred cCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 886 89999999955543 344444443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-16 Score=147.61 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=121.5
Q ss_pred hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--c
Q 019692 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--N 189 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~ 189 (337)
...++|.|..|..+...+...+. |.+|||++|.||+.|++.|. ++..+|++||+|...++.+++|++.+|+. .
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 46689999999999998888764 99999999999999998766 46669999999999999999999999985 3
Q ss_pred EEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 190 IEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+.++++|+.++..... ...+||+|++||| .+.++ ++...+..+-..+++..+++++
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-----sF~r~------------------k~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPP-----SFARS------------------KKQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCc-----ccccC------------------cccchhHHHHHHHHHHHHHHHc
Confidence 8999999887654432 1248999999999 34332 2233567777889999999998
Q ss_pred CC-cEEEEEcCCCCcccCH
Q 019692 269 GV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe 286 (337)
++ |.++.||||-+-...+
T Consensus 327 ~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 327 APGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred CCCCEEEEEecCCccCHHH
Confidence 87 9999999998887763
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-15 Score=143.22 Aligned_cols=130 Identities=24% Similarity=0.367 Sum_probs=102.6
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+++..++++|||++||.|++|+++|.. ..+|+|+|+++++++.|++|++.+|+.|+++..+|++++.........
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 44567778899999999999999999965 479999999999999999999999999999999999988766432347
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv 289 (337)
+|.|++|||.+|.+ .++++...++ ++.+|||++| |..-.
T Consensus 363 ~d~VvvDPPR~G~~----------------------------------~~~lk~l~~~-~p~~IvYVSC------NP~Tl 401 (432)
T COG2265 363 PDVVVVDPPRAGAD----------------------------------REVLKQLAKL-KPKRIVYVSC------NPATL 401 (432)
T ss_pred CCEEEECCCCCCCC----------------------------------HHHHHHHHhc-CCCcEEEEeC------CHHHH
Confidence 89999999999875 2455555555 4479999999 55555
Q ss_pred HHHhchhcCCCcEE
Q 019692 290 KSVLPIAMSFGFQL 303 (337)
Q Consensus 290 ~~~l~~~~~~~~~~ 303 (337)
.+-+..-.+.++++
T Consensus 402 aRDl~~L~~~gy~i 415 (432)
T COG2265 402 ARDLAILASTGYEI 415 (432)
T ss_pred HHHHHHHHhCCeEE
Confidence 55554333445444
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=125.34 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=119.1
Q ss_pred hhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EE
Q 019692 113 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IE 191 (337)
Q Consensus 113 ~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~ 191 (337)
.++.+.-++-.+.+.+++..+++.||++|+|+|.|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.+ |+
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~ 149 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT 149 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence 36667667777778888889999999999999999999999999999999999999999999999999999999977 99
Q ss_pred EEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-
Q 019692 192 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV- 270 (337)
Q Consensus 192 ~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~- 270 (337)
+..+|+.+.... ..||+|++|.| .| -+.|+++.+.+++
T Consensus 150 ~~~~Dv~~~~~~----~~vDav~LDmp---------~P----------------------------W~~le~~~~~Lkpg 188 (256)
T COG2519 150 LKLGDVREGIDE----EDVDAVFLDLP---------DP----------------------------WNVLEHVSDALKPG 188 (256)
T ss_pred EEeccccccccc----cccCEEEEcCC---------Ch----------------------------HHHHHHHHHHhCCC
Confidence 999999876543 37999999999 22 2679999998886
Q ss_pred c-EEEEEcCCCCcccCHHHHHHHhchhcCCCcEE
Q 019692 271 E-RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQL 303 (337)
Q Consensus 271 G-~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~ 303 (337)
| .++|+.|. ++|++.++..+..||.-
T Consensus 189 g~~~~y~P~v-------eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 189 GVVVVYSPTV-------EQVEKTVEALRERGFVD 215 (256)
T ss_pred cEEEEEcCCH-------HHHHHHHHHHHhcCccc
Confidence 3 78888887 56666665444556654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=135.43 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.4
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
.+...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|++|++++++|+.++.... ...||
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D 242 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPD 242 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCe
Confidence 344346789999999999999999884 3689999999999999999999999988999999998764322 14699
Q ss_pred EEEECCCCCCcc
Q 019692 212 AILLDPSCSGSG 223 (337)
Q Consensus 212 ~IlvDpPCSg~G 223 (337)
.|++|||++|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999988754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=147.51 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=114.9
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
....++|.|..|.....++.... +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 35568899999988888777654 4889999999999999998874 4458999999999999999999999986
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+++++++|+.++.... ..+||+|++|||+.+.+- . .+++....+.+.+++..+.+++
T Consensus 590 ~v~~i~~D~~~~l~~~--~~~fDlIilDPP~f~~~~---~------------------~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 590 QHRLIQADCLAWLKEA--REQFDLIFIDPPTFSNSK---R------------------MEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred ceEEEEccHHHHHHHc--CCCcCEEEECCCCCCCCC---c------------------cchhhhHHHHHHHHHHHHHHHc
Confidence 6999999987653221 257999999999775421 1 1112234455778899999988
Q ss_pred CC-cEEEEEcCCCCcccC
Q 019692 269 GV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~EN 285 (337)
++ |.+++++|+-+....
T Consensus 647 ~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred CCCCEEEEEeCCccCChh
Confidence 86 888899998766654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-15 Score=137.50 Aligned_cols=144 Identities=22% Similarity=0.260 Sum_probs=104.3
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
....++|.|..|.....++.... .|.+|||++|.+|+++++.+. ++..+|++||.|...++.+++|++.+|++
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 44678999999999999988764 488999999999999987654 56668999999999999999999999974
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
.++++..|+.+........++||+|++|||-..-|. +. +.+-..+++..+++++
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------------------~~------~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------------------FD------LERDYKKLLRRAMKLL 228 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------------------CE------HHHHHHHHHHHHHHTE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------------------HH------HHHHHHHHHHHHHHhc
Confidence 699999998764322111358999999999442110 01 2344678999999998
Q ss_pred CC-cEEEEEcCCCCcccC
Q 019692 269 GV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~EN 285 (337)
++ |.|+.+|||-+-..+
T Consensus 229 ~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 229 KPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEEEEEE--TTS-HH
T ss_pred CCCCEEEEEcCCcccCHH
Confidence 87 899999999887765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=131.40 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=99.4
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.++.++.+++|+.|||.|||+|+.+..++.. ...|+|+|+++.+++.++.|++.+|+.++.++++|+.+++...
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~--- 246 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS--- 246 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc---
Confidence 3445567889999999999999988776553 4789999999999999999999999988999999999876542
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
++||.|++||||....... ......++.++|..+.+.+++ |.++|.+++-.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~-----------------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAA-----------------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred CCCCEEEECCCCcCccccc-----------------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 5799999999986432110 012346678999999998776 89999888743
|
This family is found exclusively in the Archaea. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=115.27 Aligned_cols=137 Identities=23% Similarity=0.327 Sum_probs=107.7
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
..+-..+....|.+++|++++|+|||+|+.|..++ ++.+.++|||+|.++++++..++|++++|++|++++.+|+-+..
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 34456677778999999999999999999999999 66889999999999999999999999999999999999987776
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
... .+||+||+- |+|. ...+|+.++..+++ |+||-- .
T Consensus 98 ~~~---~~~daiFIG----Gg~~--------------------------------i~~ile~~~~~l~~ggrlV~n---a 135 (187)
T COG2242 98 PDL---PSPDAIFIG----GGGN--------------------------------IEEILEAAWERLKPGGRLVAN---A 135 (187)
T ss_pred cCC---CCCCEEEEC----CCCC--------------------------------HHHHHHHHHHHcCcCCeEEEE---e
Confidence 542 369999984 2221 14789999998876 777753 2
Q ss_pred CcccCHHHHHHHhchhcCCCc-EEe
Q 019692 281 HQVENEDVIKSVLPIAMSFGF-QLA 304 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~-~~~ 304 (337)
...||+...-..+ ++.|+ +++
T Consensus 136 itlE~~~~a~~~~---~~~g~~ei~ 157 (187)
T COG2242 136 ITLETLAKALEAL---EQLGGREIV 157 (187)
T ss_pred ecHHHHHHHHHHH---HHcCCceEE
Confidence 3356666655555 34555 543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=134.45 Aligned_cols=90 Identities=27% Similarity=0.375 Sum_probs=63.4
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----- 204 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----- 204 (337)
..+++..++ .|||++||.|.+|+.+|... .+|+|+|+++.+++.|++|++.+|++|++++.+++.++....
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 345666655 89999999999999998864 789999999999999999999999999999988775543210
Q ss_pred --------CCCCCccEEEECCCCCCcc
Q 019692 205 --------PAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 205 --------~~~~~fD~IlvDpPCSg~G 223 (337)
.....+|.|++|||.+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0012689999999999975
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=114.65 Aligned_cols=129 Identities=20% Similarity=0.331 Sum_probs=100.0
Q ss_pred EechhhHHHHH--HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 121 LQGKASSMVAA--ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 121 ~Qd~ss~l~~~--~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
.-+.++.++.. ....-.|.+|+|+|||+|..++..+-+ +..+|+|+|+|+++++.+++|++++ ..+|.++..|+.
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~ 103 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVS 103 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchh
Confidence 33444444433 334456789999999999887755543 5689999999999999999999994 456999999998
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC 278 (337)
++. ..||.|+.||| .|+.+++.| +..|..|++. +.+||
T Consensus 104 ~~~------~~~dtvimNPP---FG~~~rhaD---------------------------r~Fl~~Ale~---s~vVY--- 141 (198)
T COG2263 104 DFR------GKFDTVIMNPP---FGSQRRHAD---------------------------RPFLLKALEI---SDVVY--- 141 (198)
T ss_pred hcC------CccceEEECCC---CccccccCC---------------------------HHHHHHHHHh---hheEE---
Confidence 875 56899999999 566677665 4678888776 58999
Q ss_pred CCCcccCHHHHHHHhc
Q 019692 279 SIHQVENEDVIKSVLP 294 (337)
Q Consensus 279 S~~~~ENe~vv~~~l~ 294 (337)
|+|..-+.+.++++.+
T Consensus 142 siH~a~~~~f~~~~~~ 157 (198)
T COG2263 142 SIHKAGSRDFVEKFAA 157 (198)
T ss_pred EeeccccHHHHHHHHH
Confidence 5788889999988874
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=135.55 Aligned_cols=89 Identities=28% Similarity=0.386 Sum_probs=74.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~ 209 (337)
..+.+.+|++|||+|||+|..++.++... .+|+|+|+|+.+++.+++|++.+|++|++++++|+.+..... ....+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34567789999999999999999998873 689999999999999999999999989999999987643211 01146
Q ss_pred ccEEEECCCCCCc
Q 019692 210 VRAILLDPSCSGS 222 (337)
Q Consensus 210 fD~IlvDpPCSg~ 222 (337)
||+|++|||++|.
T Consensus 368 fD~Vi~dPPr~g~ 380 (443)
T PRK13168 368 FDKVLLDPPRAGA 380 (443)
T ss_pred CCEEEECcCCcCh
Confidence 9999999998874
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=122.31 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=97.5
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
....+..+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.|++.+++.+...|..+|+++.+|++++|..+
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D- 117 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD- 117 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC-
Confidence 34555666677999999999999999999999986 7999999999999999999999999888999999999999776
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
++||+|.+ +.| +|+-+|+ .+.|+.+.+.++| |+++- +.+++-+
T Consensus 118 --~sFD~vt~---~fg---lrnv~d~--------------------------~~aL~E~~RVlKpgG~~~v--le~~~p~ 161 (238)
T COG2226 118 --NSFDAVTI---SFG---LRNVTDI--------------------------DKALKEMYRVLKPGGRLLV--LEFSKPD 161 (238)
T ss_pred --CccCEEEe---eeh---hhcCCCH--------------------------HHHHHHHHHhhcCCeEEEE--EEcCCCC
Confidence 68999986 222 2333221 4789999999888 54443 4445545
Q ss_pred C
Q 019692 285 N 285 (337)
Q Consensus 285 N 285 (337)
+
T Consensus 162 ~ 162 (238)
T COG2226 162 N 162 (238)
T ss_pred c
Confidence 5
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=118.01 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=94.2
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
|.++.+++..+...++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+++.+++++..|..+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 5678788877776688999999999999999999874 445899999999999999999999999889999999876543
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
..+||.|+++||....+ ..-.....++++.|.++|++ |.++.
T Consensus 96 ----~~~fD~Iv~NPP~~~~~---------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ----DGKFDLIVSNPPFHAGG---------------------------DDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ----TTCEEEEEE---SBTTS---------------------------HCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccceeEEEEccchhccc---------------------------ccchhhHHHHHHHHHHhccCCCEEEE
Confidence 26799999999932211 11234567889999998887 76533
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=123.67 Aligned_cols=140 Identities=22% Similarity=0.306 Sum_probs=99.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
+-.+...++...+++.||++||+.|.|+|..|..|+..+++.|+|+.+|+.+++++.|++|++..|+. +|++.+.|+..
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 33445566777899999999999999999999999999999999999999999999999999999995 69999999864
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CC-c-EEEEE
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GV-E-RVVYS 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~-~~-G-~lvYs 276 (337)
-.........||.||+|-| .|+ ..|.++.+.+ ++ | ..+||
T Consensus 104 ~g~~~~~~~~~DavfLDlp---------~Pw----------------------------~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLP---------DPW----------------------------EAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp G--STT-TTSEEEEEEESS---------SGG----------------------------GGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccccccCcccEEEEeCC---------CHH----------------------------HHHHHHHHHHhcCCceEEEEC
Confidence 3221111257999999999 332 3466776666 44 4 56777
Q ss_pred cCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 277 TCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
.|- ++|++.++..+..||..+
T Consensus 147 P~i-------eQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 147 PCI-------EQVQKTVEALREHGFTDI 167 (247)
T ss_dssp SSH-------HHHHHHHHHHHHTTEEEE
T ss_pred CCH-------HHHHHHHHHHHHCCCeee
Confidence 775 666666654444566553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=133.37 Aligned_cols=89 Identities=31% Similarity=0.366 Sum_probs=73.9
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~ 209 (337)
..+.+.++++|||+|||+|..++.+|... .+|+|+|+++.+++.+++|++.+|++|++++.+|+.+..+.. ....+
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34566778999999999999999999863 689999999999999999999999999999999987643211 01146
Q ss_pred ccEEEECCCCCCc
Q 019692 210 VRAILLDPSCSGS 222 (337)
Q Consensus 210 fD~IlvDpPCSg~ 222 (337)
||+|++|||++|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999998764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=118.78 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=83.0
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+......+...+++++|++|||+|||+|..+..++...+..++|+++|+++.+++.++++++++|++|++++++|
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 33333433345666778899999999999999999999999876668899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+...... ..+||+|++|+++
T Consensus 137 ~~~~~~~---~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 137 GTQGWEP---LAPYDRIYVTAAG 156 (215)
T ss_pred cccCCcc---cCCCCEEEEcCCc
Confidence 8765432 2579999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=106.33 Aligned_cols=110 Identities=21% Similarity=0.330 Sum_probs=83.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+. .+|+++++|+ ...... ..+||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~--~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF--LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT--SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc--CCCCCEEEE
Confidence 68899999999999999999953 458999999999999999999976665 5799999999 322222 256999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+. .+....+ .+ ..+.++|+++.+.+++ |.+|.+||
T Consensus 77 ~~-~~~~~~~--------------------------~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL--------------------------PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC--------------------------HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-Ccccccc--------------------------ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 65 2111111 01 4456778888887776 89999998
|
... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=117.95 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=96.4
Q ss_pred CeEEEechhhHHHHHHh---CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019692 117 GCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 193 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~ 193 (337)
|.+..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +..+|+++|+++.+++.+++|++.+|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 445555433 3444333 4678899999999999999988875 345999999999999999999999887 58899
Q ss_pred eccCCCCCCCCCCCCCccEEEECCCCC---CccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 019692 194 HGDFLNLDPKDPAYSEVRAILLDPSCS---GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 270 (337)
Q Consensus 194 ~~D~~~~~~~~~~~~~fD~IlvDpPCS---g~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~ 270 (337)
++|+..... ..+||.|++|||.. ..+...+.++..|.. . ......+..++..+.+++++
T Consensus 90 ~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 90 RGDWARAVE----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDA----------G----PDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ECchhhhcc----CCCeeEEEECCCCCCCCcccccccChhHhhhC----------C----CcHHHHHHHHHHHHHHhcCC
Confidence 999876432 25799999999843 333222222111100 0 01224467889999998886
Q ss_pred -cEEEEEcCCC
Q 019692 271 -ERVVYSTCSI 280 (337)
Q Consensus 271 -G~lvYsTCS~ 280 (337)
|.+++.+.+.
T Consensus 152 gG~l~~~~~~~ 162 (223)
T PRK14967 152 GGSLLLVQSEL 162 (223)
T ss_pred CcEEEEEEecc
Confidence 7777644333
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=130.23 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=71.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
++..++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++++++++|+.++.... ..+||.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~ 303 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ--MSAPEL 303 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--CCCCCE
Confidence 33346789999999999999999864 3689999999999999999999999989999999997654322 145999
Q ss_pred EEECCCCCCc
Q 019692 213 ILLDPSCSGS 222 (337)
Q Consensus 213 IlvDpPCSg~ 222 (337)
|++|||..|.
T Consensus 304 vi~DPPr~G~ 313 (374)
T TIGR02085 304 VLVNPPRRGI 313 (374)
T ss_pred EEECCCCCCC
Confidence 9999997653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=115.13 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=99.0
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 202 (337)
+...+....+++.++++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|+ .++.++.+|+.+..+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh
Confidence 3345555667889999999999999999999998876678999999999999999999999994 679999999876433
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.. ...||.|+++.. .. + ...+++.+.+++++ |.+|+.+|++
T Consensus 107 ~~--~~~~D~V~~~~~---~~------~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~- 148 (198)
T PRK00377 107 TI--NEKFDRIFIGGG---SE------K--------------------------LKEIISASWEIIKKGGRIVIDAILL- 148 (198)
T ss_pred hc--CCCCCEEEECCC---cc------c--------------------------HHHHHHHHHHHcCCCcEEEEEeecH-
Confidence 22 147999998531 00 0 13578888888776 8999888754
Q ss_pred cccCHHHHHHHh
Q 019692 282 QVENEDVIKSVL 293 (337)
Q Consensus 282 ~~ENe~vv~~~l 293 (337)
|+...+...|
T Consensus 149 --~~~~~~~~~l 158 (198)
T PRK00377 149 --ETVNNALSAL 158 (198)
T ss_pred --HHHHHHHHHH
Confidence 3444444445
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-14 Score=112.53 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=87.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
|.+|||+|||+|..+..+++.. ..+++++|+++..++.++.+++..++ .+++++++|+.+...... ..+||+|+.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-DGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-TT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-CceeEEEEEC
Confidence 6799999999999999998874 58999999999999999999999988 469999999988762221 3689999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
||......... ...+....+++++.+++++ |.+++.+|
T Consensus 78 pP~~~~~~~~~------------------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKA------------------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccch------------------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99875421110 0111456889999998887 88888876
|
... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=112.08 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=107.6
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
-+..+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++.+++ +++++.+|+.+..
T Consensus 4 ~~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~ 79 (179)
T TIGR00537 4 PAEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV 79 (179)
T ss_pred CCccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc
Confidence 34455667677777778899999999999999988852 3899999999999999999998886 5889999986643
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
..+||.|+++||+....--.+..+ +..........-...+..+|+.+.+++++ |.+++.+++.
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGD-----------WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccc-----------hhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 147999999999753321100000 00000000001134467899999998887 8998887665
Q ss_pred CcccCHHHHHHHhchhcCCCcEEe
Q 019692 281 HQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
. +...+..+|+ ..||...
T Consensus 144 ~---~~~~~~~~l~---~~gf~~~ 161 (179)
T TIGR00537 144 N---GEPDTFDKLD---ERGFRYE 161 (179)
T ss_pred C---ChHHHHHHHH---hCCCeEE
Confidence 4 3555566663 3456553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=117.03 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=111.6
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~ 203 (337)
.++|.+.+..+....+|||+|||.|..++.+|+...+ .+|++||+++++.+.|++|++.+++. +|+++++|+.++...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4788888888888999999999999999999998544 89999999999999999999998885 599999999998766
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHH-----HHHHHHHHhCCCCC-cEEEEEc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----QKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-----Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.. ..+||.|+++||.--.|.- .+ +......+.. -.++++.|.+++++ |++.+
T Consensus 111 ~~-~~~fD~Ii~NPPyf~~~~~-~~------------------~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-- 168 (248)
T COG4123 111 LV-FASFDLIICNPPYFKQGSR-LN------------------ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-- 168 (248)
T ss_pred cc-ccccCEEEeCCCCCCCccc-cC------------------cChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE--
Confidence 53 4579999999998776643 11 1112222221 35678888888887 88866
Q ss_pred CCCCcccCHHHHHHHh
Q 019692 278 CSIHQVENEDVIKSVL 293 (337)
Q Consensus 278 CS~~~~ENe~vv~~~l 293 (337)
+++.|.=.-+-..+
T Consensus 169 --V~r~erl~ei~~~l 182 (248)
T COG4123 169 --VHRPERLAEIIELL 182 (248)
T ss_pred --EecHHHHHHHHHHH
Confidence 67777655555555
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=118.14 Aligned_cols=91 Identities=27% Similarity=0.291 Sum_probs=70.9
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.+ +.+++|++|||+|||||++|.+++..+++.+.|+|+|+++++++.+.+.++.. .||.++.+|+..
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 4555554 45789999999999999999999999988899999999998887777666543 578999999875
Q ss_pred CCCCCCCCCCccEEEECCC
Q 019692 200 LDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpP 218 (337)
..........||+||+|..
T Consensus 193 p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhhcccCCCCEEEEeCC
Confidence 3211111247999999984
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=117.79 Aligned_cols=126 Identities=16% Similarity=0.150 Sum_probs=92.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+|||+|||+|..++.++.... ..+|+++|+|+.+++.+++|++.+| ++++++|+.+...... .++||+|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~-~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL-RGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc-CCCEeEEEECC
Confidence 45899999999999999988753 3689999999999999999999876 3678899876432211 24699999999
Q ss_pred CCCCccccCcc-cCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 218 SCSGSGTAAER-LDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 218 PCSg~G~~~~~-~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
||...+.+.+. ++... +.....+ ....+.+++++..|.+++++ |.+++.+.
T Consensus 162 Py~~~~~~~~~~~e~~~----------~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 162 PYVPTDAIALMPPEARD----------HEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCCCchhhhcCCHHHHh----------CCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99987765431 11100 0011111 13456789999999999887 88887655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-13 Score=120.34 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=82.1
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.++..+.+++|++|||+|||||..+..+++.+++.++|+++|+|+.|++.++++++..+..+|+++++|+++++..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--- 114 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--- 114 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---
Confidence 44556678899999999999999999999988778999999999999999999999998889999999999998664
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
++||.|++ +.| +++-+| +.+.|++..+.++| |.++... ++.-+|.
T Consensus 115 ~sfD~v~~-----~fg-lrn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~ 160 (233)
T PF01209_consen 115 NSFDAVTC-----SFG-LRNFPD--------------------------RERALREMYRVLKPGGRLVILE--FSKPRNP 160 (233)
T ss_dssp T-EEEEEE-----ES--GGG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH
T ss_pred CceeEEEH-----Hhh-HHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc
Confidence 68999984 223 233222 24678888898887 7776543 3444453
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=113.49 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=83.4
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+..-...+...+++++|++|||+|||+|+.|..+++.++..++|+++|+++.+++.++++++++|+.||+++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44555555556667778899999999999999999999999887678999999999999999999999999899999999
Q ss_pred CCCCCCCCCCCCCccEEEECC
Q 019692 197 FLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDp 217 (337)
+....+. ...||+|+++.
T Consensus 136 ~~~~~~~---~~~fD~I~~~~ 153 (212)
T PRK13942 136 GTLGYEE---NAPYDRIYVTA 153 (212)
T ss_pred cccCCCc---CCCcCEEEECC
Confidence 8765433 25799999864
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=126.42 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=67.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC------------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP------------ 205 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~------------ 205 (337)
+.+|||+|||+|.+++.++... .+|+++|+++.+++.+++|++.+|+.|++++.+|+.++.....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 5899999999999999999999999999999999876432100
Q ss_pred -CCCCccEEEECCCCCCc
Q 019692 206 -AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 -~~~~fD~IlvDpPCSg~ 222 (337)
...+||+|++|||.+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 01258999999998653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=109.61 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=91.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+.+|||+|||+|..+..++....+.++++++|+++.+++.++++++++++.|++++++|+.+++...+ .+||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~--~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE--EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS--TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC--CCeeEEEE
Confidence 4688999999999999999997666678999999999999999999999999999999999999653211 58999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHH
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIK 290 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~ 290 (337)
+.++.... .+..+++.+.+++++ |.++.+.+. +..|.++.+.
T Consensus 80 ~~~l~~~~--------------------------------~~~~~l~~~~~~lk~~G~~i~~~~~-~~~~~~~~~~ 122 (152)
T PF13847_consen 80 NGVLHHFP--------------------------------DPEKVLKNIIRLLKPGGILIISDPN-HNDELPEQLE 122 (152)
T ss_dssp ESTGGGTS--------------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-HSHHHHHHHH
T ss_pred cCchhhcc--------------------------------CHHHHHHHHHHHcCCCcEEEEEECC-hHHHHHHHHH
Confidence 87751110 124678888888886 666655555 3444444433
|
... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=124.54 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------C---
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---------P--- 205 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---------~--- 205 (337)
+++|||+|||+|.+++.++... .+|+|+|+++.+++.+++|++.+|+.|++++.+|+.++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999998874 589999999999999999999999999999999987643210 0
Q ss_pred -CCCCccEEEECCCCCCc
Q 019692 206 -AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 -~~~~fD~IlvDpPCSg~ 222 (337)
....||.|++|||.+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 01248999999997764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-12 Score=112.20 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=67.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+++|++|||+|||+|.++.+++..++ .++|+|+|+++.|++.+.+++++. .||.++.+|+...........+||+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCE
Confidence 7788999999999999999999999875 689999999999999988887754 6799999998753111111246999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|++|.+
T Consensus 145 i~~d~~ 150 (226)
T PRK04266 145 IYQDVA 150 (226)
T ss_pred EEECCC
Confidence 998754
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-12 Score=110.00 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=106.9
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|.-..|++...++...+.+.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++|+.+++++.+|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4456788888888888899999999999999999999998764 458999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
+.+..... ...+|.|++|.. .. ...++..+.+.+++ |.+++
T Consensus 99 ~~~~~~~~--~~~~d~v~~~~~--------~~----------------------------~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 99 APECLAQL--APAPDRVCIEGG--------RP----------------------------IKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred hHHHHhhC--CCCCCEEEEECC--------cC----------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 86532111 134678877631 00 13678888877776 88888
Q ss_pred EcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 276 STCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 276 sTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+++. |.-..+...++.....+++...
T Consensus 141 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 141 TASSL---EGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred EeecH---HHHHHHHHHHHhcCCCCceEEE
Confidence 87762 2222233444332344566544
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=121.19 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=117.2
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~ 202 (337)
.-|..++++..+++|+.|||-+||||++.....-. +.+++|+|++.+|++-++.|++.+|+....+... |+++++.
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 44667788888999999999999999887665443 4799999999999999999999999988777776 9999984
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.. .+||.|++|||.--+- ......+.++..++|+.+.+.+++ |.+||.+=
T Consensus 261 ~~---~~vdaIatDPPYGrst-----------------------~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--- 311 (347)
T COG1041 261 RD---NSVDAIATDPPYGRST-----------------------KIKGEGLDELYEEALESASEVLKPGGRIVFAAP--- 311 (347)
T ss_pred CC---CccceEEecCCCCccc-----------------------ccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---
Confidence 43 3699999999953221 111223778889999999998886 88999654
Q ss_pred cccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh
Q 019692 282 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 316 (337)
Q Consensus 282 ~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (337)
....+.....+|++...+..|.+++..
T Consensus 312 --------~~~~~~~~~~~f~v~~~~~~~~H~sLt 338 (347)
T COG1041 312 --------RDPRHELEELGFKVLGRFTMRVHGSLT 338 (347)
T ss_pred --------CcchhhHhhcCceEEEEEEEeecCceE
Confidence 111112235678888888888776654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-12 Score=116.17 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=92.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|.++++|+.+..+ ..+||+|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~----~~~fD~I 193 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP----GRKYDLI 193 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC----CCCccEE
Confidence 3456799999999999999999875 3579999999999999999999999985 59999999865321 1469999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHH-H---HHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-L---NKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~-~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++|||+...+.+..-+... . ..+.. + ..--..++.++..+.+++++ |.++.-+
T Consensus 194 v~NPPy~~~~~~~~l~~~~----------~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEY----------H-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EECCCCCCccchhhCCHhh----------h-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999997665432111000 0 00111 0 01235678899999998887 6666443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=107.55 Aligned_cols=124 Identities=20% Similarity=0.203 Sum_probs=95.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+|.+|||+|||+|..+..++.. .+.++|+++|.++.+++.++++++++|+++++++++|+.++.. .++||.|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 4889999999999999998865 4557999999999999999999999999889999999988632 2579999986
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
. +.. . ..+++.+.+++++ |.++.. +....+..+....+.
T Consensus 117 ~-------~~~-------------------~----------~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 117 A-------LAS-------------------L----------NVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRK 156 (181)
T ss_pred h-------hhC-------------------H----------HHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHh
Confidence 4 110 0 2345566677776 777653 455667777777666
Q ss_pred hcCCCcEEec
Q 019692 296 AMSFGFQLAT 305 (337)
Q Consensus 296 ~~~~~~~~~~ 305 (337)
+...|++.++
T Consensus 157 ~~~~~~~~~~ 166 (181)
T TIGR00138 157 CQVLGVEPLE 166 (181)
T ss_pred hhhcCceEee
Confidence 5667888765
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=108.42 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=97.8
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
..++.....+...+++.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|++++++.+++++.+|+..
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 4455555666677788889999999999999999999874 458999999999999999999999998889999998742
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
.. ..+||+|+++.. .. . . ..+++.+.+.+++ |.+++...
T Consensus 93 ~~-----~~~~D~v~~~~~------~~-~------------------~----------~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 93 EL-----PGKADAIFIGGS------GG-N------------------L----------TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred hc-----CcCCCEEEECCC------cc-C------------------H----------HHHHHHHHHhcCCCeEEEEEEe
Confidence 11 146999998632 00 0 0 2467777787776 77776432
Q ss_pred CCCcccCHHHHHHHhc
Q 019692 279 SIHQVENEDVIKSVLP 294 (337)
Q Consensus 279 S~~~~ENe~vv~~~l~ 294 (337)
..+|...+..+++
T Consensus 133 ---~~~~~~~~~~~l~ 145 (187)
T PRK08287 133 ---LLENLHSALAHLE 145 (187)
T ss_pred ---cHhhHHHHHHHHH
Confidence 3456666666664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-12 Score=110.66 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.+++++++|+.+..... ...||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEE
Confidence 56889999999999999865443 24799999999999999999999999988999999987643221 246999999
Q ss_pred CCCC
Q 019692 216 DPSC 219 (337)
Q Consensus 216 DpPC 219 (337)
|||.
T Consensus 128 DPPy 131 (199)
T PRK10909 128 DPPF 131 (199)
T ss_pred CCCC
Confidence 9993
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=108.38 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=77.0
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 204 (337)
...+...+++++|++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++++|+. +++++++|+.+..+.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 345566778889999999999999999999998876789999999999999999999999985 499999998765433
Q ss_pred CCCCCccEEEECCC
Q 019692 205 PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ~~~~~fD~IlvDpP 218 (337)
..+||+|+++..
T Consensus 140 --~~~fD~Ii~~~~ 151 (205)
T PRK13944 140 --HAPFDAIIVTAA 151 (205)
T ss_pred --CCCccEEEEccC
Confidence 257999999865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=114.40 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.....++.++++|+..... ..+||+|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~I 179 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLI 179 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEE
Confidence 45578899999999999999999886 457999999999999999999983344579999999865332 2579999
Q ss_pred EECCCCCCccccCc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 214 LLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 214 lvDpPCSg~G~~~~-~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
++|||+...+.+.. .++....+ ....+ ......+..++.++.+++++ |.+++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~e----------p~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHE----------PHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcC----------CchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999987765421 11110000 00000 12345678899999998887 666653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-11 Score=107.78 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=89.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++... +...|+++|+++.+++.++++++..|+.++.++++|+.+... ..+||+|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEEC
Confidence 35699999999999999999875 346999999999999999999999999889999999876321 2579999999
Q ss_pred CCCCCccccCccc-CccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 217 PSCSGSGTAAERL-DHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 217 pPCSg~G~~~~~~-d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
||+...+....-. +... + .....+ ..-......++.++.+++++ |.+++.
T Consensus 162 pPy~~~~~~~~~~~~~~~--~--------e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRF--H--------EPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCCCchhhhhhcChhhhh--c--------CCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9998766432100 0000 0 000000 01123345788999998887 666654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-12 Score=111.73 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=81.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....|-.--..+..+|+++||++|||+|||+|+.|..++.+++..++|+++|+++..++.++++++.+|..||.++++|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 45555555556667889999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
.....+. ...||+|++.+.|.
T Consensus 132 g~~g~~~---~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 132 GSEGWPE---EAPFDRIIVTAAVP 152 (209)
T ss_dssp GGGTTGG---G-SEEEEEESSBBS
T ss_pred hhhcccc---CCCcCEEEEeeccc
Confidence 8765433 35799999987653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=96.31 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=86.6
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+...+.+.++.+|||+|||+|..+..+++... .++|+++|+++.+++.++++++.++..+++++.+|+....... ..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LP 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cC
Confidence 34456677789999999999999999998764 3799999999999999999999999888999999877543222 24
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
+||.|+++.+ .. ...++++.+.+++++ |.++.+
T Consensus 88 ~~D~v~~~~~------~~-----------------------------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGS------GG-----------------------------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCEEEECCc------ch-----------------------------hHHHHHHHHHHHcCCCCEEEEE
Confidence 7999998642 00 023789999998887 777654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=113.42 Aligned_cols=123 Identities=14% Similarity=0.200 Sum_probs=89.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++++|+. +|+++++|+.+..+ ..+||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~----~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP----GRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----CCCccEEEEC
Confidence 3689999999999999999874 4579999999999999999999999985 59999999865332 1469999999
Q ss_pred CCCCCccccCccc-Ccc-CCCC-CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 217 PSCSGSGTAAERL-DHL-LPSH-ASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 217 pPCSg~G~~~~~~-d~~-~~~~-~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
||+.+.+.+..-+ +.. .|.. ..+. ..--...+.++..+.+++++ |.+++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg----------~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAG----------DDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCC----------CchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9998876532111 100 0000 0000 01125667899999998887 66664
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=107.34 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=86.5
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
.|..+.|-.--..+..+|++++|++||++|||+|+.|..||++. ++|+++|+++...+.+++|++.+|+.||.++++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 56677777667778889999999999999999999999999996 599999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCC
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
|...-.+. ...||+|++.+-+
T Consensus 128 DG~~G~~~---~aPyD~I~Vtaaa 148 (209)
T COG2518 128 DGSKGWPE---EAPYDRIIVTAAA 148 (209)
T ss_pred CcccCCCC---CCCcCEEEEeecc
Confidence 98766544 3689999997663
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=108.24 Aligned_cols=87 Identities=16% Similarity=0.334 Sum_probs=75.1
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+.++++++.+|+...+..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--- 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD--- 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC---
Confidence 34455677888999999999999999999998766789999999999999999999988888899999999876533
Q ss_pred CCCccEEEEC
Q 019692 207 YSEVRAILLD 216 (337)
Q Consensus 207 ~~~fD~IlvD 216 (337)
.++||.|+++
T Consensus 112 ~~~fD~V~~~ 121 (231)
T TIGR02752 112 DNSFDYVTIG 121 (231)
T ss_pred CCCccEEEEe
Confidence 2579999975
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=119.97 Aligned_cols=112 Identities=27% Similarity=0.320 Sum_probs=88.7
Q ss_pred HHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
+++..+... ++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+|+.+++++++|+..+...
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--- 122 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--- 122 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---
Confidence 334444333 457999999999999999988753 358999999999999999999999999899999998765432
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
...||+|++||| |++ ...|..|+..+++|.++|.||+
T Consensus 123 ~~~fD~V~lDP~--Gs~----------------------------------~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 123 ERKFDVVDIDPF--GSP----------------------------------APFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred cCCCCEEEECCC--CCc----------------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 146999999998 442 2467777777777899999865
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=106.39 Aligned_cols=136 Identities=18% Similarity=0.085 Sum_probs=98.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..++.++.++++|+ ..++...+ ...||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP-DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-ccccceEEE
Confidence 57899999999999999999875 4478999999999999999999999988899999998 55441111 257999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+.|... .+.+. + . -...+..+|+.+.+++++ |.++++|+ |+..+..+++
T Consensus 118 ~~~~p~----~~~~~-----~-------------~--~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 118 NFPDPW----PKKRH-----H-------------K--RRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred ECCCCC----CCccc-----c-------------c--cccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHH
Confidence 755210 00000 0 0 001246788898888887 67766553 6777777776
Q ss_pred hhcCCCcEEe
Q 019692 295 IAMSFGFQLA 304 (337)
Q Consensus 295 ~~~~~~~~~~ 304 (337)
.....||...
T Consensus 168 ~~~~~g~~~~ 177 (202)
T PRK00121 168 VLSAEGGFLV 177 (202)
T ss_pred HHHhCccccc
Confidence 6566677664
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=111.71 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=102.3
Q ss_pred hcCeEEEechhhHHHHHHh-CCCCCC-eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 115 VNGCVFLQGKASSMVAAAL-APKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l-~~~~g~-~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
..+.++....+..++-.++ ...... +|||+|||+|..++.++... +...|+|+|+|+.+++.+++|++++|+.++.+
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~ 164 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLV 164 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEE
Confidence 3455555555555555533 222223 79999999999999999875 34799999999999999999999999877777
Q ss_pred EeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCC
Q 019692 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPG 269 (337)
Q Consensus 193 ~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~ 269 (337)
+..|..... .++||+|+++||.=-.- .....++.. ++.....+. .--+.-++++..+..+++
T Consensus 165 ~~~dlf~~~-----~~~fDlIVsNPPYip~~-----~~~~~~~~~-----~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 165 VQSDLFEPL-----RGKFDLIVSNPPYIPAE-----DPELLPEVV-----RYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred Eeeeccccc-----CCceeEEEeCCCCCCCc-----ccccChhhh-----ccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 777755432 14799999999954321 000111000 000000000 223467889999999888
Q ss_pred CcEEEEEcCCCCcccCHHHHHHHh
Q 019692 270 VERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 270 ~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+|.++..-++... .+.|.+.+.
T Consensus 230 ~~g~l~le~g~~q--~~~v~~~~~ 251 (280)
T COG2890 230 PGGVLILEIGLTQ--GEAVKALFE 251 (280)
T ss_pred CCcEEEEEECCCc--HHHHHHHHH
Confidence 8666665555444 334444443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-11 Score=103.76 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++.+++++++++++|+.++.. .++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEEE
Confidence 348999999999999999999864 468999999999999999999999999889999999988654 257999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+. .+ . . ..+++.+.+++++ |.+++.-..
T Consensus 119 ~~----~~----~------------------~----------~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 119 RA----VA----S------------------L----------SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred cc----cc----C------------------H----------HHHHHHHHHhcCCCeEEEEEeCC
Confidence 52 11 0 0 3567888888887 788876555
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-11 Score=104.61 Aligned_cols=97 Identities=27% Similarity=0.319 Sum_probs=79.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|..+.+......+...+.++++.+|||+|||+|..+..++... ++|+++|+++.+++.++++++++|+.++.++.+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3444454444566667888999999999999999999888874 5899999999999999999999999899999999
Q ss_pred CCCCCCCCCCCCCccEEEECCCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+.+..+. .++||+|+++.+|
T Consensus 135 ~~~~~~~---~~~fD~I~~~~~~ 154 (212)
T PRK00312 135 GWKGWPA---YAPFDRILVTAAA 154 (212)
T ss_pred cccCCCc---CCCcCEEEEccCc
Confidence 8654322 2579999998764
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-11 Score=102.87 Aligned_cols=127 Identities=23% Similarity=0.329 Sum_probs=89.5
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCC--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEec
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHG 195 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g--------~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~ 195 (337)
-+..+..+.++++|+.|||-+||+|++.+..+....+.. +++|+|+++++++.+++|++..|+.. |.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 345556677889999999999999998877776654433 38999999999999999999999875 999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 275 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvY 275 (337)
|+.+++.. .+.+|.|++|||. | ++ ...-..+.++..++++.+.+.+++ ..|+
T Consensus 96 D~~~l~~~---~~~~d~IvtnPPy---G---~r------------------~~~~~~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 96 DARELPLP---DGSVDAIVTNPPY---G---RR------------------LGSKKDLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp -GGGGGGT---TSBSCEEEEE--S---T---TS------------------HCHHHHHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred chhhcccc---cCCCCEEEECcch---h---hh------------------ccCHHHHHHHHHHHHHHHHHHCCC-CEEE
Confidence 99998832 2579999999994 1 11 112234577888999999997775 6666
Q ss_pred EcCC
Q 019692 276 STCS 279 (337)
Q Consensus 276 sTCS 279 (337)
.|++
T Consensus 148 l~~~ 151 (179)
T PF01170_consen 148 LTTS 151 (179)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6665
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=111.04 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=94.3
Q ss_pred EEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019692 119 VFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~ 197 (337)
++.......++..++. +.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++++. +++++++|+
T Consensus 232 LIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl 309 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW 309 (423)
T ss_pred cCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence 3333334444444433 3467799999999999999888764 457999999999999999999999886 699999998
Q ss_pred CCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCCC-cEE
Q 019692 198 LNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
.+..... ..+||.|++|||....+-....+.. .+......+. .--+..+.+++.+.+.+++ |.+
T Consensus 310 ~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~----------v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~l 377 (423)
T PRK14966 310 FDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGD----------LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFL 377 (423)
T ss_pred hcccccc--CCCccEEEECCCCCCcchhhhcchh----------hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEE
Confidence 6543211 2479999999997655421100000 0000000110 1223467889999888887 665
Q ss_pred EE
Q 019692 274 VY 275 (337)
Q Consensus 274 vY 275 (337)
++
T Consensus 378 il 379 (423)
T PRK14966 378 LL 379 (423)
T ss_pred EE
Confidence 54
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=107.99 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=96.8
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
-|..|.+....+....+.+|||+|||.|..++.+++.. +..+|+-+|+|..+++.+++|++.+++++..+...|..+-.
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence 47789999999998888899999999999999999985 56899999999999999999999999988656666654322
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||.|+++||-- .| .+ -....-.+++..|.+.|+. |.|-...=..
T Consensus 222 -----~~kfd~IisNPPfh-~G-----~~---------------------v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 222 -----EGKFDLIISNPPFH-AG-----KA---------------------VVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred -----cccccEEEeCCCcc-CC-----cc---------------------hhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 24799999999932 11 00 1112235789999998775 7554443333
Q ss_pred C
Q 019692 281 H 281 (337)
Q Consensus 281 ~ 281 (337)
.
T Consensus 270 l 270 (300)
T COG2813 270 L 270 (300)
T ss_pred C
Confidence 3
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=107.24 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=88.3
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~---~g~~~v~~~~~D~~~~~~~~ 204 (337)
+....+.+.++++|||+|||+|..+..+++..++.++|+|+|+|++|++.++++... .+..++.++++|+.+++..+
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 444566778899999999999999999998876668999999999999999887642 23457999999999887543
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||.|++. . +++.-+| ...+|.++.+.+++ |.++.++.+
T Consensus 144 ---~sfD~V~~~-----~-~l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 ---CYFDAITMG-----Y-GLRNVVD--------------------------RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ---CCEeEEEEe-----c-ccccCCC--------------------------HHHHHHHHHHHcCcCcEEEEEECC
Confidence 579999852 1 1211111 24678888888887 788776655
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=111.29 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=92.5
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN 199 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---~~v~~~~~D~~~ 199 (337)
|..+.+....+....+++|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++|++.++. .+++++..|...
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6778888887776667799999999999999998874 568999999999999999999998874 368888888754
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
... ..+||.|+++||.---.. .+.. .-.+++..|.+.+++ |.+....
T Consensus 293 ~~~----~~~fDlIlsNPPfh~~~~--------------------~~~~-------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVE----PFRFNAVLCNPPFHQQHA--------------------LTDN-------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCC----CCCEEEEEECcCcccCcc--------------------CCHH-------HHHHHHHHHHHhcccCCEEEEEE
Confidence 321 147999999999532100 0111 124688899888887 6555543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=106.81 Aligned_cols=127 Identities=10% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++.+ +.++.+|+.+..+ ..+||+|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~----~~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA----GQKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc----CCCccEEEEC
Confidence 3699999999999999999875 34799999999999999999999999865 9999999865321 1379999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
||+-...-+...++... +.....+ ..--...+.++..+.+++++ |.+++-++.
T Consensus 190 PPyi~~~~~~~~~~~~~----------~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVR----------FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCCCcchhhcCCcccc----------cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99875542211111000 0000000 01224678899999998887 777765554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=111.67 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=100.3
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
.|..+.+....+.....++|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++.+++. .+++..|.....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~ 258 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI 258 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc
Confidence 35667777777765556799999999999999999874 4568999999999999999999999875 467777865421
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||.|+++||-- .|. + .+. ..-.++++.|.+.+++ |.++..+.+.
T Consensus 259 -----~~~fDlIvsNPPFH-~g~-----~--------------~~~-------~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 259 -----KGRFDMIISNPPFH-DGI-----Q--------------TSL-------DAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred -----CCCccEEEECCCcc-CCc-----c--------------ccH-------HHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 25799999999931 110 0 001 1225778899888886 8999988988
Q ss_pred CcccCHHHHHHH
Q 019692 281 HQVENEDVIKSV 292 (337)
Q Consensus 281 ~~~ENe~vv~~~ 292 (337)
.+-+ ..+++.
T Consensus 307 l~y~--~~l~~~ 316 (342)
T PRK09489 307 LPYP--DLLDET 316 (342)
T ss_pred CChH--HHHHHH
Confidence 8766 344443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=99.05 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=103.0
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK 203 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~~~ 203 (337)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++..++..+ +.++++|+.+....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 88 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG 88 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence 455555666678899999999999999999886 4789999999999999999999988866 88999987653321
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ 282 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~ 282 (337)
..||.|+++||+...+- +..+.. + .. .....-..-......+++++.+++++ |.+++..+++..
T Consensus 89 ----~~~d~vi~n~p~~~~~~-----~~~~~~-~----~~-~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 89 ----DKFDVILFNPPYLPTEE-----EEEWDD-W----LN-YALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred ----cCceEEEECCCcCCCCc-----hhhhhh-h----hh-hhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 37999999999754321 110000 0 00 00000000123456788999898887 777777666543
Q ss_pred ccCHHHHHHHhchhcCCCcEEe
Q 019692 283 VENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 283 ~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
. +. +..+++ +.||+..
T Consensus 154 ~--~~-l~~~~~---~~g~~~~ 169 (188)
T PRK14968 154 E--DE-VLEYLE---KLGFEAE 169 (188)
T ss_pred H--HH-HHHHHH---HCCCeee
Confidence 2 33 334442 3466653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=106.12 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=87.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|+.+++..+ +.||+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVDV 149 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---CceeE
Confidence 457889999999999999888888877777899999999999999999999999989999999998776432 57999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
|+.+.- +...++ ...+++.+.+++++ |.++.+.
T Consensus 150 Vi~~~v------~~~~~d--------------------------~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCV------INLSPD--------------------------KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCc------ccCCCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 997632 111111 13678888898887 7777653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=109.97 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=74.6
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.....++++++++|||+|||+|..+..+++..+..+.|+++|+++++++.++++++++|+++|.++.+|+.......
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--- 147 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--- 147 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---
Confidence 33455678899999999999999999999987656789999999999999999999999989999999987655432
Q ss_pred CCccEEEECC
Q 019692 208 SEVRAILLDP 217 (337)
Q Consensus 208 ~~fD~IlvDp 217 (337)
..||+|+++.
T Consensus 148 ~~fD~Ii~~~ 157 (322)
T PRK13943 148 APYDVIFVTV 157 (322)
T ss_pred CCccEEEECC
Confidence 5699999874
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-11 Score=118.30 Aligned_cols=117 Identities=19% Similarity=0.350 Sum_probs=92.0
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--C
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--Y 207 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~ 207 (337)
...++...+..++|+|||+|.+++.+|+.+ .+|+++|++++.+..|+.|++.+|+.|.+++++-++++.+.... .
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~ 452 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCC 452 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCC
Confidence 345677788999999999999999888854 78999999999999999999999999999999977776544321 1
Q ss_pred CCcc-EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcc
Q 019692 208 SEVR-AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 283 (337)
Q Consensus 208 ~~fD-~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ 283 (337)
.+=+ ++++|||.+|.- ...+.....+.++.++||.||..+-.
T Consensus 453 ~~~~~v~iiDPpR~Glh----------------------------------~~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 453 DSETLVAIIDPPRKGLH----------------------------------MKVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCceEEEECCCccccc----------------------------------HHHHHHHHhccCccceEEEEcCHHHh
Confidence 2335 899999987652 23444444455568999999998765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=115.18 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=85.5
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+++.++++++.|+..+.... ..+||+|++||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCCC
Confidence 489999999999999998875455799999999999999999999999988999999988765432 246999999997
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
|+. ...|+.|++.++.|.++|.|||
T Consensus 124 --Gs~----------------------------------~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTP----------------------------------APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCc----------------------------------HHHHHHHHHhcccCCEEEEEec
Confidence 321 1468888887777788888876
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-11 Score=106.30 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=78.3
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 202 (337)
....+...++...++.+|||+|||+|+.++.++..+.+.++|+++|+++++++.+++|++++|+. +|+++.+|+.+..+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 34555566666677889999999999999999998877899999999999999999999999986 49999999977532
Q ss_pred CC---CCCCCccEEEECCC
Q 019692 203 KD---PAYSEVRAILLDPS 218 (337)
Q Consensus 203 ~~---~~~~~fD~IlvDpP 218 (337)
.. ...++||+||+|++
T Consensus 135 ~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHhCCCCCCCCEEEECCC
Confidence 11 01257999999986
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=103.81 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=61.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
..|+|+|||.||-++++|... .+|+|+|+++.+++.+++|++-+|+. +|.++++|+.++.........||+|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 379999999999999999973 58999999999999999999999974 69999999988754422111289999999
Q ss_pred CCCCcccc
Q 019692 218 SCSGSGTA 225 (337)
Q Consensus 218 PCSg~G~~ 225 (337)
|--|-.-.
T Consensus 78 PWGGp~Y~ 85 (163)
T PF09445_consen 78 PWGGPSYS 85 (163)
T ss_dssp -BSSGGGG
T ss_pred CCCCcccc
Confidence 98876544
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-11 Score=103.92 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=94.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++... +...|+|+|+++.+++.+++++++.|+.||+++++|+.++.......+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46699999999999999999874 56799999999999999999999999999999999997654221112479999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
.|.- . +.... .+.+ -.+..++..+.+.+++ |.+..+| .++....++++.
T Consensus 95 ~pdp---------w---~k~~h-------~~~r-----~~~~~~l~~~~r~LkpgG~l~~~t------d~~~~~~~~~~~ 144 (194)
T TIGR00091 95 FPDP---------W---PKKRH-------NKRR-----ITQPHFLKEYANVLKKGGVIHFKT------DNEPLFEDMLKV 144 (194)
T ss_pred CCCc---------C---CCCCc-------cccc-----cCCHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHHHHH
Confidence 8721 1 10000 0000 1135788888888887 6776654 334444443322
Q ss_pred -hcCCCcEEec
Q 019692 296 -AMSFGFQLAT 305 (337)
Q Consensus 296 -~~~~~~~~~~ 305 (337)
....+|+...
T Consensus 145 ~~~~~~f~~~~ 155 (194)
T TIGR00091 145 LSENDLFENTS 155 (194)
T ss_pred HHhCCCeEecc
Confidence 1344576643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=102.88 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=109.5
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLN 199 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----g~V~avD~~~~~l~~l~~~~~~~g~~---~v~~~~~D~~~ 199 (337)
+.+..|++..|.++||+|+|+|..|+.+...+... ++|+.+|+|+.|+..++++.++.++. .+.++.+|+++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 44556788899999999999999999999988653 79999999999999999999887763 38999999999
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
++..+ ..||...+ +-|+ |+-+|+ .+.|+.|.+.||||..++ |-
T Consensus 171 LpFdd---~s~D~yTi-----afGI-RN~th~--------------------------~k~l~EAYRVLKpGGrf~--cL 213 (296)
T KOG1540|consen 171 LPFDD---DSFDAYTI-----AFGI-RNVTHI--------------------------QKALREAYRVLKPGGRFS--CL 213 (296)
T ss_pred CCCCC---CcceeEEE-----ecce-ecCCCH--------------------------HHHHHHHHHhcCCCcEEE--EE
Confidence 99665 56888764 3343 432221 467999999999855444 88
Q ss_pred CCcccCHHHHHHHhchhcCCCcEEecCCCCC
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQLATPFPNG 310 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~ 310 (337)
.++.+|.+.+++|-+ ..-|++.+.+..|
T Consensus 214 eFskv~~~~l~~fy~---~ysf~VlpvlG~~ 241 (296)
T KOG1540|consen 214 EFSKVENEPLKWFYD---QYSFDVLPVLGEI 241 (296)
T ss_pred EccccccHHHHHHHH---hhhhhhhchhhHh
Confidence 889888888888874 2234454443333
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=107.49 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=84.8
Q ss_pred eEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEecc
Q 019692 118 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 196 (337)
Q Consensus 118 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D 196 (337)
...+.....++...++......+|||+|+++|+.|+++|..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd 178 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL 178 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 34556666777777777778899999999999999999998887889999999999999999999999996 69999999
Q ss_pred CCCCCCCC---CCCCCccEEEECCC
Q 019692 197 FLNLDPKD---PAYSEVRAILLDPS 218 (337)
Q Consensus 197 ~~~~~~~~---~~~~~fD~IlvDpP 218 (337)
+.+..+.. ...++||.||+|++
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCC
Confidence 87653221 11257999999998
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=103.08 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=100.1
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~-~D~~~~ 200 (337)
.+...+...++......+||++|++.|+.|++||..+...++++++|+++++.+.|++|+++.|+.+ |+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5666777777788888999999999999999999999878999999999999999999999999977 88888 587766
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI 280 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~ 280 (337)
... ...++||+||+|+- +.+ +...+..+.+++++|.||.+---+
T Consensus 125 l~~-~~~~~fDliFIDad---------K~~--------------------------yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 125 LSR-LLDGSFDLVFIDAD---------KAD--------------------------YPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHh-ccCCCccEEEEeCC---------hhh--------------------------CHHHHHHHHHHhCCCcEEEEeecc
Confidence 544 22478999999986 111 246788888888887666664444
Q ss_pred Cc
Q 019692 281 HQ 282 (337)
Q Consensus 281 ~~ 282 (337)
.+
T Consensus 169 ~~ 170 (219)
T COG4122 169 FG 170 (219)
T ss_pred cC
Confidence 43
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-10 Score=106.25 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+++.+|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..|+. +|+++.+|+.+++..+ +.||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEE
Confidence 678999999999999999999875 469999999999999999999988874 6999999998876443 5799998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+. . ++..-+| ..+++.++.+.+++ |.++.+++
T Consensus 192 s~----~--~~~h~~d--------------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SM----E--SGEHMPD--------------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EC----C--chhccCC--------------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 62 1 1111111 13677888888887 77777664
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.9e-10 Score=96.83 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=78.6
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-----CCCC
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-----KDPA 206 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~-----~~~~ 206 (337)
...+++|++|||+|||+|+.+..++....+.++|+++|+++.+ +..++.++++|+.+... ....
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 3456789999999999999999999887666799999999864 23468888888876421 0001
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
.++||+|++|+++...|.+. ...... ...+..+|..+.+++++ |.++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~--------------------~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWD--------------------IDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCcc--------------------ccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 24799999997654344321 111111 23477889999998887 666653
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=99.59 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=82.2
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~ 203 (337)
...++...|++.||.+|++.|+|+|+.+.+++..+++.|+++.+|.++.+.+.+.+..++.|+. ||++++-|.......
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 3456677789999999999999999999999999999999999999999999999999999984 699999998766544
Q ss_pred CCCCCCccEEEECCC
Q 019692 204 DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ~~~~~~fD~IlvDpP 218 (337)
.. ...+|.|++|.|
T Consensus 173 ~k-s~~aDaVFLDlP 186 (314)
T KOG2915|consen 173 IK-SLKADAVFLDLP 186 (314)
T ss_pred cc-ccccceEEEcCC
Confidence 32 368999999999
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=96.66 Aligned_cols=83 Identities=24% Similarity=0.151 Sum_probs=69.4
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
+..+...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..++.+|++...|+.+.+..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 93 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-- 93 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC--
Confidence 344455566677899999999999999999885 368999999999999999999999988899999998766432
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
..||.|++
T Consensus 94 --~~fD~I~~ 101 (197)
T PRK11207 94 --GEYDFILS 101 (197)
T ss_pred --CCcCEEEE
Confidence 46999995
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=96.91 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------KDPAYS 208 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~------~~~~~~ 208 (337)
.++|.+|||+|||||..+..+++..++.+.|+|+|+++ + .+..+|+++++|+.+... .. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~-~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERV-GDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHh-CCC
Confidence 46789999999999999999999887778999999988 1 234569999999987531 01 125
Q ss_pred CccEEEECC-C-CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 209 EVRAILLDP-S-CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 209 ~fD~IlvDp-P-CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
+||+|++|+ | ++|.. ..+......+...+|..+.+++++ |.++.
T Consensus 117 ~~D~V~S~~~~~~~g~~-----------------------~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTP-----------------------AVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCEEecCCCCccCCCh-----------------------HHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 799999986 3 22210 011112222346789999998887 66665
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=105.44 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=94.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+....+..+||+|||+|..++++|... +...++|+|+++.++..+.+++.+.|+.||.++++|+..+....+ .+++|.
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~-~~s~D~ 195 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP-SNSVEK 195 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-CCceeE
Confidence 344567799999999999999999985 568999999999999999999999999999999999876532222 367999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV 283 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ 283 (337)
|++.-|+- |+. ++..++ .|..+|..+.+.+++ |.+...|.+....
T Consensus 196 I~lnFPdP------------W~K------------krHRRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 196 IFVHFPVP------------WDK------------KPHRRV--ISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred EEEeCCCC------------ccc------------cchhhc--cHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 99977632 111 001222 267889999998886 8888888764433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-10 Score=95.18 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=68.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-.|.+|||++||+|..++..++ ++..+++.+|.|...++.+++|++.+++. ++.++..|+..+.........||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 4699999999999988877665 46789999999999999999999999964 58899999885533332223599999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||.-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999954
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=105.44 Aligned_cols=92 Identities=27% Similarity=0.386 Sum_probs=77.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AY 207 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~ 207 (337)
+...+.+++|+.++|++||.|+.|..+++.+++.++|+|+|.|+.+++.++++++. .++++++++|+.++..... ..
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 34556788999999999999999999999986679999999999999999998876 4679999999988753322 12
Q ss_pred CCccEEEECCCCCCc
Q 019692 208 SEVRAILLDPSCSGS 222 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~ 222 (337)
.+||.|++|.-+|..
T Consensus 89 ~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 89 GKVDGILLDLGVSSP 103 (296)
T ss_pred CccCEEEECCCcccc
Confidence 379999999998854
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-10 Score=99.21 Aligned_cols=81 Identities=30% Similarity=0.427 Sum_probs=60.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+++|+.|+|++||.|.+++.+|.. +....|+|+|+++..++.+++|++.+++.+ |.++++|+..+.. ...||.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEE
Confidence 578999999999999999999985 345789999999999999999999999976 8999999998875 2679999
Q ss_pred EECCCCC
Q 019692 214 LLDPSCS 220 (337)
Q Consensus 214 lvDpPCS 220 (337)
+++.|-+
T Consensus 174 im~lp~~ 180 (200)
T PF02475_consen 174 IMNLPES 180 (200)
T ss_dssp EE--TSS
T ss_pred EECChHH
Confidence 9999944
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=98.74 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=94.8
Q ss_pred hhhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019692 124 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 200 (337)
Q Consensus 124 ~ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~ 200 (337)
+...+...+++ .++|.+|||+|||+|-.++.++.+ +..+|+|+|+|+-+++.+++|++++++.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 34455555554 468999999999999888877775 56789999999999999999999999875 22222222222
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ ..++||+|+++- |++.-.++...+..++++ |+++.|=
T Consensus 225 ~----~~~~~DvIVANI-----------------------------------LA~vl~~La~~~~~~lkpgg~lIlSG-- 263 (300)
T COG2264 225 P----ENGPFDVIVANI-----------------------------------LAEVLVELAPDIKRLLKPGGRLILSG-- 263 (300)
T ss_pred c----ccCcccEEEehh-----------------------------------hHHHHHHHHHHHHHHcCCCceEEEEe--
Confidence 2 125899999752 344445777777777776 8888875
Q ss_pred CCcccCHHHHHHHhchhcCCCcEEec
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
|..+. ++.|...+. ..||++++
T Consensus 264 Il~~q-~~~V~~a~~---~~gf~v~~ 285 (300)
T COG2264 264 ILEDQ-AESVAEAYE---QAGFEVVE 285 (300)
T ss_pred ehHhH-HHHHHHHHH---hCCCeEeE
Confidence 55555 555555552 45788864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=97.55 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=88.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|. .++.++++|+..... ..+||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc----cCCccEEE
Confidence 478999999999999999988642 3468999999999999999875 347889999876542 14799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEE---------EEcCCCC-ccc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV---------YSTCSIH-QVE 284 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lv---------YsTCS~~-~~E 284 (337)
.+||..-.+. .+. .. + ..-...-..+++.|.+++++|.+| ||-|-.. .+|
T Consensus 120 sNPPY~~~~~----~d~---~a------r-------~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~ 179 (241)
T PHA03412 120 SNPPFGKIKT----SDF---KG------K-------YTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDE 179 (241)
T ss_pred ECCCCCCccc----ccc---CC------c-------ccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeecc
Confidence 9999765431 010 00 0 001234567888888877776554 6666544 244
Q ss_pred C--HHHHHHHhc
Q 019692 285 N--EDVIKSVLP 294 (337)
Q Consensus 285 N--e~vv~~~l~ 294 (337)
| -.-+.+|++
T Consensus 180 ~~~~~~~~~~~~ 191 (241)
T PHA03412 180 STTSSKCKKFLD 191 (241)
T ss_pred CcccHHHHHHHH
Confidence 4 344556663
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=95.75 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+...++.+|||+|||+|..+..+++. ...|+|+|+++.+++.++++++..|++ +.+...|....+..
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~--- 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN--- 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc---
Confidence 34445566666789999999999999999874 369999999999999999999888875 77777887654321
Q ss_pred CCCccEEEECCC
Q 019692 207 YSEVRAILLDPS 218 (337)
Q Consensus 207 ~~~fD~IlvDpP 218 (337)
.+||.|++..+
T Consensus 93 -~~fD~I~~~~~ 103 (195)
T TIGR00477 93 -EDYDFIFSTVV 103 (195)
T ss_pred -CCCCEEEEecc
Confidence 46999996544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=95.38 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+....+.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ .+++++++|+.++.. ..+||+
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----~~kFDl 129 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----NEKFDV 129 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----cCCCcE
Confidence 3455678999999999999988877642 368999999999999998863 368899999987652 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHH-----------HHHHHHHHhCCCCC-c--EEEEEcC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----------QKKALRHALSFPGV-E--RVVYSTC 278 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-----------Q~~lL~~A~~~~~~-G--~lvYsTC 278 (337)
|++|||......-.+ ...... -.+.+.....++++ | .++|++-
T Consensus 130 IIsNPPF~~l~~~d~-----------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 130 VISNPPFGKINTTDT-----------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEcCCccccCchhh-----------------------hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999999664332111 111111 13556666667766 5 4568774
Q ss_pred CC-CcccCHHHHHHHhchhcCCCcEEec
Q 019692 279 SI-HQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 279 S~-~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
-+ |.--..+-..++|+ ..||...+
T Consensus 187 ~~y~~sl~~~~y~~~l~---~~g~~~~~ 211 (279)
T PHA03411 187 PYYDGTMKSNKYLKWSK---QTGLVTYA 211 (279)
T ss_pred ccccccCCHHHHHHHHH---hcCcEecC
Confidence 44 44445666667774 44666643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=108.26 Aligned_cols=125 Identities=10% Similarity=0.121 Sum_probs=86.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+. +|.++.+|+.+... ..+||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEE
Confidence 35689999999999999998875 4579999999999999999999999875 59999999764321 247999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
|||.....-.. +. .++. .++.....+ ..--+..+.++..+.+++++ |.++.
T Consensus 213 NPPYi~~~~~~---~l-~~~v-----~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKS---EM-AIET-----INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhh---hc-Cchh-----hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 99977653211 00 0000 000000000 01224567889999998887 66654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=98.03 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~Il 214 (337)
+|.+|||+|||+|..++.+++. +..+|+++|.++..++.+++|++.+++. +++++++|+....... .....||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999888775 4468999999999999999999999986 6999999985542211 1112489999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999964
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-09 Score=94.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=80.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++|++.+++. .+.+..+| .+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467999999999999888876653 3457999999999999999999998873 34443332 159999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
+++... .....++..+.+++++ |.++.|... . +..+-+...
T Consensus 184 vani~~-----------------------------------~~~~~l~~~~~~~LkpgG~lilsgi~--~-~~~~~v~~~ 225 (250)
T PRK00517 184 VANILA-----------------------------------NPLLELAPDLARLLKPGGRLILSGIL--E-EQADEVLEA 225 (250)
T ss_pred EEcCcH-----------------------------------HHHHHHHHHHHHhcCCCcEEEEEECc--H-hhHHHHHHH
Confidence 976320 0123567788888876 888876443 2 233334444
Q ss_pred hchhcCCCcEEec
Q 019692 293 LPIAMSFGFQLAT 305 (337)
Q Consensus 293 l~~~~~~~~~~~~ 305 (337)
+ .+.||++..
T Consensus 226 l---~~~Gf~~~~ 235 (250)
T PRK00517 226 Y---EEAGFTLDE 235 (250)
T ss_pred H---HHCCCEEEE
Confidence 4 245777653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=93.15 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=70.5
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. ..+++++++|+.+++... .
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~---~ 76 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK---L 76 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---c
Confidence 455667788999999999999999999886 36899999999999999999864 357999999999886432 3
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.||.|+.|+|.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 68999999994
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-10 Score=98.96 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=59.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-CCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-PAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-~~~~~fD~Il 214 (337)
+|.+|||+|||+|..++...+ ++..+|+.||.++..++.+++|++..++.+ ++++..|+....... ....+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 689999999999988887655 467899999999999999999999999876 999999965443211 0126799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||.-
T Consensus 120 lDPPY~ 125 (183)
T PF03602_consen 120 LDPPYA 125 (183)
T ss_dssp E--STT
T ss_pred ECCCcc
Confidence 999943
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-09 Score=96.57 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=85.1
Q ss_pred hhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019692 125 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 201 (337)
Q Consensus 125 ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~ 201 (337)
...+...++. ..+|.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|++.+++.+ +.+...|.....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~ 222 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI 222 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc
Confidence 3444444433 457899999999999998877764 34699999999999999999999998864 666666532211
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||+|+++.... ....++..+.+++++ |.++.|..
T Consensus 223 -----~~~fDlVvan~~~~-----------------------------------~l~~ll~~~~~~LkpgG~li~sgi-- 260 (288)
T TIGR00406 223 -----EGKADVIVANILAE-----------------------------------VIKELYPQFSRLVKPGGWLILSGI-- 260 (288)
T ss_pred -----CCCceEEEEecCHH-----------------------------------HHHHHHHHHHHHcCCCcEEEEEeC--
Confidence 25799999874310 013567777787776 78877653
Q ss_pred CcccCHHHHHHHh
Q 019692 281 HQVENEDVIKSVL 293 (337)
Q Consensus 281 ~~~ENe~vv~~~l 293 (337)
.. +..+.|...+
T Consensus 261 ~~-~~~~~v~~~~ 272 (288)
T TIGR00406 261 LE-TQAQSVCDAY 272 (288)
T ss_pred cH-hHHHHHHHHH
Confidence 22 3334444444
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-10 Score=101.70 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC--
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK-- 203 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~-- 203 (337)
++...++......+||++|+++|+.|++||..+.++++|+++|+++++.+.+++++++.|+. +|+++.+|+.+..+.
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 34444443445669999999999999999999888899999999999999999999999985 599999998764322
Q ss_pred -CCCCCCccEEEECCC
Q 019692 204 -DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 -~~~~~~fD~IlvDpP 218 (337)
....++||.||+|+.
T Consensus 115 ~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HTTTTTSEEEEEEEST
T ss_pred hccCCCceeEEEEccc
Confidence 111257999999987
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=95.59 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=82.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++.+|||+|||+|..+..++..+ .+..+|+++|+|+.|++.++++++.++.. +|+++++|+.+++. ..+|.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence 3578899999999999998888764 35689999999999999999999988875 59999999887652 34788
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
|++.-. +. . ..+ ..+..++++..+.+++ |.++.+..
T Consensus 129 vv~~~~------l~-~----------------l~~-------~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFT------LQ-F----------------LEP-------SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhH------HH-h----------------CCH-------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 874311 10 0 001 1135788888888887 78777763
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-08 Score=93.14 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=79.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~ 208 (337)
...+.+..|.+|||+|||+|..+..++.. +...|+|+|.++.++...+...+..+. .+|.++.+|+.+++. . .
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~---~ 188 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L---K 188 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---C
Confidence 44555567899999999999999999886 345799999999988765554443332 469999999988865 2 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+||.|++ . |++....| ...+|+++.+.+++ |.+|.+|-
T Consensus 189 ~FD~V~s----~--~vl~H~~d--------------------------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFS----M--GVLYHRRS--------------------------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEE----C--ChhhccCC--------------------------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 7999994 2 34432111 13568888887776 88887653
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=97.72 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
-+|.+|||+|||-|..+..||+. +..|+|+|++++.++.++..+...|+. |...+...+++.... ++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEE
Confidence 46999999999999999999986 389999999999999999999998876 667666666665332 68999995
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
- -++-+-|| -..++++..++++| |.++.||=.
T Consensus 131 m------EVlEHv~d--------------------------p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 M------EVLEHVPD--------------------------PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred h------hHHHccCC--------------------------HHHHHHHHHHHcCCCcEEEEeccc
Confidence 1 12222111 13589999999998 888888754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=93.05 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=68.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
.|..-+......+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++. .++.++.+|+..+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 344444444555667889999999999999999999875 4579999999999999998763 4688999998766
Q ss_pred CCCCCCCCCccEEEECCC
Q 019692 201 DPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpP 218 (337)
.+. .+||+|+++..
T Consensus 89 ~~~----~~fD~v~~~~~ 102 (258)
T PRK01683 89 QPP----QALDLIFANAS 102 (258)
T ss_pred CCC----CCccEEEEccC
Confidence 432 47999997653
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-09 Score=97.03 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=84.2
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
+|...+..+...+...++.+|||+|||+|..+..++.. ...|+++|+++.+++.++++.. .+.++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 57777777777776667889999999999998888763 3789999999999999887742 246788998877
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+..+ ++||+|+++.+ +..-+ -...+|.++.+.+++ |.++++|
T Consensus 98 ~~~~---~~fD~V~s~~~------l~~~~--------------------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 98 PLAT---ATFDLAWSNLA------VQWCG--------------------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cCCC---CcEEEEEECch------hhhcC--------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 57999996543 11000 024678888888887 7787775
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=90.42 Aligned_cols=114 Identities=25% Similarity=0.239 Sum_probs=84.9
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+...|+...+... ..
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~~ 87 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---GS 87 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---CC
Confidence 4456778899999999999999999999875668999999999999999988332 2356999999987765332 57
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
||.|+++-. +..-+ -+..+++++.+++++ |.++.+.+.
T Consensus 88 ~D~v~~~~~------~~~~~--------------------------~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRV------LQHLE--------------------------DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEech------hhccC--------------------------CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999997532 11000 024567777777776 888877654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=96.82 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=64.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+ .+++++++|+.++.... .++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEE
Confidence 45789999999999999999885 36899999999999999999999887 46999999988764322 25799999
Q ss_pred EC
Q 019692 215 LD 216 (337)
Q Consensus 215 vD 216 (337)
+.
T Consensus 118 ~~ 119 (255)
T PRK11036 118 FH 119 (255)
T ss_pred eh
Confidence 64
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=95.67 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=63.1
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+...+...++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++ +++++++|+.++.+ ..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~----~~ 88 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP----KP 88 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC----CC
Confidence 3445667789999999999999999999875 457999999999999988653 47788999887642 25
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
+||+|++...
T Consensus 89 ~fD~v~~~~~ 98 (255)
T PRK14103 89 DTDVVVSNAA 98 (255)
T ss_pred CceEEEEehh
Confidence 7999998654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=93.62 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=79.9
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++..-+..+ ..++.+...++.+++.. ..|
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~F 189 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YAF 189 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CCc
Confidence 345677999999999999998888765 34589999999999877544333322 24578888888777642 469
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
|.|++ + |++...++ + ...|++..+.+++ |.||.+|..+...+
T Consensus 190 D~V~s----~--gvL~H~~d----------------p----------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 190 DTVFS----M--GVLYHRKS----------------P----------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred CEEEE----c--chhhccCC----------------H----------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 99994 3 34432211 1 3567888887776 88888876554443
|
Known examples to date are restricted to the proteobacteria. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=99.34 Aligned_cols=105 Identities=24% Similarity=0.306 Sum_probs=83.4
Q ss_pred CCchhhhcCeEEEechhhHHHH--------HHh-CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Q 019692 109 HVHPLIVNGCVFLQGKASSMVA--------AAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss~l~~--------~~l-~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~ 179 (337)
..+-.-.+|..+-.|.+..+.. ..+ ...+|++|+||+||-|.+|+.+|..- ..+|+|+|+|+..++.++
T Consensus 151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 151 TETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLK 228 (341)
T ss_pred ceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHH
Confidence 3444456777777776643321 111 23569999999999999999999973 344999999999999999
Q ss_pred HHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 180 DTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 180 ~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|++.+++.+ |.++++|+..+.+.. ..+|.|++.-|
T Consensus 229 eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIim~~p 265 (341)
T COG2520 229 ENIRLNKVEGRVEPILGDAREVAPEL---GVADRIIMGLP 265 (341)
T ss_pred HHHHhcCccceeeEEeccHHHhhhcc---ccCCEEEeCCC
Confidence 9999999988 999999999987653 57999999877
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=94.27 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=88.9
Q ss_pred hhcCeEEEech-hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 114 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 114 ~~~G~~~~Qd~-ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
|-.|++..... ....+...+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.++++... ..+|.+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~ 103 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF 103 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence 34455555432 23444555778899999999999999998888753 46999999999999999988754 246999
Q ss_pred EeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-c
Q 019692 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-E 271 (337)
Q Consensus 193 ~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G 271 (337)
+.+|+...+..+ ++||+|++-.-.... +. .-...+|+++.+++++ |
T Consensus 104 ~~~D~~~~~~~~---~~FD~V~s~~~l~h~-----------------------~~-------~d~~~~l~~i~r~LkPGG 150 (263)
T PTZ00098 104 EANDILKKDFPE---NTFDMIYSRDAILHL-----------------------SY-------ADKKKLFEKCYKWLKPNG 150 (263)
T ss_pred EECCcccCCCCC---CCeEEEEEhhhHHhC-----------------------CH-------HHHHHHHHHHHHHcCCCc
Confidence 999988654332 579999962110000 00 1135788999998887 7
Q ss_pred EEEEEc
Q 019692 272 RVVYST 277 (337)
Q Consensus 272 ~lvYsT 277 (337)
.++.+.
T Consensus 151 ~lvi~d 156 (263)
T PTZ00098 151 ILLITD 156 (263)
T ss_pred EEEEEE
Confidence 766553
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=97.71 Aligned_cols=94 Identities=26% Similarity=0.261 Sum_probs=77.9
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~ 199 (337)
.+......++..+.+.++++|||+|||+|..|..++.. ..+|+|+|+|+.+++.+++++...+ ..+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 33344455666778889999999999999999999886 3689999999999999999998877 4679999999987
Q ss_pred CCCCCCCCCCccEEEECCCCCCc
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+. ..||.|+.++|...+
T Consensus 97 ~~~-----~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 97 TEF-----PYFDVCVANVPYQIS 114 (294)
T ss_pred hcc-----cccCEEEecCCcccC
Confidence 642 458999999998754
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=95.99 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=91.6
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 202 (337)
..-.++...+.++||++|||+|||-|+.+..+|+.. +.+|+|+++|++..+.++++++..|+. +|++...|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 334455667889999999999999999999999986 479999999999999999999999997 7999999988775
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+.||.|+ +.|++-.- .. +.-...++.+.+.+++ |.++--|-+
T Consensus 136 -----e~fDrIv------SvgmfEhv-----------------g~-------~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 -----EPFDRIV------SVGMFEHV-----------------GK-------ENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -----cccceee------ehhhHHHh-----------------Cc-------ccHHHHHHHHHhhcCCCceEEEEEec
Confidence 3499998 46665210 01 1124678888887776 766554433
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-08 Score=89.37 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=69.2
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 206 (337)
.....+...++.+|||+|||+|..+..++.......+++++|+++.+++.+++++...+. .++.++.+|+.+.+..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--- 118 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP--- 118 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC---
Confidence 344556667889999999999999999998864358999999999999999999887655 3589999999876532
Q ss_pred CCCccEEEE
Q 019692 207 YSEVRAILL 215 (337)
Q Consensus 207 ~~~fD~Ilv 215 (337)
...||+|++
T Consensus 119 ~~~~D~I~~ 127 (239)
T PRK00216 119 DNSFDAVTI 127 (239)
T ss_pred CCCccEEEE
Confidence 257999985
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=108.58 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=105.6
Q ss_pred CeEEEechhhHHHHHHhCCC-----CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC----
Q 019692 117 GCVFLQGKASSMVAAALAPK-----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---- 187 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~-----~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---- 187 (337)
|-++..+.+-.++-. +... ++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+++
T Consensus 94 ~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~ 171 (1082)
T PLN02672 94 SIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDG 171 (1082)
T ss_pred CcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCccccc
Confidence 445555555555444 4322 24689999999999999999875 346999999999999999999998753
Q ss_pred ------------CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCc-ccCccCCCCCCCCCCCcccHHHH----
Q 019692 188 ------------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---- 250 (337)
Q Consensus 188 ------------~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~-~~d~~~~~~~~~~~~~~~~~~~~---- 250 (337)
++|+++++|..+..... ..+||+|+.+||.=..+-... .++.+-.+ +.....+......+
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~e-p~~~~~~~~p~~AL~g~~ 248 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENA-SEEFLYSLSNYCALQGFV 248 (1082)
T ss_pred ccccccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhcc-ccccccccCccccccCCC
Confidence 36999999987654221 136999999999654432110 00110000 00000000000000
Q ss_pred --HHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 251 --NKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 251 --~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
..--.+.++|+..|.+++++|..++ |-+.....+.|.+++++
T Consensus 249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~--lEiG~~q~~~v~~~l~~ 292 (1082)
T PLN02672 249 EDQFGLGLIARAVEEGISVIKPMGIMI--FNMGGRPGQAVCERLFE 292 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEE--EEECccHHHHHHHHHHH
Confidence 1234566889999999888744444 45556666666655664
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-09 Score=98.12 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.+|.+|||+|||+|..+..++.. .+.|+++|.++++++.++++++..+. .+|+++++|+.+++... ++||+|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~V 202 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAV 202 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEE
Confidence 457889999999999999988863 46999999999999999988776554 46999999998876432 579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 203 i~ 204 (322)
T PLN02396 203 LS 204 (322)
T ss_pred EE
Confidence 85
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-09 Score=93.86 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=79.3
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD 201 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~ 201 (337)
....++...++......+||++|++.|+.|+.||..+.+.++|+++|.++++.+.+++++++.|+. +|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 455566666666666779999999999999999998877899999999999999999999999975 5999999987754
Q ss_pred CCCC----CCCCccEEEECCC
Q 019692 202 PKDP----AYSEVRAILLDPS 218 (337)
Q Consensus 202 ~~~~----~~~~fD~IlvDpP 218 (337)
+... ..++||+||+|+-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3310 0257999999976
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-09 Score=90.18 Aligned_cols=141 Identities=23% Similarity=0.226 Sum_probs=99.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~~~~ 209 (337)
+++|..|+|+||+||+++..+++.++.+++|+|+|+.+-.. +.+|.++++|++.-... ......
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999998888999999987442 45699999999875421 111234
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
+|+|++|+----+|... .+......+-...++-|...+++ |..| |.....++++.
T Consensus 112 ~DvV~sD~ap~~~g~~~---------------------~Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~ 167 (205)
T COG0293 112 VDVVLSDMAPNTSGNRS---------------------VDHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFED 167 (205)
T ss_pred cceEEecCCCCcCCCcc---------------------ccHHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHH
Confidence 79999998765555431 12233444455667777777776 7666 67778888777
Q ss_pred HHHHhchhcCCCcEEecCCCCCCcch
Q 019692 289 IKSVLPIAMSFGFQLATPFPNGTAEA 314 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (337)
+-+.+. ..|+.+....+|.+|.
T Consensus 168 ~l~~~~----~~F~~v~~~KP~aSR~ 189 (205)
T COG0293 168 LLKALR----RLFRKVKIFKPKASRK 189 (205)
T ss_pred HHHHHH----HhhceeEEecCccccC
Confidence 766663 2466655556665544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-09 Score=95.89 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=83.6
Q ss_pred hhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019692 125 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 201 (337)
Q Consensus 125 ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~ 201 (337)
+..++..++. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+|+..++.+++|++.+|+.. +.+ ....+..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~ 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc
Confidence 3455555543 567999999999999888766664 56799999999999999999999999976 433 2222211
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
..+||+|+.+-= +..-..++....+++++ |.++. |-
T Consensus 223 -----~~~~dlvvANI~-----------------------------------~~vL~~l~~~~~~~l~~~G~lIl---SG 259 (295)
T PF06325_consen 223 -----EGKFDLVVANIL-----------------------------------ADVLLELAPDIASLLKPGGYLIL---SG 259 (295)
T ss_dssp -----CS-EEEEEEES------------------------------------HHHHHHHHHHCHHHEEEEEEEEE---EE
T ss_pred -----cccCCEEEECCC-----------------------------------HHHHHHHHHHHHHhhCCCCEEEE---cc
Confidence 267999997521 12223455555556665 78875 44
Q ss_pred CcccCHHHHHHHhchhcCCCcEEec
Q 019692 281 HQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 281 ~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
...+..+.|...++ . ||++..
T Consensus 260 Il~~~~~~v~~a~~---~-g~~~~~ 280 (295)
T PF06325_consen 260 ILEEQEDEVIEAYK---Q-GFELVE 280 (295)
T ss_dssp EEGGGHHHHHHHHH---T-TEEEEE
T ss_pred ccHHHHHHHHHHHH---C-CCEEEE
Confidence 44445455555552 3 788754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=90.10 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=76.6
Q ss_pred hHHHHHHhCCCCCC--eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 019692 126 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH 194 (337)
Q Consensus 126 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~------g~---~~v~~~~ 194 (337)
...++.++.+++|. +|||++||.|..++.++.+ +++|+++|.++.....+++++++. +. .++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778889999999 9999999999999999987 467999999999999999999985 32 5699999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
+|+..+..... ..||+|++|||..
T Consensus 152 ~da~~~L~~~~--~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDIT--PRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCC--CCCcEEEECCCCC
Confidence 99887765432 3699999999954
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=91.95 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=80.7
Q ss_pred CCCeEEeecCCchhHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIKL-SGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~-la~~~~~~g~V~avD~~~~~l~~l~~~~~~-~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
++.+|+|+|||+|+.|.. +++...++++++++|+|+++++.+++.+++ .|+.+ |+|..+|+.+.... .+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---LKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc---cCCcCEE
Confidence 678999999999976544 454556778999999999999999999965 78865 99999999876432 2579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+++ -+- +.- ...+.++|++..+.+++ |.+++-+
T Consensus 200 F~~-ALi--~~d----------------------------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALV--GMD----------------------------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-ccc--ccc----------------------------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 211 110 01136789999887776 7777765
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=94.05 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=74.2
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
+.......++..+++.++++|||+|||+|..|..+++. ..+|+++|+++.+++.++++++. ..+++++++|+..+
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 33344455666677888999999999999999999987 36899999999999999988865 46799999999876
Q ss_pred CCCCCCCCCccEEEECCCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCS 220 (337)
+. ..||.|+.++|..
T Consensus 88 ~~-----~~~d~Vv~NlPy~ 102 (258)
T PRK14896 88 DL-----PEFNKVVSNLPYQ 102 (258)
T ss_pred Cc-----hhceEEEEcCCcc
Confidence 52 3479999999965
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-09 Score=82.82 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=58.2
Q ss_pred EEeecCCchhHHHHHHHHc--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 141 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~--~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
|||+|||+|..+..++... ++..+++++|+|+.+++.++++.+..+. +++++++|+.+++... ++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~---~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD---GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS---SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC---CCeeEEEE
Confidence 7999999999999999986 2237999999999999999999988777 6999999999876433 58999995
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=87.37 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=98.7
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.+ +.+++|.+||-+|+++|..-.|++..++..|.|+|+|.+++..+.+-..+++. +||..+.+|++.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 5566555 34678999999999999999999999998999999999999999998888775 689999999997
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH-HHHhCCCCC-cEEEEE-
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL-RHALSFPGV-ERVVYS- 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL-~~A~~~~~~-G~lvYs- 276 (337)
......-.+.+|+|+.|.. -|| |.+|+ .+|-.||+. |.++.+
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp~--------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QPD--------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------STT--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhcccccccEEEecCC---------ChH--------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 7655444568999999987 222 44554 455457776 765544
Q ss_pred -cCCCCc-ccCHHHHHHHhchhcCCCcEEec
Q 019692 277 -TCSIHQ-VENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 277 -TCS~~~-~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
+-|+.. ...+.+.+..++.-+..+|++..
T Consensus 179 Ka~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 179 KARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 234443 45566666666544455677643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=76.62 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=78.0
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|+|||+|..+..++. .+..+++++|.++..+..+++.....+..++.++..|+.+..... ..+||+|+++++|
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA--DESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc--CCceEEEEEccce
Confidence 489999999999988877 346799999999999999987555555567999999988776411 3579999999997
Q ss_pred CCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 220 Sg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
... ...+..+++.+.+.+++ |.++++
T Consensus 77 ~~~-------------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-------------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 642 12245777887777776 666654
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=97.17 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=83.0
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
++..+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.++++....+ .++++..+|+...+... +
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~---~ 331 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD---N 331 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---C
Confidence 4444567788999999999999999998865 4689999999999999998876433 35999999988765332 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+||+|++. +++..-+| ...+|..+.+++++ |.++.++-.
T Consensus 332 ~fD~I~s~------~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 332 SFDVIYSR------DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CEEEEEEC------CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 79999963 12211110 14678888888887 777766533
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=90.99 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||.|..+..++... +..+|+++|+++.+++.+++++...+. ++++++.+|+.++....+ .+||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEE
Confidence 3456799999999999999998876 568999999999999999998865543 579999999876643322 579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++|+- .+.++ |.. -...++++.+.+.+++ |.++.-..+
T Consensus 141 ~~D~~-~~~~~----~~~-----------------------l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 141 LVDGF-DGEGI----IDA-----------------------LCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred EEeCC-CCCCC----ccc-----------------------cCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99963 22221 110 0025778888888877 776654333
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-08 Score=91.69 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.++++++..++ ++++...|+..... .++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----cCCccEEEE
Confidence 34569999999999999999885 37999999999999999999999888 78888888876543 257999996
Q ss_pred CC
Q 019692 216 DP 217 (337)
Q Consensus 216 Dp 217 (337)
-.
T Consensus 191 ~~ 192 (287)
T PRK12335 191 TV 192 (287)
T ss_pred cc
Confidence 54
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=89.30 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=63.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++.+|||+|||+|..+..+++.+. +..+|+++|+++.+++.++++++..+. .+++++++|+..++. ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence 35788999999999999999988753 468999999999999999999988764 369999999987753 34787
Q ss_pred EEE
Q 019692 213 ILL 215 (337)
Q Consensus 213 Ilv 215 (337)
|++
T Consensus 126 v~~ 128 (239)
T TIGR00740 126 VIL 128 (239)
T ss_pred Eee
Confidence 774
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=94.31 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=62.5
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
-..++..+++++|++|||+|||.|+.+..+|+.. +.+|+++.+|+...+.+++.+++.|+.+ |++...|..+++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3455666889999999999999999999999986 4799999999999999999999999865 999999988765
Q ss_pred CCCCCccEEEE
Q 019692 205 PAYSEVRAILL 215 (337)
Q Consensus 205 ~~~~~fD~Ilv 215 (337)
.+||.|+.
T Consensus 126 ---~~fD~IvS 133 (273)
T PF02353_consen 126 ---GKFDRIVS 133 (273)
T ss_dssp ----S-SEEEE
T ss_pred ---CCCCEEEE
Confidence 37999984
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-09 Score=96.34 Aligned_cols=184 Identities=20% Similarity=0.239 Sum_probs=125.2
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEe
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAAN--IEVLH 194 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~-------~l~~~~~~~g~~~--v~~~~ 194 (337)
+=|.+.+....++||+.|+|-+.|||+.-...|.. ++.|+|.|||-.+++ ..+.|++++|... +.++.
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 34667788888999999999999999877666654 479999999999887 4688999999654 78899
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCC---CccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCS---GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V 270 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCS---g~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~ 270 (337)
+|+.+.+.... ..||.|+||||.- |.-...++--.+-++. ....+.........+..+--++|.-+.+.+. +
T Consensus 272 ~D~sn~~~rsn--~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~--~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~g 347 (421)
T KOG2671|consen 272 ADFSNPPLRSN--LKFDAIVCDPPYGVREGARKTGKKKSVRTTEE--SSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDG 347 (421)
T ss_pred ecccCcchhhc--ceeeEEEeCCCcchhhhhhhhcccCcccCccc--ccccccCCccchhHHHHHHhhHHHhhHhhhhcC
Confidence 99998776542 5799999999952 1100000000000000 0001112334555677777789999988655 5
Q ss_pred cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe----cCCCCCCcchhhcccc
Q 019692 271 ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA----TPFPNGTAEASQFLKA 320 (337)
Q Consensus 271 G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 320 (337)
|++|+ +.|.-+|+.....+. .++.+++. .++..|.++-....++
T Consensus 348 grlv~----w~p~~~e~~~~~~~P--~h~~lsl~~ns~q~~~~~srrllt~~k~ 395 (421)
T KOG2671|consen 348 GRLVF----WLPTITEEYGEDDIP--SHPYLSLIYNSEQPFTHWSRRLLTYQKL 395 (421)
T ss_pred ceEEE----ecCchhhccCcccCC--CCcchhhhhhhccccchhhhhheeeeec
Confidence 99997 666777777666553 45556653 4577888888776555
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=93.47 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=71.1
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
-...+...+++.++++|||+|||+|..|..++... .+|+|+|+|+.+++.+++++.. .+++++++|+.+++...
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 34455566778899999999999999999999873 4899999999999999987742 57999999999875332
Q ss_pred CCCCCccEEEECCCCCC
Q 019692 205 PAYSEVRAILLDPSCSG 221 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg 221 (337)
. .+|.|+.+||..-
T Consensus 104 --~-~~~~vv~NlPY~i 117 (272)
T PRK00274 104 --L-QPLKVVANLPYNI 117 (272)
T ss_pred --c-CcceEEEeCCccc
Confidence 1 1589999999643
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-08 Score=94.92 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=64.0
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+.+++|.+|||+|||+|+.+..+++.. +.+|+++|+|+++++.++++++ +. ++++...|...+.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~----- 226 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLN----- 226 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcC-----
Confidence 345566778899999999999999999998875 3689999999999999999885 33 3788888876541
Q ss_pred CCCccEEEE
Q 019692 207 YSEVRAILL 215 (337)
Q Consensus 207 ~~~fD~Ilv 215 (337)
++||.|++
T Consensus 227 -~~fD~Ivs 234 (383)
T PRK11705 227 -GQFDRIVS 234 (383)
T ss_pred -CCCCEEEE
Confidence 56999985
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-09 Score=87.30 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
-+|..++|+|||.|..+++. .+.....|+++|+++.+++...+|++.+.+. +.++++|..+..+.. +.||.+++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~---g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG---GIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC---CeEeeEEe
Confidence 46899999999999887443 3345578999999999999999999998875 689999988876553 67999999
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
|||
T Consensus 121 Npp 123 (185)
T KOG3420|consen 121 NPP 123 (185)
T ss_pred cCC
Confidence 999
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-08 Score=84.54 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..++..-++.++||+|||.|..++.+|+. +..|+|+|+|+..++.+++.+++.+++ |+....|..+.... ..
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~----~~ 94 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP----EE 94 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T----TT
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc----CC
Confidence 34556667789999999999999999996 468999999999999999999998887 99999998876543 46
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
||+|+.
T Consensus 95 yD~I~s 100 (192)
T PF03848_consen 95 YDFIVS 100 (192)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 999985
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=93.18 Aligned_cols=108 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHc------CCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~------~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..|.++-...-+.+++.++.+.++++|+|.|||+|++...+...+ .....++|+|+++..+..++-|+.-.|+.
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp SCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred ccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 347777777788899999999999999999999999988877754 24578999999999999999988777653
Q ss_pred --cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCcc
Q 019692 189 --NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 189 --~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G 223 (337)
+..+..+|....+... ...+||+|+.+||....+
T Consensus 104 ~~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp CBGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred cccccccccccccccccc-cccccccccCCCCccccc
Confidence 3468888876554332 135899999999988763
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=88.73 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=92.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC--CCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN--LDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~--~~~~~~~~~~fD~I 213 (337)
.+..+||+|||+|..++.++..+. .+.|+|+|.++.++..+.+|++++++.+ +.+++.+.+. ..+.....+++|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 466899999999999999999886 6899999999999999999999999866 7777553322 11111124789999
Q ss_pred EECCCCCCccccC-cccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 214 LLDPSCSGSGTAA-ERLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 214 lvDpPCSg~G~~~-~~~d~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
+++||.-..-=++ -.|+.+. +..+-.+. +--+.-..+..-|-+++++ |.+.+.+-- ..+....
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~----------yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~--~~~~~~l 294 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRL----------YEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE--RKEHSYL 294 (328)
T ss_pred ecCCCcccccchhhcCchhee----------cCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc--cccCcHH
Confidence 9999954221100 0111100 00111110 1123334556667777776 777775432 2555667
Q ss_pred HHHHhc
Q 019692 289 IKSVLP 294 (337)
Q Consensus 289 v~~~l~ 294 (337)
|...+.
T Consensus 295 v~~~m~ 300 (328)
T KOG2904|consen 295 VRIWMI 300 (328)
T ss_pred HHHHHH
Confidence 777663
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=83.69 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=65.5
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
....+...++.+|||+|||+|..+..++......++++++|+++.+++.++++.. ...++.++.+|+.+.+.. .+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~---~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE---DN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC---CC
Confidence 3444555678999999999999999999886433689999999999999998876 335688999999876532 25
Q ss_pred CccEEEE
Q 019692 209 EVRAILL 215 (337)
Q Consensus 209 ~fD~Ilv 215 (337)
+||+|++
T Consensus 106 ~~D~i~~ 112 (223)
T TIGR01934 106 SFDAVTI 112 (223)
T ss_pred cEEEEEE
Confidence 7999985
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-07 Score=86.01 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=88.2
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 204 (337)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.+++++++.|+. +|+++.+|+.+.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 3445556677888999999999999999999985 5579999997 78999999999999985 59999999875432
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV 283 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ 283 (337)
..+|+|++ + .++.. ++.+ .-.++|+++.+.+++ |+++-....+...
T Consensus 214 ---~~~D~v~~----~--~~lh~-----------------~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 214 ---PEADAVLF----C--RILYS-----------------ANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred ---CCCCEEEe----E--hhhhc-----------------CChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 23688875 1 12211 0111 125789999988886 7776655444433
Q ss_pred cC
Q 019692 284 EN 285 (337)
Q Consensus 284 EN 285 (337)
++
T Consensus 261 ~~ 262 (306)
T TIGR02716 261 EN 262 (306)
T ss_pred CC
Confidence 33
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-08 Score=86.07 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=66.5
Q ss_pred EechhhHHHHHHhCC---CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019692 121 LQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 197 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~---~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~ 197 (337)
+|......+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. .++.++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence 444444444433332 335789999999999999999875 45689999999999998887764 3688999998
Q ss_pred CCCCCCCCCCCCccEEEECCC
Q 019692 198 LNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpP 218 (337)
.+.+... .+||+|+++-.
T Consensus 90 ~~~~~~~---~~fD~vi~~~~ 107 (240)
T TIGR02072 90 EKLPLED---SSFDLIVSNLA 107 (240)
T ss_pred hhCCCCC---CceeEEEEhhh
Confidence 8776432 57999997543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=87.77 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=103.3
Q ss_pred CCCchhhhcCeEEEechhh------HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC--------------------
Q 019692 108 LHVHPLIVNGCVFLQGKAS------SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-------------------- 161 (337)
Q Consensus 108 ~~~~~~~~~G~~~~Qd~ss------~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-------------------- 161 (337)
.....+++.||=.-+..+. ..+..+.+.+++..++|--||+|.+.+..|-+..+
T Consensus 156 ttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~ 235 (381)
T COG0116 156 TTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKD 235 (381)
T ss_pred CCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHH
Confidence 3445778888877777653 22233445677889999999999888777665432
Q ss_pred -----------CC-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCCCCc
Q 019692 162 -----------KG-------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 162 -----------~g-------~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+ .++|+|+|+++++.|+.|+++.|+.. |++.++|+..+.... +.+|+|++|||.- .
T Consensus 236 lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYG-e 311 (381)
T COG0116 236 LWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYG-E 311 (381)
T ss_pred HHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcc-h
Confidence 11 47899999999999999999999965 999999999987553 5789999999942 1
Q ss_pred cccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 223 GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 223 G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+ +. +. .....+...+.+...+.++. +..|++|
T Consensus 312 -----R----lg-----------~~---~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 312 -----R----LG-----------SE---ALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred -----h----cC-----------Ch---hhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 1 10 12 33445777777777676665 5676654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=93.53 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..++..+|.+|||+|||+|..+..+++.. +.++|+|+|+++.+++.+++++...+. ++.++++|+.+++...+ .++|
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe-deSF 488 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE-KESV 488 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC-CCCE
Confidence 34555678999999999999988888875 458999999999999999998876653 58889999887652221 2579
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|+|++.++
T Consensus 489 DvVVsn~v 496 (677)
T PRK06922 489 DTIVYSSI 496 (677)
T ss_pred EEEEEchH
Confidence 99997654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-08 Score=90.50 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=65.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEe-ccCCCCCCCC-CCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLH-GDFLNLDPKD-PAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~-~D~~~~~~~~-~~~~~fD~ 212 (337)
.+.+|||+|||+|.....++.... ..+++|+|+|+.+++.+++|++.+ ++.+ |.++. .|...+.... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999999988887654 478999999999999999999999 7864 77754 3433332111 11257999
Q ss_pred EEECCCCCCcc
Q 019692 213 ILLDPSCSGSG 223 (337)
Q Consensus 213 IlvDpPCSg~G 223 (337)
|+++||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999966543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=79.99 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=60.7
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+|||+|||.|.....|++-- =.+.++++|-++.+++.|+..+++.|++| |++.+.|....... .++||+|+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~---~~qfdlvl 141 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL---SGQFDLVL 141 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc---ccceeEEe
Confidence 499999999999988888752 24679999999999999999999999988 99999999876432 25788776
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=88.12 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++.. ..+++++.+|+.+.+... +.||+|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEE
Confidence 4688999999999999998888763 4789999999999999998764 346888999998765432 57999997
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
.
T Consensus 185 ~ 185 (340)
T PLN02490 185 A 185 (340)
T ss_pred c
Confidence 3
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=84.15 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=62.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. ..+|+|+|+++.++..+++++...+. .++.+.++|+.+.+ .+||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 457899999999999999999874 35899999999999999999988776 46999999987764 469999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 124 i~ 125 (219)
T TIGR02021 124 VC 125 (219)
T ss_pred EE
Confidence 85
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=82.29 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=76.8
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.++++++..|+. ++.++..|+...+.. ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~-- 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG-- 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh--
Confidence 379999999999999998875 3478999999999999999999998875 489999998654321 46999984
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+++..- .-...+++.+.+++++ |.++.++
T Consensus 74 ----~~~l~~~--------------------------~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 74 ----FEVIHHI--------------------------KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ----HHHHHhC--------------------------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 1222110 0124678888888887 7777654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-07 Score=78.78 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=105.1
Q ss_pred hHHHHHHh------CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l------~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.++ .+++|++||=+||++|....|++..++ .|.|+|+|.+++..+.+-..+++. +||..+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCC
Confidence 45555553 367899999999999999999999987 799999999999999998888774 689999999987
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH-HHHhCCCCC-c--EEEE
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL-RHALSFPGV-E--RVVY 275 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL-~~A~~~~~~-G--~lvY 275 (337)
......-.+.+|+|+.|.. -|+ |.+|+ .+|-.|++. | .++-
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---------Qp~--------------------------Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---------QPN--------------------------QAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC---------Cch--------------------------HHHHHHHHHHHhcccCCeEEEEE
Confidence 7655433467999999976 111 45554 455567775 6 4555
Q ss_pred EcCCCCcccC-HHHHHHHhchhcCCCcEEec
Q 019692 276 STCSIHQVEN-EDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 276 sTCS~~~~EN-e~vv~~~l~~~~~~~~~~~~ 305 (337)
=.-|+.-.+. +.|.+.-++.-...+|++..
T Consensus 181 KArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 181 KARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 5778877666 44445455544566677654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=83.03 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
++...+.+.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. ++.++..|+....... .
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 112 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH--P 112 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--C
Confidence 4444455667899999999999999888775 36899999999999999999888776 5788888877664222 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++.-..... ++ ...+|+.+.+++++ |.++.+++.
T Consensus 113 ~~fD~Ii~~~~l~~~------~~--------------------------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEMLEHV------PD--------------------------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhHhhcc------CC--------------------------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 579999974321111 00 13567777777776 888877664
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=85.35 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
...+|||+|||.|+.+..+++. .+..+|+++|+|+.+++.+++.+...+ -++++++.+|+..+.... .++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCccc
Confidence 4679999999999999888765 234689999999999999999987643 246999999998765432 25799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++|.+
T Consensus 153 vIi~D~~ 159 (283)
T PRK00811 153 VIIVDST 159 (283)
T ss_pred EEEECCC
Confidence 9999974
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=83.36 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++... +...++|+|+|+.+++.+++++ .++.+.++|+.+ +.. .++||+|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~---~~sfD~V 109 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFK---DNFFDLV 109 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCC---CCCEEEE
Confidence 34568899999999999999998875 3478999999999999998764 346778888876 322 2579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 110 ~~ 111 (204)
T TIGR03587 110 LT 111 (204)
T ss_pred EE
Confidence 95
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=83.14 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=69.2
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
+.++.-+.++. .+.+-.+|.|+|||||..|-.+++.. +...|+|+|.|+.|++.+++.+ .++++..+|..+..
T Consensus 16 tRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC
Confidence 44455555543 45667899999999999999999997 4589999999999999986663 57899999999887
Q ss_pred CCCCCCCCccEEEECCC
Q 019692 202 PKDPAYSEVRAILLDPS 218 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpP 218 (337)
+. ..+|+|+.++-
T Consensus 89 p~----~~~dllfaNAv 101 (257)
T COG4106 89 PE----QPTDLLFANAV 101 (257)
T ss_pred CC----Cccchhhhhhh
Confidence 65 45889988765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=94.26 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=88.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HHHh-----CCCcEEEEeccCCCCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS-----GAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~--~~~~-----g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
.+..+|||+|||+|..+..+++. .+..+|+++|+|+++++.++++ +... .-++++++.+|+.++..... +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~--~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA--E 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC--C
Confidence 45679999999999999888764 2236999999999999999984 3322 12469999999987643322 5
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~ 287 (337)
+||+|++|+|.... +. ..+ -...+.++.+.+.+++ |.++..++|.. ...+
T Consensus 373 ~fDvIi~D~~~~~~------~~----------------~~~-----L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~ 423 (521)
T PRK03612 373 KFDVIIVDLPDPSN------PA----------------LGK-----LYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPK 423 (521)
T ss_pred CCCEEEEeCCCCCC------cc----------------hhc-----cchHHHHHHHHHhcCCCeEEEEecCCcc--cchH
Confidence 79999999874320 00 000 0124667777777887 67666555433 3344
Q ss_pred HHHHHhchhcCCCcE
Q 019692 288 VIKSVLPIAMSFGFQ 302 (337)
Q Consensus 288 vv~~~l~~~~~~~~~ 302 (337)
....+.+..++.||.
T Consensus 424 ~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 424 AFWSIEATLEAAGLA 438 (521)
T ss_pred HHHHHHHHHHHcCCE
Confidence 444444433445563
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=83.56 Aligned_cols=132 Identities=25% Similarity=0.243 Sum_probs=103.2
Q ss_pred hHHHHHHh------CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l------~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.++ -++||.+||=+||++|..-.|++..+++.+.|||+|.+...=+.+...+++. .||..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 56666554 3689999999999999999999999999999999999999888888877764 589999999998
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHHhCCCCC-c-EEEE-
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK-ALRHALSFPGV-E-RVVY- 275 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-lL~~A~~~~~~-G-~lvY- 275 (337)
..........+|+||.|.+ .|| |.. +..+|..||+. | .++|
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qpd--------------------------q~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QPD--------------------------QARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cch--------------------------hhhhhhhhhhhhhccCCeEEEEE
Confidence 7665443457899999988 333 223 33456667875 5 4444
Q ss_pred -EcCCCCcccCHHHHHHHhc
Q 019692 276 -STCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 276 -sTCS~~~~ENe~vv~~~l~ 294 (337)
+.|+-....+|.|.+.-.+
T Consensus 262 kancidstv~ae~vFa~Ev~ 281 (317)
T KOG1596|consen 262 KANCIDSTVFAEAVFAAEVK 281 (317)
T ss_pred ecccccccccHHHHHHHHHH
Confidence 3798888999999876654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-07 Score=72.71 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=69.2
Q ss_pred EeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCC
Q 019692 142 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg 221 (337)
||+|||+|..+..+++. +...|+++|+++.+++.++++.... ++.+..+|+.+++..+ ++||.|++--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~---~sfD~v~~~~---- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD---NSFDVVFSNS---- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T---T-EEEEEEES----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc---cccccccccc----
Confidence 89999999999999997 4689999999999999999987654 3669999999997554 6899998521
Q ss_pred ccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE
Q 019692 222 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV 274 (337)
Q Consensus 222 ~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv 274 (337)
++.. + +-+..+++++.+.+++ |.++
T Consensus 69 --~~~~-------------------------~-~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 69 --VLHH-------------------------L-EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --HGGG-------------------------S-SHHHHHHHHHHHHEEEEEEEE
T ss_pred --ceee-------------------------c-cCHHHHHHHHHHHcCcCeEEe
Confidence 1110 0 2246788899888887 6665
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=81.76 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=79.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..++.+...|+.+.+... ..+||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEeh
Confidence 4789999999999999888774 2579999999999999999999887767889999987765432 2579999963
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
-. +..- .-...+|..+.+.+++ |.++.+++.
T Consensus 120 ~~------l~~~--------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EV------LEHV--------------------------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hH------HHhC--------------------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 21 1100 0124677888777776 777777663
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.9e-08 Score=83.09 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
-|.+-.+++...|.-..-.++||+|||.|..|..||... .+++++|+++.+++.+++++.. .++|++.+.|+...
T Consensus 27 E~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~ 101 (201)
T PF05401_consen 27 ERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF 101 (201)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-
T ss_pred HHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC
Confidence 343334444444555556799999999999999998874 6899999999999999999874 47899999998766
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+. ++||.|+ ||..+..=. ..++ ....++.....+.+ |.||..+
T Consensus 102 ~P~----~~FDLIV----~SEVlYYL~------------------~~~~-------L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 102 WPE----GRFDLIV----LSEVLYYLD------------------DAED-------LRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp --S----S-EEEEE----EES-GGGSS------------------SHHH-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC----CCeeEEE----EehHhHcCC------------------CHHH-------HHHHHHHHHHHhCCCCEEEEEE
Confidence 433 6899999 455543210 1122 23455666666666 8999853
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=87.67 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=60.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEeccCCCCCCCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IK---LS--GAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~--~~---~~--g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+||++|+|.|+.+..+.+. .+..+|+++|+|+++++.+++. +. +. .-++++++.+|+..+.... .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CCC
Confidence 3469999999999977666654 3447999999999999999962 21 21 2356999999998865433 257
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
||+|++|.|
T Consensus 227 YDVIIvDl~ 235 (374)
T PRK01581 227 YDVIIIDFP 235 (374)
T ss_pred ccEEEEcCC
Confidence 999999987
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=91.58 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=82.4
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
|......+...+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.+++... ...+++++++|+....
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPD 96 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccc
Confidence 3333445556666677889999999999999999986 3689999999999987654221 2357999999986432
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
...+ .++||+|++..+..-. +.+. ...+|....+.+++ |.+++.-
T Consensus 97 ~~~~-~~~fD~I~~~~~l~~l-----------------------~~~~-------~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 97 LNIS-DGSVDLIFSNWLLMYL-----------------------SDKE-------VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred cCCC-CCCEEEEehhhhHHhC-----------------------CHHH-------HHHHHHHHHHhcCCCeEEEEEe
Confidence 2111 2579999987653211 1111 14678888887776 7776653
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=88.87 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=75.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAY 207 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~~ 207 (337)
..+|.+++|+.++|+.+|-||.|..|+..+++ ++|+|+|.|+.+++.++++++.++ +++.++++++.++.... ...
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45567889999999999999999999998764 999999999999999999998764 56999999998865322 123
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
.++|.|++|--+|+
T Consensus 91 ~~vDgIl~DLGvSS 104 (305)
T TIGR00006 91 TKIDGILVDLGVSS 104 (305)
T ss_pred CcccEEEEeccCCH
Confidence 57999999988884
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-07 Score=80.01 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=82.9
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
..+-+...+++..++..-...++||+|.-+|+.++.+|..+..+|+|+++|+++...+...+..+..|+.. |+++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 44555666777777777778899999999999999999999999999999999999999999999999865 99999987
Q ss_pred CCCCCC---CCCCCCccEEEECCC
Q 019692 198 LNLDPK---DPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~---~~~~~~fD~IlvDpP 218 (337)
.+.... +...++||++|+|+-
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccc
Confidence 654311 112578999999975
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=80.99 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=56.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~------------~g~~~v~~~~~D~~~~~~~ 203 (337)
.++.+|||+|||.|.-+..||+. +..|+|+|+|+.+++.+...... ..-.+|+++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57889999999999999999985 46899999999999976432110 0113588999999887643
Q ss_pred CCCCCCccEEEE
Q 019692 204 DPAYSEVRAILL 215 (337)
Q Consensus 204 ~~~~~~fD~Ilv 215 (337)
. ..+||.|+-
T Consensus 110 ~--~~~fD~i~D 119 (213)
T TIGR03840 110 D--LGPVDAVYD 119 (213)
T ss_pred c--CCCcCEEEe
Confidence 2 246888863
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=84.71 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~----~v~~~~~D~~~~~~~~~~~~ 208 (337)
+..|.+|||+|||.|-.+.+||++ +..|+|+|+++.+++.+++..+.... . .+++.+.|++... +
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~ 157 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------G 157 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------c
Confidence 344788999999999999999998 47999999999999999999443322 1 2445555655443 4
Q ss_pred CccEEEE
Q 019692 209 EVRAILL 215 (337)
Q Consensus 209 ~fD~Ilv 215 (337)
.||.|+|
T Consensus 158 ~fDaVvc 164 (282)
T KOG1270|consen 158 KFDAVVC 164 (282)
T ss_pred ccceeee
Confidence 5999983
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-08 Score=77.67 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred EeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 142 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++...+..+...+..+..+...... .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-PESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC-----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-ccccceehh
Confidence 799999999999999886 568999999999999999999998876665566555554433322 158999995
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-07 Score=84.77 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=68.6
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...++..++..++++|||+|||+|..|..+++.. ..|+++|+|+.+++.+++++.. ..+++++++|+...+..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--
Confidence 3445556677889999999999999999999874 4699999999999999988754 35799999999887643
Q ss_pred CCCCcc---EEEECCCC
Q 019692 206 AYSEVR---AILLDPSC 219 (337)
Q Consensus 206 ~~~~fD---~IlvDpPC 219 (337)
.+| .|+.++|.
T Consensus 91 ---~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ---DFPKQLKVVSNLPY 104 (253)
T ss_pred ---HcCCcceEEEcCCh
Confidence 345 99999984
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-07 Score=83.60 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
..+...++.+|||+|||+|..+..++.... ...+|+|+|+++.+++.++++....+ +.+...++..++.. .
T Consensus 54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~~---~ 127 (232)
T PRK06202 54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVAE---G 127 (232)
T ss_pred HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEeccccccc---C
Confidence 334445678999999999999998887542 23589999999999999988765443 45555555444432 2
Q ss_pred CCccEEEEC
Q 019692 208 SEVRAILLD 216 (337)
Q Consensus 208 ~~fD~IlvD 216 (337)
++||+|++.
T Consensus 128 ~~fD~V~~~ 136 (232)
T PRK06202 128 ERFDVVTSN 136 (232)
T ss_pred CCccEEEEC
Confidence 579999963
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-07 Score=83.28 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=84.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.+||++|||.|+.+..+++.. +..+|+++|+++.+++.+++++...+ ..+++++.+|+..+.... .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccE
Confidence 34599999999999888777653 34689999999999999999886643 245888888887654322 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
|++|++-. .+. ... + ...+.++.+.+.+++ |.++..++|.. -+...+..
T Consensus 149 Ii~D~~~~-~~~----------------------~~~---l--~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~ 198 (270)
T TIGR00417 149 IIVDSTDP-VGP----------------------AET---L--FTKEFYELLKKALNEDGIFVAQSESPW--IQLELITD 198 (270)
T ss_pred EEEeCCCC-CCc----------------------ccc---h--hHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHH
Confidence 99998732 111 000 0 124566677777776 88887766533 33445444
Q ss_pred Hh
Q 019692 292 VL 293 (337)
Q Consensus 292 ~l 293 (337)
++
T Consensus 199 ~~ 200 (270)
T TIGR00417 199 LK 200 (270)
T ss_pred HH
Confidence 33
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=81.97 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL 200 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~ 200 (337)
.++.+|||+|||+|.+|..+++.+....+++++|+|++|++.+++++..... -+|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 4678999999999999999998864347899999999999999999876431 2377889998764
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-08 Score=85.67 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=93.6
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~ 208 (337)
....++.|++|||.|.|-|+.++..++. +...|+.+|.|+..++.+.-|--..++ .+|+++.+|+.++..... ..
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-D~ 204 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-DE 204 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-cc
Confidence 4456778999999999999988866664 445999999999999987766443333 248999999988765543 36
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE-EEEcCCCCcccCH
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV-VYSTCSIHQVENE 286 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l-vYsTCS~~~~ENe 286 (337)
+||+|+-|||..+... .+ .-.++-+.-++.+++ |+| =|+.-.-..--.-
T Consensus 205 sfDaIiHDPPRfS~Ag------------------------eL-----YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~ 255 (287)
T COG2521 205 SFDAIIHDPPRFSLAG------------------------EL-----YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL 255 (287)
T ss_pred ccceEeeCCCccchhh------------------------hH-----hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC
Confidence 7999999999544321 00 113455555666665 554 4554433333333
Q ss_pred HHHHHHhchhcCCCcEEecC
Q 019692 287 DVIKSVLPIAMSFGFQLATP 306 (337)
Q Consensus 287 ~vv~~~l~~~~~~~~~~~~~ 306 (337)
++-..+.+.-..-||+.+.-
T Consensus 256 d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 256 DLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred ChhHHHHHHHHhcCceeeee
Confidence 33333333335678886543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=81.64 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=62.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+.|+|+|+|-.+...|.. ..+|+|+|.++.+.+.+++|+.-.|..|++++.+|+.++.. .+.|+|+|.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHHH
Confidence 379999999999999888776 36899999999999999999998999999999999998763 467899864
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=86.15 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+|.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..+ ..++.+...|...+. ++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~------~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS------GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC------CCcC
Confidence 5789999999999999999875 3689999999999999999988753 235788888875442 5699
Q ss_pred EEEE
Q 019692 212 AILL 215 (337)
Q Consensus 212 ~Ilv 215 (337)
+|++
T Consensus 215 ~Vv~ 218 (315)
T PLN02585 215 TVTC 218 (315)
T ss_pred EEEE
Confidence 9984
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=83.38 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+.+|||+|||+|..+..++...... ..|+|+|+|+.+++.++++ ..++.+..+|+.+++..+ ++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~---~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFAD---QSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcC---CceeEE
Confidence 456789999999999999998876432 3799999999999998765 246889999998876543 579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
+.
T Consensus 156 ~~ 157 (272)
T PRK11088 156 IR 157 (272)
T ss_pred EE
Confidence 84
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-08 Score=84.96 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCC-CCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDP-AYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~-~~~~fD~Il 214 (337)
..+.|+|..||.||-|++.|.. ...|+++|+|+-++..+++|++-+|+++ |+++++|+.+...... ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4678999999999999999886 3689999999999999999999999976 9999999876542210 012478999
Q ss_pred ECCCCCCccccC
Q 019692 215 LDPSCSGSGTAA 226 (337)
Q Consensus 215 vDpPCSg~G~~~ 226 (337)
.-||-+|.|-.+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-07 Score=82.14 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..+++.. .+.|+|+|+|++|++.+++.. ..+++|+.+++..+ ++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 369999999999999987641 34678888886543 68999996
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=80.13 Aligned_cols=71 Identities=24% Similarity=0.384 Sum_probs=59.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. +++.+..+|+... .+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEE
Confidence 56789999999999999988875 25799999999999999999988877 4689999984321 25699998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 133 ~ 133 (230)
T PRK07580 133 C 133 (230)
T ss_pred E
Confidence 6
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=82.21 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=90.5
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-.+||+|||.|...+++|.. .+...++|||+....+..+.+.+.+.|++|+.+++.|+..+.......++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999998 56678999999999999999999999999999999999877655433357899998766
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
.|. +... ..+---+|...|+...+.|++ |.|-+. .-|++..++
T Consensus 129 ---------DPW---pKkR------------H~KRRl~~~~fl~~~a~~Lk~gG~l~~a------TD~~~y~e~ 172 (227)
T COG0220 129 ---------DPW---PKKR------------HHKRRLTQPEFLKLYARKLKPGGVLHFA------TDNEEYFEW 172 (227)
T ss_pred ---------CCC---CCcc------------ccccccCCHHHHHHHHHHccCCCEEEEE------ecCHHHHHH
Confidence 222 2111 101112356778787777777 555443 346666666
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=72.88 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=91.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCC------CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLD------PKDPAY 207 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~------~~~~~~ 207 (337)
++|+++|||+||+||.++...-+..++.|.|.+||+-.- .....++++.+ |+++.. ...+ .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp-~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALP-N 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCC-C
Confidence 367999999999999999988889889999999998531 12344666666 665532 1112 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
..+|+|+.|.---.+|+ ...+..++.++-...|.-|+.++.+ |.+| |-+...+.+
T Consensus 135 r~VdvVlSDMapnaTGv---------------------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~ 190 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV---------------------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEE 190 (232)
T ss_pred CcccEEEeccCCCCcCc---------------------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCch
Confidence 57999999977666664 2334556777778888999998877 8777 888887777
Q ss_pred HHHHHHhc
Q 019692 287 DVIKSVLP 294 (337)
Q Consensus 287 ~vv~~~l~ 294 (337)
.-.++-|.
T Consensus 191 ~~l~r~l~ 198 (232)
T KOG4589|consen 191 ALLQRRLQ 198 (232)
T ss_pred HHHHHHHH
Confidence 77777664
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-07 Score=82.48 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=89.0
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
..+||+|||.|...+.+|..- +...++|+|+...++..+.+.+.+.+++|+.++++|+..+.......+++|.|.+.=|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999984 6689999999999999999999999999999999999874322111257899998766
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchh-c
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIA-M 297 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~-~ 297 (337)
+ | |+..... ..| -.|...|....+.|++|..+| ...-++...+..++.. .
T Consensus 98 D---------P---WpK~rH~-krR-----------l~~~~fl~~~~~~L~~gG~l~-----~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 98 D---------P---WPKKRHH-KRR-----------LVNPEFLELLARVLKPGGELY-----FATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ----------------SGGGG-GGS-----------TTSHHHHHHHHHHEEEEEEEE-----EEES-HHHHHHHHHHHHH
T ss_pred C---------C---Ccccchh-hhh-----------cCCchHHHHHHHHcCCCCEEE-----EEeCCHHHHHHHHHHHHh
Confidence 3 2 1111000 001 123566666666677644443 3334566666666532 2
Q ss_pred -CCCcEEe
Q 019692 298 -SFGFQLA 304 (337)
Q Consensus 298 -~~~~~~~ 304 (337)
+.+|+..
T Consensus 149 ~~~~f~~~ 156 (195)
T PF02390_consen 149 SHPGFENI 156 (195)
T ss_dssp HSTTEEEE
T ss_pred cCcCeEEc
Confidence 4678776
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-06 Score=74.93 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred chhhHHHHHH--hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH------------HhCCC
Q 019692 123 GKASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAA 188 (337)
Q Consensus 123 d~ss~l~~~~--l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~------------~~g~~ 188 (337)
.+...+...+ +.+.++.+|||+|||.|.-+..||+. +..|+|+|+++.+++.+..... .....
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccC
Confidence 3444444433 24456889999999999999999984 4689999999999998642110 11123
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+|++.++|+.++.+.. ...||.|+
T Consensus 98 ~v~~~~~D~~~l~~~~--~~~fd~v~ 121 (218)
T PRK13255 98 EITIYCGDFFALTAAD--LADVDAVY 121 (218)
T ss_pred ceEEEECcccCCCccc--CCCeeEEE
Confidence 5889999999886543 25788887
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=79.67 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=75.2
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
..-++..+++.+++.||++|+|.|..|..+++.. .+|+|+|+|+..+..+++.+. ...|++++++|+...+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence 3456677788899999999999999999999973 689999999999999999876 34689999999998875431
Q ss_pred CCCCccEEEECCCCCCc
Q 019692 206 AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~ 222 (337)
..++.|+.+-|..=+
T Consensus 94 --~~~~~vVaNlPY~Is 108 (259)
T COG0030 94 --AQPYKVVANLPYNIS 108 (259)
T ss_pred --cCCCEEEEcCCCccc
Confidence 157899999997643
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=80.13 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
....+||++|+|.|+.+..+++. .+..+|+.+|+++..++.+++.+...+ . ++++++.+|+..+....+ .++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCC
Confidence 34689999999999999888875 334689999999999999999886542 2 459999999876643221 25799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++|.+
T Consensus 168 vIi~D~~ 174 (308)
T PLN02366 168 AIIVDSS 174 (308)
T ss_pred EEEEcCC
Confidence 9999976
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=89.67 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred CCchhhhcCeEEEechhh---HHHHH---HhCC-CCCCeEEeecCCchhHHHHHHHHcC---------------------
Q 019692 109 HVHPLIVNGCVFLQGKAS---SMVAA---ALAP-KPGWKVLDACSAPGNKTVHLAALMK--------------------- 160 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss---~l~~~---~l~~-~~g~~VLDl~aG~G~kt~~la~~~~--------------------- 160 (337)
...++++.|+-..+.++. .+++. +... +++..++|.+||+|.+.+..|....
T Consensus 155 sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~ 234 (702)
T PRK11783 155 SGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDE 234 (702)
T ss_pred CCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCH
Confidence 344667777655444442 22322 2233 5688999999999988777665311
Q ss_pred --------------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 161 --------------------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 161 --------------------~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
...+|+|+|+++.+++.+++|++.+|+.+ |.+.++|+.++..... .+.||+|++|||.
T Consensus 235 ~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-~~~~d~IvtNPPY 313 (702)
T PRK11783 235 ALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-KGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-cCCCCEEEECCCC
Confidence 12369999999999999999999999965 8999999988764321 2469999999995
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=78.20 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.|.+||=+ |-...+.....+.+...+|+.+|+|++.++..++.+++.|++ |+.++.|+++..+..- .++||+++.|
T Consensus 44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 47889844 566655544445566689999999999999999999999998 9999999998765542 4789999999
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc-CH-HHHHHHh
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE-NE-DVIKSVL 293 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E-Ne-~vv~~~l 293 (337)
||.+-.|+ .-.|.++++.+++ |..+|-..|..+.- .+ ..|++++
T Consensus 120 PPyT~~G~---------------------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l 166 (243)
T PF01861_consen 120 PPYTPEGL---------------------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL 166 (243)
T ss_dssp --SSHHHH---------------------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH
T ss_pred CCCCHHHH---------------------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH
Confidence 99776664 3567788887775 75667666654321 11 2466666
Q ss_pred chhcCCCcEEec
Q 019692 294 PIAMSFGFQLAT 305 (337)
Q Consensus 294 ~~~~~~~~~~~~ 305 (337)
- +.||.+..
T Consensus 167 ~---~~gl~i~d 175 (243)
T PF01861_consen 167 L---EMGLVITD 175 (243)
T ss_dssp H---TS--EEEE
T ss_pred H---HCCcCHHH
Confidence 2 45666543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=73.39 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
....++|+|||+|..+..+++...+.....|.|+|+++++...+.++.+++. +.++..|....... +++|+++.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~----~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN----ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc----CCccEEEEC
Confidence 3678999999999999999999888888999999999999999999988875 88889887765432 689999999
Q ss_pred CCC
Q 019692 217 PSC 219 (337)
Q Consensus 217 pPC 219 (337)
||.
T Consensus 118 PPY 120 (209)
T KOG3191|consen 118 PPY 120 (209)
T ss_pred CCc
Confidence 995
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=79.51 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCCeEEeecCCchh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHHHH----HhC-----------------
Q 019692 136 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK----LSG----------------- 186 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~----kt~~la~~~~~----~g~V~avD~~~~~l~~l~~~~~----~~g----------------- 186 (337)
.++.+|||+|||+|. .+..+++.... ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 44455554332 4689999999999999998531 001
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ .+|++.++|..+.++. .++||+|+| .. ++.. .+ ...|.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~c----rn--vl~y-----------------f~-------~~~~~~~ 224 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPP---LGDFDLIFC----RN--VLIY-----------------FD-------EPTQRKL 224 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCc---cCCCCEEEe----ch--hHHh-----------------CC-------HHHHHHH
Confidence 1 2588999999886542 367999994 32 2110 01 1235688
Q ss_pred HHHHhCCCCC-cEEEE
Q 019692 261 LRHALSFPGV-ERVVY 275 (337)
Q Consensus 261 L~~A~~~~~~-G~lvY 275 (337)
++...+.+++ |.++.
T Consensus 225 l~~l~~~L~pGG~L~l 240 (264)
T smart00138 225 LNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 8888888887 66654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-06 Score=84.46 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=72.1
Q ss_pred CeEEEechhhHHHHHHhCCC-------CCCeEEeecCCchhHHHHHHHHcCC-------CCEEEEEeCCHHHHHHHHHHH
Q 019692 117 GCVFLQGKASSMVAAALAPK-------PGWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~-------~g~~VLDl~aG~G~kt~~la~~~~~-------~g~V~avD~~~~~l~~l~~~~ 182 (337)
|.|+-...-+.+++..+... .+.+|||.|||+|++...++..+.. .-.++++|+++..+..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 44444444444444443222 3458999999999999988876631 246899999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCCC--CCCCCCccEEEECCCCCCcc
Q 019692 183 KLSGAANIEVLHGDFLNLDPK--DPAYSEVRAILLDPSCSGSG 223 (337)
Q Consensus 183 ~~~g~~~v~~~~~D~~~~~~~--~~~~~~fD~IlvDpPCSg~G 223 (337)
..++...+.+.+.|+...... ....+.||+|+.+||.....
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence 887633356666665432211 11135799999999977653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.4e-05 Score=68.75 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=75.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+..-.|.+|||+|||.|+.+..|+.. +...|+|+|.+..-+-..+-.-+-.|.++ +..+..-.++++. .+.||
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----~~~FD 184 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----LGAFD 184 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----cCCcC
Confidence 33446999999999999999999885 56789999999887766544444445443 3333334455543 26799
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCcccC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVEN 285 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~G~lvYsTCS~~~~EN 285 (337)
.||+ .|++-++.+- ...|......++ +|.||.=|--+.-+++
T Consensus 185 tVF~------MGVLYHrr~P--------------------------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 185 TVFS------MGVLYHRRSP--------------------------LDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEEE------eeehhccCCH--------------------------HHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 9994 6777543221 344555555444 4888876665554444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9e-06 Score=71.72 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=63.9
Q ss_pred CeEEEechhhHHHHHHhCCCC--CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 117 GCVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~--g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
.-..+|-+-+.-+..+|+..+ ..-|||+|||+|-.+..+.+- ....+++|+|+.|++.+.+. .+. -.++.
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e---gdlil 99 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE---GDLIL 99 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh---cCeee
Confidence 446788888877778877766 678999999999887766542 35789999999999999862 221 13566
Q ss_pred ccCCCCCCCCCCCCCccEEEE
Q 019692 195 GDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|.-.-.+.. .++||.+|.
T Consensus 100 ~DMG~Glpfr--pGtFDg~IS 118 (270)
T KOG1541|consen 100 CDMGEGLPFR--PGTFDGVIS 118 (270)
T ss_pred eecCCCCCCC--CCccceEEE
Confidence 6654433332 278998874
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-07 Score=80.44 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=49.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CC-CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DP-AYSE 209 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~-~~~~ 209 (337)
.+.+|||+||+|||++..+.+..+..++|+|+|+.+. ....++..+.+|..+.... .. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 4589999999999999999887655689999999876 2235577777776543211 00 1257
Q ss_pred ccEEEECC--CCCCc
Q 019692 210 VRAILLDP--SCSGS 222 (337)
Q Consensus 210 fD~IlvDp--PCSg~ 222 (337)
||+|++|. +|+|.
T Consensus 92 ~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD 106 (181)
T ss_dssp ESEEEE-------SS
T ss_pred cceeccccccCCCCc
Confidence 99999998 45553
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-06 Score=71.32 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=69.4
Q ss_pred hHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
+.++..++. ..++.+|||+|||+|..+..++.. ..+|+++|+++.+++. .++.....+.......
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~- 75 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP- 75 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH-
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc-
Confidence 344455554 567899999999999999988665 2499999999999987 2233333322222221
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.++||+|++- .++..-+| ...+|+...+++++ |.++.++-.
T Consensus 76 --~~~fD~i~~~------~~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 --DGSFDLIICN------DVLEHLPD--------------------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --SSSEEEEEEE------SSGGGSSH--------------------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --ccchhhHhhH------HHHhhccc--------------------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 2689999963 12221111 24788888888887 777666543
|
... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=72.30 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=70.8
Q ss_pred HHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEeccC
Q 019692 131 AALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSG----------AANIEVLHGDF 197 (337)
Q Consensus 131 ~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V-~avD~~~~~l~~l~~~~~~~g----------~~~v~~~~~D~ 197 (337)
..|+ ++||...||+|+|+|+.|..++.+++..|.+ ++||..++.++..++|+.+.- ..++.++.+|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 4455 7899999999999999999999988777764 999999999999999998652 13588899999
Q ss_pred CCCCCCCCCCCCccEEEECCC
Q 019692 198 LNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpP 218 (337)
+...+.. .+||+|.|-+-
T Consensus 154 r~g~~e~---a~YDaIhvGAa 171 (237)
T KOG1661|consen 154 RKGYAEQ---APYDAIHVGAA 171 (237)
T ss_pred cccCCcc---CCcceEEEccC
Confidence 8876553 68999998654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=74.17 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
++||.+|||+|||.|..-.++.+. .+...+++|++++.+..+.++ | +.++++|+.+-....+ .++||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f~-d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADFP-DQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhCC-CCCccEEe
Confidence 468999999999999888777775 357899999999988766544 4 5588999876543332 36899998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 5
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=83.34 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=90.2
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEE
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NIEV 192 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~ 192 (337)
|.|+--..-+.+++..+.+++..+|+|.|||+|+.-...+..+.. ...+++.|+++.....++-|+--.|+. ++..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 888888888999999999999999999999999998888888743 367999999999999999999998987 4677
Q ss_pred EeccCCCCCCCC--CCCCCccEEEECCCCCCcccc
Q 019692 193 LHGDFLNLDPKD--PAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 193 ~~~D~~~~~~~~--~~~~~fD~IlvDpPCSg~G~~ 225 (337)
.++|...-+... ....+||.|+.+||.|+.|-.
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccc
Confidence 777765554332 113579999999999977644
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.2e-06 Score=74.08 Aligned_cols=83 Identities=28% Similarity=0.373 Sum_probs=69.2
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~ 208 (337)
+...++++++.||++|-|||..|..|.+. +.+|+|+|+|+.++..+.++.+-....+ .+++.+|+...+. .
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-----P 122 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-----P 122 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----c
Confidence 44467899999999999999999999887 4799999999999999999987554434 9999999987652 3
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.||.++.+-|.-
T Consensus 123 ~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeccCCcc
Confidence 489999988853
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.1e-07 Score=83.52 Aligned_cols=91 Identities=27% Similarity=0.426 Sum_probs=65.4
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---P 205 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~ 205 (337)
+...|.+++++.++|+.-|.||+|..+.+.+.+ ++|+|+|.|+.+++.++++++.+ -+++.++++++.++.... .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHcc
Confidence 355677899999999999999999999998876 99999999999999999988765 356999999998765221 1
Q ss_pred CCCCccEEEECCCCCC
Q 019692 206 AYSEVRAILLDPSCSG 221 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg 221 (337)
...++|.||+|--+|.
T Consensus 90 ~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 90 GINKVDGILFDLGVSS 105 (310)
T ss_dssp TTS-EEEEEEE-S--H
T ss_pred CCCccCEEEEccccCH
Confidence 2468999999998884
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.7e-06 Score=75.52 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=78.8
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 206 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 206 (337)
++..|.+++++..+|..-|-||++-.+.+.+.+.++++|+|.|+.+++.+++.+..++ .++++++.++.++..... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4566889999999999999999999999998888999999999999999999999887 679999999887754321 2
Q ss_pred CCCccEEEECCCCCC
Q 019692 207 YSEVRAILLDPSCSG 221 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg 221 (337)
..++|.|++|---|+
T Consensus 94 i~~vDGiL~DLGVSS 108 (314)
T COG0275 94 IGKVDGILLDLGVSS 108 (314)
T ss_pred CCceeEEEEeccCCc
Confidence 368999999976553
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=70.31 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..++... ...++++|+++.+++.++. .+++++.+|+.+ +++.. .++||.|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~--~~sfD~Vi 80 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFP--DKSFDYVI 80 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccC--CCCcCEEE
Confidence 468899999999999988887653 3578999999999988753 236778888765 22211 25799999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
+..+
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 8643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.2e-05 Score=71.80 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+||.+|+|.|+.+..+.+.. +..+|+++|+|+..++.+++.+...+ -++++++.+|+..+.... .++||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEE
Confidence 4689999999999888777642 34689999999999999999886432 246999999998876433 2579999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
++|.+
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99975
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.98 E-value=1e-05 Score=78.33 Aligned_cols=104 Identities=29% Similarity=0.309 Sum_probs=78.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+-+|||.-||+|--++..+.-+.+..+|+++|+|+++++.+++|++.+|+.. +++.+.|+..+.... ...||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~--~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR--QERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS--TT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc--cccCCEEEe
Confidence 4589999999999999999887666799999999999999999999999976 899999987764311 367999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
||= |+- .-.|+.|++.++.|.+++.|||
T Consensus 128 DPf--GSp----------------------------------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP----------------------------------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --S--S------------------------------------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCC--CCc----------------------------------cHhHHHHHHHhhcCCEEEEecc
Confidence 985 321 2568888887777889999988
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6e-05 Score=63.83 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-- 204 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-- 204 (337)
..++...+++.|--||++|.|+|-+|-.+.+.......++++|.|++-...+.+.. ..+.++++|+.++....
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhh
Confidence 34455567888999999999999999999888666678999999999998877653 44679999998876221
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.....||.|++-.|--..-+ .. -.+||+.++..++. |.+|--|-+
T Consensus 113 ~~gq~~D~viS~lPll~~P~----------------------~~--------~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPM----------------------HR--------RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcH----------------------HH--------HHHHHHHHHHhcCCCCeEEEEEec
Confidence 12346999998777222111 11 24788888887665 666655555
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.6e-05 Score=71.93 Aligned_cols=89 Identities=25% Similarity=0.360 Sum_probs=70.8
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...++..+++.++..|||+|+|+|..|..+++.. .+|+++|+|+..++.+++... .-++++++++|+..+.....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh
Confidence 4555667788899999999999999999999874 799999999999999998766 34679999999998765431
Q ss_pred CCCCccEEEECCCC
Q 019692 206 AYSEVRAILLDPSC 219 (337)
Q Consensus 206 ~~~~fD~IlvDpPC 219 (337)
.......|+.+.|.
T Consensus 94 ~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSSEEEEEEEETG
T ss_pred hcCCceEEEEEecc
Confidence 11245688888884
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=1e-05 Score=73.04 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHH
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~ 177 (337)
.+|.+|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36789999999999999999885 45799999999987764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=78.99 Aligned_cols=80 Identities=10% Similarity=0.046 Sum_probs=66.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+-.+||+|||.|.+++.+|... +...++|+|+....+..+.+.+.+.|+.|+.++..|+..+....+ ..++|.|++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~-~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP-NNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-cccccEEEEE
Confidence 46789999999999999999984 567899999999999999999999999999999888764443222 2568999987
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
=|
T Consensus 425 FP 426 (506)
T PRK01544 425 FP 426 (506)
T ss_pred CC
Confidence 66
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.1e-05 Score=68.78 Aligned_cols=91 Identities=24% Similarity=0.338 Sum_probs=56.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLNL 200 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~-------~~g~--~~v~~~~~D~~~~ 200 (337)
...+++.+++..+|+|||.|...+++|... +-.+.+|||+.+...+.++...+ .+|. ..+.+.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 355778899999999999999888777664 45679999999998877665443 3454 3588899998765
Q ss_pred CCCCCCCCCccEEEECCCCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg 221 (337)
+....-....|+|+++-=|..
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~ 134 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD 134 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-
T ss_pred HhHhhhhcCCCEEEEeccccC
Confidence 421100235799999876653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=68.43 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=58.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~------------~~~g~~~v~~~~~D~~~~~~ 202 (337)
+.++.+||+.+||.|.-..+||+. +..|+|+|+|+.+++.+.+.. +.....+|+++++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 346789999999999999999986 468999999999999875521 11122369999999999864
Q ss_pred CCCCCCCccEEE
Q 019692 203 KDPAYSEVRAIL 214 (337)
Q Consensus 203 ~~~~~~~fD~Il 214 (337)
.....+.||.|+
T Consensus 118 ~~~~~~~fD~Vy 129 (226)
T PRK13256 118 IANNLPVFDIWY 129 (226)
T ss_pred cccccCCcCeee
Confidence 221235799976
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=9e-05 Score=64.92 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=95.1
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~f 210 (337)
++.......||++|||||..--..- +.+..+|+++|.++.|-+.+.+.++...-.++. ++.++.++++.-. ..++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCe
Confidence 3433444578999999996443221 124579999999999999999999887666777 9999999987332 3689
Q ss_pred cEEEECCC-CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 211 RAILLDPS-CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 211 D~IlvDpP-CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
|.|++.-- ||-. -+.+.|.+..++++| |++++.- |-.+.-+-
T Consensus 147 DtVV~TlvLCSve---------------------------------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~ 190 (252)
T KOG4300|consen 147 DTVVCTLVLCSVE---------------------------------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGF 190 (252)
T ss_pred eeEEEEEEEeccC---------------------------------CHHHHHHHHHHhcCCCcEEEEEe---cccccchH
Confidence 99986532 5421 145788888888887 7777743 33444455
Q ss_pred HHHHhchhcCCCcEEecCCCCCCcc
Q 019692 289 IKSVLPIAMSFGFQLATPFPNGTAE 313 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~~~~~~~~~ 313 (337)
..++++...++-|.+...--.|++.
T Consensus 191 ~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 191 WNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred HHHHHHHHhchhhheeccceEEehh
Confidence 6666654445555554433334443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.5e-05 Score=63.23 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.0
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
+|+|+|||.|..+..++... +.++|+++|.++..++.++++++.+++.++.+++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 456999999999999999999999998888888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.1e-05 Score=61.35 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+....+.+|+|+|||+|. .+..|++. +..|+|+|+++.+++.++++ + +.++.+|..+..... +..
T Consensus 10 ~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~--y~~ 77 (134)
T PRK04148 10 ENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI--YKN 77 (134)
T ss_pred HhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH--Hhc
Confidence 33444457899999999996 66666653 46999999999988777655 3 578899988766543 467
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
+|+|..
T Consensus 78 a~liys 83 (134)
T PRK04148 78 AKLIYS 83 (134)
T ss_pred CCEEEE
Confidence 899974
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.3e-05 Score=67.75 Aligned_cols=88 Identities=30% Similarity=0.389 Sum_probs=59.5
Q ss_pred hHHHHHHhCCCCCC--eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEe
Q 019692 126 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----A-----ANIEVLH 194 (337)
Q Consensus 126 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~-----~~v~~~~ 194 (337)
...++.++.+++|. +|||+.+|-|.-++.+|.. +++|+++|.|+-....+++-+++.. . .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34666777778775 9999999999999999875 3689999999999888887766541 1 3699999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|+.++.... ..+||+|.+||=
T Consensus 139 ~d~~~~L~~~--~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLRQP--DNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCCCH--SS--SEEEE--S
T ss_pred CCHHHHHhhc--CCCCCEEEECCC
Confidence 9999876521 368999999984
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=72.60 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=61.4
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|++||.|+.+..+... +-..|+++|+++.+++..+.|... . ++++|..++..... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc-CCCCCEEEeCCCC
Confidence 6899999999998887764 334689999999999999888632 1 56778877765431 2569999999999
Q ss_pred CCccccCc
Q 019692 220 SGSGTAAE 227 (337)
Q Consensus 220 Sg~G~~~~ 227 (337)
.+.....+
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 98776644
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.9e-05 Score=71.85 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+|.++||+||+|||+|..+.+. +.+|+|||..+ +...+. .-.+|+...+|...+.+. ...+|.|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC---CCCCCEEE
Confidence 368999999999999999999886 36999999543 222222 235689999887776543 25799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|.-|.
T Consensus 276 cDmve~ 281 (357)
T PRK11760 276 CDMVEK 281 (357)
T ss_pred EecccC
Confidence 998753
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.6e-05 Score=75.45 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=57.7
Q ss_pred CCeEEeecCCchhHHHHHHHH---cCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~---~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+..|+|+|||+|-.+...++. .+...+|+|||.++.++..+++.++++|. +.|+++++|.+++... .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 467999999999987555443 23457999999999999999988888888 4599999999998754 479999
Q ss_pred EECC
Q 019692 214 LLDP 217 (337)
Q Consensus 214 lvDp 217 (337)
+...
T Consensus 263 VSEl 266 (448)
T PF05185_consen 263 VSEL 266 (448)
T ss_dssp EE--
T ss_pred EEec
Confidence 9764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-05 Score=70.96 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=61.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-.+..|||+|||+|-.++..|+. +..+|+|+|.+.-+ +.+++.++.+|+.+ |+++.+.++++.. + ..++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L--P-~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL--P-VEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec--C-ccceeEEe
Confidence 35889999999999988877765 46899999988765 89999999999987 8999998887732 2 46899998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
.
T Consensus 133 S 133 (346)
T KOG1499|consen 133 S 133 (346)
T ss_pred e
Confidence 4
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=65.09 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+++|+|+|.|-=++.+|- +.+..+|+-+|....++.-++...+.+|++|++++++.++++..... . ||+|.+=+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~--~-~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKK--Q-YDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccc--c-CcEEEeeh
Confidence 68999999999999999884 45667799999999999999999999999999999999998875432 1 99997543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=63.77 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=60.3
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+++|+|+|.|.=++.+|-.. +..+++-+|.+..++.-++.....+|++||+++++++++ . .. ..+||.|+.=+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~--~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EY--RESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TT--TT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-cc--CCCccEEEeeh
Confidence 89999999999898888775 668999999999999999999999999999999999988 1 11 26799998643
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.4e-05 Score=68.00 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~----~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
...+||=+|.|.|+.+..+.+. .+-.+|++||+|+..++.+++.+..... ++++++.+|+..+...... .+||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccE
Confidence 5789999999999988887765 2346899999999999999998876432 4699999999877654431 27999
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
|++|.+-
T Consensus 154 Ii~D~~d 160 (246)
T PF01564_consen 154 IIVDLTD 160 (246)
T ss_dssp EEEESSS
T ss_pred EEEeCCC
Confidence 9999884
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00096 Score=61.63 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..-+|||++||+|.--+-+...... ...|.-.|.++..++..++.++..|+.+| ++.++|+.+...........+.++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3458999999999877666555432 35899999999999999999999999885 999999887543221112457777
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~-~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+ +|.+--.+| .+ +. ...|......+. +|.|||+.=-+||.- +.|.++|
T Consensus 215 V------sGL~ElF~D-----------------n~---lv---~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~L 263 (311)
T PF12147_consen 215 V------SGLYELFPD-----------------ND---LV---RRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVL 263 (311)
T ss_pred E------ecchhhCCc-----------------HH---HH---HHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHH
Confidence 5 444422222 01 11 123333444444 499999888888853 5677777
Q ss_pred c
Q 019692 294 P 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 264 t 264 (311)
T PF12147_consen 264 T 264 (311)
T ss_pred h
Confidence 3
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00029 Score=62.65 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=80.8
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
|.|+||--|+....+.+. +...+++|+|+++.-++.++++++++|+.+ |++..+|........ +..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEE----
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEE----
Confidence 689999999999999885 233479999999999999999999999765 999999976543221 23688876
Q ss_pred CCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcC
Q 019692 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMS 298 (337)
Q Consensus 220 Sg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~ 298 (337)
+|.|- .+-.+||++....++. ..+|. .|--+...+.++|. +
T Consensus 73 AGMGG------------------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~---~ 114 (205)
T PF04816_consen 73 AGMGG------------------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLY---E 114 (205)
T ss_dssp EEE-H------------------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHH---H
T ss_pred ecCCH------------------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHH---H
Confidence 34442 2346788888765543 56775 45558899999994 3
Q ss_pred CCcEEe
Q 019692 299 FGFQLA 304 (337)
Q Consensus 299 ~~~~~~ 304 (337)
.||.+.
T Consensus 115 ~gf~I~ 120 (205)
T PF04816_consen 115 NGFEII 120 (205)
T ss_dssp TTEEEE
T ss_pred CCCEEE
Confidence 467664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.2e-05 Score=67.15 Aligned_cols=77 Identities=29% Similarity=0.423 Sum_probs=58.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL 200 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~------------~g~~~v~~~~~D~~~~ 200 (337)
+...++.+||+.|||.|.-...||+. +..|+|+|+++.+++.+.+.... ....+|+++++|+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44677889999999999999999985 36999999999999988432211 1123589999999998
Q ss_pred CCCCCCCCCccEEE
Q 019692 201 DPKDPAYSEVRAIL 214 (337)
Q Consensus 201 ~~~~~~~~~fD~Il 214 (337)
.+.. .++||.|+
T Consensus 110 ~~~~--~g~fD~iy 121 (218)
T PF05724_consen 110 PPED--VGKFDLIY 121 (218)
T ss_dssp GGSC--HHSEEEEE
T ss_pred Chhh--cCCceEEE
Confidence 7654 35799998
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00031 Score=65.69 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|..|||+|||+|-.+...+.. +..+|+|+|.++ |.+.++...+.+.+. .|+++.+..+++... ++.|+|+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEe
Confidence 4789999999999988776665 567999999874 778888888877664 599999988877533 57899998
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
.|=
T Consensus 250 EPM 252 (517)
T KOG1500|consen 250 EPM 252 (517)
T ss_pred ccc
Confidence 874
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=61.94 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
...++||+|||-|+.|..|+... .+|+|.|.|..|..+++ +.|.. ++..| +.... ..+||+|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~---vl~~~--~w~~~---~~~fDvIs-- 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT---VLDID--DWQQT---DFKFDVIS-- 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe---EEehh--hhhcc---CCceEEEe--
Confidence 35689999999999999999987 56999999998866544 44653 33222 12212 24799996
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE------------c-CCCCc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS------------T-CSIHQ 282 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs------------T-CS~~~ 282 (337)
|-. ++.|. .....+|+.+.+.+++ |.+|-+ + -+--|
T Consensus 157 --cLN--vLDRc--------------------------~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P 206 (265)
T PF05219_consen 157 --CLN--VLDRC--------------------------DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRP 206 (265)
T ss_pred --ehh--hhhcc--------------------------CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCc
Confidence 332 34331 1125678888777776 877655 1 12222
Q ss_pred ccC--------HHHHHHHhchhcCCCcEEec
Q 019692 283 VEN--------EDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 283 ~EN--------e~vv~~~l~~~~~~~~~~~~ 305 (337)
.|- |+.|..+.+--+..||++..
T Consensus 207 ~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 207 SELLPVKGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred hhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 221 66666666333466888864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=63.05 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=50.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCC-CCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLD-PKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g---~~~v~~~~~D~~~~~-~~~~~~~~fD 211 (337)
..+.+||++|||+|-.++.++.+. +..+|++.|.++ .+..++.|++.++ -.+|.+...|..+.. .......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999998888888873 457999999999 9999999999887 245777777764421 1110124799
Q ss_pred EEEE
Q 019692 212 AILL 215 (337)
Q Consensus 212 ~Ilv 215 (337)
+|+.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=6.8e-05 Score=73.34 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=88.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCC-CCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDP-AYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~-~~~~fD~ 212 (337)
-.++-+|||.-|++|--++..|..+.+-+.|+|.|.+++.++..++|.+.+++.+ |+..+.|+..+-.... ....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3456799999999999999999999888899999999999999999999998866 7788888765532211 1257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
|=+||= |+- ...|+.|++.+..|.|++.|||
T Consensus 187 IDLDPy--Gs~----------------------------------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 187 IDLDPY--GSP----------------------------------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred EecCCC--CCc----------------------------------cHHHHHHHHHhhcCCEEEEEec
Confidence 999985 221 1468899888777899999998
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0003 Score=66.81 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=65.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
...|+|.-+|+|--++-+|.-.+.. +|+..|+|+++++.+++|++.+...+..+++.|+..+..... ..||+|=+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCC
Confidence 6799999999999999988876543 899999999999999999999955667778888877654432 6799999998
Q ss_pred C
Q 019692 218 S 218 (337)
Q Consensus 218 P 218 (337)
=
T Consensus 130 F 130 (380)
T COG1867 130 F 130 (380)
T ss_pred C
Confidence 5
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00075 Score=63.09 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=80.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEeccCC-CCCC-CCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLHGDFL-NLDP-KDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~~D~~-~~~~-~~~~~~~fD~I 213 (337)
.-++||+|+|.-.+-..|+.... +-+++|.|+|+..++.|++|++++ ++.+ |+++...-. .+.. .....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45799999999988666665554 479999999999999999999999 8764 888765322 2211 11112579999
Q ss_pred EECCCCCCcccc------CcccCccC-------CCCCC-CCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 214 LLDPSCSGSGTA------AERLDHLL-------PSHAS-GHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 214 lvDpPCSg~G~~------~~~~d~~~-------~~~~~-~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
+|+||.-.+--- ++.-.... |.... +...+.+++- --..+=.++++....+.. .+..-||=
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~G---GEv~FV~rMI~ES~~~~~--~v~WfTsm 256 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEG---GEVAFVKRMIKESLQLKD--QVRWFTSM 256 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHH---THHHHHHHHHHHHHHHGG--GEEEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCC---ccHHHHHHHHHHHHHhCC--CcEEEeec
Confidence 999996544210 00000000 00000 0000000000 011233456666665532 44444677
Q ss_pred CCcccCHHHHHHHhchhcCCCcEE
Q 019692 280 IHQVENEDVIKSVLPIAMSFGFQL 303 (337)
Q Consensus 280 ~~~~ENe~vv~~~l~~~~~~~~~~ 303 (337)
+...+|=.-+...|+...-..+..
T Consensus 257 vgKkssL~~l~~~L~~~~~~~~~~ 280 (299)
T PF05971_consen 257 VGKKSSLKPLKKELKKLGATNYKV 280 (299)
T ss_dssp ESSGGGHHHHHHHHHHTT-SEEEE
T ss_pred ccCcccHHHHHHHHHhcCCceEEE
Confidence 899999888888886533333433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00024 Score=61.74 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=57.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|.+|||+|+|+|--+...+. .+...|++.|+++.....++-|++.+|+. |.++..|... . ...||+|++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv~-i~~~~~d~~g-~-----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGVS-ILFTHADLIG-S-----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccce-eEEeeccccC-C-----CcceeEEEe
Confidence 488999999999977665544 35679999999999999999999999964 8888888765 2 146899986
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.42 E-value=1.5e-05 Score=62.92 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=26.1
Q ss_pred EeecCCchhHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 142 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 142 LDl~aG~G~kt~~la~~~~~~g--~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|++|+..|..|..+++.+.+.+ +++++|..+. .+..++.+++.++. +++++.+|+.+..+... ..+||.|++|.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 6899999999999998876654 7999999986 44455555556654 59999999866533221 257999999987
Q ss_pred C
Q 019692 219 C 219 (337)
Q Consensus 219 C 219 (337)
-
T Consensus 79 H 79 (106)
T PF13578_consen 79 H 79 (106)
T ss_dssp -
T ss_pred C
Confidence 3
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00051 Score=57.03 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=70.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCC
Q 019692 164 KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242 (337)
Q Consensus 164 ~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~ 242 (337)
+|+|+|+.+++++..+++++..++. +|++++.+..++....+. +++|+++.+ +|-+.. .|..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFN-----LGYLPg-gDk~---------- 63 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFN-----LGYLPG-GDKS---------- 63 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEE-----ESB-CT-S-TT----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEE-----CCcCCC-CCCC----------
Confidence 6999999999999999999999885 599999998888765432 478888765 565532 2221
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCC-Cc--ccCHHHHHHHhchhcCCCcEEe
Q 019692 243 DPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI-HQ--VENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 243 ~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~-~~--~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+-..++.-...|+.|++++++|.++-.+|.. |+ .|..+.|..+++.-....|.+.
T Consensus 64 -------i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 64 -------ITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp -------SB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred -------CCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 2233445577899999988874444444444 66 2334455555543334456664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00069 Score=56.47 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=51.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFL 198 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g--~-~~v~~~~~D~~ 198 (337)
.+...|+|+|||-|+.+..++.++ ...-+|+++|.++..++.+.+..++.+ . .++.+..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 678899999999999999999944 245799999999999999999999887 3 34555555443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00055 Score=63.69 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=69.0
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~ 205 (337)
+....+++ .+||-+|-|.|+.+-.+.+.. +-.+++.||+++..++.+++.+.... -++++++..|..++....+
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 33445566 699999999999999888874 34799999999999999999987654 3569999999988876553
Q ss_pred CCCCccEEEECCC
Q 019692 206 AYSEVRAILLDPS 218 (337)
Q Consensus 206 ~~~~fD~IlvDpP 218 (337)
.+||+|++|--
T Consensus 148 --~~fDvIi~D~t 158 (282)
T COG0421 148 --EKFDVIIVDST 158 (282)
T ss_pred --CcCCEEEEcCC
Confidence 47999999954
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00094 Score=63.67 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-------C---CcEEEEeccCCCCC--CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------A---ANIEVLHGDFLNLD--PKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-------~---~~v~~~~~D~~~~~--~~~ 204 (337)
++.+|||+|||-||-..-.... +-..++|+|++...++.++++.+.+. . -...++.+|..... ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999976655543 45799999999999999999984432 1 12566777765321 111
Q ss_pred -CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcc
Q 019692 205 -PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 283 (337)
Q Consensus 205 -~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ 283 (337)
+....||+|=|=-- + |. ...+.+.. +.+|.++.+.|++|.++..||-
T Consensus 140 ~~~~~~FDvVScQFa------l----------HY-----~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~~---- 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------L----------HY-----AFESEEKA-------RQFLKNVSSLLKPGGYFIGTTP---- 187 (331)
T ss_dssp SSTTS-EEEEEEES-------G----------GG-----GGSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE----
T ss_pred cccCCCcceeehHHH------H----------HH-----hcCCHHHH-------HHHHHHHHHhcCCCCEEEEEec----
Confidence 11247888854211 1 11 01133332 5689999999998655555554
Q ss_pred cCHHHHHHHh
Q 019692 284 ENEDVIKSVL 293 (337)
Q Consensus 284 ENe~vv~~~l 293 (337)
|-+.|-+-|
T Consensus 188 -d~~~i~~~l 196 (331)
T PF03291_consen 188 -DSDEIVKRL 196 (331)
T ss_dssp --HHHHHCCH
T ss_pred -CHHHHHHHH
Confidence 555553333
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00059 Score=61.24 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=50.9
Q ss_pred HHHHHhCCCCCC-eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019692 128 MVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 128 l~~~~l~~~~g~-~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 205 (337)
+.-.+....++. .++|+|||+|--+..+|... .+|+|+|+++.|++.+++.-...-.. ..+....+...+...
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-- 97 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-- 97 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--
Confidence 444444555665 89999999996666677774 57999999999999877653211110 122222233333221
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
.+++|.|++
T Consensus 98 -e~SVDlI~~ 106 (261)
T KOG3010|consen 98 -EESVDLITA 106 (261)
T ss_pred -Ccceeeehh
Confidence 267888874
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0005 Score=64.75 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=57.7
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC-CccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~-~fD~IlvDpP 218 (337)
+|+|++||.|+.+..+... +-..|.|+|+++.+.+..+.|.. ....+|..++.... .. .+|+++.-||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~--l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD--LPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH--HHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------cccccccccccccc--ccccceEEEeccC
Confidence 6899999999999888775 22378999999999999999875 67788888776442 22 5999999999
Q ss_pred CCCccccCc
Q 019692 219 CSGSGTAAE 227 (337)
Q Consensus 219 CSg~G~~~~ 227 (337)
|.+.....+
T Consensus 71 CQ~fS~ag~ 79 (335)
T PF00145_consen 71 CQGFSIAGK 79 (335)
T ss_dssp -TTTSTTST
T ss_pred CceEecccc
Confidence 999887754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=50.75 Aligned_cols=76 Identities=14% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|+|+|++.|..++.++- .+..+|+++|.++...+..+++++.+.+-.=-+...+ .+. .+++||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~e---W~~---~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGE---WNG---EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccc---ccc---cCCCcceEEEE
Confidence 388999999999999988865 4678999999999999999999987754221112222 221 36789999998
Q ss_pred CCCCCc
Q 019692 217 PSCSGS 222 (337)
Q Consensus 217 pPCSg~ 222 (337)
|-|.
T Consensus 100 --CeGC 103 (156)
T PHA01634 100 --CEGC 103 (156)
T ss_pred --ccch
Confidence 6664
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=59.65 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
.+..+||+||-.|..|++||+.++. ..|+|+|||+..++.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence 4678999999999999999999854 68999999999999999998754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.007 Score=54.87 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
....+..+..+|+|+|.|.|..+..+++.. +.-+++..|. +..++.+++ .++|+++.+|+.+.. + .
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~---P--~- 158 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPL---P--V- 158 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCC---S--S-
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhhh---c--c-
Confidence 444566677899999999999999999885 5679999998 777877777 467999999997321 1 2
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC---cEEEEEcCCCCcccCH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV---ERVVYSTCSIHQVENE 286 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~---G~lvYsTCS~~~~ENe 286 (337)
+|+|++ ..++.. |+.++ -..||+++...+++ |+|+-...-+.....+
T Consensus 159 ~D~~~l------~~vLh~-----------------~~d~~-------~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~ 208 (241)
T PF00891_consen 159 ADVYLL------RHVLHD-----------------WSDED-------CVKILRNAAAALKPGKDGRLLIIEMVLPDDRTG 208 (241)
T ss_dssp ESEEEE------ESSGGG-----------------S-HHH-------HHHHHHHHHHHSEECTTEEEEEEEEEECSSSSS
T ss_pred ccceee------ehhhhh-----------------cchHH-------HHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCC
Confidence 899986 112221 23333 26789998886663 5666655544444333
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=52.56 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=55.0
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCC
Q 019692 166 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 242 (337)
Q Consensus 166 ~avD~~~~~l~~l~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~ 242 (337)
+|+|+|+.|++.++++.+..+ ..+|+++++|+.+++..+ ++||.|++ +.+ ++.-+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~-----~~~-l~~~~d------------ 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTM-----GYG-LRNVVD------------ 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEe-----cch-hhcCCC------------
Confidence 489999999999987765432 356999999999987543 57999985 222 211111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 243 DPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 243 ~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
..+.|++..+.+++ |.++....+
T Consensus 60 --------------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --------------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --------------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 24778888888887 677655444
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0015 Score=61.88 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=59.3
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
|+|++||.|+.+..+... +-..+.++|+++.+++..+.|.. + .++.+|..++.... ...+|+++.-|||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence 689999999999888664 22356789999999999888853 2 34567877776433 34689999999999
Q ss_pred CccccCcc
Q 019692 221 GSGTAAER 228 (337)
Q Consensus 221 g~G~~~~~ 228 (337)
+.....++
T Consensus 71 ~fS~ag~~ 78 (315)
T TIGR00675 71 PFSIAGKR 78 (315)
T ss_pred ccchhccc
Confidence 88766543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=56.99 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.5
Q ss_pred eEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
+||++|||.|.....+.+--.+ +-+|+|+|.++++++..+++....- +++.....|+..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc
Confidence 8999999999999888776432 2689999999999999998876543 445555556544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.018 Score=54.86 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH--HHhC---C--CcEEEEeccCCCCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI--KLSG---A--ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~--~~~g---~--~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+.-++||-+|.|-|--.-.+.+. .+-++|+-+|.|++|++.++++. ...+ . .+|++++.|+.++..... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--D 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--c
Confidence 45679999999999766666664 33579999999999999999544 3322 2 359999999988765442 5
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
+||.|++|-|-
T Consensus 365 ~fD~vIVDl~D 375 (508)
T COG4262 365 MFDVVIVDLPD 375 (508)
T ss_pred cccEEEEeCCC
Confidence 89999999883
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=55.60 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=73.7
Q ss_pred CeEEeecCCchhHHHHHHHHcCC----CC----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----C
Q 019692 139 WKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----P 205 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~----~g----~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~ 205 (337)
.+|+|+||+||+++..+++.+.. .+ +|+|||+.+-. .+..|..+++|.+...... -
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999987743 22 49999997532 3567889999988754210 1
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC----CCCC-cEEEEEcCCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS----FPGV-ERVVYSTCSI 280 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~----~~~~-G~lvYsTCS~ 280 (337)
...+.|.|++|-.---+|+ .++.++ .|.++|..|+. .+++ |..| --+
T Consensus 112 ggekAdlVvcDGAPDvTGl-----------------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-----------------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred CCCCccEEEeCCCCCcccc-----------------------ccHHHH--HHHHHHHHHHHHHhheecCCCeee---hhh
Confidence 1247899999954333443 122333 46677777765 3565 6666 356
Q ss_pred CcccCHHHHH
Q 019692 281 HQVENEDVIK 290 (337)
Q Consensus 281 ~~~ENe~vv~ 290 (337)
+..++...+-
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0036 Score=57.33 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=64.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.|..|+=+| --..|...+.+.+-..+|..+|++++.++-..+-++.+|++||+.+..|.++..+.+. ..+||+++-|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeecC
Confidence 466788787 3344444444444457899999999999999999999999999999999998876653 3689999999
Q ss_pred CCCC
Q 019692 217 PSCS 220 (337)
Q Consensus 217 pPCS 220 (337)
||-+
T Consensus 229 PpeT 232 (354)
T COG1568 229 PPET 232 (354)
T ss_pred chhh
Confidence 9965
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.006 Score=53.97 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=43.2
Q ss_pred chhhHHHHHHhCCCC---CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHH
Q 019692 123 GKASSMVAAALAPKP---GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 123 d~ss~l~~~~l~~~~---g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~ 183 (337)
..+|-+....+...+ +-+++|-|||.|+..+.++-+-++. ..|+|.|+|+++++.+++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345666666655443 3489999999999988777664332 479999999999998888765
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0015 Score=58.27 Aligned_cols=127 Identities=10% Similarity=0.136 Sum_probs=78.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+..+=.++||+|||||-.+-.+-.+. .+++++|+|.+|++.+.++ |+- =+..++|+..+.... ...+||.|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y-D~L~~Aea~~Fl~~~-~~er~DLi 192 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY-DTLYVAEAVLFLEDL-TQERFDLI 192 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch-HHHHHHHHHHHhhhc-cCCcccch
Confidence 33445799999999999888887764 6799999999999987764 211 123344444333211 13568887
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc--------
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE-------- 284 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E-------- 284 (337)
..----+-.|. -..++--+..++++ |.+.||.-+.--+-
T Consensus 193 ~AaDVl~YlG~--------------------------------Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~ 240 (287)
T COG4976 193 VAADVLPYLGA--------------------------------LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ 240 (287)
T ss_pred hhhhHHHhhcc--------------------------------hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh
Confidence 53211111221 13556666677776 89999977755442
Q ss_pred ----CHHHHHHHhchhcCCCcEEe
Q 019692 285 ----NEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 285 ----Ne~vv~~~l~~~~~~~~~~~ 304 (337)
.+..|...|+ ..||+++
T Consensus 241 RyAH~~~YVr~~l~---~~Gl~~i 261 (287)
T COG4976 241 RYAHSESYVRALLA---ASGLEVI 261 (287)
T ss_pred hhccchHHHHHHHH---hcCceEE
Confidence 3445555553 4566665
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.051 Score=48.40 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+.++.|+||--|+....+-.. +....+++.|+++..++.+.+++++++.. .+++..+|........ ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~---d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE---DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc---CCcCEEE
Confidence 45777999999999999888775 44568999999999999999999999875 4889999985543322 3688887
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+ .|.|-. +=.+||+.....++. -++| +.|--|+.....+|
T Consensus 91 I----AGMGG~------------------------------lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L 131 (226)
T COG2384 91 I----AGMGGT------------------------------LIREILEEGKEKLKGVERLI-----LQPNIHTYELREWL 131 (226)
T ss_pred E----eCCcHH------------------------------HHHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHH
Confidence 6 344421 115788888887664 5777 47778899999988
Q ss_pred c
Q 019692 294 P 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 132 ~ 132 (226)
T COG2384 132 S 132 (226)
T ss_pred H
Confidence 4
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=58.91 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=74.1
Q ss_pred hcCeEEEechhhHHHHHHhCCC--CCCeEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCC-
Q 019692 115 VNGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA- 188 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~- 188 (337)
..|.++....-..+++..+.+. |+..|.|+|||+|+........+. ....+++.+....+...++.|+.-.|+.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 4577777777777778887765 678999999999998765444332 1246899999999999999998776653
Q ss_pred -cEEEEeccCCCCCCCCCCCCCccEEEECCCCCC
Q 019692 189 -NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 189 -~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg 221 (337)
......+|...-+... ...+||.|+.+||.+.
T Consensus 273 ~t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 273 ANFNIINADTLTTKEWE-NENGFEVVVSNPPYSI 305 (501)
T ss_pred cccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence 2334445533321111 1246999999999875
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0082 Score=54.00 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=54.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~-~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|..+||+|+.|||+|-.+.+. +..+|+|+|.....+. .++. ...-+.....|++.+.+.+- .+..|.|++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~ 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF-TEKPDLIVI 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc-ccCCCeEEE
Confidence 5889999999999999988775 5679999999865443 1221 12224455567777765543 236899999
Q ss_pred CCCCCC
Q 019692 216 DPSCSG 221 (337)
Q Consensus 216 DpPCSg 221 (337)
|...-+
T Consensus 151 DvSFIS 156 (245)
T COG1189 151 DVSFIS 156 (245)
T ss_pred Eeehhh
Confidence 988443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0074 Score=57.24 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcE--EEEeccCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANI--EVLHGDFLNL 200 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~---~g~V~avD~~~~~l~~l~~~~~~~g~~~v--~~~~~D~~~~ 200 (337)
.++..++|+|||.|.|+..+.+.+.. ....+++|+|.+.++.+.+++.....+.| ..+++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 46779999999999999988877642 24689999999999999999984445554 4588888664
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0014 Score=60.60 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=66.5
Q ss_pred hhcCeEEEechhhHHHH--------HHhCC-CCCCeEEeecCCchhHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 114 IVNGCVFLQGKASSMVA--------AALAP-KPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 114 ~~~G~~~~Qd~ss~l~~--------~~l~~-~~g~~VLDl~aG~G~kt~-~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
..+|-.+.=|+.-++.. ..+.. -.|+.|.||+||-|++|+ .+-.. +...|+|+|.++..++.++++++
T Consensus 162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHH
Confidence 35666666665544432 12221 237999999999999998 44332 45799999999999999999999
Q ss_pred HhCCCc-EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 184 LSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 184 ~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+++.. ..++.+|-+...+. ...|.|.+
T Consensus 240 ~N~V~~r~~i~~gd~R~~~~~----~~AdrVnL 268 (351)
T KOG1227|consen 240 ANNVMDRCRITEGDNRNPKPR----LRADRVNL 268 (351)
T ss_pred hcchHHHHHhhhccccccCcc----ccchheee
Confidence 987643 45566776655433 35677765
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=52.02 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-------~~~v~~~~~D~~~~~~~~ 204 (337)
..-.+.|+|||.||....++.+. +...|++.||-....+..++++..++ ..|+.+...++..+.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 34578999999999999999985 56789999999988888888888776 678888888877766553
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0025 Score=64.08 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~~~~ 209 (337)
++++..|||+||+||++....++.++.++.|+|+|+-+-. -+.|+..++.|++.-.-. ....-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999999888899999997633 234555555554321100 000124
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
.|+||.|.--+
T Consensus 111 advVLhDgapn 121 (780)
T KOG1098|consen 111 ADVVLHDGAPN 121 (780)
T ss_pred CcEEeecCCCc
Confidence 69999996433
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.018 Score=50.86 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCC-----CCCCcc
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDP-----AYSEVR 211 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~-----~~~~fD 211 (337)
+.+||+++||+|-++.++|+.+. .-.-.-.|.++..+...+..+...|..|+ ..+..|+........ ....||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 44699999999999999999984 35677889999999999999998888874 355666665432211 134789
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-c-EEEEEcCCCCc---ccCH
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-E-RVVYSTCSIHQ---VENE 286 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G-~lvYsTCS~~~---~ENe 286 (337)
.|++ ..+ + + +...+. -..++..|.++|++ | .++|---...- -|..
T Consensus 105 ~i~~----~N~--l-----H------------------I~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN 154 (204)
T PF06080_consen 105 AIFC----INM--L-----H------------------ISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESN 154 (204)
T ss_pred eeee----hhH--H-----H------------------hcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHH
Confidence 9983 221 1 1 111111 25677788887776 5 57777655432 2333
Q ss_pred HHHHHHhc
Q 019692 287 DVIKSVLP 294 (337)
Q Consensus 287 ~vv~~~l~ 294 (337)
...+.-|+
T Consensus 155 ~~FD~sLr 162 (204)
T PF06080_consen 155 AAFDASLR 162 (204)
T ss_pred HHHHHHHh
Confidence 34445553
|
The function of this family is unknown. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.029 Score=52.64 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=80.3
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~----~v~~~~~D~~~ 199 (337)
|+|+-..+ ++++.++|+|||-||-.+-.-.. +-+.++++||.+--++.++++.+.+-- . .+.++.+|-..
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55655554 57999999999999987765543 347899999999999999887765421 1 25677776543
Q ss_pred CCCCC---CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 019692 200 LDPKD---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 276 (337)
Q Consensus 200 ~~~~~---~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYs 276 (337)
....+ ....+||+|=|-=- + |. ...|.+. -+.+|+++.+.|+||.+...
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~------~----------HY-----aFetee~-------ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFA------F----------HY-----AFETEES-------ARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeee------E----------ee-----eeccHHH-------HHHHHHHHHhhcCCCcEEEE
Confidence 21100 00122666633211 1 11 1112222 24678899999988655554
Q ss_pred cCCCCcccCHHHHHHHhc
Q 019692 277 TCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l~ 294 (337)
|-- |-++|-+=|.
T Consensus 236 TiP-----dsd~Ii~rlr 248 (389)
T KOG1975|consen 236 TIP-----DSDVIIKRLR 248 (389)
T ss_pred ecC-----cHHHHHHHHH
Confidence 433 6677766664
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.056 Score=49.85 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=53.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+||=+|.|-|+..-.+.+. + .+|+-||+|+..++.+++.+... +. ++++++.. +.... .++||+|
T Consensus 73 pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~--~~~fDVI 143 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLD--IKKYDLI 143 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhcc--CCcCCEE
Confidence 579999999999999888876 2 49999999999999999966543 23 34777651 11111 2579999
Q ss_pred EECC
Q 019692 214 LLDP 217 (337)
Q Consensus 214 lvDp 217 (337)
++|-
T Consensus 144 IvDs 147 (262)
T PRK00536 144 ICLQ 147 (262)
T ss_pred EEcC
Confidence 9993
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0078 Score=57.41 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=62.6
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+++|++||.||..+.+... +-.-+.++|+++.+++..+.|... ..++..|...+....-....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 47999999999999877765 234689999999999999988653 34566676665543211117899999999
Q ss_pred CCCccccCcc
Q 019692 219 CSGSGTAAER 228 (337)
Q Consensus 219 CSg~G~~~~~ 228 (337)
|-+..+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9998877655
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0023 Score=56.54 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D 204 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~----~ 204 (337)
+...+.+.+|...+||.-|.||.|..+.+.- ...+++|.|.+|-+-+.++...+.+=-..+..+.+.|..++.- .
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 4567889999999999999999999988874 4578999999999888887776433112233344444433210 0
Q ss_pred CCCCCccEEEECCCCCCc
Q 019692 205 PAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~ 222 (337)
-....||.|+.|--||+.
T Consensus 114 l~~~~vDGiLmDlGcSSM 131 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSM 131 (303)
T ss_pred CCcCCcceEEeecCcccc
Confidence 012579999999999975
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=57.14 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 204 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 204 (337)
.-+++|++||.||.+..+-.. +-..|.++|+++.+.+..+.|... ..+...+++|..++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999888654 224678999999999988887421 122344556666554210
Q ss_pred -CCCCCccEEEECCCCCCccccC
Q 019692 205 -PAYSEVRAILLDPSCSGSGTAA 226 (337)
Q Consensus 205 -~~~~~fD~IlvDpPCSg~G~~~ 226 (337)
.....+|+++.-|||-+..+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0123689999999999876654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.014 Score=54.55 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
.+|+.|||.++|+|..+. +|..+ +.+.+|+|++++.++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999995443 34443 46899999999999999999864
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0036 Score=60.46 Aligned_cols=64 Identities=30% Similarity=0.336 Sum_probs=56.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLD 201 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~v~~~~~D~~~~~ 201 (337)
.++|+.|-|+|||.|-.++.++.. ..+|+|+|.++++++.++.|++.+.+. +|++++.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999998888775 389999999999999999999988774 4999999987765
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.025 Score=52.60 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=39.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
..+|||+|||||.-+..+.+.++....++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 468999999999877767777665568999999999999888877654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.056 Score=50.83 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=67.6
Q ss_pred CCCchhhhcCeEEEechhh-HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 108 LHVHPLIVNGCVFLQGKAS-SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 108 ~~~~~~~~~G~~~~Qd~ss-~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
+++.-.+.+|.+ +|..|- .-+.....+++|.+||=+||||=|....++...-+..+|+.+|+++.|++.+++ +|
T Consensus 140 LPd~vs~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~G 214 (354)
T KOG0024|consen 140 LPDNVSFEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FG 214 (354)
T ss_pred CCCCCchhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hC
Confidence 444455666644 444442 333455678999999999999977655444443467899999999999998876 68
Q ss_pred CCcEEEEeccCCCCC------CCCCCCCCccEEEECCCCCCccc
Q 019692 187 AANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGT 224 (337)
Q Consensus 187 ~~~v~~~~~D~~~~~------~~~~~~~~fD~IlvDpPCSg~G~ 224 (337)
...+....... ... ........+|+.| -|||..+
T Consensus 215 a~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~~~---dCsG~~~ 254 (354)
T KOG0024|consen 215 ATVTDPSSHKS-SPQELAELVEKALGKKQPDVTF---DCSGAEV 254 (354)
T ss_pred CeEEeeccccc-cHHHHHHHHHhhccccCCCeEE---EccCchH
Confidence 76544433322 111 0000113488887 3998753
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.036 Score=51.44 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=47.1
Q ss_pred CeEEeecCCchhHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 139 WKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIK-LSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~-la~~~~~~g~V~avD~~~~~l~~l~~~~~-~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+|+=+||||=-.|.. +++....+..|+++|+|+.+.+.+++-++ ..|+. .+.++.+|..+.... ...||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEEE
Confidence 4999999998776654 55544445689999999999999999887 55654 499999998876533 357999998
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-+-
T Consensus 199 Aal 201 (276)
T PF03059_consen 199 AAL 201 (276)
T ss_dssp -TT
T ss_pred hhh
Confidence 654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.051 Score=50.80 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=65.4
Q ss_pred CeEEeecCCchhHHHH----HHHHcC---CCCEEEEEeCCHHHHHHHHHHH--------------HHh---------C--
Q 019692 139 WKVLDACSAPGNKTVH----LAALMK---GKGKIVACELNKERVRRLKDTI--------------KLS---------G-- 186 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~----la~~~~---~~g~V~avD~~~~~l~~l~~~~--------------~~~---------g-- 186 (337)
-+|+.+||++|-=... +.+..+ ...+|+|.|+|..+++.|++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999999999974333 333322 1357999999999999988752 000 1
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ +.|++...|..+.+... .+.||+|+| -.. +- +. -.+.|.++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~c----RNv--li-----------------yF-------~~~~~~~v 244 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFC----RNV--MI-----------------YF-------DKTTQERI 244 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCcc--CCCcceeeH----hhH--Hh-----------------cC-------CHHHHHHH
Confidence 1 23777777776532211 257999984 221 10 00 12347888
Q ss_pred HHHHhCCCCC-cEEEE
Q 019692 261 LRHALSFPGV-ERVVY 275 (337)
Q Consensus 261 L~~A~~~~~~-G~lvY 275 (337)
++.....+++ |.|+.
T Consensus 245 l~~l~~~L~pgG~L~l 260 (287)
T PRK10611 245 LRRFVPLLKPDGLLFA 260 (287)
T ss_pred HHHHHHHhCCCcEEEE
Confidence 9998888887 66554
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.13 Score=45.76 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=78.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..|.+||.+|-|-|-..+.+.+. +-.+-+-+|.++..++++++..-+- -.||.++.+-.++..+..+ .+.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~-d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLP-DKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcccc-ccCcceeEe
Confidence 57999999999999988877765 3356677899999999988876443 2578888887776655543 356999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
|.= .. .-+++ +..-+++.+++|| |.+.| |-..-.-|
T Consensus 176 DTy-------~e------------------~yEdl-------~~~hqh~~rLLkP~gv~Sy--fNg~~~~~ 212 (271)
T KOG1709|consen 176 DTY-------SE------------------LYEDL-------RHFHQHVVRLLKPEGVFSY--FNGLGADN 212 (271)
T ss_pred ech-------hh------------------HHHHH-------HHHHHHHhhhcCCCceEEE--ecCcccch
Confidence 842 00 12233 3334489999998 65555 65555544
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.02 Score=50.63 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
-.+|+.|||.+||+|..+. +|..+ +.+.+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3679999999999996443 34443 3679999999999988764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.03 Score=49.90 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
-.+.||+|||-|..|-.+..-+ -.+|..+|..+..++.+++.+...+-...++.+.-.+++.+.. .+||+|.+-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEeh
Confidence 5689999999999998763322 3689999999999999998765422233677777777776552 589999873
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.39 Score=37.96 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.2
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCCCCCCCccEE
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKDPAYSEVRAI 213 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~--~~~~~~~~~~fD~I 213 (337)
++|+|||+|..+ .++........++++|.++.++...+......+...+.+...|... .+.... ..||.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEE
Confidence 999999999877 4555432223899999999999985555433222226777777665 332210 257777
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.037 Score=49.99 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
..+|+.|||.+||+|....+. ..+ +.+.+++|+++.-.+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa-~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAA-LQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHH-HHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999654433 333 357999999999999999988764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.51 Score=40.44 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=88.6
Q ss_pred cCCchhHHHHHHHHcCCCCEEEEEeCC--HHHHH---HHHHHHHHhCCCcEE-EEeccCCCCCCCC-CCCCCccEEEECC
Q 019692 145 CSAPGNKTVHLAALMKGKGKIVACELN--KERVR---RLKDTIKLSGAANIE-VLHGDFLNLDPKD-PAYSEVRAILLDP 217 (337)
Q Consensus 145 ~aG~G~kt~~la~~~~~~g~V~avD~~--~~~l~---~l~~~~~~~g~~~v~-~~~~D~~~~~~~~-~~~~~fD~IlvDp 217 (337)
|=|--+++..++...+....|+|.-.+ ....+ .+..|++.+.-.++. ....|++.+.... .....||+|+-+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 334444566777776544567665543 33333 244666665333333 3456888887554 1236799999999
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchh
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIA 296 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~ 296 (337)
|+.|.|.- .....+....++=...+..|..++++ |.|.-+-|.-.|- +.-.|... +
T Consensus 84 PH~G~~~~-------------------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~l---A 140 (166)
T PF10354_consen 84 PHVGGGSE-------------------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEEL---A 140 (166)
T ss_pred CCCCCCcc-------------------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHH---H
Confidence 99984421 13556667777778889999998886 8888888887775 55566544 3
Q ss_pred cCCCcEEec
Q 019692 297 MSFGFQLAT 305 (337)
Q Consensus 297 ~~~~~~~~~ 305 (337)
.+.|+.+..
T Consensus 141 ~~~gl~l~~ 149 (166)
T PF10354_consen 141 AEAGLVLVR 149 (166)
T ss_pred HhcCCEEEE
Confidence 466777764
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.082 Score=46.95 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=63.9
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchh--HHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~--kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
|..++-++..+..-..-..+++.+|+-|. .|+.||... +.+|++++|-.++..+...++.+..+|..+ ++|+.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 44444555544443445688999766443 455554443 345899999999999999999999888866 68888874
Q ss_pred -CCCCCCCCCCCCccEEEECC
Q 019692 198 -LNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 198 -~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+.+. +..+|++++|-
T Consensus 106 ~e~~~~~---~~~iDF~vVDc 123 (218)
T PF07279_consen 106 PEEVMPG---LKGIDFVVVDC 123 (218)
T ss_pred HHHHHhh---ccCCCEEEEeC
Confidence 334332 46799999993
|
The function of this family is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.089 Score=46.65 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++..|-|+|||-+..+ +.+.+.-+|+..|+... |=.++.+|..+.|..+ +.+|+++
T Consensus 70 ~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~---~svDv~V 127 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLED---ESVDVAV 127 (219)
T ss_dssp S-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S--T---T-EEEEE
T ss_pred cCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcCCC---CceeEEE
Confidence 334579999999999655 34444468999998642 1135668988888665 6799998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE-cCCCCcccCHHHHHHH
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS-TCSIHQVENEDVIKSV 292 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs-TCS~~~~ENe~vv~~~ 292 (337)
.--.=. |+ + -...|..|.+.|++ |.|... .+| .-+|. +.|
T Consensus 128 fcLSLM--GT----------------n---------------~~~fi~EA~RvLK~~G~L~IAEV~S--Rf~~~---~~F 169 (219)
T PF05148_consen 128 FCLSLM--GT----------------N---------------WPDFIREANRVLKPGGILKIAEVKS--RFENV---KQF 169 (219)
T ss_dssp EES-----SS--------------------------------HHHHHHHHHHHEEEEEEEEEEEEGG--G-S-H---HHH
T ss_pred EEhhhh--CC----------------C---------------cHHHHHHHHheeccCcEEEEEEecc--cCcCH---HHH
Confidence 732211 11 1 14789999998887 544333 333 33343 444
Q ss_pred hchhcCCCcEEec
Q 019692 293 LPIAMSFGFQLAT 305 (337)
Q Consensus 293 l~~~~~~~~~~~~ 305 (337)
++.-...||++..
T Consensus 170 ~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 170 IKALKKLGFKLKS 182 (219)
T ss_dssp HHHHHCTTEEEEE
T ss_pred HHHHHHCCCeEEe
Confidence 4433567888753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.085 Score=48.02 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+.++|+|+|||-=-.++..-.. .++..++|+|+|...++.+..-+..+|.. ..+...|...-++. ...|+.|+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~----~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK----EPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT----SEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC----CCcchhhH
Confidence 44789999999999887765443 23469999999999999999999999865 66666676654332 34677774
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.065 Score=52.22 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=48.5
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
.|||+|+|+|-.+.+.+... ...|+|+|.-..|.+.+++.+.++|.. +|.+++...++
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 58999999999888776653 467999999999999999999999984 58887765444
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.19 Score=47.94 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=51.5
Q ss_pred hCCCCCCeEEeecCC-chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG-~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
..++||++|+=.|+| .|..+.++|+.++ .+|+++|++++.++.+++ +|.+.+.... |....... .+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~-~~~~~~~~---~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS-DSDALEAV---KEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC-CchhhHHh---HhhCc
Confidence 457899999988887 4457888888774 899999999999887664 5655322212 22222111 12399
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
.|+.-.|
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9998777
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.05 Score=48.18 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred CeEEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 117 GCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
|...+|.+.-+++...+- --..+.|+++|...||.+..+|+++ ++.++|+++|++-+..........-+ .+.|++
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~ 89 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITF 89 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEE
Confidence 667777777666544321 1135699999999999998887654 56799999999755543222111111 156999
Q ss_pred EeccCCCCCCC-----CCCCCCccEEEECCC
Q 019692 193 LHGDFLNLDPK-----DPAYSEVRAILLDPS 218 (337)
Q Consensus 193 ~~~D~~~~~~~-----~~~~~~fD~IlvDpP 218 (337)
+.+|..+.... .........|+.|.-
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 99998764311 111134568888866
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.36 Score=44.71 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCeEEeecCCchh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHH------H---------HHh------C--
Q 019692 138 GWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDT------I---------KLS------G-- 186 (337)
Q Consensus 138 g~~VLDl~aG~G~----kt~~la~~~~~----~g~V~avD~~~~~l~~l~~~------~---------~~~------g-- 186 (337)
.-+|+-++|++|- .+..+.+..+. ..+|+|.|+|...++.|+.- . +++ |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4589999999995 34444555432 46899999999999987642 1 111 1
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 019692 187 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 260 (337)
Q Consensus 187 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 260 (337)
+ +.|.+...|...-.+ ..+.||+|+| |+.=+ |. -...|.++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfC-----------RNVLI------------YF-------d~~~q~~i 223 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFC-----------RNVLI------------YF-------DEETQERI 223 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEE-----------cceEE------------ee-------CHHHHHHH
Confidence 0 135556666554432 1367999996 12111 11 13458899
Q ss_pred HHHHhCCCCCcEEEEE
Q 019692 261 LRHALSFPGVERVVYS 276 (337)
Q Consensus 261 L~~A~~~~~~G~lvYs 276 (337)
++.-...+++|.++|.
T Consensus 224 l~~f~~~L~~gG~Lfl 239 (268)
T COG1352 224 LRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 9998888887555553
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.25 Score=51.62 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=76.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC------C-----CCEEEEEeCCHHHHHHHHHHH--------------HH-----hC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK------G-----KGKIVACELNKERVRRLKDTI--------------KL-----SG 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~------~-----~g~V~avD~~~~~l~~l~~~~--------------~~-----~g 186 (337)
+.-+|+|+|-|+|..++...+... + .-+++++|..+-..+.+++.+ +. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998777766551 1 237899998653222222211 11 13
Q ss_pred CC---------cEEEEeccCCCCCCCCCCCCCccEEEECC--CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHH
Q 019692 187 AA---------NIEVLHGDFLNLDPKDPAYSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 255 (337)
Q Consensus 187 ~~---------~v~~~~~D~~~~~~~~~~~~~fD~IlvDp--PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (337)
+. ++++..+|+.+..+... ..||+|++|+ | .++|+. |+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP-------~~np~~-------------W~--------- 185 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAP-------AKNPDM-------------WS--------- 185 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCC-------ccChhh-------------cc---------
Confidence 21 25567788876554432 4699999996 5 456664 12
Q ss_pred HHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 256 FQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 256 ~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+++....++.++ |+++--|+ ...|.+-|. ..||++..
T Consensus 186 --~~~~~~l~~~~~~~~~~~t~t~-------a~~vr~~l~---~~GF~v~~ 224 (662)
T PRK01747 186 --PNLFNALARLARPGATLATFTS-------AGFVRRGLQ---EAGFTVRK 224 (662)
T ss_pred --HHHHHHHHHHhCCCCEEEEeeh-------HHHHHHHHH---HcCCeeee
Confidence 4556666666666 55552233 377887774 45787753
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.16 Score=46.49 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+|....|+||+|||.|.++-+. .-.|++||.-+-+ .++-.. ..|+-...|...+.+.. .+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dt--g~v~h~r~DGfk~~P~r---~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDT--GQVTHLREDGFKFRPTR---SNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcc--cceeeeeccCcccccCC---CCCceEE
Confidence 468999999999999999988764 5799999976532 222222 34888889988887632 5789999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
||.-
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 9853
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.43 Score=43.68 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=71.2
Q ss_pred HHhCCCC-CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~-g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+...+ ...|.|+|||-+-.+. +....|+++|+.. .|=.++.+|..+++..+ ++
T Consensus 173 ~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d---~s 228 (325)
T KOG3045|consen 173 RKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA---------------VNERVIACDMRNVPLED---ES 228 (325)
T ss_pred HHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec---------------CCCceeeccccCCcCcc---Cc
Confidence 3344444 4578999999996554 2346799999753 23457788999988765 68
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv 289 (337)
+|+++. |-++ +.- ++ ...+..|.+.|++|.++|..---+..+.-...
T Consensus 229 vDvaV~---CLSL--Mgt-------------n~---------------~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f 275 (325)
T KOG3045|consen 229 VDVAVF---CLSL--MGT-------------NL---------------ADFIKEANRILKPGGLLYIAEVKSRFSDVKGF 275 (325)
T ss_pred ccEEEe---eHhh--hcc-------------cH---------------HHHHHHHHHHhccCceEEEEehhhhcccHHHH
Confidence 999886 4321 110 01 46788999999988788864433444443333
Q ss_pred HHHhchhcCCCcEEe
Q 019692 290 KSVLPIAMSFGFQLA 304 (337)
Q Consensus 290 ~~~l~~~~~~~~~~~ 304 (337)
.+.| ..-||++.
T Consensus 276 ~r~l---~~lGF~~~ 287 (325)
T KOG3045|consen 276 VRAL---TKLGFDVK 287 (325)
T ss_pred HHHH---HHcCCeee
Confidence 3333 34455554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.37 Score=46.31 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q 019692 134 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~ 181 (337)
...++++|+=+||||=|.. .++++. .+..+|+++|.++.+++.+++.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 3455669999999997654 555555 4568999999999999988774
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.21 Score=44.88 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEec-cCCCCCCCC-CCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAAN-IEVLHG-DFLNLDPKD-PAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~-v~~~~~-D~~~~~~~~-~~~~~fD~ 212 (337)
++-++||+|.|.--+--.+..... +-+-++.|+|+..++.++.++..+ ++.+ |++... |...+-+.. ...+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456889998876544333333222 247889999999999999999887 6655 766554 332222211 11357999
Q ss_pred EEECCCCCCc
Q 019692 213 ILLDPSCSGS 222 (337)
Q Consensus 213 IlvDpPCSg~ 222 (337)
++|+||.-++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999996543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.9 Score=40.22 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+||=.| |+|..+.+++..+... .+|++++.+..............+. .+++++.+|..+.......+..+|.|+.
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676444 6899999988876433 4788888765443322222111122 3688999998765422111245799998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEM-ERLNKLSAFQKKALRHALSFPGVERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsT 277 (337)
-+....... .. .. +....-..-...+|+.+.+....+.+||++
T Consensus 83 ~A~~~~~~~--~~-----------------~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~S 126 (322)
T PLN02662 83 TASPFYHDV--TD-----------------PQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTS 126 (322)
T ss_pred eCCcccCCC--CC-----------------hHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 775432110 00 11 222233444566777766543446777753
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.7 Score=38.29 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=78.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il 214 (337)
.+|.. |...+|+--.+.++ ++...++.++|+.++-...++.++. +..+|++..+|...... ..+...+=-.|+
T Consensus 88 N~~~~-l~~YpGSP~lA~~l---lR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVL 161 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQL---LREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVL 161 (279)
T ss_pred CCCCC-cccCCCCHHHHHHH---cchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence 45555 88888887555444 4456799999999999999999987 56789999999654221 111123345899
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+|||.-- +++..++. +-|+.+++.-..|.. |-+.|.-+-..+++|++
T Consensus 162 IDPPfE~-------------------------~~eY~rvv----~~l~~~~kRf~~g~y----aiWYPik~r~~~~~f~~ 208 (279)
T COG2961 162 IDPPFEL-------------------------KDEYQRVV----EALAEAYKRFATGTY----AIWYPIKDRRQIRRFLR 208 (279)
T ss_pred eCCCccc-------------------------ccHHHHHH----HHHHHHHHhhcCceE----EEEEeecchHHHHHHHH
Confidence 9999421 22233333 334445442232432 33677778888888886
Q ss_pred hhcC
Q 019692 295 IAMS 298 (337)
Q Consensus 295 ~~~~ 298 (337)
..+.
T Consensus 209 ~L~~ 212 (279)
T COG2961 209 ALEA 212 (279)
T ss_pred HHhh
Confidence 4433
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.81 E-value=2 Score=40.30 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+||-.| |+|+.+.+++..+. .+..|+++..+..............+. .++.++.+|..+..........+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356777665 78889999887653 335788777766544433222222232 358888999877542211123579888
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 8653
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.1 Score=43.89 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHh-----CC---CcEEEEeccCCCCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS-----GA---ANIEVLHGDFLNLDPK 203 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~-----g~---~~v~~~~~D~~~~~~~ 203 (337)
++.+.|..||-.| |+|+.+.++++.+ ..+..|++++.+...+..+.+.+... |. .++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445677777555 5688888887765 34468999999988887766655442 21 2488899998865422
Q ss_pred CCCCCCccEEEEC
Q 019692 204 DPAYSEVRAILLD 216 (337)
Q Consensus 204 ~~~~~~fD~IlvD 216 (337)
...++.+|+||+.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 2224578999874
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.2 Score=35.41 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=67.7
Q ss_pred chhhHHHHHH-hC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 123 GKASSMVAAA-LA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~-l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
|+.+..++.. ++ ..++.+|+-+||=+-...+ .........++-.|.|.+-- .+|- + .++.-|....
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF~--------~~~~-~-~F~fyD~~~p 76 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRFE--------QFGG-D-EFVFYDYNEP 76 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchHH--------hcCC-c-ceEECCCCCh
Confidence 4444444443 33 2356789877776665444 33233456889999986543 2332 2 3555555443
Q ss_pred C---CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 201 D---PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 201 ~---~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
. ... .++||+|++|||- + +.+- +.+....+..+.++ +.|+.+
T Consensus 77 ~~~~~~l--~~~~d~vv~DPPF-----l--------------------~~ec-------~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 77 EELPEEL--KGKFDVVVIDPPF-----L--------------------SEEC-------LTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhhc--CCCceEEEECCCC-----C--------------------CHHH-------HHHHHHHHHHHhCccceEEEe
Confidence 2 111 2589999999995 1 1111 12222222223343 677763
Q ss_pred cCCCCcccCHHHHHHHh
Q 019692 277 TCSIHQVENEDVIKSVL 293 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l 293 (337)
..++++..+.+.|
T Consensus 123 ----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 ----TGEEMEELIKKLL 135 (162)
T ss_pred ----cHHHHHHHHHHHh
Confidence 5788999999888
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.81 Score=43.12 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
+.+..+++||++|.=.|.|.=|.+..+.....+..+|+++|++++..+.++ .+|+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT 239 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT 239 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcc
Confidence 345578899999999999988888888777778899999999999998765 45653
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.55 Score=41.20 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=37.1
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHH
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 173 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~ 173 (337)
+..+++|++|+|+--|.|++|..++..++++|.|+++-..+.
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 456899999999999999999999999999999999765544
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.25 Score=43.15 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHH------------HHHHhC-CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 147 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKD------------TIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 147 G~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~------------~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
|.|+.++.+|..+... .+|+++|+++++++.+++ .+++.. -.+..+. .|.... ....|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a------i~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA------IKDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH------HHH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh------hhccce
Confidence 5555555555544333 599999999999887552 222221 1233333 222211 134688
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
+|+-.|.--.+ .+.+|+ ..+ ...++...+.+++|.+|---+|+-|.-.++++..+
T Consensus 80 ~~I~VpTP~~~--~~~~Dl----------------s~v-------~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~i 134 (185)
T PF03721_consen 80 VFICVPTPSDE--DGSPDL----------------SYV-------ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPI 134 (185)
T ss_dssp EEE----EBET--TTSBET----------------HHH-------HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHH
T ss_pred EEEecCCCccc--cCCccH----------------HHH-------HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhh
Confidence 88877743322 122232 111 22333333344557888888999999999999999
Q ss_pred hchhcC--CCcEEecCCCCCCcchh
Q 019692 293 LPIAMS--FGFQLATPFPNGTAEAS 315 (337)
Q Consensus 293 l~~~~~--~~~~~~~~~~~~~~~~~ 315 (337)
|+.... .+|.+.. .|+.-..|.
T Consensus 135 le~~~~~~~~f~la~-~PErl~~G~ 158 (185)
T PF03721_consen 135 LEKRSGKKEDFHLAY-SPERLREGR 158 (185)
T ss_dssp HHHHCCTTTCEEEEE-------TTS
T ss_pred hhhhcccccCCeEEE-CCCccCCCC
Confidence 975433 4566643 355545443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.4 Score=46.47 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=67.4
Q ss_pred CchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----------C--CCCCCCCCCccEE
Q 019692 147 APGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----------L--DPKDPAYSEVRAI 213 (337)
Q Consensus 147 G~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~----------~--~~~~~~~~~fD~I 213 (337)
|-|+.++.+|..+.. +.+|+++|+++.+++.+.+- - ..+..-+... + ..........|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----~--~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----E--SYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----c--ceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 566666666555433 36899999999999865432 1 1111111100 0 0000011256888
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHh
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
++-.|---.+ .+.||+.. + .+..+...+.++.|.||-.--|..|.-.|+++..+|
T Consensus 89 iI~VPTPl~~--~~~pDls~----------------v-------~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 89 IICVPTPLKK--YREPDLSY----------------V-------ESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred EEEecCCcCC--CCCCChHH----------------H-------HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 8777743333 24555311 1 223334445677788888888899999999999999
Q ss_pred ch
Q 019692 294 PI 295 (337)
Q Consensus 294 ~~ 295 (337)
+.
T Consensus 144 e~ 145 (436)
T COG0677 144 EE 145 (436)
T ss_pred hh
Confidence 64
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=3.8 Score=38.65 Aligned_cols=83 Identities=10% Similarity=0.136 Sum_probs=48.8
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
|.+..+.+||=. .|+|..+.+++..+-.. .+|+++..+......... +... ...++.++.+|..+..........+
T Consensus 4 ~~~~~~~~vlIt-G~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTACVI-GGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEEEE-CCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 345557777744 46699999998876433 478877766543322221 1111 1235888999987653211112457
Q ss_pred cEEEECC
Q 019692 211 RAILLDP 217 (337)
Q Consensus 211 D~IlvDp 217 (337)
|.|+.-+
T Consensus 82 d~vih~A 88 (338)
T PLN00198 82 DLVFHVA 88 (338)
T ss_pred CEEEEeC
Confidence 9888755
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.65 Score=44.94 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=65.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~ 209 (337)
.....+++..++|++||.|+.+..++..- ...++++|.++..+.+........++++ -.++.+|+...+..+ ..
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~ 178 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NT 178 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cc
Confidence 33456788899999999999999998873 4689999999999999888888887765 445778888887665 56
Q ss_pred ccEEE-ECCCC
Q 019692 210 VRAIL-LDPSC 219 (337)
Q Consensus 210 fD~Il-vDpPC 219 (337)
||.+- +|.-|
T Consensus 179 fd~v~~ld~~~ 189 (364)
T KOG1269|consen 179 FDGVRFLEVVC 189 (364)
T ss_pred cCcEEEEeecc
Confidence 77663 44444
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=3.9 Score=36.79 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.++|=.| |+|+.+.++++.+. .+.+|+.++.+...++.+.+.+...+. ++.++.+|..+...- .....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466788666 67788888887663 235899999998888877777665543 477888898764311 01124
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.+|.|+..+..+
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.86 Score=38.25 Aligned_cols=70 Identities=26% Similarity=0.232 Sum_probs=55.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
+.-.+.++.+|+|+|-|..-++.++. +...-+++|+++..+...+-..-+.|+.. +.+...|....+..+
T Consensus 68 l~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred ccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 33456678999999999988877775 23567999999999999998888888854 888888887766443
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.9 Score=38.90 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+||=.| |+|..+.++++.+... ..|++++.+......+...+.. ..+++++.+|..+..........+|.|+.-
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 66788665 5799999988876433 4899988876554443333221 245888889987643211112357999887
Q ss_pred CCCCC
Q 019692 217 PSCSG 221 (337)
Q Consensus 217 pPCSg 221 (337)
+..++
T Consensus 87 A~~~~ 91 (353)
T PLN02896 87 AASME 91 (353)
T ss_pred Ccccc
Confidence 76544
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.5 Score=37.26 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+|| +.-|+|..+.+++..+.. +.+|+++..+....+.........+. .+++++.+|..+...-......+|.|+
T Consensus 4 ~~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 4 GGKLVC-VTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 355666 555889999998886533 34788766555443333332222222 358889999876542211123579898
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 83 h~A~ 86 (322)
T PLN02986 83 HTAS 86 (322)
T ss_pred EeCC
Confidence 8654
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=88.01 E-value=3.7 Score=38.78 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~---g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
|.+||=.| |+|+.+.+++..+... ..|++++.+......+.+.+ +-.++.++.+|..+...-...+..+|.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 5788999988865322 47999988765443332222 22458889999887542211124589998
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+-
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 7554
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=18 Score=32.71 Aligned_cols=80 Identities=11% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCCCCCc
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPAYSEV 210 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~~~~f 210 (337)
|.++|-.|++ |+.+..++..+- .+.+|+.++.+...++.+.+.++...-.++.++..|+.+.... ...++.+
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 5677766644 567777776553 3458999999998888877776554223578888888764311 0113568
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|.++..+-
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 98887653
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.95 E-value=15 Score=32.49 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=53.1
Q ss_pred eEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-------CCCCCCCCcc
Q 019692 140 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-------PKDPAYSEVR 211 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~-------~~~~~~~~fD 211 (337)
+||=.| |+|+.+..++..+. .+.+|++++.+....+.+...++..+ .++.++..|..+.. .........|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 67888888887653 34589999999888887777666554 35888888887643 1111134579
Q ss_pred EEEECCCCC
Q 019692 212 AILLDPSCS 220 (337)
Q Consensus 212 ~IlvDpPCS 220 (337)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999876543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.39 Score=47.82 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=53.7
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEe-----CCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACE-----LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD-----~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+||+|||+|+++..|.+. .|+.+- ..+..++.+- +.|+.-+.-+- -...++..+ +.||.|=
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~~-~s~rLPfp~---~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFAL----ERGVPAMIGVL-GSQRLPFPS---NAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhh----hcCcchhhhhh-ccccccCCc---cchhhhh
Confidence 6899999999999888774 233333 2333333322 23554321111 123344332 5788885
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
||...+- | .+.+ -.+|-..-++|++ |.+|+|.=-+.
T Consensus 187 ----csrc~i~-------W------------~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 ----CSRCLIP-------W------------HPND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ----ccccccc-------c------------hhcc--------cceeehhhhhhccCceEEecCCccc
Confidence 7765420 1 1111 1245555566776 89999877666
|
; GO: 0008168 methyltransferase activity |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.9 Score=41.14 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
+.+.+++++|++|.=.|+|-=+.+......+.+.++|+|+|+++++++.++ ++|..
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT 232 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGAT 232 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCc
Confidence 456678999999999999877766666555567889999999999998765 45653
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.69 Score=41.67 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
.++-...+.+ ..-.++|+||+.|...-++... +-++++-+|.|..|++.++..-. .++. +....+|-+.++...
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd-p~i~-~~~~v~DEE~Ldf~e- 135 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD-PSIE-TSYFVGDEEFLDFKE- 135 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC-CceE-EEEEecchhcccccc-
Confidence 3444444443 3468999999999998887653 35789999999999988765421 2322 455667766666443
Q ss_pred CCCCccEEEE
Q 019692 206 AYSEVRAILL 215 (337)
Q Consensus 206 ~~~~fD~Ilv 215 (337)
++||.|+.
T Consensus 136 --ns~DLiis 143 (325)
T KOG2940|consen 136 --NSVDLIIS 143 (325)
T ss_pred --cchhhhhh
Confidence 67899873
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.14 Score=45.28 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
..++||+|||-|-.|.+|+..+ .+|+|.|.|..|..++++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4689999999999999998876 469999999888766543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=86.64 E-value=10 Score=36.10 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHH-HHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRL-KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l-~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+||=.| |+|..+.+++..+.. +.+|++++.+....... ...+.. +..++.++.+|..+...-......+|.|+
T Consensus 9 ~~~~vlVTG-atGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTG-AGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 466788665 578999988876533 35899988875543211 111211 12358888899876432211124578888
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=9.3 Score=34.74 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=54.2
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~------~~~~~ 209 (337)
+..+|-.| |+|+.+..++..+ ..+..|++++.+++.++...+.+...+. .++.++..|..+..... ...+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566555 5666777776654 3345899999998888777766665554 35888889987643210 11246
Q ss_pred ccEEEECCCCCC
Q 019692 210 VRAILLDPSCSG 221 (337)
Q Consensus 210 fD~IlvDpPCSg 221 (337)
+|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799998765443
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=7.7 Score=34.57 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+|| +..|+|+.+.+++..+. .+.+|+.++.++...+.+...++..+ .++.++..|+.+...-. ...+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 44567888888888653 33589999999988887777776655 35788888887543110 01246
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=8 Score=35.35 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+|| +.-|+|+.+.+++..+. .+.+|+.+|.+...++...+.+...+. ++.++.+|+.+...-. ..++.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 44466778888887653 345899999998887776666655443 4778889987643110 11246
Q ss_pred ccEEEECCCCCC
Q 019692 210 VRAILLDPSCSG 221 (337)
Q Consensus 210 fD~IlvDpPCSg 221 (337)
+|.|+..+.-++
T Consensus 84 id~vi~~Ag~~~ 95 (287)
T PRK06194 84 VHLLFNNAGVGA 95 (287)
T ss_pred CCEEEECCCCCC
Confidence 799998775443
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.2 Score=35.33 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=29.1
Q ss_pred eecCCch--hHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHH--HHHh
Q 019692 143 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT--IKLS 185 (337)
Q Consensus 143 Dl~aG~G--~kt~~la-~~~~~~g~V~avD~~~~~l~~l~~~--~~~~ 185 (337)
|+||..| ..+..+. +...+.++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 3455678999999999999999999 5544
|
; PDB: 2PY6_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.64 E-value=8.8 Score=36.68 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=69.4
Q ss_pred HHhCCCCC----CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 131 AALAPKPG----WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 131 ~~l~~~~g----~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+....| ...+|+|+|.|..+-.+.... + .|-+++.+..-+-.+..++. .| |+.+-+|...-.|
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P---- 235 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTP---- 235 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccCC----
Confidence 33444445 789999999999999988854 3 48899999888877777765 45 6667777543322
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+-|+|++= -|. -+ |+.++. .++|++..+-+++ |.|+-.-+
T Consensus 236 --~~daI~mk-WiL--------------hd--------wtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 --KGDAIWMK-WIL--------------HD--------WTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred --CcCeEEEE-eec--------------cc--------CChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 23566641 000 01 244443 5789999987776 88777666
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=85.49 E-value=6.5 Score=37.33 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+|| +..|+|..+.+++..+-. +.+|++++.+......+.......+. .++.++.+|..+...-......+|.|+.
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 34566 556889999998887643 34899888876655544333222232 2478888998765322111235788887
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-+.
T Consensus 84 ~A~ 86 (351)
T PLN02650 84 VAT 86 (351)
T ss_pred eCC
Confidence 664
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.95 Score=42.63 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=53.7
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC----CCCCCCccEEEE
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK----DPAYSEVRAILL 215 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~----~~~~~~fD~Ilv 215 (337)
-+|+|.|.--.-..+..... +-.-+|.|+++..+..+++|..+++... |.+++......... ......||+++|
T Consensus 106 GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 47887776544444444333 3678999999999999999999998754 66666543222111 111235999999
Q ss_pred CCCCCC
Q 019692 216 DPSCSG 221 (337)
Q Consensus 216 DpPCSg 221 (337)
+||..-
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 999653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=12 Score=35.48 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+..||=.| |+|+.+..++..+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 355677665 56667777776553 345899999999998888888877664 477888888764311 01235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++.++.
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 7899998764
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.4 Score=38.77 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=59.9
Q ss_pred CCeEEeecCCchhHHHHHHHHc----CC----CCEEEEEeCCHHHHHHHHHH--------------HHHh-----C----
Q 019692 138 GWKVLDACSAPGNKTVHLAALM----KG----KGKIVACELNKERVRRLKDT--------------IKLS-----G---- 186 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~----~~----~g~V~avD~~~~~l~~l~~~--------------~~~~-----g---- 186 (337)
.-+|+.+||++|-=+..||-++ .. ..+|+|.|+|+..++.|++- .+++ |
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999997433333322 11 24899999999999987652 1222 1
Q ss_pred C-----CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 019692 187 A-----ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL 261 (337)
Q Consensus 187 ~-----~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL 261 (337)
+ ++|++...|..+.++ ..+.||+|+| -.. + + |.+ .+.|.+++
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~C----RNV--l-----I------------YF~-------~~~~~~vl 158 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDP---PFGRFDLIFC----RNV--L-----I------------YFD-------PETQQRVL 158 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-----SS--G-----G------------GS--------HHHHHHHH
T ss_pred EChHHcCceEEEecccCCCCc---ccCCccEEEe----cCE--E-----E------------EeC-------HHHHHHHH
Confidence 1 258899999887222 2478999995 221 1 1 111 24578999
Q ss_pred HHHhCCCCC-cEEEE
Q 019692 262 RHALSFPGV-ERVVY 275 (337)
Q Consensus 262 ~~A~~~~~~-G~lvY 275 (337)
+.....+++ |.|+-
T Consensus 159 ~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHGGGEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEE
Confidence 999998887 66654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=85.10 E-value=3.1 Score=41.15 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH-----------HHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 146 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-----------KLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~-----------~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
-|.|+.++.+|..+.....|+++|+++.+++.+++.. ...| ++.+. .+... ....|+||
T Consensus 12 IGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~~~-------~~~advvi 81 (425)
T PRK15182 12 IGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEIEK-------IKECNFYI 81 (425)
T ss_pred ECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCHHH-------HcCCCEEE
Confidence 3777788887777655579999999999998877221 1111 11111 11111 23578888
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhc
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+-.|-.-.. ...+ ++..+-.- .+...+.+++|.+|-...|+.|...++++...++
T Consensus 82 i~Vptp~~~--~~~~-------------------dl~~v~~a----~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 82 ITVPTPINT--YKQP-------------------DLTPLIKA----SETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred EEcCCCCCC--CCCc-------------------chHHHHHH----HHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 866622100 0011 11111111 1222233456888888899999999999998886
Q ss_pred h
Q 019692 295 I 295 (337)
Q Consensus 295 ~ 295 (337)
.
T Consensus 137 ~ 137 (425)
T PRK15182 137 R 137 (425)
T ss_pred h
Confidence 4
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=84.60 E-value=7.4 Score=37.01 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=32.4
Q ss_pred CCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeC---CHHHHHHHHHHHHHhCCC
Q 019692 135 PKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACEL---NKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 135 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~---~~~~l~~l~~~~~~~g~~ 188 (337)
+++|++||=.|+|+ |..+.++|+.++ .+|++++. ++.+++.+ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46899999888754 334566666653 47999987 56666654 456764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.47 E-value=3.4 Score=39.99 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~ 180 (337)
-++..+.+-.+-+.|+|+|+|.|..+..|+-. .+-.|+|||-|....+++++
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHHH
Confidence 34444445555679999999999998888664 35789999999665554443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=1.3 Score=41.24 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
.+.+++++|..++....+ .++||+|++|||.-. |. ...+. ...+. ..+....-...+..+.++
T Consensus 7 ~~~~i~~gD~~~~l~~l~-~~siDlIitDPPY~~-~~--~~~~~----------~~~~~---~~~~~~~l~~~l~~~~rv 69 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-SESVDLIFADPPYNI-GK--NFDGL----------IEAWK---EDLFIDWLYEWIDECHRV 69 (284)
T ss_pred CCCEEEeccHHHHHHhcc-cCcccEEEECCCccc-cc--ccccc----------ccccc---HHHHHHHHHHHHHHHHHH
Confidence 345788899887543322 257999999999742 11 00000 00011 123334456888888898
Q ss_pred CCCcEEEEEcCCC
Q 019692 268 PGVERVVYSTCSI 280 (337)
Q Consensus 268 ~~~G~lvYsTCS~ 280 (337)
+++|..+|.-|+.
T Consensus 70 LK~~G~i~i~~~~ 82 (284)
T PRK11524 70 LKKQGTMYIMNST 82 (284)
T ss_pred hCCCcEEEEEcCc
Confidence 8885444544554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.07 E-value=12 Score=33.49 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||=.| |+|+.+..+++.+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367888666 57778888877653 345899999999888877777766553 477788888764311 11134
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
..|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999986643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=13 Score=35.07 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=34.0
Q ss_pred CCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...+|++||=.|||+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 455799999887643 22345556654 3347999999999887664 467653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.74 E-value=30 Score=31.16 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.++|-.|++ |+.+.+++..+ ..+.+|+.++.+++.++.+...++..|. ++.++..|..+.... ...++
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 35677766655 45666666544 3346899999999888888877776553 477888888764311 01135
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+..
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.93 E-value=16 Score=34.76 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.+..||=.|+ +|+.+..++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|..+..... ..++
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3567775554 5667777777543 346899999999999988888877764 4677778876533110 1125
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++.++-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 68999987643
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.91 E-value=23 Score=33.41 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=35.6
Q ss_pred hCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||=.|+|+-+ .+.++|+.++ .+|++++.++++++.+ +++|.+.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 567889999988875433 3455666642 4799999998886554 4578754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=8.9 Score=34.32 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|=.|+ +|+.+.+++..+. .+.+|+.++.+.+.++.+.+.++..+ .++.++..|..+.... ...++
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3677887775 4566777776653 34589999999988888877777655 3577888888764311 01135
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.++..+.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899998764
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=82.61 E-value=16 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=36.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
..-+||--|||.|..+..+|.+ +..+.|+|.|--|+-...-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999997 4689999999999765554443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=22 Score=31.84 Aligned_cols=80 Identities=8% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|..+|-.|+ +|+.+..++..+. .+.+|+.++.+.+.++.+...+.... -.++.++..|+.+.... ...++
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 667777765 5566677666543 34689999999888887777776541 13477888888764210 11235
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|.|+..+.
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 7899987654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=82.29 E-value=2.7 Score=38.86 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=42.7
Q ss_pred CeEEeecCCchh--HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 139 WKVLDACSAPGN--KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 139 ~~VLDl~aG~G~--kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
...||+|||--. .+-.+|+...+..+|+-+|+++-.+..++..+....-....++.+|.++..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 579999999653 577888888899999999999999999998887653223889999988753
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.18 E-value=1.4 Score=40.94 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=44.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|..++|.|||.|--+. ..+...++++|++...+..+++. |. ..+..+|+.+++... ..||.++.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~p~~~---~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKLPFRE---ESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----CC--ceeehhhhhcCCCCC---Cccccchh
Confidence 48899999999994321 12445799999988777654422 22 257778998888664 56787763
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=82.03 E-value=4.9 Score=38.88 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=39.0
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~ 181 (337)
...+.+|++||..|+|+ |..+.++|+..+ ...|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 45567899999999887 777888888763 34699999999988877764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=5.9 Score=35.80 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHc-CC-CCEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALM-KG-KGKIVACELNKER-VRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPA 206 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~-~~-~g~V~avD~~~~~-l~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~ 206 (337)
..+.+||-.|+ +|+.+..++..+ .. ..+|+.++.+++. ++.+.+.++..+..++.++..|..+.... ...
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34667886765 677888888764 32 2589999998775 77777777766655688999998764321 001
Q ss_pred CCCccEEEEC
Q 019692 207 YSEVRAILLD 216 (337)
Q Consensus 207 ~~~fD~IlvD 216 (337)
.+..|.++..
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2468988874
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.69 E-value=36 Score=30.32 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=51.6
Q ss_pred CeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 019692 139 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 210 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 210 (337)
.++|-.|+ +|+.+.+++..+. .+.+|+.++.+...++.+.+.++..+ .++.++..|..+.... ...++..
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46675555 5556777766543 34589999999888887777766554 3578888887653211 0113468
Q ss_pred cEEEECCCC
Q 019692 211 RAILLDPSC 219 (337)
Q Consensus 211 D~IlvDpPC 219 (337)
|.|+..+..
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999987653
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=6.6 Score=40.99 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred eEEeecCCchhH---HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-hCC--------CcEEEEeccCCCCCCCC---
Q 019692 140 KVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKL-SGA--------ANIEVLHGDFLNLDPKD--- 204 (337)
Q Consensus 140 ~VLDl~aG~G~k---t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~-~g~--------~~v~~~~~D~~~~~~~~--- 204 (337)
.|+=+|||-|-. ++..++..+-+-+|+|||.|+..+.....+... ..- ..|+++..|.+.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 588999999986 444455555556899999996644333333211 112 23999999999885321
Q ss_pred -----CCCCCccEEEEC
Q 019692 205 -----PAYSEVRAILLD 216 (337)
Q Consensus 205 -----~~~~~fD~IlvD 216 (337)
..++++|+|+..
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 112468888743
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.46 E-value=17 Score=32.04 Aligned_cols=80 Identities=8% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.+...+..+...+...+ .++.++..|..+...- ...+..
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 56777877776543 34589999999887777666666544 3488888888764210 011246
Q ss_pred ccEEEECCCC
Q 019692 210 VRAILLDPSC 219 (337)
Q Consensus 210 fD~IlvDpPC 219 (337)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999987753
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.44 E-value=2.6 Score=42.43 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=54.0
Q ss_pred eEEeecCCchhH---HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 140 KVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 140 ~VLDl~aG~G~k---t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|+=+|+|.|-. ++..|.....+-+++|+|.++.++..++. .+....+ .|+++..|.+.+.+. ..+.|.++.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~VS 445 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIVS 445 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchHH
Confidence 578889999875 55566666667799999999999998876 3333333 499999999988743 245677764
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
.
T Consensus 446 E 446 (649)
T KOG0822|consen 446 E 446 (649)
T ss_pred H
Confidence 3
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=1.4 Score=39.79 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=43.6
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
++++++|..+.....+ .+++|+|+.|||.- .|.-.+. + ... .. ....+.....+..+.+.++
T Consensus 2 ~~l~~gD~le~l~~lp-d~SVDLIiTDPPY~-i~~~~~~-~---------~~~---~~---~~~~ew~~~~l~E~~RVLK 63 (227)
T PRK13699 2 SRFILGNCIDVMARFP-DNAVDFILTDPPYL-VGFRDRQ-G---------RTI---AG---DKTDEWLQPACNEMYRVLK 63 (227)
T ss_pred CeEEechHHHHHHhCC-ccccceEEeCCCcc-cccccCC-C---------ccc---cc---ccHHHHHHHHHHHHHHHcC
Confidence 3577888876543332 36899999999984 2211100 0 000 00 1122344677888888888
Q ss_pred CcEEEEEcCCCC
Q 019692 270 VERVVYSTCSIH 281 (337)
Q Consensus 270 ~G~lvYsTCS~~ 281 (337)
+|..+|+-|+.+
T Consensus 64 pgg~l~if~~~~ 75 (227)
T PRK13699 64 KDALMVSFYGWN 75 (227)
T ss_pred CCCEEEEEeccc
Confidence 877777777765
|
|
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=80.82 E-value=2.3 Score=33.19 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=36.7
Q ss_pred EEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 141 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 141 VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|| ++||.|..|..+++. +++.++..|++ +++......++... ...+|+|++-|.
T Consensus 3 Il-l~C~~GaSSs~la~k-------------------m~~~a~~~gi~-~~i~a~~~~e~~~~---~~~~Dvill~PQ 56 (99)
T cd05565 3 VL-VLCAGGGTSGLLANA-------------------LNKGAKERGVP-LEAAAGAYGSHYDM---IPDYDLVILAPQ 56 (99)
T ss_pred EE-EECCCCCCHHHHHHH-------------------HHHHHHHCCCc-EEEEEeeHHHHHHh---ccCCCEEEEcCh
Confidence 45 667888777766654 45666777875 77777666655433 356899998776
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.1 Score=39.25 Aligned_cols=42 Identities=17% Similarity=0.018 Sum_probs=31.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~ 182 (337)
.-+||--|||.|..+.-+|.. .-.+-+.|.|--|+-.-.-.+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFIL 192 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHH
Confidence 458999999999999999987 246777788887775443333
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=17 Score=32.92 Aligned_cols=82 Identities=9% Similarity=0.004 Sum_probs=49.4
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|-.|+++ ++.+..++..+. ...+|+.++.+.+..+.+++..+...-.++.++..|+.+.... ...+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 367889889874 788888887653 3357887765432222333333332223577888888764311 1124
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+++|.++..+.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67899988663
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=16 Score=34.02 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||=.| |+|+.+.+++..+. .+.+|+.++.++..++.+.+.+. ++.++..|+.+.... ...++
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777666 56778888887653 33589999999887766554442 367788888765311 01135
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999998753
|
|
| >KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription] | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.7 Score=39.47 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=48.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
-+||++.+|-|+.-..+-..--+..-|-|+|++.-+-+.-..|- +-+-+ -..|...+...+-..-.+|.+++-||
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~---h~~L~--k~~~I~~lt~kefd~l~~~m~lMSPp 78 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY---HSNLV--KTRNIQSLTVKEFDKLQANMLLMSPP 78 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc---ccchh--hccccceeeHhhhhhcccceEeeCCC
Confidence 37899999999865544433224456889999987766655551 10001 11111111111000135889999999
Q ss_pred CCCccccCcccC
Q 019692 219 CSGSGTAAERLD 230 (337)
Q Consensus 219 CSg~G~~~~~~d 230 (337)
|--.-.+.+..|
T Consensus 79 CQPfTRiG~q~D 90 (338)
T KOG0919|consen 79 CQPFTRIGLQRD 90 (338)
T ss_pred CCchhhhccccc
Confidence 975544433333
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=38 Score=30.06 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=51.4
Q ss_pred CeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCCCccEEEEC
Q 019692 139 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYSEVRAILLD 216 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~~fD~IlvD 216 (337)
.+||=.| |+|+.+..+++.+. .+.+|++++.++.....+.+..+..+. ++.++..|..+...... .....|.|+.+
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 3566555 46777887776653 346899999988877777776666554 47888888766431110 01368999986
Q ss_pred CC
Q 019692 217 PS 218 (337)
Q Consensus 217 pP 218 (337)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 337 | ||||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 9e-45 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 1e-23 | ||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 4e-19 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 7e-17 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 2e-16 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 2e-16 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 3e-15 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 4e-14 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 3e-13 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 1e-08 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 1e-04 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 2e-04 |
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 7e-90
Identities = 107/253 (42%), Positives = 143/253 (56%), Gaps = 27/253 (10%)
Query: 60 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 100
P PR+VRVNTLK D V +Q D L+P+LL
Sbjct: 6 PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65
Query: 101 ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK 160
+ P DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K
Sbjct: 66 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK 125
Query: 161 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 220
+GKI A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCS
Sbjct: 126 NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185
Query: 221 GSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSI 280
GSG + +L+ A RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+
Sbjct: 186 GSGMPSRQLEEP--------GAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSL 237
Query: 281 HQVENEDVIKSVL 293
Q ENEDV++ L
Sbjct: 238 CQEENEDVVRDAL 250
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-55
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
Query: 61 DVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCV 119
K +++RVNTLK++ + L + V++K L + + P + G
Sbjct: 6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYY 65
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
Q +S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK
Sbjct: 66 MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR-AILLDPSCSGSGTAAERLDHLLPSHAS 238
I G N +++ D ILLD CSG+ +
Sbjct: 126 SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK----------- 174
Query: 239 GHTADPT-EMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
+ E + S QK+ + + +VYSTCS+ ENE+VIK +L
Sbjct: 175 ----NRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYSTCSMEVEENEEVIKYIL 227
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-54
Identities = 72/247 (29%), Positives = 112/247 (45%), Gaps = 18/247 (7%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPD-LLILPPGCDL 108
E + + + + P PR RVNTLK+ V V L K+ F ++ + + +
Sbjct: 30 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89
Query: 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 168
P + G +++Q +S AL PKPG V D +APG KT +LA LM+ G I A
Sbjct: 90 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 149
Query: 169 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
++++ R+R + + G N+ + H L++ + ILLD C+GSGT +
Sbjct: 150 DVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GELNVE--FDKILLDAPCTGSGTIHKN 206
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 286
+ M+ + Q + L L PG +VYSTCS+ ENE
Sbjct: 207 PE----------RKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG-ILVYSTCSLEPEENE 255
Query: 287 DVIKSVL 293
VI+ L
Sbjct: 256 FVIQWAL 262
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 6e-52
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 63 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 121
+ +RVNTLK +V+ + EL + V + + VP +L + + G + +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
Q +AS++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 182 IKLSGAANIEVLHGDFLNLDPKDPAYSEVRA--ILLDPSCSGSGTAAERLD---HLLPSH 236
+K G ++ L D E A +LLD C+ SGT + + L
Sbjct: 304 VKRMGIKIVKPLVKDARKAPEI---IGEEVADKVLLDAPCTSSGTIGKNPELRWRLRE-- 358
Query: 237 ASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
+++N++S Q++ L A PG R++Y+TCSI + ENE I+ L
Sbjct: 359 -----------DKINEMSQLQRELLESAARLVKPG-GRLLYTTCSIFKEENEKNIRWFL 405
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 4e-50
Identities = 71/279 (25%), Positives = 109/279 (39%), Gaps = 32/279 (11%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD-LLILPPGCDLH 109
+ AL Q + R N LK V +Q + L G
Sbjct: 26 DFFSALEQGS---VKKGFRWNPLKPAGLDMVQTY-HSEELQPAPYSNEGFLGTVNG---- 77
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
L G + Q ++ +V A A KPG KVLD C+APG K+ LAA MKGKG +V E
Sbjct: 78 KSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNE 137
Query: 170 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
+ +R + L + I+ G +N V + L P + + I++D CSG G R
Sbjct: 138 IFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD--RIVVDAPCSGEGMF--RK 193
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENED 287
D P+ T E Q++ L A+ +++YSTC+ ENE+
Sbjct: 194 D---PNAIKEWT-----EESPLYCQKRQQEILSSAIKMLKNK-GQLIYSTCTFAPEENEE 244
Query: 288 VIKSVL--------PIAMSFGFQLATPFPNGTAEASQFL 318
+I ++ I ++ A + +
Sbjct: 245 IISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTI 283
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 1e-48
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 22/259 (8%)
Query: 44 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLIL 102
R + S P R +RVNTLK+ V + + + + +
Sbjct: 17 REAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWI 76
Query: 103 PPGCDLHV----HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLA 156
+ + ++G ++Q +S + AAL +V+D +APG+KT ++
Sbjct: 77 ERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIS 136
Query: 157 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216
A M +G I+A E + RV+ L I G +N+ + H D P + AILLD
Sbjct: 137 ARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD--AILLD 194
Query: 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVV 274
CSG G R D P + E +++A Q++ + A PG +V
Sbjct: 195 APCSGEGVV--RKD---PDALKNWS-----PESNQEIAATQRELIDSAFHALRPGG-TLV 243
Query: 275 YSTCSIHQVENEDVIKSVL 293
YSTC+++Q ENE V +
Sbjct: 244 YSTCTLNQEENEAVCLWLK 262
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-46
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 18/235 (7%)
Query: 61 DVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 120
+ + +RVNTLK+ ++ + ++ + P HP G +
Sbjct: 27 EGKRTYGLRVNTLKLPPEAFQRISP--WPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
+Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E++ +RVR L +
Sbjct: 85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 240
++ GA V L Y +LLD CSG G + +
Sbjct: 145 NVERWGAPLA-VTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMFRKDRE---------- 191
Query: 241 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 293
A +++ QK L A PG +VYSTC+ ENE V+ L
Sbjct: 192 AARHWGPSAPKRMAEVQKALLAQASRLLGPG-GVLVYSTCTFAPEENEGVVAHFL 245
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-43
Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 53 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVH 111
+ A Q P P ++R+N DS + L + PD + L +H
Sbjct: 165 VEANNQRP----PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHAL 220
Query: 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 171
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA +++
Sbjct: 221 PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDID 279
Query: 172 KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 231
++R+ R+ D +K G V GD ILLD CS +G D
Sbjct: 280 EQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQQ-FDRILLDAPCSATGVIRRHPD- 336
Query: 232 LLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVI 289
++ L +L Q + L G +VY+TCS+ EN I
Sbjct: 337 ------IKWLRRDRDIPELAQL---QSEILDAIWPHLKTG-GTLVYATCSVLPEENSLQI 386
Query: 290 KSVL 293
K+ L
Sbjct: 387 KAFL 390
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
V K G VLD + G +L+ ++ KGK+ A ++ +E V + + G
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 189 NIEVLHGDFLNL 200
N+EVL + +
Sbjct: 89 NVEVLKSEENKI 100
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 5e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
++ + + +S + +PG +L+ GN + ++
Sbjct: 73 FIVSDFSPMYFGRVI-RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYA 131
Query: 159 MKGKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKDPA 206
+ GKG + E +++ +++ D + N+ D +
Sbjct: 132 LNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 180
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-08
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
++ PG KVL+A G +TV LA +I + +++ E + + ++ + +G
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNG 85
Query: 187 AANIEVLHGDFLNLD 201
N++ L + +L
Sbjct: 86 IKNVKFLQANIFSLP 100
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-08
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ALAPKP + D G+ + + V E+++ER R+ G ++
Sbjct: 19 SALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDR 77
Query: 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 234
+ P I + + G A L
Sbjct: 78 IAVQQGAPRAFDDVPD--NPDVIFIGGGLTAPGVFAAAWKRLPV 119
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
+ IL P ++ + G + K ++++ A PG +++A G T+ LA
Sbjct: 55 EFKILRPRIVDYLDKM-KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLAN 113
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
++ +G++V+ E+ ++ + + IK +G + + + ++ V L P
Sbjct: 114 IVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQP 173
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+G + + A K +VLD + G+ A + K+VA +L ++ ++ +
Sbjct: 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAF 78
Query: 182 IKLSGAANIEVLHGDFLNL 200
I+ +G +E + GD +
Sbjct: 79 IEGNGHQQVEYVQGDAEQM 97
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+ ++ + +VLD + G+ + + + + + + KE V
Sbjct: 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 62
Query: 182 IKLSGAANIEVLHGDFLNL 200
+ G N+ G +L
Sbjct: 63 AQEKGVENVRFQQGTAESL 81
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-06
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
L+L P +V + G + K ++ + PG +VL+A + G T+ L
Sbjct: 62 FLVLRPLLVDYVM-SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120
Query: 159 MKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILL 215
+ G++++ E + + + N ++ D + + D + +L
Sbjct: 121 VGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDML 180
Query: 216 DP 217
P
Sbjct: 181 AP 182
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184
S +V ++D G + L L+ K + + + ++ +L
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 185 SGAANIEVLHGDFLNLDPKD 204
+ E L GD ++ D
Sbjct: 70 LP-YDSEFLEGDATEIELND 88
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 3e-06
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
+ AA + G + + P T L + + G ++ E+ + + I+
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIE 167
Query: 184 LSGAANIEVLHGDFLNLDPKD 204
G + V+ GD +D +
Sbjct: 168 GLGVDGVNVITGDETVIDGLE 188
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLH 194
K G V+DA GN T LA+L+ G++ ++ + + + + ++
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL 233
N+D + L SG + + R + +
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
L K G ++L A G H++ ++ +G+I E +R L ++ NI
Sbjct: 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFP 130
Query: 193 LHGDFLNLDPKDPAYSEVRAILLDPSCSG 221
+ GD + V + D +
Sbjct: 131 ILGDARFPEKYRHLVEGVDGLYADVAQPE 159
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
+ L + + D + + ++ + LM G+I A E N + + ++D +K A N+
Sbjct: 34 SKLRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNV 92
Query: 191 EVLHGDF 197
++
Sbjct: 93 TLVEAFA 99
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 17/175 (9%)
Query: 125 ASSMVAA---ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD- 180
+S V + + + G KV+D G + ALM + + E N E +
Sbjct: 78 SSGAVTSSYKSRFIREGTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHN 134
Query: 181 -TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC-SGSGTAAERLDHLLPSHAS 238
+ L+ ++ +L GDF P + I +DP+ SG+ + P
Sbjct: 135 IPLLLNEGKDVNILTGDFKEYLPLIKTFH-PDYIYVDPARRSGADKRVYAIADCEPD--- 190
Query: 239 GHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293
L + L + + + +H V +K +L
Sbjct: 191 ----LIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELL 241
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 120 FL--QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 177
L G ++ AA K VL+ GN TV L L K K++ +++ +
Sbjct: 24 LLKNPGILDKIIYAA-KIKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISE 79
Query: 178 LKDTIKLSGAANIEVLHGDFLNLD 201
+K G N+EV GD +
Sbjct: 80 VKKRCLYEGYNNLEVYEGDAIKTV 103
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 123 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
++ A + + D G +T+ LA G++ + +
Sbjct: 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAG--HVTGQVTGLDFLSGFIDIFNR 87
Query: 181 TIKLSGAAN-IEVLHGDFLNLD 201
+ SG N + + G +L
Sbjct: 88 NARQSGLQNRVTGIVGSMDDLP 109
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-05
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 100 LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 159
IL P + + + K SS +A L K G +++D G LA +
Sbjct: 76 YILIPSLIDEIMN-MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134
Query: 160 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
GK+ A E +E + + + G + ++ + + + DP
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 192
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-05
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE---------RVRRLK 179
+A A KPG K+L+ G+ + LA + G + ++ +
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94
Query: 180 DTIKLSGAANIEVLHGDFLNLDP 202
L + +L P
Sbjct: 95 LAGPLGDRLTVHFNTNLSDDLGP 117
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-05
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 127 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG-SGTAAERLDHLLPSHAS 238
++ NI + GD + +V I D + + + + L
Sbjct: 116 PIVE--ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGY 173
Query: 239 G 239
G
Sbjct: 174 G 174
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
V+ A +LD + G + L +++++ + K+ + G
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKN--RFRGN 91
Query: 188 ANIEVLHGDFLNLDPKDP 205
++ + D+ D ++
Sbjct: 92 LKVKYIEADYSKYDFEEK 109
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
+L + P + ++ + K +S + L PG +VL+A + G T+ LA
Sbjct: 58 ELSVHRPTLEEYLLH-MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLAR 116
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH-GDFLNLDPKDPAYSEVRAILLD 216
+ KG + + E + + + ++ H G + ++ AY V L++
Sbjct: 117 AVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLME 176
Query: 217 P 217
P
Sbjct: 177 P 177
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189
+ P K++D CS GN + L + K KIV E+ + K ++ + +
Sbjct: 42 KFSYLPIRKGKIIDLCS--GNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED 99
Query: 190 -IEVLHGDFLNLDPKDPAYS 208
IE++ D + P
Sbjct: 100 QIEIIEYDLKKITDLIPKER 119
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 56/356 (15%), Positives = 98/356 (27%), Gaps = 124/356 (34%)
Query: 20 VGDAEK----FLM--LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV-RVNT 72
V + + FLM + Q ++ IE LY V V R+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRL-- 134
Query: 73 LKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 132
L+L + LL L P ++ + ++ G GK + +
Sbjct: 135 ------QPYLKLRQA-----------LLELRPAKNVLIDGVL--GS----GK-TWVALDV 170
Query: 133 LAPK------PG---WKVLDACSAPGNKTVHLAALM------------KGKGKIVACELN 171
W L C++P L L+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 172 KERVRRL------------------KDTIK--------LSGAANIEVLHGDFLN------ 199
+ +RRL L +V DFL+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTH 288
Query: 200 --LDPKDPAYS--EVRAILLD---------PS--CSGS----GTAAERL-DHLLPSHASG 239
LD + EV+++LL P + + AE + D L
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------- 341
Query: 240 HTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPI 295
T D + +KL+ + +L L P R ++ S+ + + +L +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV-LE-PAEYRKMFDRLSVFP-PSAHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 28/153 (18%)
Query: 164 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY----SEVRAILLDPSC 219
I+ + RL T+ ++ + L ++ Y S ++ PS
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSM 107
Query: 220 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY--ST 277
+R D L + + RL ++AL V ++
Sbjct: 108 MTRMYIEQR-DRL---YNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNV--LIDGVLG 160
Query: 278 CSIHQVENEDVIKSVLPIAMSFGFQLATPFPNG 310
K+ + + + +++
Sbjct: 161 SG----------KTWVALDVCLSYKVQCKMDFK 183
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ G +D S PG ++ LA + I A + +K I +
Sbjct: 35 NIINRFGITAG-TCIDIGSGPGALSIALAK--QSDFSIRALDFSKHMNEIALKNIADANL 91
Query: 188 AN-IEVLHGDFLNL 200
+ I+++ GD N+
Sbjct: 92 NDRIQIVQGDVHNI 105
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186
V+ K+ D G +T+ LA + KG+I +L + + + +
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 93
Query: 187 -AANIEVLHGDFLNLDPKD 204
A ++ + G NL ++
Sbjct: 94 CADRVKGITGSMDNLPFQN 112
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195
V+DA GN T LA L K+ A ++ ++ + + + G N E++
Sbjct: 21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD 77
Query: 196 DFLNLDP 202
NLD
Sbjct: 78 GHENLDH 84
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 99 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 158
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 68 YMLRRPALEDYVVL-MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA 126
Query: 159 MKGKGKIVACELNKERVRRLKDTIK 183
+ +G++++ E+ K+ K K
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYK 151
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181
+A+ + + + KVLD S G +++ K ++ V +
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINE--KYGAHTHGIDICSNIVNMANER 97
Query: 182 IKLSGAANIEVLHGDFLNLDPKD 204
+ + I D L + +
Sbjct: 98 VSGNN--KIIFEANDILTKEFPE 118
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-04
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 191
+ K K+L ++ G H+A + KG + A E +R L D NI
Sbjct: 69 VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA--ERENII 125
Query: 192 VLHGDFLNLDPKDPAYSEVRAILLD 216
+ GD +V I D
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYED 150
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRL 178
+ + S V A+ K LD G +++LAA G + A + N + +
Sbjct: 15 YELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV 70
Query: 179 KDTIKLSGAANIEVLHGDFLNLDPKDP 205
+ + N+ D NL
Sbjct: 71 ERIKSIENLDNLHTRVVDLNNLTFDRQ 97
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR--------LKDTI 182
A G VLD G + L+ GK++ ++ ++ +
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 183 KLSGAANIEVLHGDFLNLDPKD 204
+N+ L G NL +
Sbjct: 137 GSPSRSNVRFLKGFIENLATAE 158
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
G+ ++A P+ V+ G + A + ++V + +++ V +
Sbjct: 43 QTGRLLYLLARIKQPQ---LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
Query: 181 TIKLSGAAN-IEVLHGDFLNLDPKDPAY 207
+ +G + +E+ GD L +
Sbjct: 100 MLHDNGLIDRVELQVGDPLGIAAGQRDI 127
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSG 186
+ AALAP+ G + D G+ +V G+ + E +R+ ++ I
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102
Query: 187 AANIEVLHGDF 197
+ + + G
Sbjct: 103 SPRMRAVQGTA 113
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA 188
A +PG V ++ + L ++V + + E + A
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
Query: 189 NIEVLHGDFLNLDPKDPA 206
I + D LD ++
Sbjct: 171 QITLHRQDAWKLDTREGY 188
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAA 188
A+ +A ++ D + G +A + + ++ E ++E + +++L A
Sbjct: 29 ASLVADDRACRIADLGA--GAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA 86
Query: 189 N----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLL---PSHASGHT 241
IEVL D +G E H++ P + +G
Sbjct: 87 AFSARIEVLEADVTLRAKARVE---------------AGLPDEHFHHVIMNPPYNDAGDR 131
Query: 242 ADPTEMERL 250
P ++
Sbjct: 132 RTPDALKAE 140
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
+ A L + G +VLD G V LA ++ +++ +V + +G A
Sbjct: 53 MIALLDVRSGDRVLDVGCGIGKPAVRLAT--ARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 189 N-IEVLHGDFLNLDPKD 204
N + + D ++L +D
Sbjct: 111 NRVTFSYADAMDLPFED 127
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 9e-04
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190
L V+D G + + + + A + + K + N
Sbjct: 29 GKLNLNKDDVVVDVGCGSG--GMTVEIAKRC-KFVYAIDYLDGAIEVTKQNLAKFNIKNC 85
Query: 191 EVLHGD----FLNLDP 202
+++ G L+
Sbjct: 86 QIIKGRAEDVLDKLEF 101
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.76 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.74 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.71 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.66 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.66 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.65 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.61 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.61 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.6 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.58 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.57 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.55 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.55 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.54 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.54 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.53 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.53 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.52 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.52 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.52 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.5 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.49 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.47 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.46 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.45 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.45 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.45 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.44 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.44 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.44 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.43 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.43 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.42 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.42 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.41 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.4 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.38 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.38 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.38 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.38 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.37 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.37 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.37 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.36 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.35 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.35 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.34 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.34 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.34 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.34 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.34 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.33 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.33 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.33 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.32 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.32 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.32 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.32 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.31 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.31 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.31 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.31 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.3 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.3 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.3 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.3 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.29 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.29 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.29 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.28 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.27 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.27 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.27 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.27 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.26 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.26 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.25 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.25 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.25 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.25 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.25 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.24 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.24 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.23 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.23 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.22 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.22 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.21 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.21 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.21 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.2 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.19 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.19 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.18 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.18 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.17 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.17 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.17 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.17 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.17 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.15 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.14 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.14 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.14 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.14 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.13 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.13 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.12 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.12 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.11 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.11 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.1 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.1 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.09 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.09 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.09 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.09 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.09 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.09 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.08 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.08 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.07 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.07 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.07 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.07 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.06 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.05 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.05 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.05 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.05 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.05 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.04 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.03 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.03 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.03 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.02 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.02 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.02 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.02 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.02 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.02 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.02 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.02 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.02 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.01 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.01 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.01 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.99 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.99 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.99 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.98 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.98 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.98 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.97 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.95 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.94 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.94 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.94 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.94 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.93 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.93 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.93 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.92 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.92 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.92 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.92 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.92 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.91 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.91 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.91 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.89 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.89 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.89 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.89 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.88 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.88 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.87 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.87 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.86 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.86 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.86 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.85 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.84 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.83 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.83 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.82 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.82 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.81 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.81 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.81 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.81 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.81 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.8 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.8 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.77 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.77 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.77 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.76 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.76 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.75 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.74 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.73 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.73 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.72 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.71 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.7 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.7 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.68 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.68 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.67 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.67 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.65 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.65 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.65 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.62 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.61 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.61 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.6 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.59 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.58 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.58 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.57 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.55 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.54 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.51 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.5 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.47 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.45 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.44 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.44 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.44 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.43 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.4 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.4 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.39 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.35 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.34 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.34 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.29 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.22 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.19 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.08 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.08 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.06 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.05 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.98 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.97 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.93 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.91 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.86 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.84 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.81 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.8 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.74 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.74 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.64 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.63 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.58 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.55 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.51 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.37 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.37 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.34 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.33 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.3 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.3 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.29 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.25 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.23 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.1 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.64 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.49 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 95.92 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.7 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 95.62 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.45 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.4 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.33 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 94.87 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.63 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.73 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.33 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.74 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.27 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.72 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 90.62 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 90.33 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 90.21 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 90.2 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 89.73 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.72 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 89.62 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.56 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 89.09 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 88.9 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.74 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 88.37 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.2 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 88.15 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 87.98 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 87.4 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 87.37 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.36 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 87.09 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.07 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 87.06 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 87.03 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 86.98 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.76 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 86.75 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 86.58 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 86.12 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 86.08 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.98 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 85.76 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 85.72 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 85.63 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 85.36 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 85.25 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 84.69 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 84.55 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 84.49 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.4 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 84.29 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 84.24 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 84.2 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 84.18 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.14 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 84.1 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 84.06 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 84.03 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 83.93 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 83.78 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 83.76 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 83.72 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 83.5 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 83.48 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 83.47 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 83.18 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.13 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 83.04 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 82.82 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.49 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 82.12 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 81.91 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 81.72 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 81.63 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 81.61 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 81.13 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 81.11 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 81.1 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 80.93 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 80.85 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 80.79 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 80.65 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 80.58 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 80.58 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 80.48 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 80.45 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 80.35 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 80.2 |
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-54 Score=404.49 Aligned_cols=266 Identities=42% Similarity=0.672 Sum_probs=218.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHcc-CCceeec------------------CCCCCeEEeCCCCCCCCchhhhcCeEEEe
Q 019692 62 VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKD------------------DLVPDLLILPPGCDLHVHPLIVNGCVFLQ 122 (337)
Q Consensus 62 ~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~G~~~~Q 122 (337)
.++|+|+|||++|++.+++++.|++ ++.+++. +++|+++.+++...+..++.|++|.+++|
T Consensus 8 ~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~Q 87 (309)
T 2b9e_A 8 SQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 87 (309)
T ss_dssp -CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEEC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEEE
Confidence 4789999999999999999999875 6766554 55688888876668899999999999999
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
|.+|++++.++++++|++|||+|||+|++|+++|+.+++.++|+|+|+++.+++.+++|++++|+.||+++++|+.++..
T Consensus 88 d~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~ 167 (309)
T 2b9e_A 88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP 167 (309)
T ss_dssp CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred CHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999988765
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCc
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQ 282 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~ 282 (337)
....+.+||+|++||||||+|+++++||..|.. .++++++..++.+|++||++|++++++|.|||||||+++
T Consensus 168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~--------~~~~~~~~~l~~~Q~~iL~~a~~~l~gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAG--------TPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQ 239 (309)
T ss_dssp TCGGGTTEEEEEECCCCCC--------------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEESCCCG
T ss_pred cccccCCCCEEEEcCCcCCCCCCccCCChhhhc--------cCCHHHHHHHHHHHHHHHHHHHhccCCCEEEEECCCCCh
Confidence 432235799999999999999999999875532 135678899999999999999998888999999999999
Q ss_pred ccCHHHHHHHhchhcCCC-cEEecCCCCCCcchhhcc--cceeeeeecCCCCCCCCCC
Q 019692 283 VENEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQFL--KALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 283 ~ENe~vv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~f~p~~~~~~~~~~ 337 (337)
+|||++|++||+ ++++ |++++..+.|..++.... ..-++|++||.+.|.|+|+
T Consensus 240 ~Ene~~v~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 295 (309)
T 2b9e_A 240 EENEDVVRDALQ--QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFV 295 (309)
T ss_dssp GGTHHHHHHHHT--TSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEE
T ss_pred HHhHHHHHHHHH--hCCCcEEEeccccccccccccccCCCCCeEEECCCCCCCCCeEE
Confidence 999999999995 4677 999887778876553321 1234799999999999995
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=407.55 Aligned_cols=282 Identities=27% Similarity=0.353 Sum_probs=243.1
Q ss_pred cHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCC-CCeEEEEcCCCCCHHHHHHHHccCCceeecCCCCCeEEeCCCCCC
Q 019692 30 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVP-KPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 108 (337)
Q Consensus 30 ~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~-~p~~~RvN~lk~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
+|.|+ +.+|...+| +++++|++++++ + +|+++|||++|++.+++.+.| ++.+++.+|+|+++++.....+
T Consensus 2 lP~w~---~~~~~~~~g-~e~~~~l~a~~~---~~~~~~lRvN~lk~~~~~~~~~l--~~~~~~~~~~~~g~~l~~~~~~ 72 (464)
T 3m6w_A 2 LPKAF---LSRMAELLG-EEFPAFLKALTE---GKRTYGLRVNTLKLPPEAFQRIS--PWPLRPIPWCQEGFYYPEEARP 72 (464)
T ss_dssp CCHHH---HHHHHHHHG-GGHHHHHHHHHT---SCCCCEEEECTTTCCHHHHHHHC--SSCCEEETTEEEEEECCTTCCC
T ss_pred CcHHH---HHHHHHHHH-HHHHHHHHHcCC---CCCCeEEEEcCCCCCHHHHHHHc--CCCceecCCCCceEEECCCCCc
Confidence 45666 456666677 469999999984 5 799999999999999998887 5778899999999999866668
Q ss_pred CCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..++.|.+|.+++||.+|++++.++++++|++|||+|||||++|+++|+.+++.+.|+|+|+++.+++.+++|++++|+.
T Consensus 73 ~~~~~~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~ 152 (464)
T 3m6w_A 73 GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP 152 (464)
T ss_dssp SSSHHHHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred ccChHHhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe
Confidence 89999999999999999999999999999999999999999999999999987799999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
|.++++|+..+.... .+.||+|++||||||+|+++++|+..+. ++++++..++.+|.++|++|.+++
T Consensus 153 -v~~~~~Da~~l~~~~--~~~FD~Il~D~PcSg~G~~rr~pd~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~L 219 (464)
T 3m6w_A 153 -LAVTQAPPRALAEAF--GTYFHRVLLDAPCSGEGMFRKDREAARH----------WGPSAPKRMAEVQKALLAQASRLL 219 (464)
T ss_dssp -CEEECSCHHHHHHHH--CSCEEEEEEECCCCCGGGTTTCTTSGGG----------CCTTHHHHHHHHHHHHHHHHHTTE
T ss_pred -EEEEECCHHHhhhhc--cccCCEEEECCCcCCccccccChHHhhh----------cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988765211 1579999999999999999999987542 367899999999999999999999
Q ss_pred CC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCC---------CCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 269 GV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF---------PNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
++ |.|||||||++++|||++|++||+ ++++|++++.- +.|......... .+|++||.+.++|+|+
T Consensus 220 kpGG~LvysTCs~~~eEne~vv~~~l~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~P~~~~~dGfF~ 294 (464)
T 3m6w_A 220 GPGGVLVYSTCTFAPEENEGVVAHFLK--AHPEFRLEDARLHPLFAPGVPEWGEGNPELLK--TARLWPHRLEGEGHFL 294 (464)
T ss_dssp EEEEEEEEEESCCCGGGTHHHHHHHHH--HCTTEEEECCCCSTTSEECCGGGTTTCGGGGG--SEEECTTTSSSSCEEE
T ss_pred CCCcEEEEEeccCchhcCHHHHHHHHH--HCCCcEEEecccccccccCcccccccccccCC--eEEECCCCCCceeEEE
Confidence 87 899999999999999999999995 46789887532 123322222222 3799999999999996
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=380.20 Aligned_cols=286 Identities=27% Similarity=0.357 Sum_probs=239.6
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
...+|.|+.+ +|...+| +.+++++++++ .++|+++|||++|++.+++.+.|++ ++.+++.+++|+++.+...
T Consensus 13 ~~~~P~w~~~---~~~~~~g-~~~~~~~~~~~---~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~ 85 (315)
T 1ixk_A 13 RLGYSKLFAD---RYFQLWG-ERAIRIAEAME---KPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTRE 85 (315)
T ss_dssp HTTCCHHHHH---HHHHHHT-THHHHHHHHTT---SCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEEC
T ss_pred HhCCcHHHHH---HHHHHcc-HHHHHHHHHcC---CCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCC
Confidence 3457888855 5666678 78999999988 4789999999999999999999876 7889999999999888533
Q ss_pred -CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 106 -CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 106 -~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
..+..++.|.+|.+++||.+|++++.++++++|++|||+|||+|++|.++++.+.+.++|+|+|+++.+++.+++|+++
T Consensus 86 ~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~ 165 (315)
T 1ixk_A 86 PFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR 165 (315)
T ss_dssp SSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
+|+.+|+++++|+..++.. .++||+|++||||||+|+++++||..+. ++++++..++..|.++|+++
T Consensus 166 ~g~~~v~~~~~D~~~~~~~---~~~fD~Il~d~Pcsg~g~~~~~p~~~~~----------~~~~~~~~~~~~q~~~L~~~ 232 (315)
T 1ixk_A 166 LGVLNVILFHSSSLHIGEL---NVEFDKILLDAPCTGSGTIHKNPERKWN----------RTMDDIKFCQGLQMRLLEKG 232 (315)
T ss_dssp HTCCSEEEESSCGGGGGGG---CCCEEEEEEECCTTSTTTCC------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEECChhhcccc---cccCCEEEEeCCCCCcccccCChhHhhc----------CCHHHHHHHHHHHHHHHHHH
Confidence 9998999999999887542 2579999999999999999998887542 37899999999999999999
Q ss_pred hCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhh------ccc--ceeeeeecCCCCCCCC
Q 019692 265 LSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ------FLK--ALSIYFEPIQWKTKKA 335 (337)
Q Consensus 265 ~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~f~p~~~~~~~~ 335 (337)
.+++++ |.+||||||++++|||++|+++|+. .+|++++ ++ |..+|.. +.+ ..++|++||.+.|.|+
T Consensus 233 ~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~---~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGf 307 (315)
T 1ixk_A 233 LEVLKPGGILVYSTCSLEPEENEFVIQWALDN---FDVELLP-LK-YGEPALTNPFGIELSEEIKNARRLYPDVHETSGF 307 (315)
T ss_dssp HHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH---SSEEEEC-CC-SSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSE
T ss_pred HHhCCCCCEEEEEeCCCChHHhHHHHHHHHhc---CCCEEec-CC-ccccCcccccccccccccCCEEEECCCCCCcccE
Confidence 999886 8999999999999999999999963 4688865 23 2222211 100 2247999999999999
Q ss_pred CC
Q 019692 336 FL 337 (337)
Q Consensus 336 ~~ 337 (337)
|+
T Consensus 308 F~ 309 (315)
T 1ixk_A 308 FI 309 (315)
T ss_dssp EE
T ss_pred EE
Confidence 95
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=399.13 Aligned_cols=290 Identities=24% Similarity=0.270 Sum_probs=238.1
Q ss_pred HHcHHHHHHHHHHHHHHcCcc-cHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC
Q 019692 28 MLHKGAIQLALAQLLVRNKVK-SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG 105 (337)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~-~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~ 105 (337)
+.+|.|+.+ +|...+|.+ ++++|+++++ .++|+++|||++|++.+++.+.|++ ++.+++.+|+|+++.+...
T Consensus 6 ~~~P~~~~~---~~~~~~g~~~~~~~~~~a~~---~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~ 79 (479)
T 2frx_A 6 VYFPDAFLT---QMREAMPSTLSFDDFLAACQ---RPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERD 79 (479)
T ss_dssp -CCCHHHHH---HHGGGCC----CHHHHHHHT---SCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC----
T ss_pred ccCcHHHHH---HHHHHcCccHHHHHHHHhcC---CCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecC
Confidence 356777744 566667865 5799999998 4789999999999999999999976 7888899999999887532
Q ss_pred ----CCCCCchhhhcCeEEEechhhHHHHHHhCCC--CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Q 019692 106 ----CDLHVHPLIVNGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179 (337)
Q Consensus 106 ----~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~ 179 (337)
..+..++.|.+|.+++||.+|++++.+++++ +|++|||+|||||++|+++|+.+++.+.|+|+|+++.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~ 159 (479)
T 2frx_A 80 NEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLH 159 (479)
T ss_dssp -----CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred cccccCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 1578899999999999999999999999998 9999999999999999999999877799999999999999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 019692 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 259 (337)
Q Consensus 180 ~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ 259 (337)
+|++++|+.||.++++|+..+.... .+.||+|++||||||+|+++++||..+ .|+++++..++.+|.+
T Consensus 160 ~n~~r~g~~nv~~~~~D~~~~~~~~--~~~fD~Il~D~PcSg~G~~~~~pd~~~----------~~~~~~~~~l~~~q~~ 227 (479)
T 2frx_A 160 ANISRCGISNVALTHFDGRVFGAAV--PEMFDAILLDAPCSGEGVVRKDPDALK----------NWSPESNQEIAATQRE 227 (479)
T ss_dssp HHHHHHTCCSEEEECCCSTTHHHHS--TTCEEEEEEECCCCCGGGGGTCTTSSS----------SCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcEEEEeCCHHHhhhhc--cccCCEEEECCCcCCcccccCCHHHHh----------hcCHhHHHHHHHHHHH
Confidence 9999999999999999998765311 157999999999999999999888644 2478999999999999
Q ss_pred HHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCc-EEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 260 ALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGF-QLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 260 lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
+|.+|.+++++ |.|||||||++++|||++|+++|+ +++++ ++.+....|..........-.+|+.||.+.+.|+|+
T Consensus 228 iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~dGfF~ 305 (479)
T 2frx_A 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKE--TYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFV 305 (479)
T ss_dssp HHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHH--HSTTTEEECCCTTSSTTGGGGBCTTSCEEECTTTTTSCCEEE
T ss_pred HHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHH--HCCCceecccccccccccccccccCCeEEECCCCCCcCccEE
Confidence 99999999887 999999999999999999999995 35565 443322223211111111122799999999999995
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=399.93 Aligned_cols=279 Identities=23% Similarity=0.233 Sum_probs=233.0
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCC-eEEEEcCCCCCHHHHHHHHccCCcee---ecCCCCCeEEe
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKP-RYVRVNTLKMDVDSAVLELGKQFVVQ---KDDLVPDLLIL 102 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p-~~~RvN~lk~~~~~~~~~L~~~~~~~---~~~~~~~~~~~ 102 (337)
++.+|.|+.+ +|...+|. ++++|++++++ ++| +++|||++|+ +++.+.+ ++.++ +.+|+|++++
T Consensus 5 ~~~~P~w~~~---~~~~~~g~-e~~~~~~a~~~---~~~~~~lRvN~lk~--~~~~~~~--~~~~~~~~~~~~~~~~~~- 72 (456)
T 3m4x_A 5 ATTLPQQFIK---KYRLLLGE-EASDFFSALEQ---GSVKKGFRWNPLKP--AGLDMVQ--TYHSEELQPAPYSNEGFL- 72 (456)
T ss_dssp --CCCHHHHH---HHHHHHGG-GHHHHHHHHHH---CCCCCEEECCTTST--THHHHHH--HHTCSSCCBCTTCTTEEE-
T ss_pred hhhChHHHHH---HHHHHhCH-HHHHHHHHcCC---CCCCcEEEEcCccH--HHHHHhc--CCcccccCCCCCCcceEE-
Confidence 4678888855 55666664 59999999984 678 9999999998 5665544 34455 8899999988
Q ss_pred CCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Q 019692 103 PPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 103 ~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~ 182 (337)
. ..+..++.|.+|.+++||.+|++++.++++++|++|||+|||||++|+++|+.+++.+.|+|+|+++.+++.+++|+
T Consensus 73 ~--~~~~~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~ 150 (456)
T 3m4x_A 73 G--TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENI 150 (456)
T ss_dssp S--CCCTTSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred c--CCCCCChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3 33688999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 019692 183 KLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 262 (337)
Q Consensus 183 ~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~ 262 (337)
+++|+.||.++++|+..+.... .+.||+|++||||||+|+++++||..+. ++++++..++.+|+++|.
T Consensus 151 ~r~g~~nv~v~~~Da~~l~~~~--~~~FD~Il~DaPCSg~G~~rr~p~~~~~----------~~~~~~~~l~~~Q~~iL~ 218 (456)
T 3m4x_A 151 ERWGVSNAIVTNHAPAELVPHF--SGFFDRIVVDAPCSGEGMFRKDPNAIKE----------WTEESPLYCQKRQQEILS 218 (456)
T ss_dssp HHHTCSSEEEECCCHHHHHHHH--TTCEEEEEEECCCCCGGGTTTCHHHHHH----------CCTTHHHHHHHHHHHHHH
T ss_pred HHcCCCceEEEeCCHHHhhhhc--cccCCEEEECCCCCCccccccCHHHhhh----------cCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764321 1579999999999999999999887542 367889999999999999
Q ss_pred HHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCC---------CCCCcchhhcccceeeeeecCCCCC
Q 019692 263 HALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF---------PNGTAEASQFLKALSIYFEPIQWKT 332 (337)
Q Consensus 263 ~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~f~p~~~~~ 332 (337)
+|.+++++ |.|||||||++++|||++|++||+. ++ |++++.- +.|...+ ... .++|++||.+.|
T Consensus 219 ~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~--~~-~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~r~~P~~~~~ 292 (456)
T 3m4x_A 219 SAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN--YP-VTIEEIPLTQSVSSGRSEWGSVA-GLE--KTIRIWPHKDQG 292 (456)
T ss_dssp HHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHH--SS-EEEECCCCSSCCEECCGGGSSST-TGG--GSEEECTTTSSS
T ss_pred HHHHhcCCCcEEEEEEeecccccCHHHHHHHHHh--CC-CEEEecccccccccccccccccc-ccC--CeEEECCCCCCC
Confidence 99999987 8999999999999999999999963 44 8887532 1222211 111 237999999999
Q ss_pred CCCCC
Q 019692 333 KKAFL 337 (337)
Q Consensus 333 ~~~~~ 337 (337)
+|+|+
T Consensus 293 dGFF~ 297 (456)
T 3m4x_A 293 EGHFV 297 (456)
T ss_dssp SCEEE
T ss_pred cCeEE
Confidence 99996
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=383.19 Aligned_cols=287 Identities=28% Similarity=0.361 Sum_probs=248.5
Q ss_pred HHHcHHHHHHHHHHHHHHcCcccHHHHHHhcC-CCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCC
Q 019692 27 LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQ-TPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP 104 (337)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~-~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~ 104 (337)
-..+|.|+.+ +|...+| +.+++++++++ + ++|+++|||++|++.+++.+.|++ |+.+++++++|+++.++.
T Consensus 154 ~~~~P~w~~~---~~~~~~g-~~~~~~~~a~~~~---~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 226 (450)
T 2yxl_A 154 KYLAPSWLIE---RVKGILG-DETEDFFRSVNKR---HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKG 226 (450)
T ss_dssp HHTSCHHHHH---HHHHHHG-GGHHHHHHHHHCC---CCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEES
T ss_pred HhcCcHHHHH---HHHHHhh-HHHHHHHHhcCCC---CCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCC
Confidence 3567888855 5566677 78999999986 4 569999999999999999999976 888999999999999965
Q ss_pred CCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 105 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 105 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
...+..++.|.+|.+++||.+|++++.++++++|++|||+|||+|++|.+++..+++.++|+|+|+++.+++.+++++++
T Consensus 227 ~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~ 306 (450)
T 2yxl_A 227 PYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR 306 (450)
T ss_dssp CCCTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999987668999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 185 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 185 ~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
+|+.+|.++++|+..++.... .+.||+|++||||||+|+++++||..|. ++++++..++.+|..+|.++
T Consensus 307 ~g~~~v~~~~~D~~~~~~~~~-~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~----------~~~~~~~~l~~~q~~iL~~a 375 (450)
T 2yxl_A 307 MGIKIVKPLVKDARKAPEIIG-EEVADKVLLDAPCTSSGTIGKNPELRWR----------LREDKINEMSQLQRELLESA 375 (450)
T ss_dssp TTCCSEEEECSCTTCCSSSSC-SSCEEEEEEECCCCCGGGTTTSTTHHHH----------CCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcChhhcchhhc-cCCCCEEEEcCCCCCCeeeccChhhhhh----------CCHHHHHHHHHHHHHHHHHH
Confidence 999899999999988753221 1469999999999999999999987552 25678899999999999999
Q ss_pred hCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 265 LSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 265 ~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
.+++++ |.|||+|||++++|||++|+++|+ .+++|++++..+.| ..... .-++++.|+.+.+.|+|+
T Consensus 376 ~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~--~~~~~~~~~~~~~~--~~~~~--~~~~~~~P~~~~~dGff~ 443 (450)
T 2yxl_A 376 ARLVKPGGRLLYTTCSIFKEENEKNIRWFLN--VHPEFKLVPLKSPY--DPGFL--EGTMRAWPHRHSTIGFFY 443 (450)
T ss_dssp HTTEEEEEEEEEEESCCCGGGTHHHHHHHHH--HCSSCEECCCCSSS--EECSS--TTCEEECHHHHSSCCEEE
T ss_pred HHhcCCCcEEEEEeCCCChhhHHHHHHHHHH--hCCCCEEeeccccc--ccccC--CCeEEECCCCCCCCceEE
Confidence 999987 899999999999999999999995 46789987655445 11122 223799999999999995
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=369.00 Aligned_cols=277 Identities=23% Similarity=0.288 Sum_probs=239.8
Q ss_pred cHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCCCCC
Q 019692 30 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDL 108 (337)
Q Consensus 30 ~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
+|.|+. .+|...+| +..++++++++ .++|+++|||++|++.+++.+.|++ ++...+++++|+++.++....+
T Consensus 145 ~p~w~~---~~~~~~~g-~~~~~~~~~~~---~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 217 (429)
T 1sqg_A 145 HPSWLL---KRLQKAYP-EQWQSIVEANN---QRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPV 217 (429)
T ss_dssp SCHHHH---HHHHHHCT-TTHHHHHHHHT---SCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCG
T ss_pred CcHHHH---HHHHHHhh-HHHHHHHHhCC---CCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEECCCCCc
Confidence 566664 35666778 67899999987 4779999999999999999999876 8888999999999999876778
Q ss_pred CCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..++.|..|.+++||.+|++++.++++++|++|||+|||+|++|.++++.+.+ ++|+|+|+++.+++.++++++++|++
T Consensus 218 ~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~ 296 (429)
T 1sqg_A 218 HALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK 296 (429)
T ss_dssp GGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC
T ss_pred ccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999754 89999999999999999999999985
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+.++++|+..++.... .++||+|++||||||+|+++++||..|. ++++++..++.+|..+|.++.+++
T Consensus 297 -~~~~~~D~~~~~~~~~-~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~----------~~~~~~~~l~~~q~~~L~~a~~~L 364 (429)
T 1sqg_A 297 -ATVKQGDGRYPSQWCG-EQQFDRILLDAPCSATGVIRRHPDIKWL----------RRDRDIPELAQLQSEILDAIWPHL 364 (429)
T ss_dssp -CEEEECCTTCTHHHHT-TCCEEEEEEECCCCCGGGTTTCTTHHHH----------CCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred -eEEEeCchhhchhhcc-cCCCCEEEEeCCCCcccccCCCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999987642111 1579999999999999999999987552 257789999999999999999998
Q ss_pred CC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 269 GV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
++ |.|||||||++++|||++|.++|+ .+++|++++ + |. ..... +++.|+.+.++|+|+
T Consensus 365 kpGG~lvystcs~~~~ene~~v~~~l~--~~~~~~~~~--~-~~----~~~~~--~~~~P~~~~~dGff~ 423 (429)
T 1sqg_A 365 KTGGTLVYATCSVLPEENSLQIKAFLQ--RTADAELCE--T-GT----PEQPG--KQNLPGAEEGDGFFY 423 (429)
T ss_dssp EEEEEEEEEESCCCGGGTHHHHHHHHH--HCTTCEECS--S-BC----SSSBS--EEECCCTTSCCSEEE
T ss_pred CCCCEEEEEECCCChhhHHHHHHHHHH--hCCCCEEeC--C-CC----CCCCe--EEECCCCCCCCceEE
Confidence 87 899999999999999999999995 577899875 2 21 11122 689999999999995
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=350.82 Aligned_cols=239 Identities=21% Similarity=0.240 Sum_probs=189.1
Q ss_pred HHHHHHH-cCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCc-----------e----------eecC
Q 019692 38 LAQLLVR-NKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFV-----------V----------QKDD 94 (337)
Q Consensus 38 l~~~~~~-~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~-----------~----------~~~~ 94 (337)
|.+++.+ +| +....+..++.+ +.+..+|+|+++ +.+++...|+. +.. . .+..
T Consensus 23 Fd~~Y~~~~G-~~W~~~r~aL~~---~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 97 (359)
T 4fzv_A 23 FDMTYSVQFG-DLWPSIRVSLLS---EQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPAS 97 (359)
T ss_dssp HHHHHHHHHG-GGHHHHHHHHTS---CCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHcC---cchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCccc
Confidence 4455544 34 578888888874 567899999986 56677666653 110 0 0000
Q ss_pred -CCC---CeEEeCCCCCCCCchhhhcCe-----EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEE
Q 019692 95 -LVP---DLLILPPGCDLHVHPLIVNGC-----VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 165 (337)
Q Consensus 95 -~~~---~~~~~~~~~~~~~~~~~~~G~-----~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V 165 (337)
.++ ..+.++ ..++...+.|+.|. |++||.+||+++.+|+++||++|||+||||||||++|++.+ +.+.|
T Consensus 98 ~~~~~~l~~~~~~-~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l 175 (359)
T 4fzv_A 98 WACSPNLRCFTFD-RGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNL 175 (359)
T ss_dssp HHSCSSCCEEECC-TTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEE
T ss_pred ccCCccceEEecC-CCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcE
Confidence 011 123333 33566677776665 88899999999999999999999999999999999999975 45789
Q ss_pred EEEeCCHHHHHHHHHHHHHhCC------CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCc--cccCcccCccCCCCC
Q 019692 166 VACELNKERVRRLKDTIKLSGA------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS--GTAAERLDHLLPSHA 237 (337)
Q Consensus 166 ~avD~~~~~l~~l~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~--G~~~~~~d~~~~~~~ 237 (337)
+|+|+++.+++.+++|++++|. .+|.+.+.|+..+.... .+.||+||+||||||+ |+++++|+..+.
T Consensus 176 ~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~--~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~--- 250 (359)
T 4fzv_A 176 AANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE--GDTYDRVLVDVPCTTDRHSLHEEENNIFKR--- 250 (359)
T ss_dssp EEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS--TTCEEEEEEECCCCCHHHHTTCCTTCTTSG---
T ss_pred EEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc--cccCCEEEECCccCCCCCcccccChhhhhh---
Confidence 9999999999999999999986 36899999988765332 2579999999999997 777777776442
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 238 SGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
++++++..++.+|++||.+|++++++ |+|||||||++++|||+||++||+.
T Consensus 251 -------~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~ 302 (359)
T 4fzv_A 251 -------SRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIEL 302 (359)
T ss_dssp -------GGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHh
Confidence 47999999999999999999999987 8999999999999999999999964
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=334.14 Aligned_cols=256 Identities=28% Similarity=0.339 Sum_probs=204.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEe-CCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCCCC
Q 019692 62 VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLIL-PPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 139 (337)
Q Consensus 62 ~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~ 139 (337)
.++|+|+|||++|.+.+++.+.|++ ++.+++ +++|+++.+ .....+..++.|..|.+++||.+|++++.++++++|+
T Consensus 7 ~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~ 85 (274)
T 3ajd_A 7 GEKMQFIRVNTLKINPEVLKKRLENKGVVLEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDD 85 (274)
T ss_dssp --CCEEEEECTTTCCHHHHHHHHHTTTCEEEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCCCTTC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCCCCcC
Confidence 4789999999999999999999976 788888 999999988 3334678899999999999999999999999999999
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpP 218 (337)
+|||+|||+|++|.++++.+.+.++|+|+|+++.+++.+++|++++|+.++.++++|+.++.... ....+||+|++|||
T Consensus 86 ~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~P 165 (274)
T 3ajd_A 86 FILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAP 165 (274)
T ss_dssp EEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCC
Confidence 99999999999999999988777899999999999999999999999989999999988764310 00157999999999
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhc
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAM 297 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~ 297 (337)
|||+|+++++|. ++.+++..+...|.++|+++.+++++ |.+||+|||++++|||++|+++|+ .
T Consensus 166 cs~~g~~~~~p~--------------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~--~ 229 (274)
T 3ajd_A 166 CSGNIIKDKNRN--------------VSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ--K 229 (274)
T ss_dssp CC--------------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH--H
T ss_pred CCCCcccccCCC--------------CCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH--h
Confidence 999999987641 36888899999999999999998887 899999999999999999999995 4
Q ss_pred CCCcEEecCC-CCCC-cchhhcccceeeeeecCCCCCCCCCC
Q 019692 298 SFGFQLATPF-PNGT-AEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 298 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
+++|++++.- +.+. ...+.....-++|++||.++ +|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---ff~ 268 (274)
T 3ajd_A 230 RNDVELIIIKANEFKGINIKEGYIKGTLRVFPPNEP---FFI 268 (274)
T ss_dssp CSSEEEECCCSTTCTTSCEEECSSTTCEEECTTSCC---EEE
T ss_pred CCCcEEecCccccccCcccccccCCCeEEECCCCCC---EEE
Confidence 6789887532 1111 01111111233799999875 663
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=167.49 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=128.6
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...+++|.|+.|+.+..++...+ ++|.+|||+|||+|+++++++.. + ..|+++|+|+.+++.+++|++.+|+.+
T Consensus 190 ~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~- 263 (393)
T 4dmg_A 190 ALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV- 263 (393)
T ss_dssp TTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC-
T ss_pred hhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence 46678999999999988877654 46999999999999999999885 3 459999999999999999999999874
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 019692 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 270 (337)
Q Consensus 191 ~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~ 270 (337)
.+.++|+.++..... +.||+|++||||... +...+....+.+.+++..+++++++
T Consensus 264 ~~~~~D~~~~l~~~~--~~fD~Ii~dpP~f~~-----------------------~~~~~~~~~~~~~~ll~~a~~~Lkp 318 (393)
T 4dmg_A 264 DIRHGEALPTLRGLE--GPFHHVLLDPPTLVK-----------------------RPEELPAMKRHLVDLVREALRLLAE 318 (393)
T ss_dssp EEEESCHHHHHHTCC--CCEEEEEECCCCCCS-----------------------SGGGHHHHHHHHHHHHHHHHHTEEE
T ss_pred cEEEccHHHHHHHhc--CCCCEEEECCCcCCC-----------------------CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466899877543322 349999999998432 1234667788899999999999987
Q ss_pred -cEEEEEcCCCCcccCH--HHHHHHhchhcCCCcEEe
Q 019692 271 -ERVVYSTCSIHQVENE--DVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 271 -G~lvYsTCS~~~~ENe--~vv~~~l~~~~~~~~~~~ 304 (337)
|.|+|+|||.+..+++ ++|...+... ...+++.
T Consensus 319 GG~Lv~~s~s~~~~~~~f~~~v~~a~~~~-g~~~~i~ 354 (393)
T 4dmg_A 319 EGFLWLSSCSYHLRLEDLLEVARRAAADL-GRRLRVH 354 (393)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHH-TCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHh-CCeEEEE
Confidence 8999999999998886 6777666432 3344443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=150.17 Aligned_cols=131 Identities=21% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+++|++|||+|||||++|.++|+.+++.|+|+|+|+++.+++.+.+.+++. .||.++.+|+...........+||+|+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence 789999999999999999999999988899999999999998777766553 589999999987543221135799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-HhCCCCC-cEEEEE---cC---CCCcccCH
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH-ALSFPGV-ERVVYS---TC---SIHQVENE 286 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~-A~~~~~~-G~lvYs---TC---S~~~~ENe 286 (337)
+|.+- |+ |.++|.. +.++|++ |.+|++ +| ++.++||.
T Consensus 152 ~d~a~---------~~--------------------------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~ 196 (232)
T 3id6_C 152 VDIAQ---------PD--------------------------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIY 196 (232)
T ss_dssp ECCCC---------TT--------------------------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSST
T ss_pred ecCCC---------hh--------------------------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHH
Confidence 99761 11 3455544 3336776 888866 99 99999999
Q ss_pred HHHHHHhchhcCCCcEEec
Q 019692 287 DVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 287 ~vv~~~l~~~~~~~~~~~~ 305 (337)
+.+.++|+. .+|++..
T Consensus 197 ~~~~~~L~~---~gf~~~~ 212 (232)
T 3id6_C 197 KTEVEKLEN---SNFETIQ 212 (232)
T ss_dssp THHHHHHHH---TTEEEEE
T ss_pred HHHHHHHHH---CCCEEEE
Confidence 888889852 3688764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=161.08 Aligned_cols=163 Identities=19% Similarity=0.223 Sum_probs=126.3
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...+.+|.|..|.....+++.+ +|.+|||+|||+|+++.+++.. ..+|+++|+++.+++.+++|++.+|+.++
T Consensus 187 ~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~ 259 (382)
T 1wxx_A 187 RAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV 259 (382)
T ss_dssp STTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred hhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 3456778888887776665443 7889999999999999999987 36899999999999999999999999889
Q ss_pred EEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 191 EVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 191 ~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+++++|+.+...... ...+||+|++|||+.+.+ +..+....+.+..++..++++++
T Consensus 260 ~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~Lk 316 (382)
T 1wxx_A 260 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG-----------------------KKDVERAYRAYKEVNLRAIKLLK 316 (382)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS-----------------------TTSHHHHHHHHHHHHHHHHHTEE
T ss_pred eEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCC-----------------------hhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999877643110 014799999999986532 12345667788999999999988
Q ss_pred C-cEEEEEcCCCCcccC--HHHHHHHhchhcCCCcEEe
Q 019692 270 V-ERVVYSTCSIHQVEN--EDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 270 ~-G~lvYsTCS~~~~EN--e~vv~~~l~~~~~~~~~~~ 304 (337)
+ |.++++|||.+..++ ++.+...+.. .+..+++.
T Consensus 317 pgG~l~~~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~i 353 (382)
T 1wxx_A 317 EGGILATASCSHHMTEPLFYAMVAEAAQD-AHRLLRVV 353 (382)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 7 899999999888775 5666655432 23345554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-17 Score=157.05 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=121.1
Q ss_pred hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 019692 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NI 190 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v 190 (337)
..+++|.|..|.....++..++ ++|.+|||+|||+|+++..++.. +..+|+++|+++.+++.+++|++.+|+. ++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 3466788877777766666543 47899999999999999999885 4569999999999999999999999997 79
Q ss_pred EEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 191 EVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 191 ~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+++++|+.+..... ....+||+|++|||+.+.+ ...+......+..++..++++++
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~Lk 326 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-----------------------EKDLKAGLRAYFNVNFAGLNLVK 326 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-----------------------GGGHHHHHHHHHHHHHHHHTTEE
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCC-----------------------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999987654210 0024799999999976531 22345666778899999999998
Q ss_pred C-cEEEEEcCCCCcccC--HHHHHHHh
Q 019692 270 V-ERVVYSTCSIHQVEN--EDVIKSVL 293 (337)
Q Consensus 270 ~-G~lvYsTCS~~~~EN--e~vv~~~l 293 (337)
+ |.++|+||+.+..++ ++++....
T Consensus 327 pgG~lv~~~~~~~~~~~~~~~~v~~~~ 353 (396)
T 2as0_A 327 DGGILVTCSCSQHVDLQMFKDMIIAAG 353 (396)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 7 889999999876554 56665544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-17 Score=166.07 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=120.5
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
...+++|.|..|+....++.... +|.+|||+|||+|+++++++. .+..+|+++|+|+.+++.+++|++.+|+.
T Consensus 516 ~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~--~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~ 590 (703)
T 3v97_A 516 TDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGL--GGARSTTTVDMSRTYLEWAERNLRLNGLTGR 590 (703)
T ss_dssp SSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred cccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 45678899999999988887754 689999999999999998887 34568999999999999999999999987
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
+++++++|+.++.... .++||+|++||||.+.+.- ..++....+.+.+++..+++++
T Consensus 591 ~v~~i~~D~~~~l~~~--~~~fD~Ii~DPP~f~~~~~---------------------~~~~~~~~~~~~~ll~~a~~~L 647 (703)
T 3v97_A 591 AHRLIQADCLAWLREA--NEQFDLIFIDPPTFSNSKR---------------------MEDAFDVQRDHLALMKDLKRLL 647 (703)
T ss_dssp TEEEEESCHHHHHHHC--CCCEEEEEECCCSBC----------------------------CCBHHHHHHHHHHHHHHHE
T ss_pred ceEEEecCHHHHHHhc--CCCccEEEECCccccCCcc---------------------chhHHHHHHHHHHHHHHHHHhc
Confidence 7999999988753222 2579999999998764320 0111234567889999999988
Q ss_pred CC-cEEEEEcCCCCcccCHHHHHH
Q 019692 269 GV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
++ |.|++|+|+-....+++..+.
T Consensus 648 kpgG~L~~s~~~~~~~~~~~~l~~ 671 (703)
T 3v97_A 648 RAGGTIMFSNNKRGFRMDLDGLAK 671 (703)
T ss_dssp EEEEEEEEEECCTTCCCCHHHHHH
T ss_pred CCCcEEEEEECCcccccCHHHHHH
Confidence 87 899999999777777665543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-17 Score=158.07 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=124.3
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-C-
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-A- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~- 188 (337)
...+++|.|..|.....++..+ .+|.+|||+|||+|+++++++.. +..+|+++|+++.+++.+++|++.+|+ .
T Consensus 197 ~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~ 271 (396)
T 3c0k_A 197 QHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_dssp TTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred cccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 4567789998888887777766 47899999999999999999885 346999999999999999999999999 6
Q ss_pred cEEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 189 NIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
+++++++|+.+...... ...+||+|++|||+.+.+. + +. ....+.+..++..++++
T Consensus 272 ~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~--~--~~-------------------~~~~~~~~~~l~~~~~~ 328 (396)
T 3c0k_A 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENK--S--QL-------------------MGACRGYKDINMLAIQL 328 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCS--S--SS-------------------SCCCTHHHHHHHHHHHT
T ss_pred ceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCCh--h--HH-------------------HHHHHHHHHHHHHHHHh
Confidence 79999999877642110 0147999999999865421 0 00 01112356888999998
Q ss_pred CCC-cEEEEEcCCCCcc--cCHHHHHHHhchhcCCCcEEe
Q 019692 268 PGV-ERVVYSTCSIHQV--ENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 268 ~~~-G~lvYsTCS~~~~--ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+++ |.+++++|+.+.. ++++++...+.. .+..+++.
T Consensus 329 LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~i 367 (396)
T 3c0k_A 329 LNEGGILLTFSCSGLMTSDLFQKIIADAAID-AGRDVQFI 367 (396)
T ss_dssp EEEEEEEEEEECCTTCCHHHHHHHHHHHHHH-HTCCEEEE
T ss_pred cCCCcEEEEEeCCCcCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 887 8999999998776 667888765532 23345554
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=151.37 Aligned_cols=167 Identities=19% Similarity=0.146 Sum_probs=118.6
Q ss_pred chhhhcCeEEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...++.|.+..|......+...+. ..++.+|||+|||+|+.++.++.. + .+|+++|+|+.+++.+++|++.+|+.+
T Consensus 126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~ 202 (332)
T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQ 202 (332)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 345677888888888777777664 456889999999999999999884 3 499999999999999999999999875
Q ss_pred --EEEEeccCCCCCCCCC-CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Q 019692 190 --IEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS 266 (337)
Q Consensus 190 --v~~~~~D~~~~~~~~~-~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~ 266 (337)
++++++|+.++..... ...+||+|++||||.+.+.. .+ +....+.+..++..+.+
T Consensus 203 ~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~---~~-------------------~~~~~~~~~~ll~~~~~ 260 (332)
T 2igt_A 203 APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH---GE-------------------VWQLFDHLPLMLDICRE 260 (332)
T ss_dssp SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT---CC-------------------EEEHHHHHHHHHHHHHH
T ss_pred cceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCch---HH-------------------HHHHHHHHHHHHHHHHH
Confidence 9999999877542100 01479999999999875421 00 00123345788999999
Q ss_pred CCCC-cE-EEEEcCCCCcccCHHHHHHHhch-hcCCCcEEe
Q 019692 267 FPGV-ER-VVYSTCSIHQVENEDVIKSVLPI-AMSFGFQLA 304 (337)
Q Consensus 267 ~~~~-G~-lvYsTCS~~~~ENe~vv~~~l~~-~~~~~~~~~ 304 (337)
++++ |. ++.++|+.. .+.+....++.. ..+.|+++.
T Consensus 261 ~LkpgG~lli~~~~~~~--~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 261 ILSPKALGLVLTAYSIR--ASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp TBCTTCCEEEEEECCTT--SCHHHHHHHHHHHTTTSCSEEE
T ss_pred hcCcCcEEEEEECCCCC--CCHHHHHHHHHHHHHHcCCeEE
Confidence 9887 55 445556544 344555555542 234555553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=137.98 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=112.4
Q ss_pred hcCeEEEechh-------hHHHHHHhCCC-CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 115 VNGCVFLQGKA-------SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 115 ~~G~~~~Qd~s-------s~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
..+..+.|+.. +.+++.++.++ ++.+|||+|||+|..+..++... .++|+|+|+++.+++.+++|++.++
T Consensus 19 ~~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~ 96 (259)
T 3lpm_A 19 AENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQ 96 (259)
T ss_dssp TTTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCC
Confidence 34566677766 78888888888 89999999999999999998873 3499999999999999999999999
Q ss_pred CC-cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCc---cccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 019692 187 AA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS---GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 262 (337)
Q Consensus 187 ~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~---G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~ 262 (337)
+. +++++++|+.++..... .++||+|++|||+... |.. .++... ...+ .........++.
T Consensus 97 ~~~~v~~~~~D~~~~~~~~~-~~~fD~Ii~npPy~~~~~~~~~--~~~~~~------------~~a~-~~~~~~~~~~l~ 160 (259)
T 3lpm_A 97 LEDQIEIIEYDLKKITDLIP-KERADIVTCNPPYFATPDTSLK--NTNEHF------------RIAR-HEVMCTLEDTIR 160 (259)
T ss_dssp CTTTEEEECSCGGGGGGTSC-TTCEEEEEECCCC--------------------------------------HHHHHHHH
T ss_pred CcccEEEEECcHHHhhhhhc-cCCccEEEECCCCCCCccccCC--CCchHH------------Hhhh-ccccCCHHHHHH
Confidence 86 59999999988764321 2689999999998765 322 111000 0000 011122357889
Q ss_pred HHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 263 HALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 263 ~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
.+.+++++ |.+++. .+.++...+...+. ..+|...
T Consensus 161 ~~~~~LkpgG~l~~~----~~~~~~~~~~~~l~---~~~~~~~ 196 (259)
T 3lpm_A 161 VAASLLKQGGKANFV----HRPERLLDIIDIMR---KYRLEPK 196 (259)
T ss_dssp HHHHHEEEEEEEEEE----ECTTTHHHHHHHHH---HTTEEEE
T ss_pred HHHHHccCCcEEEEE----EcHHHHHHHHHHHH---HCCCceE
Confidence 99898887 777763 33444444555553 2355543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-16 Score=150.06 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=114.5
Q ss_pred hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--c
Q 019692 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--N 189 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~ 189 (337)
...++|.|..|.....+....+ .+|.+|||+|||+|+.++.+|.. +..+|+++|+++.+++.+++|++.+|+. +
T Consensus 189 ~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~ 264 (385)
T 2b78_A 189 DGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMAN 264 (385)
T ss_dssp SSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTT
T ss_pred ccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 4567788877777777776655 57899999999999999999874 3458999999999999999999999997 8
Q ss_pred EEEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 190 IEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 190 v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
++++++|+.+..+.. ....+||+|++|||+.+.+. . . .....+.+.+++..+.+++
T Consensus 265 v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~---~-~-------------------~~~~~~~~~~ll~~~~~~L 321 (385)
T 2b78_A 265 HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK---K-E-------------------VFSVSKDYHKLIRQGLEIL 321 (385)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC---------C-------------------CCCHHHHHHHHHHHHHHTE
T ss_pred eEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh---h-h-------------------HHHHHHHHHHHHHHHHHhc
Confidence 999999987643211 00147999999999865321 0 0 0123345678899999988
Q ss_pred CC-cEEEEEcCCCCc--ccCHHHHHHHh
Q 019692 269 GV-ERVVYSTCSIHQ--VENEDVIKSVL 293 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~--~ENe~vv~~~l 293 (337)
++ |.|++++|+-.. ++..+.+....
T Consensus 322 ~pgG~l~~~~~~~~~~~~~~~~~i~~~~ 349 (385)
T 2b78_A 322 SENGLIIASTNAANMTVSQFKKQIEKGF 349 (385)
T ss_dssp EEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 87 788888888765 33455555554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=144.38 Aligned_cols=177 Identities=11% Similarity=0.079 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHH-HHHcc-CCceeecCCCCCeE-EeCCCCCCCCchhhhcCeEEEechhhHHHHHHhCCCC
Q 019692 61 DVPKPRYVRVNTLKMDVDSAV-LELGK-QFVVQKDDLVPDLL-ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKP 137 (337)
Q Consensus 61 ~~~~p~~~RvN~lk~~~~~~~-~~L~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~ 137 (337)
....|+|.|+|..+.+.+... +.|.. ++..... .....+ .+.+. .......+..+...+++..+.++...+++.+
T Consensus 33 ~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (275)
T 1yb2_A 33 DEYGKFDESTNSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDFS-PMYFGRVIRRNTQIISEIDASYIIMRCGLRP 110 (275)
T ss_dssp SCCEEEETTTTEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECCC-GGGHHHHC------------------CCCCT
T ss_pred CCCCceeccccceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCCC-HHHHHhhccccccccChhhHHHHHHHcCCCC
Confidence 346788999986654332211 11111 1211111 112222 22322 1222344556677778888888888889999
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.++++++.+ |..+++++.+|+.+..+ .++||+|++|
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~----~~~fD~Vi~~ 186 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS----DQMYDAVIAD 186 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC----SCCEEEEEEC
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc----CCCccEEEEc
Confidence 999999999999999999998666689999999999999999999998 88889999999987322 2579999998
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+| .+ ..+|+.+.+++++ |.+++++|+.
T Consensus 187 ~~---------~~----------------------------~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 187 IP---------DP----------------------------WNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp CS---------CG----------------------------GGSHHHHHHTEEEEEEEEEEESSH
T ss_pred Cc---------CH----------------------------HHHHHHHHHHcCCCCEEEEEeCCH
Confidence 87 11 1457788888877 8899888865
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=137.63 Aligned_cols=143 Identities=26% Similarity=0.327 Sum_probs=114.7
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
+..+...+..+++..|||+|||+|..+..++...++..+|+|+|+|+.+++.+++|++..|+.+|+++++|+.+++...
T Consensus 192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~- 270 (354)
T 3tma_A 192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF- 270 (354)
T ss_dssp HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC-
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc-
Confidence 3444566778889999999999999999999986456899999999999999999999999988999999999876543
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
..||+|++|||+.- + ......+..++..+++.+.+++++ |.++++||
T Consensus 271 --~~~D~Ii~npPyg~------r------------------~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~------ 318 (354)
T 3tma_A 271 --PEVDRILANPPHGL------R------------------LGRKEGLFHLYWDFLRGALALLPPGGRVALLTL------ 318 (354)
T ss_dssp --CCCSEEEECCCSCC----------------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES------
T ss_pred --CCCCEEEECCCCcC------c------------------cCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC------
Confidence 45899999999731 0 111235667788999999998876 89999888
Q ss_pred CHHHHHHHhchhcCCCcEEec
Q 019692 285 NEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~~~~~~ 305 (337)
|+..++.+++ .+|+...
T Consensus 319 ~~~~~~~~~~----~g~~~~~ 335 (354)
T 3tma_A 319 RPALLKRALP----PGFALRH 335 (354)
T ss_dssp CHHHHHHHCC----TTEEEEE
T ss_pred CHHHHHHHhh----cCcEEEE
Confidence 5677777762 6777653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=127.58 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=98.8
Q ss_pred eEEEechh-hHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCc
Q 019692 118 CVFLQGKA-SSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AAN 189 (337)
Q Consensus 118 ~~~~Qd~s-s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~ 189 (337)
...++++. ...+...+. ++++.+|||+|||+|.++.++++.+++.++|+++|+++.+++.++++++++| ..+
T Consensus 55 ~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~ 134 (226)
T 1i1n_A 55 QATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR 134 (226)
T ss_dssp TEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred CceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCc
Confidence 34455544 223344454 7889999999999999999999987666799999999999999999999876 467
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+.++.+|+...... ...||+|+++++|.. +++.+.+.++
T Consensus 135 v~~~~~d~~~~~~~---~~~fD~i~~~~~~~~--------------------------------------~~~~~~~~Lk 173 (226)
T 1i1n_A 135 VQLVVGDGRMGYAE---EAPYDAIHVGAAAPV--------------------------------------VPQALIDQLK 173 (226)
T ss_dssp EEEEESCGGGCCGG---GCCEEEEEECSBBSS--------------------------------------CCHHHHHTEE
T ss_pred EEEEECCcccCccc---CCCcCEEEECCchHH--------------------------------------HHHHHHHhcC
Confidence 99999998765432 257999999998631 1234556677
Q ss_pred C-cEEEEEcCCCCcccCHH
Q 019692 270 V-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 270 ~-G~lvYsTCS~~~~ENe~ 287 (337)
+ |.+++++|+...+++..
T Consensus 174 pgG~lv~~~~~~~~~~~~~ 192 (226)
T 1i1n_A 174 PGGRLILPVGPAGGNQMLE 192 (226)
T ss_dssp EEEEEEEEESCTTSCEEEE
T ss_pred CCcEEEEEEecCCCceEEE
Confidence 6 89999999987766653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-14 Score=122.95 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=105.7
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+++|.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+ .+++++++|+.++..... ++||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID--CPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC--SCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc--CCceE
Confidence 467899999999999999999999876668999999999999999999999998 679999999988753322 57999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc--cCHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV--ENEDVI 289 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~--ENe~vv 289 (337)
|++|+|.--.+ +.... ...+ .+..++..+.+++++ |.++.++++-++. +....+
T Consensus 97 v~~~~~~~~~~------~~~~~----------~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 153 (197)
T 3eey_A 97 VMFNLGYLPSG------DHSIS----------TRPE-------TTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKV 153 (197)
T ss_dssp EEEEESBCTTS------CTTCB----------CCHH-------HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHH
T ss_pred EEEcCCcccCc------ccccc----------cCcc-------cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHH
Confidence 99998751100 00000 0111 234688888888887 7777776554332 233455
Q ss_pred HHHhchhcCCCcEEec
Q 019692 290 KSVLPIAMSFGFQLAT 305 (337)
Q Consensus 290 ~~~l~~~~~~~~~~~~ 305 (337)
..+++.....+|.+..
T Consensus 154 ~~~~~~l~~~~~~v~~ 169 (197)
T 3eey_A 154 LEFLKGVDQKKFIVQR 169 (197)
T ss_dssp HHHHTTSCTTTEEEEE
T ss_pred HHHHHhCCCCcEEEEE
Confidence 5566444455677643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=131.56 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=91.2
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.|++.+ +.++||++|||+|||+|..+.++|..+++.|+|+|+|+++++++.+++++++. .|+..+.+|...
T Consensus 60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~ 137 (233)
T 4df3_A 60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARF 137 (233)
T ss_dssp CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTC
T ss_pred hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccC
Confidence 4555544 45899999999999999999999999999999999999999999999988764 589999999876
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
..........+|+|++|.+.... ....+.++.+++|+ |.++.+
T Consensus 138 p~~~~~~~~~vDvVf~d~~~~~~----------------------------------~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVAQPEQ----------------------------------AAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GGGGTTTCCCEEEEEECCCCTTH----------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccceEEEEEEeccCChh----------------------------------HHHHHHHHHHhccCCCEEEEE
Confidence 54322224679999999883311 13568888888887 777665
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-15 Score=136.21 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=101.3
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~ 202 (337)
.....+... .++|++|||+|||+|+.+..++... ..+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++..
T Consensus 114 ~~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~--~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~ 189 (278)
T 2frn_A 114 KERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG 189 (278)
T ss_dssp HHHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC
T ss_pred HHHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc
Confidence 344444444 4679999999999999999999873 2379999999999999999999999976 9999999998875
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
..+||+|++|||++. ..++..+.+++++ |.+++++|+-.
T Consensus 190 ----~~~fD~Vi~~~p~~~------------------------------------~~~l~~~~~~LkpgG~l~~~~~~~~ 229 (278)
T 2frn_A 190 ----ENIADRILMGYVVRT------------------------------------HEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp ----CSCEEEEEECCCSSG------------------------------------GGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ----cCCccEEEECCchhH------------------------------------HHHHHHHHHHCCCCeEEEEEEeecc
Confidence 257999999999432 1346677777776 89999999843
Q ss_pred ---cccCHHHHHHHhchhcCCCcEE
Q 019692 282 ---QVENEDVIKSVLPIAMSFGFQL 303 (337)
Q Consensus 282 ---~~ENe~vv~~~l~~~~~~~~~~ 303 (337)
..+..+.+...++ ..||++
T Consensus 230 ~~~~~~~~~~i~~~~~---~~G~~~ 251 (278)
T 2frn_A 230 KLMPREPFETFKRITK---EYGYDV 251 (278)
T ss_dssp GGTTTTTHHHHHHHHH---HTTCEE
T ss_pred ccccccHHHHHHHHHH---HcCCee
Confidence 2344445555543 345554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=130.86 Aligned_cols=149 Identities=12% Similarity=0.205 Sum_probs=110.7
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
++.....++..++...++.+|||+|||+|+.+..++..+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+.+
T Consensus 47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 126 (248)
T 3tfw_A 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126 (248)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34555666666666678899999999999999999998765789999999999999999999999986 69999999876
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..+.....++||+|++|+++.. ....++.+.+++++ |.||+..+
T Consensus 127 ~l~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 127 SLESLGECPAFDLIFIDADKPN-----------------------------------NPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HHHTCCSCCCCSEEEECSCGGG-----------------------------------HHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHhcCCCCCeEEEEECCchHH-----------------------------------HHHHHHHHHHhcCCCeEEEEeCC
Confidence 4332221247999999987321 12467888888887 88888877
Q ss_pred CCC--------cccCHHHHHHHhch-hcCCCcEEe
Q 019692 279 SIH--------QVENEDVIKSVLPI-AMSFGFQLA 304 (337)
Q Consensus 279 S~~--------~~ENe~vv~~~l~~-~~~~~~~~~ 304 (337)
... ..++...+..+++. ..++.|+..
T Consensus 172 ~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (248)
T 3tfw_A 172 VRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTAT 206 (248)
T ss_dssp SGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CcCCcccCccccchHHHHHHHHHHHHhhCCCEEEE
Confidence 655 22333445555542 246677664
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-14 Score=129.01 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=110.3
Q ss_pred CeEEEechhhHHHHHHhCC--CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 117 GCVFLQGKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
+.++.+.....++..+++. .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++++|+.++++++
T Consensus 87 ~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~ 165 (276)
T 2b3t_A 87 ATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ 165 (276)
T ss_dssp TSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 3444455555555544432 568899999999999999999875 4579999999999999999999999998899999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCCCccc-------cCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGT-------AAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
+|+.+..+ .++||+|+++|||.+.+. +...|+..+ ... ......+..++..+.++
T Consensus 166 ~d~~~~~~----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al-----------~~~---~~g~~~~~~~l~~~~~~ 227 (276)
T 2b3t_A 166 SDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTAL-----------VAA---DSGMADIVHIIEQSRNA 227 (276)
T ss_dssp CSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTT-----------BCH---HHHTHHHHHHHHHHGGG
T ss_pred cchhhhcc----cCCccEEEECCCCCCccccccChhhhhcCcHHHH-----------cCC---CcHHHHHHHHHHHHHHh
Confidence 99877532 257999999999988743 211221110 000 11224457899999998
Q ss_pred CCC-cEEEEEcCCCCcccCHHHHHHHhc
Q 019692 268 PGV-ERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 268 ~~~-G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+++ |.+++..+. .+.+.+..+++
T Consensus 228 LkpgG~l~~~~~~----~~~~~~~~~l~ 251 (276)
T 2b3t_A 228 LVSGGFLLLEHGW----QQGEAVRQAFI 251 (276)
T ss_dssp EEEEEEEEEECCS----SCHHHHHHHHH
T ss_pred cCCCCEEEEEECc----hHHHHHHHHHH
Confidence 887 788876543 34455666664
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=142.85 Aligned_cols=124 Identities=14% Similarity=0.030 Sum_probs=97.8
Q ss_pred EechhhHHHHH---HhCC--CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEE
Q 019692 121 LQGKASSMVAA---ALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVL 193 (337)
Q Consensus 121 ~Qd~ss~l~~~---~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~ 193 (337)
.|..+..+... .+.. ++|.+|||+|||+|++++.++...++.++|+++|+++.+++.+++|++.+|+.+ ++++
T Consensus 31 ~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~ 110 (392)
T 3axs_A 31 RMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH 110 (392)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45555555422 2222 568999999999999999999976555799999999999999999999999976 9999
Q ss_pred eccCCCCCC-CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcE
Q 019692 194 HGDFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER 272 (337)
Q Consensus 194 ~~D~~~~~~-~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~ 272 (337)
++|+.++.. .. ...||+|++||+|+. ..+++.|++++++|.
T Consensus 111 ~~Da~~~l~~~~--~~~fD~V~lDP~g~~------------------------------------~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 111 GMEANFFLRKEW--GFGFDYVDLDPFGTP------------------------------------VPFIESVALSMKRGG 152 (392)
T ss_dssp CSCHHHHHHSCC--SSCEEEEEECCSSCC------------------------------------HHHHHHHHHHEEEEE
T ss_pred eCCHHHHHHHhh--CCCCcEEEECCCcCH------------------------------------HHHHHHHHHHhCCCC
Confidence 999876543 22 247999999997431 247888888778777
Q ss_pred EEEEcCCCCc
Q 019692 273 VVYSTCSIHQ 282 (337)
Q Consensus 273 lvYsTCS~~~ 282 (337)
++|+||+-..
T Consensus 153 ll~~t~t~~~ 162 (392)
T 3axs_A 153 ILSLTATDTA 162 (392)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEecchh
Confidence 9999997655
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=120.49 Aligned_cols=136 Identities=12% Similarity=0.103 Sum_probs=106.8
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
+|.+ .++.....+...+.++++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++++|+.+++++.+
T Consensus 20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 97 (204)
T 3e05_A 20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA 97 (204)
T ss_dssp TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3666 555555666777889999999999999999999999884 46899999999999999999999999988999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV 274 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv 274 (337)
|+.+..... ..||+|+++.+.. + ...+++.+.+++++ |.++
T Consensus 98 d~~~~~~~~---~~~D~i~~~~~~~---------~--------------------------~~~~l~~~~~~LkpgG~l~ 139 (204)
T 3e05_A 98 FAPEGLDDL---PDPDRVFIGGSGG---------M--------------------------LEEIIDAVDRRLKSEGVIV 139 (204)
T ss_dssp CTTTTCTTS---CCCSEEEESCCTT---------C--------------------------HHHHHHHHHHHCCTTCEEE
T ss_pred ChhhhhhcC---CCCCEEEECCCCc---------C--------------------------HHHHHHHHHHhcCCCeEEE
Confidence 987654432 5699999987632 0 13678888887776 8888
Q ss_pred EEcCCCCcccCHHHHHHHhc
Q 019692 275 YSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 275 YsTCS~~~~ENe~vv~~~l~ 294 (337)
+++++. ++...+...++
T Consensus 140 ~~~~~~---~~~~~~~~~l~ 156 (204)
T 3e05_A 140 LNAVTL---DTLTKAVEFLE 156 (204)
T ss_dssp EEECBH---HHHHHHHHHHH
T ss_pred EEeccc---ccHHHHHHHHH
Confidence 876653 44555555553
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=132.91 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.+..+.+|++|||+|||+|..+..+|...+ .++|+|+|+++.+++.+++|++.+|+.|+.++++|+.+. +. ..+|
T Consensus 113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~ 187 (272)
T 3a27_A 113 MAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVA 187 (272)
T ss_dssp HHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCE
T ss_pred HHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCc
Confidence 344567899999999999999999999853 569999999999999999999999999999999999887 33 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 285 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~EN 285 (337)
|+|++|||. +. .+++..+++.+++|.++|.+|.....+.
T Consensus 188 D~Vi~d~p~---~~---------------------------------~~~l~~~~~~LkpgG~l~~s~~~~~~~~ 226 (272)
T 3a27_A 188 DRVIMGYVH---KT---------------------------------HKFLDKTFEFLKDRGVIHYHETVAEKIM 226 (272)
T ss_dssp EEEEECCCS---SG---------------------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGT
T ss_pred eEEEECCcc---cH---------------------------------HHHHHHHHHHcCCCCEEEEEEcCccccc
Confidence 999999995 11 1457777777788778888888775543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-15 Score=142.97 Aligned_cols=122 Identities=21% Similarity=0.162 Sum_probs=95.6
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh---------------C
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS---------------G 186 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~---------------g 186 (337)
|.....+....+...+|.+|||+|||+|.+++.++..++ ..+|+++|+++.+++.+++|++.+ |
T Consensus 32 ~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g 110 (378)
T 2dul_A 32 MALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG 110 (378)
T ss_dssp GHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC
Confidence 444444433222222689999999999999999999864 468999999999999999999999 8
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC
Q 019692 187 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS 266 (337)
Q Consensus 187 ~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~ 266 (337)
+.+++++++|+..+.... ...||+|++||||+. ..+|+.|++
T Consensus 111 l~~i~v~~~Da~~~~~~~--~~~fD~I~lDP~~~~------------------------------------~~~l~~a~~ 152 (378)
T 2dul_A 111 EKTIVINHDDANRLMAER--HRYFHFIDLDPFGSP------------------------------------MEFLDTALR 152 (378)
T ss_dssp SSEEEEEESCHHHHHHHS--TTCEEEEEECCSSCC------------------------------------HHHHHHHHH
T ss_pred CCceEEEcCcHHHHHHhc--cCCCCEEEeCCCCCH------------------------------------HHHHHHHHH
Confidence 888999999987664322 146999999999753 256888888
Q ss_pred CCCCcEEEEEcCCCCc
Q 019692 267 FPGVERVVYSTCSIHQ 282 (337)
Q Consensus 267 ~~~~G~lvYsTCS~~~ 282 (337)
.+++|.++|.||+-..
T Consensus 153 ~lk~gG~l~vt~td~~ 168 (378)
T 2dul_A 153 SAKRRGILGVTATDGA 168 (378)
T ss_dssp HEEEEEEEEEEECCHH
T ss_pred hcCCCCEEEEEeecch
Confidence 7787669999998555
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=132.45 Aligned_cols=143 Identities=8% Similarity=0.066 Sum_probs=108.3
Q ss_pred hhhhcCeEEEechhhHHHHHHh-CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 112 PLIVNGCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l-~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
..|.+++...|+..+.++.... ...+|.+|||+| |+|..+..++.. ++.++|+++|+++.+++.+++|++++|+.+|
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v 223 (373)
T 2qm3_A 146 HEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDI 223 (373)
T ss_dssp GGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred hhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCE
Confidence 3466667777777666654432 334689999999 999999998875 3447999999999999999999999998889
Q ss_pred EEEeccCCC-CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 191 EVLHGDFLN-LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 191 ~~~~~D~~~-~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+++.+|+.+ ++... .++||+|++||||...| ...+|..+.+.++
T Consensus 224 ~~~~~D~~~~l~~~~--~~~fD~Vi~~~p~~~~~---------------------------------~~~~l~~~~~~Lk 268 (373)
T 2qm3_A 224 EIFTFDLRKPLPDYA--LHKFDTFITDPPETLEA---------------------------------IRAFVGRGIATLK 268 (373)
T ss_dssp EEECCCTTSCCCTTT--SSCBSEEEECCCSSHHH---------------------------------HHHHHHHHHHTBC
T ss_pred EEEEChhhhhchhhc--cCCccEEEECCCCchHH---------------------------------HHHHHHHHHHHcc
Confidence 999999988 44221 24799999999975321 1578899999888
Q ss_pred C-c-EEEEEcCCCCcccCH---HHHHHHh
Q 019692 270 V-E-RVVYSTCSIHQVENE---DVIKSVL 293 (337)
Q Consensus 270 ~-G-~lvYsTCS~~~~ENe---~vv~~~l 293 (337)
+ | .++|++|+ ..++. ..+..++
T Consensus 269 pgG~~~~~~~~~--~~~~~~~~~~~~~~l 295 (373)
T 2qm3_A 269 GPRCAGYFGITR--RESSLDKWREIQKLL 295 (373)
T ss_dssp STTCEEEEEECT--TTCCHHHHHHHHHHH
T ss_pred cCCeEEEEEEec--CcCCHHHHHHHHHHH
Confidence 7 7 45888887 33444 5566665
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=120.95 Aligned_cols=142 Identities=19% Similarity=0.162 Sum_probs=96.6
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+++|++|||+|||+|..+..+++. .++|+|+|+|+.+++.++++++..|+.++++++.|+..+.... .++||.|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~--~~~fD~v 93 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV--REPIRAA 93 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC--CSCEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc--cCCcCEE
Confidence 3568999999999999999999886 5899999999999999999999999988999998877753222 2579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc---ccCHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ---VENEDVI 289 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~---~ENe~vv 289 (337)
+++++.--.+ ...+......+...|+.+.+++++ |.++.+.++-++ +|.+. +
T Consensus 94 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~ 149 (185)
T 3mti_A 94 IFNLGYLPSA-----------------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDA-V 149 (185)
T ss_dssp EEEEC----------------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHH-H
T ss_pred EEeCCCCCCc-----------------------chhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHH-H
Confidence 9986421100 111222334456778888888887 777776666543 23333 3
Q ss_pred HHHhchhcCCCcEEe
Q 019692 290 KSVLPIAMSFGFQLA 304 (337)
Q Consensus 290 ~~~l~~~~~~~~~~~ 304 (337)
..++......+|.+.
T Consensus 150 ~~~~~~l~~~~~~~~ 164 (185)
T 3mti_A 150 LEYVIGLDQRVFTAM 164 (185)
T ss_dssp HHHHHHSCTTTEEEE
T ss_pred HHHHHhCCCceEEEE
Confidence 444433334456654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=136.12 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=70.7
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC----
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY---- 207 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~---- 207 (337)
.++.. +.+|||+|||+|.+++.+|.. ..+|+|+|+++.+++.+++|++.+|++|++++.+|+.++.......
T Consensus 209 ~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~ 284 (369)
T 3bt7_A 209 VTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 284 (369)
T ss_dssp HTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCT
T ss_pred HhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccc
Confidence 34443 689999999999999988874 3699999999999999999999999999999999987653211000
Q ss_pred ---------CCccEEEECCCCCCc
Q 019692 208 ---------SEVRAILLDPSCSGS 222 (337)
Q Consensus 208 ---------~~fD~IlvDpPCSg~ 222 (337)
.+||+|++|||++|.
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~g~ 308 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRSGL 308 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTTCC
T ss_pred cccccccccCCCCEEEECcCcccc
Confidence 269999999998753
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=119.83 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=101.3
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 198 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~ 198 (337)
..+..-..++...+.+.++++|||+|||+|..+..++.. .++|+++|+++.+++.++++++++|+. +++++.+|+.
T Consensus 38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 114 (204)
T 3njr_A 38 ITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP 114 (204)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence 334444556667788899999999999999999999987 479999999999999999999999998 8999999998
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+..... ..||+|++++.. + +. +++.+.+.+++ |.+++++
T Consensus 115 ~~~~~~---~~~D~v~~~~~~----------~--------------------------~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 115 AALADL---PLPEAVFIGGGG----------S--------------------------QA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp GGGTTS---CCCSEEEECSCC----------C--------------------------HH-HHHHHHHHSCTTCEEEEEE
T ss_pred hhcccC---CCCCEEEECCcc----------c--------------------------HH-HHHHHHHhcCCCcEEEEEe
Confidence 843332 469999987621 0 13 67888887776 8999988
Q ss_pred CCCCcccCHHHHHHHhc
Q 019692 278 CSIHQVENEDVIKSVLP 294 (337)
Q Consensus 278 CS~~~~ENe~vv~~~l~ 294 (337)
|+. ++...+...++
T Consensus 155 ~~~---~~~~~~~~~l~ 168 (204)
T 3njr_A 155 VTL---ESETLLTQLHA 168 (204)
T ss_dssp CSH---HHHHHHHHHHH
T ss_pred cCc---ccHHHHHHHHH
Confidence 864 55555555554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=119.98 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=97.0
Q ss_pred CCCCCCeEEeecCC-chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG-~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.++++.+|||+||| +|..+..++... ..+|+++|+++.+++.++++++.+|+ +++++++|+..+.... .++||+
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~--~~~fD~ 126 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV--EGTFDV 126 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC--CSCEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc--cCceeE
Confidence 45789999999999 999999999875 47999999999999999999999998 8999999976543322 267999
Q ss_pred EEECCCCCCccccCcc-cCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHH
Q 019692 213 ILLDPSCSGSGTAAER-LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIK 290 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~ 290 (337)
|++|||+...+.-... +...+ .+. . . -......+++.+.+++++ |.+++.+.+ .+ ++...+.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~----~~~-~-----~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~-~~~~~~~ 190 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAI----GGG-K-----Y----GEEFSVKLLEEAFDHLNPGGKVALYLPD-KE-KLLNVIK 190 (230)
T ss_dssp EEECCCCC-------------------CC-S-----S----SCHHHHHHHHHHGGGEEEEEEEEEEEES-CH-HHHHHHH
T ss_pred EEECCCCcCCccccccChhhhh----ccC-c-----c----chHHHHHHHHHHHHHhCCCeEEEEEecc-cH-hHHHHHH
Confidence 9999998765431110 00000 000 0 0 001226789999998887 777665433 22 3333344
Q ss_pred HHhchhcCCCcEEe
Q 019692 291 SVLPIAMSFGFQLA 304 (337)
Q Consensus 291 ~~l~~~~~~~~~~~ 304 (337)
..++ ..||++.
T Consensus 191 ~~l~---~~g~~~~ 201 (230)
T 3evz_A 191 ERGI---KLGYSVK 201 (230)
T ss_dssp HHHH---HTTCEEE
T ss_pred HHHH---HcCCceE
Confidence 4442 3466654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=123.36 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=107.4
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~ 197 (337)
..+++....++..++...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|+
T Consensus 40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 119 (221)
T 3u81_A 40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS 119 (221)
T ss_dssp GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence 3456666777777777778899999999999999999998766789999999999999999999999986 499999998
Q ss_pred CCCCCCCC---CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE
Q 019692 198 LNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 198 ~~~~~~~~---~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
.+..+... ..++||+|++|+++... ....+++... +++++ |.+
T Consensus 120 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~--------------------------------~~~~~~~~~~-~~LkpgG~l 166 (221)
T 3u81_A 120 QDLIPQLKKKYDVDTLDMVFLDHWKDRY--------------------------------LPDTLLLEKC-GLLRKGTVL 166 (221)
T ss_dssp HHHGGGTTTTSCCCCCSEEEECSCGGGH--------------------------------HHHHHHHHHT-TCCCTTCEE
T ss_pred HHHHHHHHHhcCCCceEEEEEcCCcccc--------------------------------hHHHHHHHhc-cccCCCeEE
Confidence 65432211 11579999999763210 0123456665 77776 889
Q ss_pred EEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 274 VYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 274 vYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
|+.+|.... .....+ ++. .+++|+..
T Consensus 167 v~~~~~~~~--~~~~~~-~l~--~~~~~~~~ 192 (221)
T 3u81_A 167 LADNVIVPG--TPDFLA-YVR--GSSSFECT 192 (221)
T ss_dssp EESCCCCCC--CHHHHH-HHH--HCTTEEEE
T ss_pred EEeCCCCcc--hHHHHH-HHh--hCCCceEE
Confidence 888887432 234443 442 35566654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=130.07 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=72.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+++|++|||+|||+|++++.+|.. +..+|+|+|+|+.+++.+++|++.+|+.+ |+++++|+.++... ..||.|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~----~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc----cCCCEE
Confidence 478999999999999999999886 45689999999999999999999999976 99999999987643 579999
Q ss_pred EECCCCCC
Q 019692 214 LLDPSCSG 221 (337)
Q Consensus 214 lvDpPCSg 221 (337)
++|+|.+.
T Consensus 197 i~~~p~~~ 204 (278)
T 3k6r_A 197 LMGYVVRT 204 (278)
T ss_dssp EECCCSSG
T ss_pred EECCCCcH
Confidence 99999654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=131.95 Aligned_cols=89 Identities=27% Similarity=0.316 Sum_probs=75.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~ 209 (337)
..+.+.++++|||+|||+|..+..++.. ..+|+|+|+++.+++.+++|++.+|+.|++++++|+.+..... ....+
T Consensus 280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp HHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred HhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence 4456778899999999999999999886 4799999999999999999999999999999999998753321 01247
Q ss_pred ccEEEECCCCCCc
Q 019692 210 VRAILLDPSCSGS 222 (337)
Q Consensus 210 fD~IlvDpPCSg~ 222 (337)
||+|++|||++|.
T Consensus 357 fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 357 FDKVLLDPARAGA 369 (433)
T ss_dssp CSEEEECCCTTCC
T ss_pred CCEEEECCCCccH
Confidence 9999999998874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-14 Score=123.21 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=106.0
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 200 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~ 200 (337)
+.....++..++...++.+|||+|||+|+.+.+++..+.+.++|+++|+++.+++.+++++++.|+.+ |+++.+|+.+.
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS 122 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 45556666666666788999999999999999999987656899999999999999999999999875 99999998654
Q ss_pred CCCC--CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKD--PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~--~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+.. ....+||+|++|++++. ...+++.+.+++++ |.++...
T Consensus 123 ~~~~~~~~~~~fD~v~~d~~~~~-----------------------------------~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 123 LQQIENEKYEPFDFIFIDADKQN-----------------------------------NPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp HHHHHHTTCCCCSEEEECSCGGG-----------------------------------HHHHHHHHHHTCCTTCEEEEES
T ss_pred HHHHHhcCCCCcCEEEEcCCcHH-----------------------------------HHHHHHHHHHhcCCCcEEEEeC
Confidence 3211 00146999999988431 13578888888887 7777655
Q ss_pred CCCC--------cccCHHHHHHHhch-hcCCCcEE
Q 019692 278 CSIH--------QVENEDVIKSVLPI-AMSFGFQL 303 (337)
Q Consensus 278 CS~~--------~~ENe~vv~~~l~~-~~~~~~~~ 303 (337)
+... ..++...+..|++. ..++.|+.
T Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 202 (223)
T 3duw_A 168 VVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSA 202 (223)
T ss_dssp CSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCcCCcccCccccchHHHHHHHHHHHHhhCCCeEE
Confidence 5443 12333445555542 23555554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=121.92 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=81.8
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~ 199 (337)
+.......+...+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.+|+.+ ++++++|+.+
T Consensus 77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 344455667777889999999999999999999999987777899999999999999999999999877 9999999986
Q ss_pred CCCCCCCCCCccEEEECCC
Q 019692 200 LDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpP 218 (337)
..+ ..+||+|++|+|
T Consensus 157 ~~~----~~~~D~v~~~~~ 171 (255)
T 3mb5_A 157 GIE----EENVDHVILDLP 171 (255)
T ss_dssp CCC----CCSEEEEEECSS
T ss_pred ccC----CCCcCEEEECCC
Confidence 532 257999999988
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=123.35 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=106.0
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEE
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVL 193 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~ 193 (337)
..|..++|...+.++..++...++.+|||+|||+|..+..++..+. .++|+++|+++.+++.+++++++.|+. +|.++
T Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 110 (233)
T 2gpy_A 32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELL 110 (233)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4567778888888888888888899999999999999999999864 589999999999999999999999985 59999
Q ss_pred eccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cE
Q 019692 194 HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ER 272 (337)
Q Consensus 194 ~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~ 272 (337)
.+|+.+..+.....++||+|++|++++. +..+++.+.+++++ |.
T Consensus 111 ~~d~~~~~~~~~~~~~fD~I~~~~~~~~-----------------------------------~~~~l~~~~~~L~pgG~ 155 (233)
T 2gpy_A 111 FGDALQLGEKLELYPLFDVLFIDAAKGQ-----------------------------------YRRFFDMYSPMVRPGGL 155 (233)
T ss_dssp CSCGGGSHHHHTTSCCEEEEEEEGGGSC-----------------------------------HHHHHHHHGGGEEEEEE
T ss_pred ECCHHHHHHhcccCCCccEEEECCCHHH-----------------------------------HHHHHHHHHHHcCCCeE
Confidence 9998875221100157999999988541 24678888888887 88
Q ss_pred EEEEcCCC
Q 019692 273 VVYSTCSI 280 (337)
Q Consensus 273 lvYsTCS~ 280 (337)
++++++.+
T Consensus 156 lv~~~~~~ 163 (233)
T 2gpy_A 156 ILSDNVLF 163 (233)
T ss_dssp EEEETTTC
T ss_pred EEEEcCCc
Confidence 88886544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=121.33 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=78.6
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~ 203 (337)
....+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.. |..+++++.+|+.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 84 DASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3455666778899999999999999999999998766789999999999999999999998 877899999999876322
Q ss_pred CCCCCCccEEEECCC
Q 019692 204 DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ~~~~~~fD~IlvDpP 218 (337)
.++||+|++|+|
T Consensus 164 ---~~~~D~v~~~~~ 175 (258)
T 2pwy_A 164 ---EAAYDGVALDLM 175 (258)
T ss_dssp ---TTCEEEEEEESS
T ss_pred ---CCCcCEEEECCc
Confidence 257999999887
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-13 Score=115.26 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=94.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+|+ +++++++|+.+++ .+||+|
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~D~v 116 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------SRVDIV 116 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------CCCSEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC------CCCCEE
Confidence 4567899999999999999999886 345899999999999999999999888 7999999998863 369999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHh
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
++|||+.-. ++.. ...+|+.+.+++ | .+|++| +.+.++.+.+.+++
T Consensus 117 ~~~~p~~~~---~~~~---------------------------~~~~l~~~~~~l--~-~~~~~~-~~~~~~~~~~~~~l 162 (207)
T 1wy7_A 117 IMNPPFGSQ---RKHA---------------------------DRPFLLKAFEIS--D-VVYSIH-LAKPEVRRFIEKFS 162 (207)
T ss_dssp EECCCCSSS---STTT---------------------------THHHHHHHHHHC--S-EEEEEE-ECCHHHHHHHHHHH
T ss_pred EEcCCCccc---cCCc---------------------------hHHHHHHHHHhc--C-cEEEEE-eCCcCCHHHHHHHH
Confidence 999996432 1110 135566776655 3 478888 34556677777776
Q ss_pred chhcCCCcEE
Q 019692 294 PIAMSFGFQL 303 (337)
Q Consensus 294 ~~~~~~~~~~ 303 (337)
. ..||++
T Consensus 163 ~---~~g~~~ 169 (207)
T 1wy7_A 163 W---EHGFVV 169 (207)
T ss_dssp H---HTTEEE
T ss_pred H---HCCCeE
Confidence 4 345555
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=118.47 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCCC-ccEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYSE-VRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~~-fD~I 213 (337)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++|++.+|+ .+++++++|+.++.+... .++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-NQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-SSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-cCCCCCEE
Confidence 6889999999999999987664 346899999999999999999999998 689999999887644311 257 9999
Q ss_pred EECCCC
Q 019692 214 LLDPSC 219 (337)
Q Consensus 214 lvDpPC 219 (337)
++|||+
T Consensus 130 ~~~~~~ 135 (201)
T 2ift_A 130 FLDPPF 135 (201)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999994
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=122.38 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=78.0
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 204 (337)
...+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.+|+ .+++++.+|+.+..+
T Consensus 101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 178 (277)
T 1o54_A 101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-- 178 (277)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--
Confidence 34556677889999999999999999999999876678999999999999999999999998 579999999887622
Q ss_pred CCCCCccEEEECCCC
Q 019692 205 PAYSEVRAILLDPSC 219 (337)
Q Consensus 205 ~~~~~fD~IlvDpPC 219 (337)
.+.||+|++|+|+
T Consensus 179 --~~~~D~V~~~~~~ 191 (277)
T 1o54_A 179 --EKDVDALFLDVPD 191 (277)
T ss_dssp --CCSEEEEEECCSC
T ss_pred --CCccCEEEECCcC
Confidence 1479999999883
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=128.65 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++++|||+|||+|..+..+|.. ..+|+|+|+++.+++.+++|++.+|++ ++++.+|+.++... +||+|+
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~-----~fD~Vv 358 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK-----GFDTVI 358 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT-----TCSEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc-----CCCEEE
Confidence 567899999999999999999885 368999999999999999999999998 99999999887532 699999
Q ss_pred ECCCCCCc
Q 019692 215 LDPSCSGS 222 (337)
Q Consensus 215 vDpPCSg~ 222 (337)
+|||++|.
T Consensus 359 ~dPPr~g~ 366 (425)
T 2jjq_A 359 VDPPRAGL 366 (425)
T ss_dssp ECCCTTCS
T ss_pred EcCCccch
Confidence 99997754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=114.91 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++++.+|+.+++++++|+.++..... ..+||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT-TSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC-SSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc-CCCccEEEE
Confidence 57899999999999999987774 456899999999999999999999999889999999887643211 257999999
Q ss_pred CCCCC
Q 019692 216 DPSCS 220 (337)
Q Consensus 216 DpPCS 220 (337)
|||..
T Consensus 120 ~~p~~ 124 (189)
T 3p9n_A 120 DPPYN 124 (189)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 99944
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=120.63 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=94.1
Q ss_pred EechhhHHHHHHh---CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEec
Q 019692 121 LQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHG 195 (337)
Q Consensus 121 ~Qd~ss~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~--~v~~~~~ 195 (337)
++.....+...++ .++++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+. +|+++++
T Consensus 37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 3444444444443 3444559999999999999999998876789999999999999999999999987 6999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV 274 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv 274 (337)
|+.+..+... .++||+|++|++... ....++.+.+++++ |.++
T Consensus 117 da~~~l~~~~-~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 117 RPLDVMSRLA-NDSYQLVFGQVSPMD-----------------------------------LKALVDAAWPLLRRGGALV 160 (221)
T ss_dssp CHHHHGGGSC-TTCEEEEEECCCTTT-----------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred CHHHHHHHhc-CCCcCeEEEcCcHHH-----------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 9877643321 257999999976210 13467778888887 7777
Q ss_pred EEcCCC
Q 019692 275 YSTCSI 280 (337)
Q Consensus 275 YsTCS~ 280 (337)
+..+.+
T Consensus 161 ~dn~~~ 166 (221)
T 3dr5_A 161 LADALL 166 (221)
T ss_dssp ETTTTG
T ss_pred EeCCCC
Confidence 766655
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=127.61 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=110.6
Q ss_pred hhhhcCeEEEechh------hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 112 PLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 112 ~~~~~G~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
..++.|+-..|..+ +..+...+ ..++.+|||+|||+|+.+..++... ..++|+|+|+|+.+++.+++|++..
T Consensus 187 ~l~~rgyr~~~~~a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~ 264 (373)
T 3tm4_A 187 SLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAA 264 (373)
T ss_dssp CTTCCTTCCSCCTTCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred ccccCCcccccCCCCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 45566654444322 23333444 7889999999999999999998863 3358999999999999999999999
Q ss_pred CC-CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 019692 186 GA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA 264 (337)
Q Consensus 186 g~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A 264 (337)
|+ ++|+++++|+.+++... ++||+|++|||..- +. .....+..++..+++.+
T Consensus 265 gl~~~i~~~~~D~~~~~~~~---~~fD~Ii~npPyg~------r~------------------~~~~~~~~ly~~~~~~l 317 (373)
T 3tm4_A 265 GVLDKIKFIQGDATQLSQYV---DSVDFAISNLPYGL------KI------------------GKKSMIPDLYMKFFNEL 317 (373)
T ss_dssp TCGGGCEEEECCGGGGGGTC---SCEEEEEEECCCC------------------------------CCHHHHHHHHHHHH
T ss_pred CCCCceEEEECChhhCCccc---CCcCEEEECCCCCc------cc------------------CcchhHHHHHHHHHHHH
Confidence 98 57999999999886432 57999999999531 10 00112445677888888
Q ss_pred hCCCCCcEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 265 LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 265 ~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+.+ +|.++|.||+ ...+++.+. ..||+...
T Consensus 318 ~r~l-~g~~~~i~~~------~~~~~~~~~---~~G~~~~~ 348 (373)
T 3tm4_A 318 AKVL-EKRGVFITTE------KKAIEEAIA---ENGFEIIH 348 (373)
T ss_dssp HHHE-EEEEEEEESC------HHHHHHHHH---HTTEEEEE
T ss_pred HHHc-CCeEEEEECC------HHHHHHHHH---HcCCEEEE
Confidence 7766 6889999884 444555552 34677654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=127.39 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=85.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+|.+|||+|||+|..++. +. +..+|+++|+|+.+++.+++|++.+|+ ++++++++|+.++. .+||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEE
Confidence 5789999999999999988 66 357999999999999999999999998 57999999998775 4699999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
+|||..+. +++..+++++++ |.++|++|+..
T Consensus 264 ~dpP~~~~------------------------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 264 MNLPKFAH------------------------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ECCTTTGG------------------------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ECCcHhHH------------------------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 99996532 356677777765 89999999987
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-13 Score=122.64 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=79.4
Q ss_pred EEEechhhHHHHHHh---CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe
Q 019692 119 VFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH 194 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~ 194 (337)
++.+.....++..++ ...++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++|++++|+.+ |++++
T Consensus 102 lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~ 179 (284)
T 1nv8_A 102 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179 (284)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred eecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 334444444443333 2346789999999999999999988 56899999999999999999999999976 99999
Q ss_pred ccCCCCCCCCCCCCCc---cEEEECCCCCCccc
Q 019692 195 GDFLNLDPKDPAYSEV---RAILLDPSCSGSGT 224 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~f---D~IlvDpPCSg~G~ 224 (337)
+|+.+... ++| |+|++||||.+.+.
T Consensus 180 ~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 180 GEFLEPFK-----EKFASIEMILSNPPYVKSSA 207 (284)
T ss_dssp SSTTGGGG-----GGTTTCCEEEECCCCBCGGG
T ss_pred Ccchhhcc-----cccCCCCEEEEcCCCCCccc
Confidence 99987432 356 99999999998875
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=113.38 Aligned_cols=82 Identities=24% Similarity=0.204 Sum_probs=65.4
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+++|++|||+|||+|..+.+++...+ .++|+|+|+|+.+++.+.+.+++. .|+.++.+|+.......+..++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeE
Confidence 3467899999999999999999999875 689999999999998888777654 5789999998764211111257999
Q ss_pred EEECC
Q 019692 213 ILLDP 217 (337)
Q Consensus 213 IlvDp 217 (337)
|++|.
T Consensus 130 V~~~~ 134 (210)
T 1nt2_A 130 IYQDI 134 (210)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99983
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-13 Score=119.00 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=97.6
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEec
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHG 195 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~ 195 (337)
+...++.....++..++...++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++++.|+. +|+++.+
T Consensus 51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (232)
T 3ntv_A 51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG 129 (232)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 4445566667777777777788999999999999999999853 4689999999999999999999999985 7999999
Q ss_pred cCCCCCC-CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE
Q 019692 196 DFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 196 D~~~~~~-~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
|+.+..+ .. .++||+|++|+++.. +..+++.+.+++++ |.+
T Consensus 130 d~~~~~~~~~--~~~fD~V~~~~~~~~-----------------------------------~~~~l~~~~~~LkpgG~l 172 (232)
T 3ntv_A 130 NALEQFENVN--DKVYDMIFIDAAKAQ-----------------------------------SKKFFEIYTPLLKHQGLV 172 (232)
T ss_dssp CGGGCHHHHT--TSCEEEEEEETTSSS-----------------------------------HHHHHHHHGGGEEEEEEE
T ss_pred CHHHHHHhhc--cCCccEEEEcCcHHH-----------------------------------HHHHHHHHHHhcCCCeEE
Confidence 9987643 22 257999999976332 24578888898887 666
Q ss_pred EEE
Q 019692 274 VYS 276 (337)
Q Consensus 274 vYs 276 (337)
++.
T Consensus 173 v~d 175 (232)
T 3ntv_A 173 ITD 175 (232)
T ss_dssp EEE
T ss_pred EEe
Confidence 663
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=115.55 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++|++.+|+.+++++++|+.+..+.. ..+||+|++|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~--~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--CCCCCEEEEC
Confidence 6889999999999999987764 23589999999999999999999999988999999987743222 2579999999
Q ss_pred CCC
Q 019692 217 PSC 219 (337)
Q Consensus 217 pPC 219 (337)
||.
T Consensus 130 ~p~ 132 (202)
T 2fpo_A 130 PPF 132 (202)
T ss_dssp CSS
T ss_pred CCC
Confidence 993
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-14 Score=127.32 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=109.9
Q ss_pred eEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEecc
Q 019692 118 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 196 (337)
Q Consensus 118 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D 196 (337)
.+.++.....++..++...++.+|||+|||+|..|..+|..+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|
T Consensus 41 ~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 120 (242)
T 3r3h_A 41 NMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP 120 (242)
T ss_dssp GTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred CCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 34566777777777777677889999999999999999998866789999999999999999999999986 69999999
Q ss_pred CCCCCCCCC---CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cE
Q 019692 197 FLNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ER 272 (337)
Q Consensus 197 ~~~~~~~~~---~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~ 272 (337)
+.+..+... ..++||+|++|++... ....++.+.+++++ |.
T Consensus 121 a~~~l~~~~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~ 165 (242)
T 3r3h_A 121 ALDTLHSLLNEGGEHQFDFIFIDADKTN-----------------------------------YLNYYELALKLVTPKGL 165 (242)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEEESCGGG-----------------------------------HHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHhhccCCCCEeEEEEcCChHH-----------------------------------hHHHHHHHHHhcCCCeE
Confidence 876533210 0157999999987210 13467778888887 77
Q ss_pred EEEEcCCC-----CcccC---HHHHHHHhch-hcCCCcEEe
Q 019692 273 VVYSTCSI-----HQVEN---EDVIKSVLPI-AMSFGFQLA 304 (337)
Q Consensus 273 lvYsTCS~-----~~~EN---e~vv~~~l~~-~~~~~~~~~ 304 (337)
||+..+.+ .+..+ ...+..|.+. ..++.|+..
T Consensus 166 lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (242)
T 3r3h_A 166 IAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVS 206 (242)
T ss_dssp EEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEE
Confidence 77654432 23333 2335555532 246667653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-13 Score=114.60 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=89.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------C--C
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------P--A 206 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~--~ 206 (337)
+++|.+|||+|||||+++..+++. .++|+|+|+++.. ...+|+++++|+.+..... . .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 578999999999999999999886 5899999999742 3467999999998753110 0 0
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
.++||+|++|+++..+|.. ..+......++..+|+.|.++|++ |.+| |.+...++
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~---------------------~~d~~~~~~l~~~~l~~a~~~LkpGG~lv---~k~~~~~~ 144 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIP---------------------SRDHAVSYQIGQRVMEIAVRYLRNGGNVL---LKQFQGDM 144 (191)
T ss_dssp CSSEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEECSTH
T ss_pred CCcceEEecCCCcCCCCCc---------------------ccCHHHHHHHHHHHHHHHHHHccCCCEEE---EEEcCCCC
Confidence 0379999999998777642 222334556788999999998887 7776 44555666
Q ss_pred HHHHHHHhc
Q 019692 286 EDVIKSVLP 294 (337)
Q Consensus 286 e~vv~~~l~ 294 (337)
...+...++
T Consensus 145 ~~~~~~~l~ 153 (191)
T 3dou_A 145 TNDFIAIWR 153 (191)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 666666663
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=119.33 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=94.4
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH---hCCC-cEEEEeccCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAA-NIEVLHGDFLN 199 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~---~g~~-~v~~~~~D~~~ 199 (337)
..+.+++.++...++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++. +|+. +++++++|+.+
T Consensus 23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~ 101 (260)
T 2ozv_A 23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL 101 (260)
T ss_dssp CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence 357788888888889999999999999999999985 347999999999999999999998 8886 49999999988
Q ss_pred CCC----CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH--HHHHHHHHHHHHHhCCCCC-cE
Q 019692 200 LDP----KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN--KLSAFQKKALRHALSFPGV-ER 272 (337)
Q Consensus 200 ~~~----~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~l~~~Q~~lL~~A~~~~~~-G~ 272 (337)
+.. ......+||+|++|||+...+ -...++.. ..+. ........+++.+.+++++ |.
T Consensus 102 ~~~~~~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~---------------~~~a~~~~~~~~~~~l~~~~~~LkpgG~ 165 (260)
T 2ozv_A 102 RAKARVEAGLPDEHFHHVIMNPPYNDAG-DRRTPDAL---------------KAEAHAMTEGLFEDWIRTASAIMVSGGQ 165 (260)
T ss_dssp CHHHHHHTTCCTTCEEEEEECCCC-------------------------------------CCHHHHHHHHHHHEEEEEE
T ss_pred HhhhhhhhccCCCCcCEEEECCCCcCCC-CCCCcCHH---------------HHHHhhcCcCCHHHHHHHHHHHcCCCCE
Confidence 721 000125799999999987653 11111110 0000 0111246788999898887 66
Q ss_pred EEE
Q 019692 273 VVY 275 (337)
Q Consensus 273 lvY 275 (337)
++.
T Consensus 166 l~~ 168 (260)
T 2ozv_A 166 LSL 168 (260)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=117.45 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=95.4
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 198 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~ 198 (337)
.++.....+...++...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|+.
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 118 (210)
T 3c3p_A 39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL 118 (210)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence 455555555555555556789999999999999999998754689999999999999999999999885 4999999987
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+..+... + ||+|++|+++.. +..+++.+.+++++ |.+++.+
T Consensus 119 ~~~~~~~--~-fD~v~~~~~~~~-----------------------------------~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 119 GIAAGQR--D-IDILFMDCDVFN-----------------------------------GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp HHHTTCC--S-EEEEEEETTTSC-----------------------------------HHHHHHHHGGGEEEEEEEEEES
T ss_pred HHhccCC--C-CCEEEEcCChhh-----------------------------------hHHHHHHHHHhcCCCeEEEEEC
Confidence 6533222 5 999999965321 24678888888887 7888766
Q ss_pred CCC
Q 019692 278 CSI 280 (337)
Q Consensus 278 CS~ 280 (337)
+.+
T Consensus 161 ~~~ 163 (210)
T 3c3p_A 161 ALR 163 (210)
T ss_dssp SSS
T ss_pred ccc
Confidence 544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=119.84 Aligned_cols=127 Identities=15% Similarity=0.088 Sum_probs=98.2
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 198 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~ 198 (337)
.++.....++..++...++.+|||+|||+|+.+..++..+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|+.
T Consensus 53 ~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~ 132 (237)
T 3c3y_A 53 STSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM 132 (237)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 345555666666666667889999999999999999998866789999999999999999999999986 4999999987
Q ss_pred CCCCCC--C--CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE
Q 019692 199 NLDPKD--P--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 199 ~~~~~~--~--~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
+..+.. . ..++||+|++|+++.. +...++.+.+++++ |.+
T Consensus 133 ~~l~~l~~~~~~~~~fD~I~~d~~~~~-----------------------------------~~~~l~~~~~~L~pGG~l 177 (237)
T 3c3y_A 133 LALDNLLQGQESEGSYDFGFVDADKPN-----------------------------------YIKYHERLMKLVKVGGIV 177 (237)
T ss_dssp HHHHHHHHSTTCTTCEEEEEECSCGGG-----------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhccCCCCCcCEEEECCchHH-----------------------------------HHHHHHHHHHhcCCCeEE
Confidence 642211 0 0257999999976321 24567777787776 888
Q ss_pred EEEcCCCC
Q 019692 274 VYSTCSIH 281 (337)
Q Consensus 274 vYsTCS~~ 281 (337)
++.+|.+.
T Consensus 178 v~d~~~~~ 185 (237)
T 3c3y_A 178 AYDNTLWG 185 (237)
T ss_dssp EEECTTGG
T ss_pred EEecCCcC
Confidence 88887543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=117.21 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=80.4
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEeccC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-G--AANIEVLHGDF 197 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g--~~~v~~~~~D~ 197 (337)
+.......+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.. | ..+++++++|+
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 34444556667788899999999999999999999998766789999999999999999999988 7 67899999999
Q ss_pred CCCCCCCCCCCCccEEEECCC
Q 019692 198 LNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpP 218 (337)
.+.+.. ..+||+|++|+|
T Consensus 163 ~~~~~~---~~~~D~v~~~~~ 180 (280)
T 1i9g_A 163 ADSELP---DGSVDRAVLDML 180 (280)
T ss_dssp GGCCCC---TTCEEEEEEESS
T ss_pred HhcCCC---CCceeEEEECCc
Confidence 876432 257999999877
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-13 Score=123.46 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=78.8
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
|..++.....++..+.+.++++|||+|||+|..|..++.. .++|+|+|+++.+++.++++++..|..+++++++|+.
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~ 100 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI 100 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence 4556666777778888889999999999999999998875 3699999999999999999999888888999999998
Q ss_pred CCCCCCCCCCCccEEEECCCCCCc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.++. .+||.|++|+|+..+
T Consensus 101 ~~~~-----~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 101 KTVF-----PKFDVCTANIPYKIS 119 (299)
T ss_dssp SSCC-----CCCSEEEEECCGGGH
T ss_pred hCCc-----ccCCEEEEcCCcccc
Confidence 7752 469999999997643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=110.44 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=83.9
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
.|.+..+......+...+.++++.+|||+|||+|..+..++.. .++|+++|+++.+++.++++++.+|+.+++++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 132 (210)
T 3lbf_A 56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG 132 (210)
T ss_dssp TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence 3556667766777778888999999999999999999999997 4799999999999999999999999989999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCC
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|+.+.... ..+||+|+++..
T Consensus 133 d~~~~~~~---~~~~D~i~~~~~ 152 (210)
T 3lbf_A 133 DGWQGWQA---RAPFDAIIVTAA 152 (210)
T ss_dssp CGGGCCGG---GCCEEEEEESSB
T ss_pred CcccCCcc---CCCccEEEEccc
Confidence 99876543 257999999865
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=113.23 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=96.2
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++++|+.+|+++++|+.+++......++||+|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 34578899999999999999999863 45799999999999999999999999988999999998765321012579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
+++.. . + ...+++.+.+++++ |.+++..+....+|-+...+ .
T Consensus 146 ~~~~~-------~---~--------------------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~-~ 188 (240)
T 1xdz_A 146 TARAV-------A---R--------------------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKK-A 188 (240)
T ss_dssp EEECC-------S---C--------------------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHH-H
T ss_pred EEecc-------C---C--------------------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHH-H
Confidence 98651 0 0 14788888888887 78887777665544433333 2
Q ss_pred hchhcCCCcEEe
Q 019692 293 LPIAMSFGFQLA 304 (337)
Q Consensus 293 l~~~~~~~~~~~ 304 (337)
+ ...||++.
T Consensus 189 l---~~~g~~~~ 197 (240)
T 1xdz_A 189 I---TTLGGELE 197 (240)
T ss_dssp H---HHTTEEEE
T ss_pred H---HHcCCeEe
Confidence 3 23466654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-13 Score=119.73 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+|. +++++++|+.+.... ....++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEE
Confidence 678999999999999999999984 346999999999999999999999888 799999998763221 00015799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+|||+...+.+..-+.... .+... . ....-..-.+....+++.+.+++++ |.+++.++.. .+...+..++
T Consensus 107 ~npp~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l 177 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVR-DYEPR--L---ALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---NQADEVARLF 177 (215)
T ss_dssp ECCCCCC------------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---SCHHHHHHHT
T ss_pred ECCCCCCCccccccChhhh-ccCcc--c---cccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---ccHHHHHHHH
Confidence 9999977665422110000 00000 0 0000000112236788888888887 7746655542 3445556666
Q ss_pred c
Q 019692 294 P 294 (337)
Q Consensus 294 ~ 294 (337)
.
T Consensus 178 ~ 178 (215)
T 4dzr_A 178 A 178 (215)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=108.78 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=105.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+.+.++.+|||+|||+|..+..++...++..+|+++|+++.+++.++++++..++.+++++.+|+.+++...
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-- 104 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD-- 104 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS--
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC--
Confidence 344555678889999999999999999999987566799999999999999999999999989999999998876432
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc--
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV-- 283 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~-- 283 (337)
++||+|++... +..-++ ...+|+.+.+++++ |.++.+++.....
T Consensus 105 -~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 151 (219)
T 3dh0_A 105 -NTVDFIFMAFT------FHELSE--------------------------PLKFLEELKRVAKPFAYLAIIDWKKEERDK 151 (219)
T ss_dssp -SCEEEEEEESC------GGGCSS--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSS
T ss_pred -CCeeEEEeehh------hhhcCC--------------------------HHHHHHHHHHHhCCCeEEEEEEeccccccc
Confidence 57999997532 211000 24678888888886 7888876554322
Q ss_pred -------cCHHHHHHHhchhcCCCcEEec
Q 019692 284 -------ENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 284 -------ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
-+.+.+...++ ..||+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~l~---~~Gf~~~~ 177 (219)
T 3dh0_A 152 GPPPEEVYSEWEVGLILE---DAGIRVGR 177 (219)
T ss_dssp SCCGGGSCCHHHHHHHHH---HTTCEEEE
T ss_pred CCchhcccCHHHHHHHHH---HCCCEEEE
Confidence 23556666664 34677653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-13 Score=118.15 Aligned_cols=94 Identities=21% Similarity=0.337 Sum_probs=79.3
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 203 (337)
...+...+....++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.++++++.+|+ .+++++++|+.+++..
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 142 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASF 142 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhccc
Confidence 4444445544557999999999999999999985 37999999999999999999999998 5799999999887622
Q ss_pred CCCCCCccEEEECCCCCCcccc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTA 225 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~ 225 (337)
.+||+|++||||.+.+..
T Consensus 143 ----~~~D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 143 ----LKADVVFLSPPWGGPDYA 160 (241)
T ss_dssp ----CCCSEEEECCCCSSGGGG
T ss_pred ----CCCCEEEECCCcCCcchh
Confidence 579999999999987653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-12 Score=105.72 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=94.5
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 205 (337)
..+...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+|+. ++ ++.+|+.+..+..
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~- 91 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV- 91 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-
Confidence 444556678899999999999999999998875 4579999999999999999999999987 79 8888875432221
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
.++||+|+++.+... ..+++.+.+++++ |.+++++++. +
T Consensus 92 -~~~~D~i~~~~~~~~------------------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~ 131 (178)
T 3hm2_A 92 -PDNPDVIFIGGGLTA------------------------------------PGVFAAAWKRLPVGGRLVANAVTV---E 131 (178)
T ss_dssp -CSCCSEEEECC-TTC------------------------------------TTHHHHHHHTCCTTCEEEEEECSH---H
T ss_pred -CCCCCEEEECCcccH------------------------------------HHHHHHHHHhcCCCCEEEEEeecc---c
Confidence 157999997655211 2568888888886 8888877764 3
Q ss_pred CHHHHHHHhc
Q 019692 285 NEDVIKSVLP 294 (337)
Q Consensus 285 Ne~vv~~~l~ 294 (337)
+...+..+++
T Consensus 132 ~~~~~~~~~~ 141 (178)
T 3hm2_A 132 SEQMLWALRK 141 (178)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4445555553
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=105.40 Aligned_cols=119 Identities=15% Similarity=0.197 Sum_probs=94.6
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLD 201 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~ 201 (337)
..+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..++.+ ++++.+|+.+..
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 45566677778888999999999999999988876 4799999999999999999999999987 999999988754
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
. .++||+|++++|... .. .....+++.+.+++++ |.++.++++.
T Consensus 116 ~----~~~~D~v~~~~~~~~------------------------~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 K----DRKYNKIITNPPIRA------------------------GK-------EVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp T----TSCEEEEEECCCSTT------------------------CH-------HHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred c----cCCceEEEECCCccc------------------------ch-------hHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 3 257999999988321 01 1134678888887776 7777766654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-13 Score=117.36 Aligned_cols=126 Identities=10% Similarity=0.131 Sum_probs=96.3
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
..++.....++..++...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.++++++..|+.+ |+++++|+
T Consensus 46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 125 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA 125 (225)
T ss_dssp GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence 34555566666666666678999999999999999999987657899999999999999999999999875 99999998
Q ss_pred CCCCCCCC---CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEE
Q 019692 198 LNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERV 273 (337)
Q Consensus 198 ~~~~~~~~---~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~l 273 (337)
.+..+... ..++||+|++|++... +..+++.+.+++++ |.+
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~~~~-----------------------------------~~~~l~~~~~~L~pgG~l 170 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDADKAN-----------------------------------TDLYYEESLKLLREGGLI 170 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSCGGG-----------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHhhhccCCCCccEEEECCCHHH-----------------------------------HHHHHHHHHHhcCCCcEE
Confidence 65422110 0157999999987210 13567788888887 677
Q ss_pred EEEcCC
Q 019692 274 VYSTCS 279 (337)
Q Consensus 274 vYsTCS 279 (337)
+...+.
T Consensus 171 v~~~~~ 176 (225)
T 3tr6_A 171 AVDNVL 176 (225)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 665444
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=106.78 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=86.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++... +...|+|+|+++.+++.++++++..|+.|+.++++|+.+++...+ .++||.|++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~D~i~~ 117 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-DGEIDRLYL 117 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-TTCCSEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-CCCCCEEEE
Confidence 468899999999999999999985 457999999999999999999999999899999999988652111 257999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++|..-.. .++ .+.+ ..+..++..+.+++++ |.++.+|
T Consensus 118 ~~~~~~~~--~~~-----------------~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 118 NFSDPWPK--KRH-----------------EKRR-----LTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp ESCCCCCS--GGG-----------------GGGS-----TTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ECCCCccc--cch-----------------hhhc-----cCCHHHHHHHHHHcCCCcEEEEEe
Confidence 98732110 000 0000 0146788888887887 6666544
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-12 Score=119.93 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=98.7
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLN 199 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~---~v~~~~~D~~~ 199 (337)
|..+.++...+...++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++.+|+. +++++.+|+.+
T Consensus 208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 286 (375)
T ss_dssp CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence 4456677777887888999999999999999999974 4579999999999999999999999875 58999999887
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..+ .++||+|++|||......+.+ ....++++.+.+++++ |.++.+.-
T Consensus 287 ~~~----~~~fD~Ii~nppfh~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 287 GVE----PFRFNAVLCNPPFHQQHALTD---------------------------NVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp TCC----TTCEEEEEECCCC-------C---------------------------CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC----CCCeeEEEECCCcccCcccCH---------------------------HHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 432 257999999999643111100 0123678898888887 66655544
Q ss_pred CCCcccCHHHHHHHh
Q 019692 279 SIHQVENEDVIKSVL 293 (337)
Q Consensus 279 S~~~~ENe~vv~~~l 293 (337)
+..+. +..+++..
T Consensus 336 ~~~~~--~~~l~~~f 348 (375)
T 4dcm_A 336 RHLDY--FHKLKKIF 348 (375)
T ss_dssp TTSCH--HHHHHHHH
T ss_pred CCcCH--HHHHHHhc
Confidence 43333 33444443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=116.95 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=95.8
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~ 197 (337)
..++.....++..++...++.+|||+|||+|+.+..++..+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|+
T Consensus 61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda 140 (247)
T 1sui_A 61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 140 (247)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence 4456666667666666667889999999999999999998865689999999999999999999999984 699999998
Q ss_pred CCCCCCCC----CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cE
Q 019692 198 LNLDPKDP----AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ER 272 (337)
Q Consensus 198 ~~~~~~~~----~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~ 272 (337)
.+..+... ..++||+|++|+++.. ....++.+.+++++ |.
T Consensus 141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~-----------------------------------~~~~l~~~~~~LkpGG~ 185 (247)
T 1sui_A 141 LPVLDEMIKDEKNHGSYDFIFVDADKDN-----------------------------------YLNYHKRLIDLVKVGGV 185 (247)
T ss_dssp HHHHHHHHHSGGGTTCBSEEEECSCSTT-----------------------------------HHHHHHHHHHHBCTTCC
T ss_pred HHHHHHHHhccCCCCCEEEEEEcCchHH-----------------------------------HHHHHHHHHHhCCCCeE
Confidence 76422110 0157999999976321 13567777787776 78
Q ss_pred EEEEc
Q 019692 273 VVYST 277 (337)
Q Consensus 273 lvYsT 277 (337)
+++..
T Consensus 186 lv~d~ 190 (247)
T 1sui_A 186 IGYDN 190 (247)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=120.85 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=77.6
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--C
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--P 205 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~ 205 (337)
.+...+.+++|++|||+|||+|+.+..+++..+ .++|+|+|+|+.+++.++++++.+| .+++++++|+.+++... .
T Consensus 17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhc
Confidence 345667888999999999999999999999864 5899999999999999999999888 78999999998764210 0
Q ss_pred CCCCccEEEECCCCCC
Q 019692 206 AYSEVRAILLDPSCSG 221 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg 221 (337)
...+||.|++|+|||.
T Consensus 95 g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 95 GIEKVDGILMDLGVST 110 (301)
T ss_dssp TCSCEEEEEEECSCCH
T ss_pred CCCCCCEEEEcCccch
Confidence 1247999999999984
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=108.40 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=95.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.+|++|||+|||+|..++.++.. ++.++|+|+|+++.+++.+++|++++|+.+ |+++.+|..+..+.. .+||.|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~---~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET---DQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC---cCCCEE
Confidence 567899999999999999999886 445789999999999999999999999975 999999986543221 259999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
++ .|.|- .+=.+||..+...+++ |.+|.+.- .+.+.+...
T Consensus 89 vi----aG~Gg------------------------------~~i~~Il~~~~~~L~~~~~lVlq~~-----~~~~~vr~~ 129 (225)
T 3kr9_A 89 TI----AGMGG------------------------------RLIARILEEGLGKLANVERLILQPN-----NREDDLRIW 129 (225)
T ss_dssp EE----EEECH------------------------------HHHHHHHHHTGGGCTTCCEEEEEES-----SCHHHHHHH
T ss_pred EE----cCCCh------------------------------HHHHHHHHHHHHHhCCCCEEEEECC-----CCHHHHHHH
Confidence 86 24331 1124789998887776 88888655 377778777
Q ss_pred hchhcCCCcEEe
Q 019692 293 LPIAMSFGFQLA 304 (337)
Q Consensus 293 l~~~~~~~~~~~ 304 (337)
|. ..||.+.
T Consensus 130 L~---~~Gf~i~ 138 (225)
T 3kr9_A 130 LQ---DHGFQIV 138 (225)
T ss_dssp HH---HTTEEEE
T ss_pred HH---HCCCEEE
Confidence 74 3466664
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=105.06 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=92.6
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
..++.-...+...+...++.+|||+|||+|..+..++. +..+|+++|+++.+++.++++++.+|+.+++++++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc
Confidence 34444455566667888899999999999999998887 457999999999999999999999999889999999876
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
..+. .+||+|+++++ . . ...++..+.++ ++|.+++++|+
T Consensus 95 ~~~~----~~~D~i~~~~~----~----~----------------------------~~~~l~~~~~~-~gG~l~~~~~~ 133 (183)
T 2yxd_A 95 VLDK----LEFNKAFIGGT----K----N----------------------------IEKIIEILDKK-KINHIVANTIV 133 (183)
T ss_dssp HGGG----CCCSEEEECSC----S----C----------------------------HHHHHHHHHHT-TCCEEEEEESC
T ss_pred cccC----CCCcEEEECCc----c----c----------------------------HHHHHHHHhhC-CCCEEEEEecc
Confidence 3221 47999999987 1 0 13566676667 66999998875
Q ss_pred C
Q 019692 280 I 280 (337)
Q Consensus 280 ~ 280 (337)
.
T Consensus 134 ~ 134 (183)
T 2yxd_A 134 L 134 (183)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=107.83 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=70.8
Q ss_pred HHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019692 130 AAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 130 ~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 207 (337)
...+. ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+. +++++.+|+.+..+.. .
T Consensus 23 ~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~ 98 (177)
T 2esr_A 23 FNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--T 98 (177)
T ss_dssp HHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--C
T ss_pred HHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh--c
Confidence 33444 567899999999999999998876 4479999999999999999999999885 6999999987742221 1
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
.+||+|++|||.
T Consensus 99 ~~fD~i~~~~~~ 110 (177)
T 2esr_A 99 GRFDLVFLDPPY 110 (177)
T ss_dssp SCEEEEEECCSS
T ss_pred CCCCEEEECCCC
Confidence 469999999995
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=114.11 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=91.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..++.++... +..+|+++|+++.+++.++++++++|+.||+++++|+.++........+||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 3578999999999999999999875 558999999999999999999999999899999999988764311125799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHH
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENED 287 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~ 287 (337)
+..- .. ...+++.+.+++++ |.+++..+....+|-+.
T Consensus 157 s~a~-------~~-----------------------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~ 194 (249)
T 3g89_A 157 ARAV-------AP-----------------------------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAP 194 (249)
T ss_dssp EESS-------CC-----------------------------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTT
T ss_pred ECCc-------CC-----------------------------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHH
Confidence 7421 00 13678888888887 88888777755544333
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=113.46 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=84.7
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.++.+++|++|||+|||+|+.|..++... .+++|+++|+++.+++.+++++++.|+.+|+++++|+.+++ + .+|
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d---~~F 189 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G---LEF 189 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G---CCC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C---CCc
Confidence 35788999999999999998775544332 25799999999999999999999999988999999998875 2 579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
|+|+++.- . ++ ..++++...+.+++ |+||..+
T Consensus 190 DvV~~~a~------~---~d--------------------------~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAAL------A---EP--------------------------KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SEEEECTT------C---SC--------------------------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCC------c---cC--------------------------HHHHHHHHHHHcCCCcEEEEEc
Confidence 99998542 1 11 24778888887776 8888764
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=111.96 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=90.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.++++++..|+.+ ++++++|+.+++... ++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN---EELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT---TCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC---CCEEEE
Confidence 578999999999999999999887 45699999999999999999999999854 999999998876432 679999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
++....... + ...+|+.+.+++++ |.++.+++++.....
T Consensus 119 ~~~~~~~~~-------~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 158 (267)
T 3kkz_A 119 WSEGAIYNI-------G--------------------------FERGLNEWRKYLKKGGYLAVSECSWFTDER 158 (267)
T ss_dssp EESSCGGGT-------C--------------------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCC
T ss_pred EEcCCceec-------C--------------------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCC
Confidence 976542211 0 14678899898887 888888876554433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=110.59 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=96.5
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
-|++++......+++.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..|+.++.++.+|+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 81 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 81 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence 477888999999999999999999999999999888763 59999999999999999999999998999999999887
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+..+ ++||+|++.-. +..-+| ...+|..+.+++++ |.++.++..
T Consensus 82 ~~~~---~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 82 PFPD---DSFDIITCRYA------AHHFSD--------------------------VRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp CSCT---TCEEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCC---CcEEEEEECCc------hhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEEcC
Confidence 6432 57999997522 111000 14678888888887 777765543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=117.68 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=94.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.+++|++.++++ ++++.+|+.+.... .++||+|++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~---~~~fD~Ii~ 304 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE---EARFDIIVT 304 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT---TCCEEEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc---CCCeEEEEE
Confidence 47889999999999999999886 369999999999999999999999876 89999999887643 257999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
|||+...+... . .....++..+.+++++ |.++.+++...+. +..++...
T Consensus 305 npp~~~~~~~~--------------------~-------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~--~~~l~~~f 354 (381)
T 3dmg_A 305 NPPFHVGGAVI--------------------L-------DVAQAFVNVAAARLRPGGVFFLVSNPFLKY--EPLLEEKF 354 (381)
T ss_dssp CCCCCTTCSSC--------------------C-------HHHHHHHHHHHHHEEEEEEEEEEECTTSCH--HHHHHHHH
T ss_pred CCchhhccccc--------------------H-------HHHHHHHHHHHHhcCcCcEEEEEEcCCCCh--HHHHHHhh
Confidence 99976432110 0 1235788888888887 7777777666543 34444433
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=108.78 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=90.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 205 (337)
..+...+.+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++++..|+. +|.++++|+.+++. .
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~- 101 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N- 101 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S-
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C-
Confidence 344555678899999999999999999999886 368999999999999999999999985 79999999988765 2
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++- +++..-+| ...+|+.+.+++++ |.++.++..
T Consensus 102 --~~fD~V~~~------~~~~~~~~--------------------------~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 102 --EKCDVAACV------GATWIAGG--------------------------FAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp --SCEEEEEEE------SCGGGTSS--------------------------SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred --CCCCEEEEC------CChHhcCC--------------------------HHHHHHHHHHHcCCCeEEEEecCc
Confidence 579999972 12211111 15788999999887 777776543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=106.77 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=98.0
Q ss_pred hHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019692 126 SSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 126 s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 203 (337)
...+...+. +.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++..++.+++++++|+.+..
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 122 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-- 122 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--
Confidence 334444444 578999999999999999998874 45699999999999999999999999888999999997753
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ 282 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~ 282 (337)
.++||+|+++++.. ....+++.+.+++++ |.++.++..
T Consensus 123 ---~~~fD~i~~~~~~~-----------------------------------~~~~~l~~~~~~L~~gG~l~~~~~~--- 161 (205)
T 3grz_A 123 ---DGKFDLIVANILAE-----------------------------------ILLDLIPQLDSHLNEDGQVIFSGID--- 161 (205)
T ss_dssp ---CSCEEEEEEESCHH-----------------------------------HHHHHGGGSGGGEEEEEEEEEEEEE---
T ss_pred ---CCCceEEEECCcHH-----------------------------------HHHHHHHHHHHhcCCCCEEEEEecC---
Confidence 25799999987610 025678888888887 777775433
Q ss_pred ccCHHHHHHHhchhcCCCcEEec
Q 019692 283 VENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 283 ~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
.+....+...++ ..||+...
T Consensus 162 ~~~~~~~~~~~~---~~Gf~~~~ 181 (205)
T 3grz_A 162 YLQLPKIEQALA---ENSFQIDL 181 (205)
T ss_dssp GGGHHHHHHHHH---HTTEEEEE
T ss_pred cccHHHHHHHHH---HcCCceEE
Confidence 223444555553 34677654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=111.22 Aligned_cols=84 Identities=25% Similarity=0.259 Sum_probs=69.3
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+.+++++. .+++++.+|+.+.........+||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEE
Confidence 34678999999999999999999998766689999999999999999888876 6799999999874211001257999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|++|+|
T Consensus 151 V~~~~~ 156 (233)
T 2ipx_A 151 IFADVA 156 (233)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999988
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=109.31 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.++.+|||+|||+|..+..+++... ++|+++|+++.+++.++++++..|+.+ ++++++|+.+++... ++||+
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~ 117 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN---EELDL 117 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT---TCEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC---CCEEE
Confidence 567889999999999999999999852 499999999999999999999999876 999999998876432 67999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV 283 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ 283 (337)
|++....... + ...+|+.+.+++++ |.++.++++....
T Consensus 118 v~~~~~l~~~-------~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 156 (257)
T 3f4k_A 118 IWSEGAIYNI-------G--------------------------FERGMNEWSKYLKKGGFIAVSEASWFTS 156 (257)
T ss_dssp EEEESCSCCC-------C--------------------------HHHHHHHHHTTEEEEEEEEEEEEEESSS
T ss_pred EEecChHhhc-------C--------------------------HHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence 9976331110 0 14678999998887 8888887664443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=107.42 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=96.5
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
-+.+|++|+|+|||+|..++.++.. ++..+|+|+|+++.+++.+++|++++|+.+ |+++.+|..+..... .+||.
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~---~~~D~ 93 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA---DNIDT 93 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc---cccCE
Confidence 3567899999999999999999886 445689999999999999999999999975 999999988765431 36999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
|++ .|.|. .+=.+||..+...+++ |.+|-+.- .+.+.|.+
T Consensus 94 Ivi----aGmGg------------------------------~lI~~IL~~~~~~l~~~~~lIlqp~-----~~~~~lr~ 134 (230)
T 3lec_A 94 ITI----CGMGG------------------------------RLIADILNNDIDKLQHVKTLVLQPN-----NREDDLRK 134 (230)
T ss_dssp EEE----EEECH------------------------------HHHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHH
T ss_pred EEE----eCCch------------------------------HHHHHHHHHHHHHhCcCCEEEEECC-----CChHHHHH
Confidence 886 34331 1124688888877765 88887653 25777877
Q ss_pred HhchhcCCCcEEec
Q 019692 292 VLPIAMSFGFQLAT 305 (337)
Q Consensus 292 ~l~~~~~~~~~~~~ 305 (337)
.|. ..||.+..
T Consensus 135 ~L~---~~Gf~i~~ 145 (230)
T 3lec_A 135 WLA---ANDFEIVA 145 (230)
T ss_dssp HHH---HTTEEEEE
T ss_pred HHH---HCCCEEEE
Confidence 774 34666643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=110.76 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=77.3
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
++.|.+.....|......+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..|+.++
T Consensus 11 ~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v 87 (260)
T 1vl5_A 11 HHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQV 87 (260)
T ss_dssp ------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred ceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCce
Confidence 4667777788888888888888888899999999999999999888763 5999999999999999999999998899
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 191 EVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 191 ~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.++.+|+.+++..+ ++||+|++.
T Consensus 88 ~~~~~d~~~l~~~~---~~fD~V~~~ 110 (260)
T 1vl5_A 88 EYVQGDAEQMPFTD---ERFHIVTCR 110 (260)
T ss_dssp EEEECCC-CCCSCT---TCEEEEEEE
T ss_pred EEEEecHHhCCCCC---CCEEEEEEh
Confidence 99999998876432 579999964
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=114.36 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=104.5
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~ 199 (337)
++.....++..++...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.+++++++.|+. +|+++.+|+.+
T Consensus 56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34444455555555557889999999999999999998765689999999999999999999999985 49999999754
Q ss_pred CCCCC---CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 200 LDPKD---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 200 ~~~~~---~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
..+.. ...++||+|++|++.. + ....++.+.+++++ |.+++
T Consensus 136 ~l~~l~~~~~~~~fD~V~~d~~~~---------~--------------------------~~~~l~~~~~~LkpgG~lv~ 180 (232)
T 3cbg_A 136 TLEQLTQGKPLPEFDLIFIDADKR---------N--------------------------YPRYYEIGLNLLRRGGLMVI 180 (232)
T ss_dssp HHHHHHTSSSCCCEEEEEECSCGG---------G--------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHhcCCCCCcCEEEECCCHH---------H--------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 32110 0015799999997621 0 13567888888887 78888
Q ss_pred EcCCCC--------cccCHHHHHHHhch-hcCCCcEE
Q 019692 276 STCSIH--------QVENEDVIKSVLPI-AMSFGFQL 303 (337)
Q Consensus 276 sTCS~~--------~~ENe~vv~~~l~~-~~~~~~~~ 303 (337)
..+.+. ..+....+..+.+. ..++.+..
T Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (232)
T 3cbg_A 181 DNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRI 217 (232)
T ss_dssp ECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEE
T ss_pred eCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEE
Confidence 777654 22334455566542 23455544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=105.95 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=85.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..+|... +...|+|+|+++.+++.+++++++.|+.||.++++|+.+++...+ .+.||.|++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~-~~~~d~v~~ 114 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-PGEVKRVYL 114 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-TTSCCEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-cCCcCEEEE
Confidence 467899999999999999999885 457999999999999999999999999999999999987541111 256999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
..|+.-. +.. +. . .++ .+..+|+.+.+++++ |.++++|
T Consensus 115 ~~~~p~~----~~~------~~---------~---~rl--~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWP----KKR------HE---------K---RRL--TYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ESCCCCC----SGG------GG---------G---GST--TSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ECCCCCc----Ccc------cc---------c---ccc--CcHHHHHHHHHHcCCCCEEEEEe
Confidence 7653210 000 00 0 000 145778888887777 7777665
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=109.03 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=68.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Il 214 (337)
.++.+|||+|||+|..+..+|... +...|+|+|+++.+++.+++++++.|+.||.++.+|+.++.+. .+ .++||.|+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~-~~~~d~v~ 110 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP-DNSLRMVQ 110 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC-TTCEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC-CCChheEE
Confidence 367899999999999999999874 4578999999999999999999999999999999998875211 11 25799999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
+.-|
T Consensus 111 ~~~~ 114 (218)
T 3dxy_A 111 LFFP 114 (218)
T ss_dssp EESC
T ss_pred EeCC
Confidence 9733
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=104.91 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=67.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC-CCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD-PAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~-~~~~~fD~ 212 (337)
..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.+++ ++++++++|+.+..... ....+||+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 457899999999999999988773 457999999999999999999999997 47999999987743210 00157999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|++|||
T Consensus 120 i~~~~~ 125 (187)
T 2fhp_A 120 VLLDPP 125 (187)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999999
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=107.88 Aligned_cols=82 Identities=26% Similarity=0.314 Sum_probs=68.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++++|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.. .+++++++|+.+.........+||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 678999999999999999999998766689999999999999999998765 679999999987421111124799999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
+|+|
T Consensus 149 ~~~~ 152 (227)
T 1g8a_A 149 EDVA 152 (227)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9987
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=118.41 Aligned_cols=158 Identities=10% Similarity=0.053 Sum_probs=105.7
Q ss_pred CeEEEechhhHHHHHHh----CCCCCCeEEeecCCchhHHHHHHHHcCCC----CEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 117 GCVFLQGKASSMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKGK----GKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l----~~~~g~~VLDl~aG~G~kt~~la~~~~~~----g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
|.++-.+....++..++ .+.++.+|||+|||+|+.+..++..+... ..|+|+|+++.+++.++.|+...|+
T Consensus 106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~- 184 (344)
T 2f8l_A 106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ- 184 (344)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-
Confidence 55554444444444333 56678899999999999999999887432 6899999999999999999999888
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
++.++++|+..... ..+||+|+.|||++. +.. .+. ........ .......+..++.++++++
T Consensus 185 ~~~i~~~D~l~~~~----~~~fD~Ii~NPPfg~---~~~-~~~-~~~~~~~~---------~~g~~~~~~~~l~~~~~~L 246 (344)
T 2f8l_A 185 KMTLLHQDGLANLL----VDPVDVVISDLPVGY---YPD-DEN-AKTFELCR---------EEGHSFAHFLFIEQGMRYT 246 (344)
T ss_dssp CCEEEESCTTSCCC----CCCEEEEEEECCCSE---ESC-HHH-HTTSTTCC---------SSSCEEHHHHHHHHHHHTE
T ss_pred CceEEECCCCCccc----cCCccEEEECCCCCC---cCc-hhh-hhhccccC---------CCCcchHHHHHHHHHHHHh
Confidence 68899999876432 257999999999732 211 000 00000000 0011234567899999988
Q ss_pred CC-cEEEEEc-CCCCcccCHHHHHHHh
Q 019692 269 GV-ERVVYST-CSIHQVENEDVIKSVL 293 (337)
Q Consensus 269 ~~-G~lvYsT-CS~~~~ENe~vv~~~l 293 (337)
++ |.+++.+ .++...+....+.+.|
T Consensus 247 k~gG~~~~v~p~~~~~~~~~~~ir~~l 273 (344)
T 2f8l_A 247 KPGGYLFFLVPDAMFGTSDFAKVDKFI 273 (344)
T ss_dssp EEEEEEEEEEEGGGGGSTTHHHHHHHH
T ss_pred CCCCEEEEEECchhcCCchHHHHHHHH
Confidence 86 7777765 3444444555665555
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.3e-11 Score=107.64 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=95.1
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
-+.+|++|||+|||+|..++.++.. ++..+|+|+|+++.+++.+++|++++|+.+ |++..+|..+..... .+||.
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~---~~~D~ 93 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK---DAIDT 93 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG---GCCCE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc---ccccE
Confidence 3568899999999999999999886 345689999999999999999999999976 999999988765321 25999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
|++ .|.|. ++=.+||..+...+++ +.+|-+.- .+.+.+.+
T Consensus 94 Ivi----agmGg------------------------------~lI~~IL~~~~~~L~~~~~lIlq~~-----~~~~~lr~ 134 (244)
T 3gnl_A 94 IVI----AGMGG------------------------------TLIRTILEEGAAKLAGVTKLILQPN-----IAAWQLRE 134 (244)
T ss_dssp EEE----EEECH------------------------------HHHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHH
T ss_pred EEE----eCCch------------------------------HHHHHHHHHHHHHhCCCCEEEEEcC-----CChHHHHH
Confidence 987 34331 1124688888887765 78887553 36778877
Q ss_pred HhchhcCCCcEE
Q 019692 292 VLPIAMSFGFQL 303 (337)
Q Consensus 292 ~l~~~~~~~~~~ 303 (337)
.|.. .||.+
T Consensus 135 ~L~~---~Gf~i 143 (244)
T 3gnl_A 135 WSEQ---NNWLI 143 (244)
T ss_dssp HHHH---HTEEE
T ss_pred HHHH---CCCEE
Confidence 7742 35655
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=111.74 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=91.2
Q ss_pred HHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019692 127 SMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 204 (337)
Q Consensus 127 ~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 204 (337)
..+...+. +.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. +++++.+|+.+++...
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34455566 7889999999999999999999875 368999999999999999999999986 6999999998876332
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++||+|++. +++.. . . +..+|+.+.+++++ |.+++++...
T Consensus 184 ---~~fD~V~~~------~~l~~-~----------------~----------~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 184 ---GAVTASWNN------ESTMY-V----------------D----------LHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp ---TCEEEEEEE------SCGGG-S----------------C----------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---CCEeEEEEC------Cchhh-C----------------C----------HHHHHHHHHHHcCCCcEEEEEEccc
Confidence 579999963 12210 0 0 46788888888887 8888776443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.4e-12 Score=116.17 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=91.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g--~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++... + ..+++++.+|+....... .++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCceE
Confidence 46899999999999999998763 4579999999999999999998652 2 357999999987643222 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC--CCcccCHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS--IHQVENEDVI 289 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS--~~~~ENe~vv 289 (337)
|++|+|+.+.|.... ..+.++++.+.+++++ |.+++.+|+ +..++...++
T Consensus 167 Ii~d~~~~~~~~~~~---------------------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 219 (296)
T 1inl_A 167 IIIDSTDPTAGQGGH---------------------------LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAY 219 (296)
T ss_dssp EEEEC-------------------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHH
T ss_pred EEEcCCCcccCchhh---------------------------hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHH
Confidence 999999753332100 0135778888888876 899999988 4566677777
Q ss_pred HHHh
Q 019692 290 KSVL 293 (337)
Q Consensus 290 ~~~l 293 (337)
+.+.
T Consensus 220 ~~l~ 223 (296)
T 1inl_A 220 RRIS 223 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=103.51 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=93.5
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~ 199 (337)
.++.-...+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++.+|+ .++.++++|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 344445566666788899999999999999999888864 7999999999999999999999998 679999999876
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..+. ...||+|+++.+.. + ...+++.+.+++++ |.++++++
T Consensus 94 ~~~~---~~~~D~v~~~~~~~---------~--------------------------~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 ALCK---IPDIDIAVVGGSGG---------E--------------------------LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HHTT---SCCEEEEEESCCTT---------C--------------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hccc---CCCCCEEEECCchH---------H--------------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 2221 14799999886621 0 14678888888887 78888877
Q ss_pred C
Q 019692 279 S 279 (337)
Q Consensus 279 S 279 (337)
+
T Consensus 136 ~ 136 (192)
T 1l3i_A 136 L 136 (192)
T ss_dssp B
T ss_pred C
Confidence 5
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=108.02 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=75.6
Q ss_pred HHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcC----CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEec
Q 019692 127 SMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHG 195 (337)
Q Consensus 127 ~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~----~~g~V~avD~~~~~l~~l~~~~~~~g-----~~~v~~~~~ 195 (337)
..+...+ .++++.+|||+|||+|..+..++...+ +.++|+++|+++.+++.++++++..| ..+++++.+
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 3444555 478899999999999999999999875 45799999999999999999999988 678999999
Q ss_pred cCCCCC----CCCCCCCCccEEEECCCCC
Q 019692 196 DFLNLD----PKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 196 D~~~~~----~~~~~~~~fD~IlvDpPCS 220 (337)
|+.... .. ..+||+|++++++.
T Consensus 148 d~~~~~~~~~~~---~~~fD~I~~~~~~~ 173 (227)
T 2pbf_A 148 NIYQVNEEEKKE---LGLFDAIHVGASAS 173 (227)
T ss_dssp CGGGCCHHHHHH---HCCEEEEEECSBBS
T ss_pred ChHhcccccCcc---CCCcCEEEECCchH
Confidence 988743 22 25799999998753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-12 Score=113.50 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=89.3
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL 198 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~ 198 (337)
+++....++... +++|.+|||+|||+|..+..+++.... +.+|+|+|+|+.|++.++++++..+.. +|+++++|+.
T Consensus 56 ~~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 56 IISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc
Confidence 344444444444 478999999999999999999987643 459999999999999999999988764 6999999998
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+++. .+||+|++.- ++.. ..+.+ ...+|++..+.|+| |.++.+.
T Consensus 134 ~~~~-----~~~d~v~~~~------~l~~-----------------~~~~~-------~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 134 DIAI-----ENASMVVLNF------TLQF-----------------LEPSE-------RQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp TCCC-----CSEEEEEEES------CGGG-----------------SCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-----cccccceeee------eeee-----------------cCchh-------HhHHHHHHHHHcCCCcEEEEEe
Confidence 8753 4699998631 2210 01111 24678888888887 7777764
Q ss_pred CC
Q 019692 278 CS 279 (337)
Q Consensus 278 CS 279 (337)
-.
T Consensus 179 ~~ 180 (261)
T 4gek_A 179 KF 180 (261)
T ss_dssp EB
T ss_pred cc
Confidence 33
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=104.85 Aligned_cols=99 Identities=22% Similarity=0.219 Sum_probs=81.1
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+......+...+.+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.++++++..|+.++.++.+|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 136 (215)
T 2yxe_A 57 GQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD 136 (215)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred CcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44445554555666677888999999999999999999999875557999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEECCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+....+. ..+||+|+++.+
T Consensus 137 ~~~~~~~---~~~fD~v~~~~~ 155 (215)
T 2yxe_A 137 GTLGYEP---LAPYDRIYTTAA 155 (215)
T ss_dssp GGGCCGG---GCCEEEEEESSB
T ss_pred cccCCCC---CCCeeEEEECCc
Confidence 8543321 257999998865
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=112.50 Aligned_cols=147 Identities=11% Similarity=0.084 Sum_probs=102.5
Q ss_pred CeEEEe-chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHH---cCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019692 117 GCVFLQ-GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192 (337)
Q Consensus 117 G~~~~Q-d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~---~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~ 192 (337)
|....| .....++..++...++.+|||+|||+|+.+..+++. +.+.++|+++|+++.+++.++ ..+ .+|++
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~ 134 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITL 134 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEE
T ss_pred cccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEE
Confidence 334445 333444445555556789999999999999999997 456789999999999998876 122 57999
Q ss_pred EeccCCCC---CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC-CC
Q 019692 193 LHGDFLNL---DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS-FP 268 (337)
Q Consensus 193 ~~~D~~~~---~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~-~~ 268 (337)
+++|+.+. +... ..+||+|++|..- .+ ...+|..+.+ ++
T Consensus 135 ~~gD~~~~~~l~~~~--~~~fD~I~~d~~~---------~~--------------------------~~~~l~~~~r~~L 177 (236)
T 2bm8_A 135 HQGDCSDLTTFEHLR--EMAHPLIFIDNAH---------AN--------------------------TFNIMKWAVDHLL 177 (236)
T ss_dssp EECCSSCSGGGGGGS--SSCSSEEEEESSC---------SS--------------------------HHHHHHHHHHHTC
T ss_pred EECcchhHHHHHhhc--cCCCCEEEECCch---------Hh--------------------------HHHHHHHHHHhhC
Confidence 99999875 2111 1369999998651 01 1357888875 77
Q ss_pred CC-cEEEEEc-CCCCcccCHHHHHHHhchhcCCCcEEecC
Q 019692 269 GV-ERVVYST-CSIHQVENEDVIKSVLPIAMSFGFQLATP 306 (337)
Q Consensus 269 ~~-G~lvYsT-CS~~~~ENe~vv~~~l~~~~~~~~~~~~~ 306 (337)
++ |.+|+.. |.+.+..+++.+..+++.. ..+|+....
T Consensus 178 kpGG~lv~~d~~~~~~~~~~~~~~~~l~~~-~~~f~~~~~ 216 (236)
T 2bm8_A 178 EEGDYFIIEDMIPYWYRYAPQLFSEYLGAF-RDVLSMDML 216 (236)
T ss_dssp CTTCEEEECSCHHHHHHHCHHHHHHHHHTT-TTTEEEETT
T ss_pred CCCCEEEEEeCcccccccCHHHHHHHHHhC-cccEEEcch
Confidence 76 8888754 3444567777888888532 227888653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=112.76 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=76.5
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCc
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AAN 189 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----------~~~ 189 (337)
........+...+++.+|.+|||+|||+|..+..++...++.++|+++|+++.+++.++++++.+| ..+
T Consensus 89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~ 168 (336)
T 2b25_A 89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 168 (336)
T ss_dssp CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence 333335556667788999999999999999999999987666899999999999999999998754 357
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|+++.+|+.+.....+ .++||+|++|+|
T Consensus 169 v~~~~~d~~~~~~~~~-~~~fD~V~~~~~ 196 (336)
T 2b25_A 169 VDFIHKDISGATEDIK-SLTFDAVALDML 196 (336)
T ss_dssp EEEEESCTTCCC--------EEEEEECSS
T ss_pred eEEEECChHHcccccC-CCCeeEEEECCC
Confidence 9999999987642211 246999999977
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-11 Score=104.97 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=75.4
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 202 (337)
.....+...+++.+|.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..|+ .+++++.+|+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 78 KDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred hhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence 34445566677889999999999999999999987 47999999999999999999999998 679999999987541
Q ss_pred CCCCCCCccEEEECCC
Q 019692 203 KDPAYSEVRAILLDPS 218 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpP 218 (337)
. ...||+|++|+|
T Consensus 155 ~---~~~~D~v~~~~~ 167 (248)
T 2yvl_A 155 P---EGIFHAAFVDVR 167 (248)
T ss_dssp C---TTCBSEEEECSS
T ss_pred C---CCcccEEEECCc
Confidence 2 257999999887
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=120.89 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=107.5
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHH
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK------------GKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~------------~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
.|.++-...-+.+++..+.+.++.+|||.|||+|++...+++.+. ....++|+|+++.+++.++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 466666666777888888999999999999999999999887652 12579999999999999999999
Q ss_pred HhCCC--cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCc---ccCccCCCCCCCCCCCcccHHHHHHHHHHHH
Q 019692 184 LSGAA--NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE---RLDHLLPSHASGHTADPTEMERLNKLSAFQK 258 (337)
Q Consensus 184 ~~g~~--~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 258 (337)
..|+. ++.+.++|+...+.. .+||+|+.+||.++.....+ +.+..++ -...+.
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~------------------~~~~~~ 287 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVDINRPDFYVE------------------TKNNQL 287 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCCCCCTTSSSC------------------CSCHHH
T ss_pred HhCCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcccccchhhHhhcCCC------------------CcchHH
Confidence 99985 688899998876532 47999999999987653221 1111110 011256
Q ss_pred HHHHHHhCCCCC-cEEEEEcCC
Q 019692 259 KALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 259 ~lL~~A~~~~~~-G~lvYsTCS 279 (337)
..+.++++++++ |++++.++.
T Consensus 288 ~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 288 NFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEH
T ss_pred HHHHHHHHHhccCCEEEEEECC
Confidence 788888888876 888887754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-12 Score=112.99 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=93.0
Q ss_pred EEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 019692 120 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 198 (337)
Q Consensus 120 ~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~ 198 (337)
.+......++..++...++.+|||+|||+|..+..++..+.+.++|+++|+++.+++.++++++..|+ .+|+++.+|+.
T Consensus 52 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 131 (229)
T 2avd_A 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 131 (229)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHH
Confidence 33444444555555566789999999999999999999876568999999999999999999999998 46999999986
Q ss_pred CCCCCCC---CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE
Q 019692 199 NLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV 274 (337)
Q Consensus 199 ~~~~~~~---~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv 274 (337)
+...... ...+||+|++|++... +..+++.+.+++++ |.++
T Consensus 132 ~~~~~~~~~~~~~~~D~v~~d~~~~~-----------------------------------~~~~l~~~~~~L~pgG~lv 176 (229)
T 2avd_A 132 ETLDELLAAGEAGTFDVAVVDADKEN-----------------------------------CSAYYERCLQLLRPGGILA 176 (229)
T ss_dssp HHHHHHHHTTCTTCEEEEEECSCSTT-----------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHhcCCCCCccEEEECCCHHH-----------------------------------HHHHHHHHHHHcCCCeEEE
Confidence 5421110 0147999999987110 13567788887777 6777
Q ss_pred EEcCC
Q 019692 275 YSTCS 279 (337)
Q Consensus 275 YsTCS 279 (337)
...+.
T Consensus 177 ~~~~~ 181 (229)
T 2avd_A 177 VLRVL 181 (229)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 65544
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=106.54 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=66.9
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----CCCCCCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----LDPKDPAYS 208 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~----~~~~~~~~~ 208 (337)
+.+.++.+|||+|||+|..+.+++...+ .++|+++|+++.+++.++++++.. .|+.++.+|+.. .+.. .
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~----~ 142 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV----E 142 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS----C
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC----c
Confidence 3456899999999999999999999865 589999999999999999998765 689999999987 3321 5
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.||+|+.|+|
T Consensus 143 ~~D~v~~~~~ 152 (230)
T 1fbn_A 143 KVDVIYEDVA 152 (230)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEEecC
Confidence 7999998765
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-11 Score=106.45 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=81.2
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
..|....+......+...+.+.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.++++++..|+.+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 146 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL 146 (235)
T ss_dssp STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3455666666666677778889999999999999999999999864 78999999999999999999999998899999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|+.. .... ...||+|+++.+
T Consensus 147 ~d~~~-~~~~--~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 147 GDGSK-GFPP--KAPYDVIIVTAG 167 (235)
T ss_dssp SCGGG-CCGG--GCCEEEEEECSB
T ss_pred CCccc-CCCC--CCCccEEEECCc
Confidence 99732 2111 235999999866
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=103.67 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..++... ..|+++|+++.+++.++++++..++ +++++++|+.+..+.. ....+||+|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 78899999999999999998862 3499999999999999999999988 8999999987642211 00136999999
Q ss_pred CCCCC
Q 019692 216 DPSCS 220 (337)
Q Consensus 216 DpPCS 220 (337)
|||..
T Consensus 117 ~~~~~ 121 (171)
T 1ws6_A 117 APPYA 121 (171)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 99965
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-11 Score=110.28 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=81.3
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
|......+...+.+++|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+.+++++.+|+.+..
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 44445566677888999999999999999999999986435789999999999999999999999988999999998754
Q ss_pred CCCCCCCCccEEEECCCCC
Q 019692 202 PKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCS 220 (337)
+. .++||+|++++++.
T Consensus 140 ~~---~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 140 PE---FSPYDVIFVTVGVD 155 (317)
T ss_dssp GG---GCCEEEEEECSBBS
T ss_pred cc---CCCeEEEEEcCCHH
Confidence 32 25799999998854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=110.64 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHh---CCCc----------------------
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS---GAAN---------------------- 189 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~---g~~~---------------------- 189 (337)
.++.+|||+|||+|..+..++..+ .+..+|+|+|+|+.+++.+++++... |+.+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 467899999999999999998873 23468999999999999999998876 5532
Q ss_pred ----EE-------------EEeccCCCCCCCC--CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHH
Q 019692 190 ----IE-------------VLHGDFLNLDPKD--PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 250 (337)
Q Consensus 190 ----v~-------------~~~~D~~~~~~~~--~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~ 250 (337)
|+ ++++|+.+..... ....+||+|++|||......+..
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~----------------------- 186 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG----------------------- 186 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----------------------
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----------------------
Confidence 66 8999987743200 00137999999999654322110
Q ss_pred HHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 251 NKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 251 ~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
......+..+++++.+++++ |.++++.++
T Consensus 187 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 187 QVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred cccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 01123456788888888876 888876555
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=106.56 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=78.8
Q ss_pred CeEEEechhhHHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcCC-----CCEEEEEeCCHHHHHHHHHHHHHhC---
Q 019692 117 GCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKG-----KGKIVACELNKERVRRLKDTIKLSG--- 186 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~-----~g~V~avD~~~~~l~~l~~~~~~~g--- 186 (337)
|..+.|......+...+ .++++.+|||+|||+|..+..+++..+. .++|+++|+++.+++.+++++++.|
T Consensus 62 ~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 141 (227)
T 1r18_A 62 GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 141 (227)
T ss_dssp TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc
Confidence 33444554445555666 4788999999999999999999997642 3699999999999999999999877
Q ss_pred --CCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 187 --AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 187 --~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
..+++++.+|+....+. ..+||+|+++.++
T Consensus 142 ~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~~~~ 173 (227)
T 1r18_A 142 LDSGQLLIVEGDGRKGYPP---NAPYNAIHVGAAA 173 (227)
T ss_dssp HHHTSEEEEESCGGGCCGG---GCSEEEEEECSCB
T ss_pred cCCCceEEEECCcccCCCc---CCCccEEEECCch
Confidence 67899999998763221 2579999998874
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=100.67 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=86.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----------
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---------- 203 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~---------- 203 (337)
++++.+|||+|||+|+.+..+++..++ .++|+|+|+++.. ...+++++++|+.+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence 578899999999999999999998753 5799999999831 245789999998876410
Q ss_pred ------------CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-
Q 019692 204 ------------DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV- 270 (337)
Q Consensus 204 ------------~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~- 270 (337)
.....+||+|++|+++.-.|. ...+.....+++..+|..+.+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~---------------------~~~d~~~~~~~~~~~l~~~~~~Lkpg 147 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN---------------------KIDDHLNSCELTLSITHFMEQYINIG 147 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSC---------------------HHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC---------------------cccCHHHHHHHHHHHHHHHHHHccCC
Confidence 001257999999987544332 1223334456678899999998887
Q ss_pred cEEEEEcCCCCcccCHHHHHHHh
Q 019692 271 ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 271 G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
|.++..+. ..++...+...+
T Consensus 148 G~lv~~~~---~~~~~~~l~~~l 167 (201)
T 2plw_A 148 GTYIVKMY---LGSQTNNLKTYL 167 (201)
T ss_dssp EEEEEEEE---CSTTHHHHHHHH
T ss_pred CEEEEEEe---CCCCHHHHHHHH
Confidence 77776443 234544555555
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=122.21 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=104.7
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC-----------------CEEEEEeCCHHHHHH
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRR 177 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----------------g~V~avD~~~~~l~~ 177 (337)
..|.++-.+.-+.+++..+.+.++.+|+|.|||+|++.+.++..+... ..++|+|+++.+++.
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 357777777777888888999999999999999999999888875321 379999999999999
Q ss_pred HHHHHHHhCCCc-----EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHH
Q 019692 178 LKDTIKLSGAAN-----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK 252 (337)
Q Consensus 178 l~~~~~~~g~~~-----v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (337)
++.|+...|+.+ +.+.++|+...+... ..+||+|+.|||+++......+.+...+
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~--~~~fD~Vv~NPPf~~~~~~~~~~~~~~~------------------ 286 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN--LPKAHIVATNPPFGSAAGTNITRTFVHP------------------ 286 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT--SCCEEEEEECCCCTTCSSCCCCSCCSSC------------------
T ss_pred HHHHHHHhCCCccccccCCeEeCCCccccccc--ccCCeEEEECCCcccccchhhHhhcCCC------------------
Confidence 999999888875 788999987643211 2579999999999876432211111110
Q ss_pred HHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 253 LSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 253 l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
-.+.+...+.++++++++ |++++.+.
T Consensus 287 ~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 287 TSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 011234678888888876 77777654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=104.97 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCcEEEEeccCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--------GAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--------g~~~v~~~~~D~~~~~~~~~~ 206 (337)
+.++.+|||+|||+|..+..++... +...|+|+|+++.+++.++++++.+ |+.|+.++.+|+.+..+....
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 4568899999999999999999874 4569999999999999999999987 888999999999873221111
Q ss_pred CCCccEEEECCCC
Q 019692 207 YSEVRAILLDPSC 219 (337)
Q Consensus 207 ~~~fD~IlvDpPC 219 (337)
...+|.|++.-|.
T Consensus 126 ~~~~d~v~~~~p~ 138 (246)
T 2vdv_E 126 KGQLSKMFFCFPD 138 (246)
T ss_dssp TTCEEEEEEESCC
T ss_pred ccccCEEEEECCC
Confidence 2578999876553
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=104.90 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=69.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC-CCCCCC--CCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL-DPKDPA--YSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~-~~~~~~--~~~fD~ 212 (337)
++.+|||+|||+|..+..++.... ..+|+++|+++.+++.++++++.+|+.+ |+++++|+.+. ....+. ..+||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 577999999999999999988753 4799999999999999999999999875 99999997762 211111 147999
Q ss_pred EEECCCCCCcc
Q 019692 213 ILLDPSCSGSG 223 (337)
Q Consensus 213 IlvDpPCSg~G 223 (337)
|++|||+...+
T Consensus 144 i~~npp~~~~~ 154 (254)
T 2h00_A 144 CMCNPPFFANQ 154 (254)
T ss_dssp EEECCCCC---
T ss_pred EEECCCCccCc
Confidence 99999987655
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=114.78 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=103.3
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
..|.++-.+.-...++..+...++.+|||+|||+|..+..+++...+...|+|+|+++.+++.+ .++.+++
T Consensus 17 ~~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~ 87 (421)
T 2ih2_A 17 SLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGIL 87 (421)
T ss_dssp ----CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEE
T ss_pred cCceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEe
Confidence 3466666666677777777766678999999999999999998764457999999999998766 4689999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHH----------HHHHHHHHHHH
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKL----------SAFQKKALRHA 264 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l----------~~~Q~~lL~~A 264 (337)
+|+...... .+||+|+++||+...+...+.. . + ...+....+ .+.+..++.++
T Consensus 88 ~D~~~~~~~----~~fD~Ii~NPPy~~~~~~~~~~-~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 150 (421)
T 2ih2_A 88 ADFLLWEPG----EAFDLILGNPPYGIVGEASKYP-I----H--------VFKAVKDLYKKAFSTWKGKYNLYGAFLEKA 150 (421)
T ss_dssp SCGGGCCCS----SCEEEEEECCCCCCBSCTTTCS-B----C--------CCHHHHHHHHHHCTTCCTTCCHHHHHHHHH
T ss_pred CChhhcCcc----CCCCEEEECcCccCcccccccc-c----c--------cCHHHHHHHHHhhhcccCCccHHHHHHHHH
Confidence 999876532 5799999999998765311000 0 0 001111111 23566889999
Q ss_pred hCCCCC-cEEEEEcCCC--CcccCHHHHHHHh
Q 019692 265 LSFPGV-ERVVYSTCSI--HQVENEDVIKSVL 293 (337)
Q Consensus 265 ~~~~~~-G~lvYsTCS~--~~~ENe~vv~~~l 293 (337)
.+++++ |.+++.+++- .....+.+.+.++
T Consensus 151 ~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~ 182 (421)
T 2ih2_A 151 VRLLKPGGVLVFVVPATWLVLEDFALLREFLA 182 (421)
T ss_dssp HHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred HHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 998886 8888877652 2223344444444
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=106.09 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=92.7
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 206 (337)
.+...+.+++|.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.++++++..|+. +|+++.+|+.++ .
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-- 135 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D-- 135 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C--
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C--
Confidence 345556788999999999999999999999763 78999999999999999999999987 799999999876 1
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ 282 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~ 282 (337)
++||+|++.. ++..-+|. +.. ... +....+++.+.+++++ |.++..+.+...
T Consensus 136 -~~fD~v~~~~------~~~~~~d~---~~~-------~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 136 -EPVDRIVSLG------AFEHFADG---AGD-------AGF-------ERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp -CCCSEEEEES------CGGGTTCC---SSC-------CCT-------THHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred -CCccEEEEcc------hHHhcCcc---ccc-------cch-------hHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 5799999752 22221110 000 000 1135778888888887 888887766543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-11 Score=110.50 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=93.1
Q ss_pred EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019692 121 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN 199 (337)
Q Consensus 121 ~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~ 199 (337)
++.....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+.+ |.++.+|+.+
T Consensus 44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 344455566666666788999999999999999999987656899999999999999999999999866 9999999765
Q ss_pred CCCCC-------------CCC-CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 200 LDPKD-------------PAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 200 ~~~~~-------------~~~-~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
..+.. +.. ++||+|++|... ++ ....++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~---------~~--------------------------~~~~l~~~~ 168 (239)
T 2hnk_A 124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK---------EN--------------------------YPNYYPLIL 168 (239)
T ss_dssp HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG---------GG--------------------------HHHHHHHHH
T ss_pred HHHHHHhhcccccccccccCCCCCcCEEEEeCCH---------HH--------------------------HHHHHHHHH
Confidence 32100 001 469999998530 00 125577777
Q ss_pred CCCCC-cEEEEEcCCC
Q 019692 266 SFPGV-ERVVYSTCSI 280 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~ 280 (337)
+++++ |.++..++.+
T Consensus 169 ~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 169 KLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHEEEEEEEEEECSSG
T ss_pred HHcCCCeEEEEEcccc
Confidence 77776 7787776544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=102.67 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=90.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~ 205 (337)
..+...+.+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++.+|+.+++..+
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 127 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED- 127 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT-
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC-
Confidence 344555677899999999999999999999875 479999999999999999999999875 5999999998876432
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++.-. +..-++ ...+|+.+.+++++ |.++.++..
T Consensus 128 --~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 128 --ASFDAVWALES------LHHMPD--------------------------RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp --TCEEEEEEESC------TTTSSC--------------------------HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred --CCccEEEEech------hhhCCC--------------------------HHHHHHHHHHHcCCCeEEEEEEee
Confidence 57999996322 211101 14778899998887 777777644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=103.39 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=78.6
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
.|....+......+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...+ ++.++.+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~ 123 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG 123 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence 35555555555666777788899999999999999999999873 799999999999999999998777 7999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCCC
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
|+....+. .++||+|+++.++
T Consensus 124 d~~~~~~~---~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 124 DGTLGYEE---EKPYDRVVVWATA 144 (231)
T ss_dssp CGGGCCGG---GCCEEEEEESSBB
T ss_pred Cccccccc---CCCccEEEECCcH
Confidence 98773321 2579999998663
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=98.44 Aligned_cols=85 Identities=22% Similarity=0.143 Sum_probs=72.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..++.++.++.+|+.+.+. .
T Consensus 22 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~-- 95 (199)
T 2xvm_A 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-D-- 95 (199)
T ss_dssp HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-C--
T ss_pred HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-C--
Confidence 34556667778899999999999999999886 36999999999999999999999998889999999988764 2
Q ss_pred CCCccEEEECCC
Q 019692 207 YSEVRAILLDPS 218 (337)
Q Consensus 207 ~~~fD~IlvDpP 218 (337)
++||+|++...
T Consensus 96 -~~~D~v~~~~~ 106 (199)
T 2xvm_A 96 -RQYDFILSTVV 106 (199)
T ss_dssp -CCEEEEEEESC
T ss_pred -CCceEEEEcch
Confidence 57999997643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-10 Score=107.75 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=82.5
Q ss_pred CchhhhcCeEEEechhh---HHH---HHHhCCCCCCeEEeecCCchhHHHHHHHHcCC----------------------
Q 019692 110 VHPLIVNGCVFLQGKAS---SMV---AAALAPKPGWKVLDACSAPGNKTVHLAALMKG---------------------- 161 (337)
Q Consensus 110 ~~~~~~~G~~~~Qd~ss---~l~---~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---------------------- 161 (337)
...+++.|+...|..+. .++ .......++..|||.|||+|++++.+|....+
T Consensus 162 G~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w 241 (385)
T 3ldu_A 162 GDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIW 241 (385)
T ss_dssp CSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHH
T ss_pred CChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHH
Confidence 34667788776664332 122 33456678999999999999999888876422
Q ss_pred ---------------CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 162 ---------------KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 162 ---------------~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
...|+|+|+|+.+++.+++|++.+|+. +|++.++|+.++... .+||+|++|||.
T Consensus 242 ~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPPy 311 (385)
T 3ldu_A 242 WDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCCC
T ss_pred HHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCCC
Confidence 157999999999999999999999986 699999999987643 479999999994
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=99.84 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=86.4
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 206 (337)
.+...+..+++ +|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+. +++++++|+.+++...
T Consensus 35 ~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 109 (219)
T 3dlc_A 35 NIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED-- 109 (219)
T ss_dssp HHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT--
T ss_pred HHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc--
Confidence 34445566666 9999999999999999987 3469999999999999999999999875 6999999998876432
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++||+|++..... .-++ ...+|+.+.+++++ |.++.++
T Consensus 110 -~~~D~v~~~~~l~------~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 110 -NYADLIVSRGSVF------FWED--------------------------VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp -TCEEEEEEESCGG------GCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccccEEEECchHh------hccC--------------------------HHHHHHHHHHhCCCCCEEEEEe
Confidence 5799999765311 1000 24578888888887 6776654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=98.38 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=90.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..|+.+++++++|+.+..+. ++||+|+++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE----PPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC----SCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCcc----CCcCEEEEe
Confidence 47899999999999999999875 4579999999999999999999999998899999999887532 579999964
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhch
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPI 295 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~ 295 (337)
.- . + ...++..+.+++++ |.++...... ..+.+..++
T Consensus 140 ~~-------~---~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~-- 177 (207)
T 1jsx_A 140 AF-------A---S--------------------------LNDMVSWCHHLPGEQGRFYALKGQM----PEDEIALLP-- 177 (207)
T ss_dssp CS-------S---S--------------------------HHHHHHHHTTSEEEEEEEEEEESSC----CHHHHHTSC--
T ss_pred cc-------C---C--------------------------HHHHHHHHHHhcCCCcEEEEEeCCC----chHHHHHHh--
Confidence 21 0 0 14788899898887 6666654332 233444443
Q ss_pred hcCCCcEEec
Q 019692 296 AMSFGFQLAT 305 (337)
Q Consensus 296 ~~~~~~~~~~ 305 (337)
. +|+.+.
T Consensus 178 --~-g~~~~~ 184 (207)
T 1jsx_A 178 --E-EYQVES 184 (207)
T ss_dssp --T-TEEEEE
T ss_pred --c-CCceee
Confidence 1 777654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-11 Score=98.25 Aligned_cols=121 Identities=26% Similarity=0.299 Sum_probs=88.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PKDPA 206 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~--------~~~~~ 206 (337)
++++.+|||+|||+|..+..+++.+++..+|+++|+++ +++ ..+++++.+|+.+.+ ..
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~--- 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVG--- 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHT---
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCC---
Confidence 67899999999999999999999875568999999999 653 257999999998763 22
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
.++||+|++|+|+...+.. ..+.......+..+++.+.+++++ |.++.++. ..++
T Consensus 86 ~~~~D~i~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~~ 141 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTP---------------------AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF---QGEG 141 (180)
T ss_dssp TCCEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE---SSTT
T ss_pred CCceeEEEECCCccccCCC---------------------ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe---cCCc
Confidence 2579999999998765521 222333445568889999988887 77775443 3344
Q ss_pred HHHHHHHh
Q 019692 286 EDVIKSVL 293 (337)
Q Consensus 286 e~vv~~~l 293 (337)
...+...+
T Consensus 142 ~~~~~~~~ 149 (180)
T 1ej0_A 142 FDEYLREI 149 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=111.24 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH-------HHhCC--CcEEEEeccCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-------KLSGA--ANIEVLHGDFL 198 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~-------~~~g~--~~v~~~~~D~~ 198 (337)
.+...+.+++|++|||+|||+|..++.+|... +..+|+|+|+++.+++.+++++ +.+|+ .+|+++++|+.
T Consensus 164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 34456788999999999999999999999875 4457999999999999998765 44576 57999999998
Q ss_pred CCCCCCCCCCCccEEEECCCC
Q 019692 199 NLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPC 219 (337)
+++..+ .+..||+|+++++|
T Consensus 243 ~lp~~d-~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 243 SEEWRE-RIANTSVIFVNNFA 262 (438)
T ss_dssp SHHHHH-HHHTCSEEEECCTT
T ss_pred CCcccc-ccCCccEEEEcccc
Confidence 875321 12469999999885
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=107.22 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=101.5
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
|..+.++...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+++. ++++.+|+....
T Consensus 182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~- 258 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV- 258 (343)
T ss_dssp CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-
T ss_pred cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-
Confidence 3456777777777778899999999999999999874 4469999999999999999999998876 677888987643
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.++||+|+++||..- |. . ........+++.+.+.+++ |.++.++.+..
T Consensus 259 ----~~~fD~Iv~~~~~~~-g~----------------------~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 259 ----KGRFDMIISNPPFHD-GM----------------------Q----TSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp ----CSCEEEEEECCCCCS-SS----------------------H----HHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred ----cCCeeEEEECCCccc-Cc----------------------c----CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 257999999999531 10 0 0112346789999998887 88888777766
Q ss_pred cccCHHHHHHHh
Q 019692 282 QVENEDVIKSVL 293 (337)
Q Consensus 282 ~~ENe~vv~~~l 293 (337)
+. +...+...
T Consensus 308 ~~--~~~l~~~f 317 (343)
T 2pjd_A 308 PY--PDVLDETF 317 (343)
T ss_dssp SH--HHHHHHHH
T ss_pred Cc--HHHHHHhc
Confidence 53 34444444
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-10 Score=107.39 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=82.0
Q ss_pred CchhhhcCeEEEechhh------HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC----------------------
Q 019692 110 VHPLIVNGCVFLQGKAS------SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---------------------- 161 (337)
Q Consensus 110 ~~~~~~~G~~~~Qd~ss------~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---------------------- 161 (337)
..++++.||-..|..+. ..+......+++..|+|.+||+|++.+.+|....+
T Consensus 161 g~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w 240 (384)
T 3ldg_A 161 GPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALV 240 (384)
T ss_dssp SSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHH
T ss_pred CCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHH
Confidence 34567777755554332 22334456788999999999999998888776432
Q ss_pred ---------------CCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 162 ---------------KGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 162 ---------------~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
..+|+|+|+|+.+++.+++|++.+|+.+ |++.++|+.+++.. ..||+|++|||.
T Consensus 241 ~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPY 310 (384)
T 3ldg_A 241 TRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCC
T ss_pred HHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCch
Confidence 1469999999999999999999999975 99999999987643 479999999996
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=98.26 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=85.7
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLDP 202 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-----~v~~~~~D~~~~~~ 202 (337)
.+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..++. +++++++|+...+.
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 34445555678999999999999999998853 3469999999999999999999888775 69999999865543
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
. .++||+|++.-. +.. .+.. ....+|+.+.+++++ |.++.+.+
T Consensus 99 ~---~~~fD~v~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 99 R---FHGYDAATVIEV------IEH-----------------LDLS-------RLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp G---GCSCSEEEEESC------GGG-----------------CCHH-------HHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred c---CCCcCEEeeHHH------HHc-----------------CCHH-------HHHHHHHHHHHHcCCCEEEEEccC
Confidence 2 257999996422 211 0111 125788889898887 55554444
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-11 Score=106.25 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=92.6
Q ss_pred hcCeEEEechhhHHH---HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019692 115 VNGCVFLQGKASSMV---AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 191 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~---~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~ 191 (337)
..|.-++|+=..-+. +.++ ..+|.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++.+..+. +++
T Consensus 36 ~~g~~vm~~we~~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~-~~~ 111 (236)
T 3orh_A 36 ILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVI 111 (236)
T ss_dssp ETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEE
T ss_pred hcCHHHHHHHHHHHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCC-ceE
Confidence 345556665433322 2333 4679999999999999999888752 35899999999999999999987764 588
Q ss_pred EEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-
Q 019692 192 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV- 270 (337)
Q Consensus 192 ~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~- 270 (337)
++.+|+.......+ .++||.|+.|+..+...... . .....+++++.++|+|
T Consensus 112 ~~~~~a~~~~~~~~-~~~FD~i~~D~~~~~~~~~~-~--------------------------~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 112 PLKGLWEDVAPTLP-DGHFDGILYDTYPLSEETWH-T--------------------------HQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEESCHHHHGGGSC-TTCEEEEEECCCCCBGGGTT-T--------------------------HHHHHHHHTHHHHEEEE
T ss_pred EEeehHHhhccccc-ccCCceEEEeeeecccchhh-h--------------------------cchhhhhhhhhheeCCC
Confidence 99999876543322 36799999998755433221 0 1135678888888887
Q ss_pred cEEEEE
Q 019692 271 ERVVYS 276 (337)
Q Consensus 271 G~lvYs 276 (337)
|.++|.
T Consensus 164 G~l~f~ 169 (236)
T 3orh_A 164 GVLTYC 169 (236)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 788874
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-09 Score=105.21 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=81.1
Q ss_pred chhhhcCeEEEechh------hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC-----------------------
Q 019692 111 HPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG----------------------- 161 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~----------------------- 161 (337)
.++++.|+-..|..+ +..+.......++..|||.+||+|++++.+|....+
T Consensus 169 ~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~ 248 (393)
T 3k0b_A 169 AGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWA 248 (393)
T ss_dssp SCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHH
T ss_pred CcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHH
Confidence 345566654333222 233345566788999999999999998888876432
Q ss_pred --------------CCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 162 --------------KGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 162 --------------~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
..+|+++|+|+.+++.+++|++.+|+.+ |+++++|+.+++.. .+||+|++|||.
T Consensus 249 ~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPY 317 (393)
T 3k0b_A 249 DARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCC
T ss_pred HHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCC
Confidence 1469999999999999999999999975 99999999987643 479999999995
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=103.41 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=91.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------hCCCcEEEEeccCCC-CCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------SGAANIEVLHGDFLN-LDPKDPAY 207 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~------~g~~~v~~~~~D~~~-~~~~~~~~ 207 (337)
..++.+|||+|||+|..+..+|... +...|+|+|+++.+++.++++++. .+..||.++.+|+.. ++...+ .
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~-~ 121 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY-K 121 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC-T
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC-C
Confidence 3467799999999999999998874 457999999999999999998875 467889999999987 331111 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
+.||.|++.-|.. ... .+...-.-.+..+|+.+.++|++ |.++.+|+ ++
T Consensus 122 ~~~D~v~~~~~dp---------~~k---------------~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td------~~ 171 (235)
T 3ckk_A 122 GQLTKMFFLFPDP---------HFK---------------RTKHKWRIISPTLLAEYAYVLRVGGLVYTITD------VL 171 (235)
T ss_dssp TCEEEEEEESCC-----------------------------------CCCHHHHHHHHHHEEEEEEEEEEES------CH
T ss_pred cCeeEEEEeCCCc---------hhh---------------hhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC------CH
Confidence 5799999865421 100 00000001135688888888887 77777665 34
Q ss_pred HHHHHHhch-hcCCCcEEe
Q 019692 287 DVIKSVLPI-AMSFGFQLA 304 (337)
Q Consensus 287 ~vv~~~l~~-~~~~~~~~~ 304 (337)
....++++. ..+.+|+..
T Consensus 172 ~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 172 ELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp HHHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHCCCcccc
Confidence 444444432 234457765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=105.96 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=90.3
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
+.+...+....++.+|||+|||+|..+..++....+..+|+++|+++.+++.+++++...+. +++++++|+.+++..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-- 87 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-- 87 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS--
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC--
Confidence 34444445677899999999999999999998765457999999999999999999988775 799999999987642
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++... +..-+| ...+|+++.+++++ |.++.....
T Consensus 88 --~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 --DKYDIAICHAF------LLHMTT--------------------------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp --SCEEEEEEESC------GGGCSS--------------------------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --CCeeEEEECCh------hhcCCC--------------------------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 57999998643 111111 14778888888887 777766554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=102.09 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=91.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEeccCCCC
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------------GAANIEVLHGDFLNL 200 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~------------g~~~v~~~~~D~~~~ 200 (337)
+.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.++++.+.. +..+|+++++|+.++
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 45678999999999999999999986 369999999999999999876431 235799999999987
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+..+ .++||+|++-. ++.. .+.+ .....+++..+++++ |.+++.|+.
T Consensus 95 ~~~~--~~~fD~v~~~~------~l~~-----------------l~~~-------~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 95 TARD--IGHCAAFYDRA------AMIA-----------------LPAD-------MRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp THHH--HHSEEEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred Cccc--CCCEEEEEECc------chhh-----------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 6431 14799998522 1211 0111 124577888888887 775666655
Q ss_pred CCcc--------cCHHHHHHHhchhcCCCcEEe
Q 019692 280 IHQV--------ENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 280 ~~~~--------ENe~vv~~~l~~~~~~~~~~~ 304 (337)
..+. -+++.+...++ . ||++.
T Consensus 143 ~~~~~~~~~~~~~~~~el~~~~~---~-gf~i~ 171 (203)
T 1pjz_A 143 YDQALLEGPPFSVPQTWLHRVMS---G-NWEVT 171 (203)
T ss_dssp SCSSSSSSCCCCCCHHHHHHTSC---S-SEEEE
T ss_pred cCccccCCCCCCCCHHHHHHHhc---C-CcEEE
Confidence 4321 13455666552 3 77764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.3e-11 Score=104.37 Aligned_cols=111 Identities=9% Similarity=-0.010 Sum_probs=82.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCC-HHHHHHH---HHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-KERVRRL---KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~-~~~l~~l---~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.+++++|||+|||+|..+..++.. .+...|+|+|+| +.+++.+ ++++++.|+.|+.++.+|+..++... +..+
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~--~d~v 98 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL--KNIA 98 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG--TTCE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc--cCeE
Confidence 367899999999999999999875 345789999999 6666666 88888889989999999999885322 2568
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
|.|.+..|.. .........+..+|..+.+++++ |.++.
T Consensus 99 ~~i~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 99 DSISILFPWG---------------------------TLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEESCCH---------------------------HHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEeCCCc---------------------------HHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 8888877611 11111111124678888899888 66666
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=104.34 Aligned_cols=96 Identities=25% Similarity=0.300 Sum_probs=80.2
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDF 197 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~ 197 (337)
|..+......++..+.+.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.++++++..|. .+++++++|+
T Consensus 10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~ 86 (285)
T 1zq9_A 10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86 (285)
T ss_dssp EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence 3344555566677788889999999999999999999987 36899999999999999999987776 5799999999
Q ss_pred CCCCCCCCCCCCccEEEECCCCCCc
Q 019692 198 LNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.+++. ..||.|++++|+..+
T Consensus 87 ~~~~~-----~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 87 LKTDL-----PFFDTCVANLPYQIS 106 (285)
T ss_dssp TTSCC-----CCCSEEEEECCGGGH
T ss_pred ecccc-----hhhcEEEEecCcccc
Confidence 87642 368999999997654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=104.90 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=77.9
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
|.....-...++..+++.++++|||+|||+|..|..+++. .++|+|+|+|+.+++.++++++ +..+++++++|+.
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 4444444556677788899999999999999999999987 3799999999999999999987 3568999999999
Q ss_pred CCCCCCCCCCCccEEEECCCCC
Q 019692 199 NLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCS 220 (337)
+++... ..||+|+.++|..
T Consensus 107 ~~~~~~---~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 107 KVDLNK---LDFNKVVANLPYQ 125 (295)
T ss_dssp TSCGGG---SCCSEEEEECCGG
T ss_pred hCCccc---CCccEEEEeCccc
Confidence 876432 3699999999953
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-10 Score=101.50 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=71.6
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
......++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...|+.+++++.+|+..++... ++|
T Consensus 31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~f 106 (276)
T 3mgg_A 31 HDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED---SSF 106 (276)
T ss_dssp TTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT---TCE
T ss_pred hcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC---CCe
Confidence 33445789999999999999999999884 45799999999999999999999999989999999998876432 679
Q ss_pred cEEEECC
Q 019692 211 RAILLDP 217 (337)
Q Consensus 211 D~IlvDp 217 (337)
|+|++..
T Consensus 107 D~v~~~~ 113 (276)
T 3mgg_A 107 DHIFVCF 113 (276)
T ss_dssp EEEEEES
T ss_pred eEEEEec
Confidence 9999753
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-10 Score=96.82 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=63.5
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++ +++++++|+.+++ ++||+|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~------~~~D~v 114 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------GKYDTW 114 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------CCEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC------CCeeEE
Confidence 4567899999999999999999876 34689999999999999999875 6889999998863 469999
Q ss_pred EECCCC
Q 019692 214 LLDPSC 219 (337)
Q Consensus 214 lvDpPC 219 (337)
++|||.
T Consensus 115 ~~~~p~ 120 (200)
T 1ne2_A 115 IMNPPF 120 (200)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999994
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-11 Score=104.33 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=88.7
Q ss_pred CeEEEechhhHHHHHH--hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019692 117 GCVFLQGKASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 194 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~--l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~ 194 (337)
|.-.+++-...++..+ +.+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++.+..+ .++.+++
T Consensus 38 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~ 114 (236)
T 1zx0_A 38 GKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLK 114 (236)
T ss_dssp TEEEEEGGGHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEe
Confidence 4444554443333222 22567899999999999999988664 23489999999999999999988777 5799999
Q ss_pred ccCCCC--CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-c
Q 019692 195 GDFLNL--DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-E 271 (337)
Q Consensus 195 ~D~~~~--~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G 271 (337)
+|+.++ +..+ ++||+|++|.- +. .. ++. . ......+++++.+++++ |
T Consensus 115 ~d~~~~~~~~~~---~~fD~V~~d~~--~~-~~---~~~--------------~-------~~~~~~~l~~~~r~LkpgG 164 (236)
T 1zx0_A 115 GLWEDVAPTLPD---GHFDGILYDTY--PL-SE---ETW--------------H-------THQFNFIKNHAFRLLKPGG 164 (236)
T ss_dssp SCHHHHGGGSCT---TCEEEEEECCC--CC-BG---GGT--------------T-------THHHHHHHHTHHHHEEEEE
T ss_pred cCHHHhhcccCC---CceEEEEECCc--cc-ch---hhh--------------h-------hhhHHHHHHHHHHhcCCCe
Confidence 998876 3222 57999999721 11 11 000 0 01124578888888887 7
Q ss_pred EEEEEcCC
Q 019692 272 RVVYSTCS 279 (337)
Q Consensus 272 ~lvYsTCS 279 (337)
.+++..++
T Consensus 165 ~l~~~~~~ 172 (236)
T 1zx0_A 165 VLTYCNLT 172 (236)
T ss_dssp EEEECCHH
T ss_pred EEEEEecC
Confidence 88876544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-10 Score=101.92 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHHHHh----CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCC
Q 019692 127 SMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD 201 (337)
Q Consensus 127 ~l~~~~l----~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~ 201 (337)
..+...+ .+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. +++++.+|+.+++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 3444455 77889999999999999999999875 359999999999999999999999884 6999999998876
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..+ ++||+|++.- ++..-++ ...+|+.+.+++++ |.++.++.
T Consensus 146 ~~~---~~fD~v~~~~------~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 CED---NSYDFIWSQD------AFLHSPD--------------------------KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCT---TCEEEEEEES------CGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC---CCEeEEEecc------hhhhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 432 5799999642 1211111 24678888888887 77777754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-11 Score=113.37 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+|.+|||+|||+|..++.++.. .++|+++|+|+.+++.+++|++.+ |+++|+++++|+.++..... ..+||+|
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~-~~~fDvV 167 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIK-TFHPDYI 167 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHH-HHCCSEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhcc-CCCceEE
Confidence 35899999999999999988875 479999999999999999999999 98889999999987522100 1369999
Q ss_pred EECCCCCCc
Q 019692 214 LLDPSCSGS 222 (337)
Q Consensus 214 lvDpPCSg~ 222 (337)
++|||..+.
T Consensus 168 ~lDPPrr~~ 176 (410)
T 3ll7_A 168 YVDPARRSG 176 (410)
T ss_dssp EECCEEC--
T ss_pred EECCCCcCC
Confidence 999998774
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-10 Score=98.83 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=68.4
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLDP 202 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-----~v~~~~~D~~~~~~ 202 (337)
.+...+...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...++. +++++.+|+...+.
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 33444555678999999999999999998753 3469999999999999999999877765 79999999865543
Q ss_pred CCCCCCCccEEEEC
Q 019692 203 KDPAYSEVRAILLD 216 (337)
Q Consensus 203 ~~~~~~~fD~IlvD 216 (337)
. .++||+|++.
T Consensus 99 ~---~~~fD~V~~~ 109 (219)
T 3jwg_A 99 R---FSGYDAATVI 109 (219)
T ss_dssp G---GTTCSEEEEE
T ss_pred c---cCCCCEEEEH
Confidence 2 2579999963
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-10 Score=103.40 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...|+ +++++++|+.+.+. .++|
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~f 185 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI----QENY 185 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC----CSCE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc----cCCc
Confidence 3344457899999999999999999886 35999999999999999999999998 89999999988765 2679
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|+|++..+
T Consensus 186 D~i~~~~~ 193 (286)
T 3m70_A 186 DFIVSTVV 193 (286)
T ss_dssp EEEEECSS
T ss_pred cEEEEccc
Confidence 99998765
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-10 Score=95.16 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=80.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCC--------CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCC--
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGK--------GKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPK-- 203 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~--------g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~-~~D~~~~~~~-- 203 (337)
+++|.+|||+|||+|..+..+++.++.. ++|+++|+++.+ ...+++++ .+|+......
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 5789999999999999999999987543 799999999842 34568888 8887654310
Q ss_pred ---CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 204 ---DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 204 ---~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.....+||+|++|+++..+|.. ..+......++..+++.+.+++++ |.++.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFR---------------------DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCH---------------------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCc---------------------ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 0001479999999865554421 112223445667889999998887 788876653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=97.11 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=63.5
Q ss_pred chhhHHHHHHhCC--CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 123 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
.+.+.+++..+.. .++.+|||+|||+|..+..++... +|+|+|+|+.+++. ..+++++++|+.+.
T Consensus 7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~ 73 (170)
T 3q87_B 7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCS 73 (170)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTT
T ss_pred CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhh
Confidence 3444455555655 678899999999999999888752 99999999999987 35688999999873
Q ss_pred CCCCCCCCCccEEEECCCCC
Q 019692 201 DPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCS 220 (337)
.. .++||+|+++||..
T Consensus 74 ~~----~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 74 IN----QESVDVVVFNPPYV 89 (170)
T ss_dssp BC----GGGCSEEEECCCCB
T ss_pred cc----cCCCCEEEECCCCc
Confidence 22 15799999999954
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=107.43 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.5
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++... ++|
T Consensus 59 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~ 132 (340)
T 2fyt_A 59 NPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV---EKV 132 (340)
T ss_dssp CGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC---SCE
T ss_pred hhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC---CcE
Confidence 344578999999999999999988885 346999999996 99999999999998 67999999998875332 579
Q ss_pred cEEEECCC
Q 019692 211 RAILLDPS 218 (337)
Q Consensus 211 D~IlvDpP 218 (337)
|+|++++.
T Consensus 133 D~Ivs~~~ 140 (340)
T 2fyt_A 133 DVIISEWM 140 (340)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCc
Confidence 99999863
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=102.24 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=90.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++.+|||+|||+|..+..++.. + .+|+++|+++.+++.+++|++.+|+. +++..+|+.+..+ ..+||+|+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g-~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~----~~~fD~Vv 189 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--G-GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP----FGPFDLLV 189 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG----GCCEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--C-CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc----CCCCCEEE
Confidence 567899999999999999988875 2 39999999999999999999999987 8999998876321 15799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
++++.. ....++..+.+++++ |.++.+... .+..+.+...+
T Consensus 190 ~n~~~~-----------------------------------~~~~~l~~~~~~LkpgG~lils~~~---~~~~~~v~~~l 231 (254)
T 2nxc_A 190 ANLYAE-----------------------------------LHAALAPRYREALVPGGRALLTGIL---KDRAPLVREAM 231 (254)
T ss_dssp EECCHH-----------------------------------HHHHHHHHHHHHEEEEEEEEEEEEE---GGGHHHHHHHH
T ss_pred ECCcHH-----------------------------------HHHHHHHHHHHHcCCCCEEEEEeec---cCCHHHHHHHH
Confidence 876510 014677788787777 777765433 23455555555
Q ss_pred chhcCCCcEEec
Q 019692 294 PIAMSFGFQLAT 305 (337)
Q Consensus 294 ~~~~~~~~~~~~ 305 (337)
+ ..||++..
T Consensus 232 ~---~~Gf~~~~ 240 (254)
T 2nxc_A 232 A---GAGFRPLE 240 (254)
T ss_dssp H---HTTCEEEE
T ss_pred H---HCCCEEEE
Confidence 3 35777753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=98.17 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=95.7
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
-..++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...+ +++++++|+.++++
T Consensus 39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~-- 111 (216)
T 3ofk_A 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFST-- 111 (216)
T ss_dssp HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCC--
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCC--
Confidence 34455556777788999999999999999988763 589999999999999999987654 79999999998872
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC-----
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC----- 278 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC----- 278 (337)
.++||+|++.. ++..-+ +++ ....+|..+.+++++ |.++++|.
T Consensus 112 --~~~fD~v~~~~------~l~~~~----------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 160 (216)
T 3ofk_A 112 --AELFDLIVVAE------VLYYLE----------------DMT-------QMRTAIDNMVKMLAPGGHLVFGSARDATC 160 (216)
T ss_dssp --SCCEEEEEEES------CGGGSS----------------SHH-------HHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred --CCCccEEEEcc------HHHhCC----------------CHH-------HHHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence 26799999752 221110 111 124678888888887 77777652
Q ss_pred -CCCcccCHHHHHHHhc
Q 019692 279 -SIHQVENEDVIKSVLP 294 (337)
Q Consensus 279 -S~~~~ENe~vv~~~l~ 294 (337)
++....+.+.+..++.
T Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (216)
T 3ofk_A 161 RRWGHVAGAETVITILT 177 (216)
T ss_dssp HHTTCSCCHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHH
Confidence 3344556666666664
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=100.16 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=85.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+ ++.++++|+.+++.. ++||+|+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~----~~fD~v~ 114 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE----EKYDMVV 114 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC----SCEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC----CCceEEE
Confidence 5678999999999999999999985 45799999999999999999987665 799999999887643 5799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
+... +..- +.. ....+|+++.+++++ |.++.++....
T Consensus 115 ~~~~------l~~~-----------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 115 SALS------IHHL-----------------EDE-------DKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp EESC------GGGS-----------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EeCc------cccC-----------------CHH-------HHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 8643 1110 011 113678888888887 78887765543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=98.47 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=82.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..+ .+++++++|+.+++.. .++||+|++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---~~~~D~v~~ 109 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE---DKTFDYVIF 109 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC---TTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC---CCcEEEEEE
Confidence 458899999999999999888862 389999999999999999999887 6799999999886532 257999998
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.++.. .. ...+ ...+|+++.+++++ |.++..++.
T Consensus 110 ~~~~~---~~--------------------~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIV---HF--------------------EPLE-------LNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGG---GC--------------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchH---hC--------------------CHHH-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 86511 00 1111 24678888887776 788777654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=108.56 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=88.1
Q ss_pred hcCeEEEechhhHHHHHHhC----CCCCCeEEeecCCchhHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHhCC-
Q 019692 115 VNGCVFLQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGA- 187 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~----~~~g~~VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~~~~l~~l~~~~~~~g~- 187 (337)
+.|.|+-...-+.+++.++. +.++.+|+|.|||+|++.+.++..+. +...++|+|+++.+++.++.|+...|+
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 45778777777888888877 56889999999999999988888864 246899999999999999999999998
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCc
Q 019692 188 -ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 188 -~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
.++.+.++|....+.......+||+|+.+||.++.
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~ 310 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAK 310 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCC
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCc
Confidence 46899999987663111113679999999999853
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=106.93 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=84.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-----C-C--CcEEEEeccCCCC------
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-----G-A--ANIEVLHGDFLNL------ 200 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-----g-~--~~v~~~~~D~~~~------ 200 (337)
+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.++++++.+ | . .+|+++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 467899999999999999999998766689999999999999999998876 4 3 5799999999886
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+.. .++||+|+++.. +..-+| ...+|+.+.+++++ |.++.++
T Consensus 161 ~~~---~~~fD~V~~~~~------l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVP---DSSVDIVISNCV------CNLSTN--------------------------KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCC---TTCEEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC---CCCEEEEEEccc------hhcCCC--------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 322 257999998643 211111 14788888888887 7777764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-10 Score=105.88 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=86.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++.. ++
T Consensus 44 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~----~~ 116 (348)
T 2y1w_A 44 QNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----EQ 116 (348)
T ss_dssp HTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SC
T ss_pred hccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC----Cc
Confidence 3345568999999999999999988875 456999999996 88999999999998 5799999999887532 47
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
||+|+++++..... ..+ ....+..+.+++++ |.++.+++++.
T Consensus 117 ~D~Ivs~~~~~~~~----~~~--------------------------~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (348)
T 2y1w_A 117 VDIIISEPMGYMLF----NER--------------------------MLESYLHAKKYLKPSGNMFPTIGDVH 159 (348)
T ss_dssp EEEEEECCCBTTBT----TTS--------------------------HHHHHHHGGGGEEEEEEEESCEEEEE
T ss_pred eeEEEEeCchhcCC----hHH--------------------------HHHHHHHHHhhcCCCeEEEEecCcEE
Confidence 99999987733211 000 13556777788887 77776666654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=93.44 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=82.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++ +|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..+. ++.++.+|+.+.+.. .++||+|+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~~fD~v~ 99 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIV---ADAWEGIV 99 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCC---TTTCSEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCC---cCCccEEE
Confidence 4567 9999999999999888875 36999999999999999999998887 799999999887533 25799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+... .+ ..+ ....+|+.+.+++++ |.++.++.+.
T Consensus 100 ~~~~-----~~--------------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 100 SIFC-----HL--------------------PSS-------LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp EECC-----CC--------------------CHH-------HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred EEhh-----cC--------------------CHH-------HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 7311 11 111 235788889998887 7777776543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.5e-10 Score=100.06 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=72.9
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHH------HHHHHHHHHHHhCC-CcEEEEecc
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE------RVRRLKDTIKLSGA-ANIEVLHGD 196 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~------~l~~l~~~~~~~g~-~~v~~~~~D 196 (337)
.....+...+.+.++.+|||+|||+|..+..++...++.++|+++|+++. +++.++++++..|+ .+|+++.+|
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 33344556677889999999999999999999998655589999999997 99999999998887 579999998
Q ss_pred -CC--CCCCCCCCCCCccEEEECCC
Q 019692 197 -FL--NLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 197 -~~--~~~~~~~~~~~fD~IlvDpP 218 (337)
.. .++.. .++||+|++...
T Consensus 110 ~~~~~~~~~~---~~~fD~v~~~~~ 131 (275)
T 3bkx_A 110 NLSDDLGPIA---DQHFDRVVLAHS 131 (275)
T ss_dssp CTTTCCGGGT---TCCCSEEEEESC
T ss_pred hhhhccCCCC---CCCEEEEEEccc
Confidence 32 22211 257999997544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-10 Score=106.58 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=85.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.+++.. .++||+|
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I 137 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELP---VEKVDII 137 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SSCEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCC---CCceEEE
Confidence 457899999999999999999886 45699999999 59999999999999876 99999999988543 2679999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
++++...... ...+ ...++..+.+++++ |.++.+.+++.
T Consensus 138 is~~~~~~l~---~~~~--------------------------~~~~l~~~~r~LkpgG~li~~~~~~~ 177 (349)
T 3q7e_A 138 ISEWMGYCLF---YESM--------------------------LNTVLHARDKWLAPDGLIFPDRATLY 177 (349)
T ss_dssp EECCCBBTBT---BTCC--------------------------HHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred EEcccccccc---Cchh--------------------------HHHHHHHHHHhCCCCCEEccccceEE
Confidence 9987533211 0000 13567777777776 77776655543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=101.69 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=89.3
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 206 (337)
.+...+.+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++.+|+.+++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----- 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----
Confidence 33444667889999999999999999999876 359999999999999999999998885 4999999998764
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ 282 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~ 282 (337)
++||+|++.-. +..-+ . .....+|+.+.+++++ |.++.++.+...
T Consensus 154 -~~fD~v~~~~~------l~~~~-----------------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 -EPVDRIVSIEA------FEHFG-----------------H-------ENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp -CCCSEEEEESC------GGGTC-----------------G-------GGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred -CCcCEEEEeCh------HHhcC-----------------H-------HHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 46999997532 21100 0 0125678888887776 888887766543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=100.31 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH----HHhCCCcEEEEeccCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI----KLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~----~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+.++++.+|||+|||+|..+..++... +..+|+++|+++.+++.+.+++ ...+..+++++++|+.+++...
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~-- 97 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS-- 97 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC--
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC--
Confidence 34557889999999999999999999974 4579999999999888654433 3467778999999999876532
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
.. |.|++..+... .......-+..+|+.+.+++++ |.++++
T Consensus 98 -~~-d~v~~~~~~~~---------------------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 98 -GV-GELHVLMPWGS---------------------------LLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp -CE-EEEEEESCCHH---------------------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred -CC-CEEEEEccchh---------------------------hhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 34 77775554111 0001111125778888888887 666553
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=106.27 Aligned_cols=113 Identities=13% Similarity=0.014 Sum_probs=86.2
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.++.+|||+|||+|..+..++....+..+|+++|+++.+++.++++++..|+.+ |+++++|+.+++.. ++||+
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~ 190 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYDL 190 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEEE
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeEE
Confidence 45789999999999999999886434456799999999999999999999988865 99999999987632 57999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|++..+ +..-+ ++ ..+..+++.+.+.+++ |.++.++.+
T Consensus 191 v~~~~~------~~~~~----------------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 191 LTSNGL------NIYEP----------------DD-------ARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp EECCSS------GGGCC----------------CH-------HHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEECCh------hhhcC----------------CH-------HHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 996543 11111 11 1134578888888887 777776633
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-11 Score=108.85 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=72.6
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCH-------HHHHHHHHHHHHhCCCc-EEEEeccC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK-------ERVRRLKDTIKLSGAAN-IEVLHGDF 197 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~-------~~l~~l~~~~~~~g~~~-v~~~~~D~ 197 (337)
..+...++.+.++.+|||+|||+|..++.+|.. .++|+++|+++ .+++.+++|++.+|+.+ |+++++|+
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 345555566667899999999999999999985 36899999999 99999999999888855 99999998
Q ss_pred CCCCCCCCCC--CCccEEEECCCCC
Q 019692 198 LNLDPKDPAY--SEVRAILLDPSCS 220 (337)
Q Consensus 198 ~~~~~~~~~~--~~fD~IlvDpPCS 220 (337)
.++.+..+ . .+||+|++|||..
T Consensus 149 ~~~l~~~~-~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 149 AEQMPALV-KTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHH-HHHCCCSEEEECCCC-
T ss_pred HHHHHhhh-ccCCCccEEEECCCCC
Confidence 87532110 0 3699999999853
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=98.70 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 207 (337)
+...+.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++++..|+. ++.++.+|+.+++
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------ 127 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------ 127 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------
Confidence 34446678899999999999999999996652 59999999999999999999988874 6999999997664
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++||+|++.- ++..-++ .....+|+.+.+++++ |.++.++...
T Consensus 128 ~~fD~v~~~~------~l~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 128 EPVDRIVSIG------AFEHFGH------------------------ERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CCCSEEEEES------CGGGTCT------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CCeeEEEEeC------chhhcCh------------------------HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 4699999642 2211000 0024678888887776 7887766543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=102.56 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=72.9
Q ss_pred hhHHHHHHhCCCCC--CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC--------C-CcEEEE
Q 019692 125 ASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--------A-ANIEVL 193 (337)
Q Consensus 125 ss~l~~~~l~~~~g--~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g--------~-~~v~~~ 193 (337)
....+..++.+++| .+|||+|||+|..++.+|.. .++|+++|+++.+++.+++++++.+ + .+|+++
T Consensus 74 ~~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp GGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred hHHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 34555667777778 99999999999999999997 3589999999999888888876542 3 469999
Q ss_pred eccCCCCCCCCCCCCCccEEEECCCCC
Q 019692 194 HGDFLNLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 194 ~~D~~~~~~~~~~~~~fD~IlvDpPCS 220 (337)
++|+.++..... .+||+|++|||..
T Consensus 151 ~~D~~~~L~~~~--~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 151 HASSLTALTDIT--PRPQVVYLDPMFP 175 (258)
T ss_dssp ESCHHHHSTTCS--SCCSEEEECCCCC
T ss_pred ECCHHHHHHhCc--ccCCEEEEcCCCC
Confidence 999887654332 3699999999953
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-10 Score=104.55 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=68.5
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+. +|+++.+|+.+++.. .++||
T Consensus 34 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D 107 (328)
T 1g6q_1 34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLP---FPKVD 107 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCS---SSCEE
T ss_pred HhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCC---CCccc
Confidence 34457899999999999999988875 44699999999 6999999999999985 499999999887533 25799
Q ss_pred EEEECCCCC
Q 019692 212 AILLDPSCS 220 (337)
Q Consensus 212 ~IlvDpPCS 220 (337)
+|+++++..
T Consensus 108 ~Ivs~~~~~ 116 (328)
T 1g6q_1 108 IIISEWMGY 116 (328)
T ss_dssp EEEECCCBT
T ss_pred EEEEeCchh
Confidence 999998743
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=96.84 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=86.5
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
|......+...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++ ..++.++.+|+.+++
T Consensus 18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~ 91 (259)
T 2p35_A 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK 91 (259)
T ss_dssp GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC
Confidence 33334444555667789999999999999999999886 357899999999999999887 357899999998876
Q ss_pred CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 202 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
. ..+||+|++... +..-+| ...+|.++.+++++ |.++.++..
T Consensus 92 -~---~~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 92 -P---AQKADLLYANAV------FQWVPD--------------------------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp -C---SSCEEEEEEESC------GGGSTT--------------------------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred -c---cCCcCEEEEeCc------hhhCCC--------------------------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 2 257999997432 111001 24678888888887 777777643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-10 Score=99.37 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=85.3
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+.+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .+++++++|+.+++... ++
T Consensus 48 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~---~~ 120 (266)
T 3ujc_A 48 LSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPE---NN 120 (266)
T ss_dssp TTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCT---TC
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCC---Cc
Confidence 344567789999999999999999999976 479999999999999999887654 67999999998875432 67
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
||+|++... +.. .++. ....+|+.+.+++++ |.++.++.+
T Consensus 121 fD~v~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 121 FDLIYSRDA------ILA-----------------LSLE-------NKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp EEEEEEESC------GGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEeHHHH------HHh-----------------cChH-------HHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999997422 211 0111 125778888888887 777776543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-10 Score=102.21 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=57.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeC-CHHHHHHHHHHH-----HHhCCC-----cEEEEeccCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL-NKERVRRLKDTI-----KLSGAA-----NIEVLHGDFLNLDPK 203 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~-~~~~l~~l~~~~-----~~~g~~-----~v~~~~~D~~~~~~~ 203 (337)
..+|.+|||+|||+|..+..++.. +.++|+++|+ ++.+++.+++|+ +.+|+. +|.+...|..+....
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 357889999999999999988875 3459999999 899999999999 666654 688886665442111
Q ss_pred CC---CCCCccEEEE-CCC
Q 019692 204 DP---AYSEVRAILL-DPS 218 (337)
Q Consensus 204 ~~---~~~~fD~Ilv-DpP 218 (337)
.. ...+||+|++ |+.
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl 173 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLL 173 (281)
T ss_dssp HHHHHSCSSBSEEEEESCC
T ss_pred HHhhccCCCCCEEEEeCcc
Confidence 00 0257999987 554
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=110.89 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=88.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeccCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~------g~~~v~~~~~D~~~~~~~ 203 (337)
...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.++++++.. |..+|+++++|+.+++..
T Consensus 714 LelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~ 793 (950)
T 3htx_A 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR 793 (950)
T ss_dssp HHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT
T ss_pred HHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc
Confidence 44455568999999999999999999886434469999999999999999987643 667899999999998764
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
. +.||+|++. +++..- .. .....+++.+.+++++|.++.+|..
T Consensus 794 d---~sFDlVV~~------eVLeHL-----------------~d-------p~l~~~L~eI~RvLKPG~LIISTPN 836 (950)
T 3htx_A 794 L---HDVDIGTCL------EVIEHM-----------------EE-------DQACEFGEKVLSLFHPKLLIVSTPN 836 (950)
T ss_dssp S---CSCCEEEEE------SCGGGS-----------------CH-------HHHHHHHHHHHHTTCCSEEEEEECB
T ss_pred c---CCeeEEEEe------CchhhC-----------------Ch-------HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3 679999972 233211 01 1124578888889999977776653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-09 Score=103.12 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=68.8
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHH-------HHHHHHhC--CCcEEEEeccCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL-------KDTIKLSG--AANIEVLHGDFLN 199 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l-------~~~~~~~g--~~~v~~~~~D~~~ 199 (337)
+...+.+.+|++|||+|||+|..+..+|... +..+|+|+|+++.+++.+ +++++..| ..+|+++++|...
T Consensus 234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 3455678899999999999999999999976 346899999999998888 99999999 5689999986442
Q ss_pred CCCCC-CCCCCccEEEECCC
Q 019692 200 LDPKD-PAYSEVRAILLDPS 218 (337)
Q Consensus 200 ~~~~~-~~~~~fD~IlvDpP 218 (337)
..... .....||+|+++..
T Consensus 313 ~~~~~~~~~~~FDvIvvn~~ 332 (433)
T 1u2z_A 313 DNNRVAELIPQCDVILVNNF 332 (433)
T ss_dssp TCHHHHHHGGGCSEEEECCT
T ss_pred cccccccccCCCCEEEEeCc
Confidence 11000 00257999998644
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=94.20 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=83.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCCCCCCCCCCc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-----~v~~~~~D~~~~~~~~~~~~~f 210 (337)
+++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..++. ++.++.+|+..++... ++|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~ 102 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---SSF 102 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---TCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---Cce
Confidence 57899999999999999999886 469999999999999999999887763 6899999998876432 679
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|+|++... +..-+ +++. ...+|+.+.+++++ |.++.++..
T Consensus 103 D~v~~~~~------l~~~~----------------~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 103 DFAVMQAF------LTSVP----------------DPKE-------RSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp EEEEEESC------GGGCC----------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eEEEEcch------hhcCC----------------CHHH-------HHHHHHHHHHHcCCCeEEEEEECC
Confidence 99998533 21111 1111 23678888887776 777777653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=94.81 Aligned_cols=130 Identities=10% Similarity=-0.013 Sum_probs=89.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++.. ..++.++.+|+.+++.. .++||+|+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~---~~~fD~v~ 112 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLG-G-FPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFP---SASFDVVL 112 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHT-T-CCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSC---SSCEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCC---CCcccEEE
Confidence 367899999999999999999886 2 23899999999999999998764 35799999999887533 25799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
++++....-. ...+. | . ...+ .......+|+.+.+++++ |.++.++.+. ......++
T Consensus 113 ~~~~~~~~~~--~~~~~-~---------~-~~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~-----~~~~~~~~ 170 (215)
T 2pxx_A 113 EKGTLDALLA--GERDP-W---------T-VSSE----GVHTVDQVLSEVSRVLVPGGRFISMTSAA-----PHFRTRHY 170 (215)
T ss_dssp EESHHHHHTT--TCSCT-T---------S-CCHH----HHHHHHHHHHHHHHHEEEEEEEEEEESCC-----HHHHHHHH
T ss_pred ECcchhhhcc--ccccc-c---------c-cccc----hhHHHHHHHHHHHHhCcCCCEEEEEeCCC-----cHHHHHHH
Confidence 8776322110 01000 0 0 0111 223346778888888876 8888887763 34445555
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=100.08 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCCC---CCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPKD---PAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~~~v~~~~~D~~~~~~~~---~~~~~ 209 (337)
..++.+|||+|||+|..+..++..+.+..+|+|+|+++.+++.++++++.. +..+++++++|+.+++... ...++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 357899999999999999999987656689999999999999999999987 3467999999998876332 00157
Q ss_pred ccEEEEC
Q 019692 210 VRAILLD 216 (337)
Q Consensus 210 fD~IlvD 216 (337)
||+|++.
T Consensus 114 fD~V~~~ 120 (299)
T 3g5t_A 114 IDMITAV 120 (299)
T ss_dssp EEEEEEE
T ss_pred eeEEeHh
Confidence 9999974
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-10 Score=106.54 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=68.6
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++... ++||
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D 131 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP----EKVD 131 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS----SCEE
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC----Ccce
Confidence 45578999999999999999999886 34599999999 99999999999999865 99999999887643 5799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++++.
T Consensus 132 ~Iv~~~~ 138 (376)
T 3r0q_C 132 VIISEWM 138 (376)
T ss_dssp EEEECCC
T ss_pred EEEEcCh
Confidence 9999874
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-10 Score=106.31 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeC----CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL----NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~----~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~ 209 (337)
+++|.+|||+|||||++|..+++. ++|+|+|+ ++.+++.+ ..+..|.++|+++.+ |+..++. .+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~~-----~~ 148 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIPP-----ER 148 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSCC-----CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCCc-----CC
Confidence 467899999999999999998875 57999999 55443211 112233457999999 8887642 47
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY 275 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY 275 (337)
||+|++|.+|+ +|.. ..+... +..+|..+.+++++ |.++.
T Consensus 149 fD~V~sd~~~~-~g~~--------------------~~d~~~-----~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 149 CDTLLCDIGES-SPNP--------------------TVEAGR-----TLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp CSEEEECCCCC-CSSH--------------------HHHHHH-----HHHHHHHHHHHCCTTCEEEE
T ss_pred CCEEEECCccc-cCcc--------------------hhhHHH-----HHHHHHHHHHHhCCCCEEEE
Confidence 99999999987 5531 111111 11477778787877 76664
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=99.65 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=81.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+ .+++++.+|+.+++... .++||+|++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~~ 142 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL--ETPVDLILF 142 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC--SSCEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc--CCCceEEEE
Confidence 3789999999999999999886 46999999999999999999999988 57999999998876322 267999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
... +..-+| ...+|+.+.+++++ |.++.++.
T Consensus 143 ~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 143 HAV------LEWVAD--------------------------PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ESC------GGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred Cch------hhcccC--------------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 532 211111 14678888888887 77776654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=91.01 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=92.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ .++.++++|+.+.+.. .++||+|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---~~~~D~i~ 112 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQIS---ETDFDLIV 112 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCC---CCCEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCC---CCceeEEE
Confidence 467899999999999999999886 369999999999999998875 3588999999876533 25799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
+++++-.. + +.+. ...+|..+.+++++ |.++.++.+. ..-....+...+
T Consensus 113 ~~~~~~~~--~--------------------~~~~-------~~~~l~~~~~~l~~~G~l~~~~~~~-~~~~~~~~~~~l 162 (195)
T 3cgg_A 113 SAGNVMGF--L--------------------AEDG-------REPALANIHRALGADGRAVIGFGAG-RGWVFGDFLEVA 162 (195)
T ss_dssp ECCCCGGG--S--------------------CHHH-------HHHHHHHHHHHEEEEEEEEEEEETT-SSCCHHHHHHHH
T ss_pred ECCcHHhh--c--------------------ChHH-------HHHHHHHHHHHhCCCCEEEEEeCCC-CCcCHHHHHHHH
Confidence 98653210 0 1111 25678888887777 6666655443 223445555555
Q ss_pred chhcCCCcEEecCCCCCC
Q 019692 294 PIAMSFGFQLATPFPNGT 311 (337)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~ 311 (337)
+ ..||++......|.
T Consensus 163 ~---~~Gf~~~~~~~~~~ 177 (195)
T 3cgg_A 163 E---RVGLELENAFESWD 177 (195)
T ss_dssp H---HHTEEEEEEESSTT
T ss_pred H---HcCCEEeeeecccc
Confidence 3 34788765444444
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=97.29 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=85.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...+. .++.++++|+.+.+... .++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v 137 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI 137 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC--CCCcCEE
Confidence 467899999999999999988875 346999999999999999999998877 46999999998875421 2579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++.-. +..- + .+. .....+|+.+.+++++ |.++.+++.
T Consensus 138 ~~~~~------l~~~----~-----------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 138 SSQFS------FHYA----F-----------STS-------ESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEESC------GGGG----G-----------SSH-------HHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EECch------hhhh----c-----------CCH-------HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 97632 1100 0 011 1235688888888887 788887755
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-09 Score=92.05 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=84.0
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
+...+....++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++ .+..++.++++|+.++. . .
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-~---~ 105 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-P---D 105 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC-C---S
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC-C---C
Confidence 3333334678889999999999999999987 3699999999999999988 67778999999998872 2 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++||+|++.- ++..- .. .....+|+.+.+++++ |.++.++.+.
T Consensus 106 ~~~D~v~~~~------~l~~~-----------------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 106 RQWDAVFFAH------WLAHV-----------------PD-------DRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SCEEEEEEES------CGGGS-----------------CH-------HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CceeEEEEec------hhhcC-----------------CH-------HHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 6899999742 22110 11 1135678888888776 8888887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=97.81 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----------------hCCCcEEEEecc
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL-----------------SGAANIEVLHGD 196 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~-----------------~g~~~v~~~~~D 196 (337)
.+.++.+|||+|||+|..+..||+. +..|+|+|+|+.+++.++++... ....+|+++++|
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D 141 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 141 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence 4467899999999999999999986 35899999999999999776531 012469999999
Q ss_pred CCCCCCCCCCCCCccEEEE
Q 019692 197 FLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+++... .++||+|+.
T Consensus 142 ~~~l~~~~--~~~FD~V~~ 158 (252)
T 2gb4_A 142 IFDLPRAN--IGKFDRIWD 158 (252)
T ss_dssp TTTGGGGC--CCCEEEEEE
T ss_pred cccCCccc--CCCEEEEEE
Confidence 99887542 257999995
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=98.74 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
-...++..+++.++++|||+|||+|..|..+++. .++|+|+|+|+.+++.+++++.. ..+++++++|+.+++...
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHH
Confidence 4455667788899999999999999999999876 37999999999999999999865 467999999999886432
Q ss_pred C-CCCCccEEEECCCC
Q 019692 205 P-AYSEVRAILLDPSC 219 (337)
Q Consensus 205 ~-~~~~fD~IlvDpPC 219 (337)
. ...+|| |+.++|.
T Consensus 92 ~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPY 106 (255)
T ss_dssp SCCSSCEE-EEEECCH
T ss_pred hccCCCeE-EEecCCc
Confidence 1 013577 9999994
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=96.02 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=81.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++. ..++.++.+|+.+++... ++
T Consensus 37 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~---~~ 108 (253)
T 3g5l_A 37 KKMLPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP---DA 108 (253)
T ss_dssp HTTCCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT---TC
T ss_pred HHhhhccCCCEEEEECCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC---CC
Confidence 34455567899999999999999999886 23499999999999999998865 457999999998876432 67
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
||+|++.-. +..-++ ...+|+.+.+++++ |.++.++.
T Consensus 109 fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 109 YNVVLSSLA------LHYIAS--------------------------FDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEchh------hhhhhh--------------------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999997432 211001 24678888888887 77777643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-10 Score=102.92 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=81.7
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C---------CCcEEEEeccCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---------AANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g---------~~~v~~~~~D~~~~~~~~ 204 (337)
..+.+|||+|||+|+.+..+++. +..+|+++|+|+.+++.+++++ .. + -.+++++.+|+.+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 45789999999999999998886 4579999999999999999998 44 3 24699999998664322
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.++||+|++|+|+.. |. +.. + .+.++++.+.+.+++ |.++..+++.
T Consensus 150 --~~~fD~Ii~d~~~~~-~~----~~~---------------------l--~~~~~l~~~~~~L~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 150 --NRGFDVIIADSTDPV-GP----AKV---------------------L--FSEEFYRYVYDALNNPGIYVTQAGSV 196 (281)
T ss_dssp --CCCEEEEEEECCCCC-------------------------------T--TSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred --cCCeeEEEECCCCCC-Cc----chh---------------------h--hHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 157999999999531 11 000 0 124667777777776 7887776654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=94.25 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++. .+++++++|+.+++.. ++||+
T Consensus 41 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~----~~fD~ 109 (220)
T 3hnr_A 41 VVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP----TSIDT 109 (220)
T ss_dssp HHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC----SCCSE
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC----CCeEE
Confidence 34457899999999999999999886 4699999999999999998865 4688999999887643 57999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|++... +..-+ .++ +..+|+.+.+.+++ |.++.++...
T Consensus 110 v~~~~~------l~~~~----------------~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 110 IVSTYA------FHHLT----------------DDE--------KNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp EEEESC------GGGSC----------------HHH--------HHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred EEECcc------hhcCC----------------hHH--------HHHHHHHHHHhcCCCCEEEEEeccc
Confidence 997532 21100 011 14578888887776 7887776443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=92.02 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=81.3
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++.. ...+|+++|+++.+++.++++++..+ .++.++++|+.+++... ++||+|
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~---~~fD~v 93 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKD---ESMSFV 93 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCT---TCEEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCC---CceeEE
Confidence 3467899999999999875554443 24699999999999999999998877 46889999998875332 579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++... +.. .+.+ ....+++.+.+.+++ |.++.++.+.
T Consensus 94 ~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 94 YSYGT------IFH-----------------MRKN-------DVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp EECSC------GGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEcCh------HHh-----------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 97422 110 0111 135677888887776 8888887764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=95.09 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=90.5
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+|||+|||+|..+..++. ...+|+++|+++.+++.+++++...+. .+++++.+|+.++++. .+||+|++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT----ELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS----SCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC----CCeeEEEEC
Confidence 45999999999999988865 357899999999999999999887543 5699999999987633 479999974
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc-------cCHHH
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV-------ENEDV 288 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~-------ENe~v 288 (337)
.. +..- .++ ....+|+.+.+++++ |.++..+.+.... -..+.
T Consensus 140 ~~------l~~~-----------------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
T 3lcc_A 140 VF------FCAI-----------------EPE-------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVST 189 (235)
T ss_dssp SS------TTTS-----------------CGG-------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHH
T ss_pred hh------hhcC-----------------CHH-------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHH
Confidence 32 1110 000 124678888887777 7777665544322 24566
Q ss_pred HHHHhchhcCCCcEEec
Q 019692 289 IKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~ 305 (337)
+...++ ..||+.+.
T Consensus 190 ~~~~l~---~~Gf~~~~ 203 (235)
T 3lcc_A 190 FEEVLV---PIGFKAVS 203 (235)
T ss_dssp HHHHHG---GGTEEEEE
T ss_pred HHHHHH---HcCCeEEE
Confidence 777774 45787753
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=95.25 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ ..+..++.++.+|+.+++..+ ++||+|
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~---~~fD~v 108 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPD---ESVHGV 108 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCT---TCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCC---CCeeEE
Confidence 5678899999999999999988875 479999999999999999988 444567999999998876332 579999
Q ss_pred EEC
Q 019692 214 LLD 216 (337)
Q Consensus 214 lvD 216 (337)
++.
T Consensus 109 ~~~ 111 (263)
T 2yqz_A 109 IVV 111 (263)
T ss_dssp EEE
T ss_pred EEC
Confidence 974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=104.18 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=64.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+|.+|||+|||+|..++.+|+. +..+|+|||.++ +++.++++++.+|+.+ |+++++|++++... ++||+|+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~Dviv 154 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVDAIV 154 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----ccccEEE
Confidence 36899999999999988766664 456999999996 8899999999999865 99999999887533 5799999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.+.-
T Consensus 155 sE~~ 158 (376)
T 4hc4_A 155 SEWM 158 (376)
T ss_dssp CCCC
T ss_pred eecc
Confidence 8753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=98.23 Aligned_cols=83 Identities=10% Similarity=0.026 Sum_probs=60.6
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KD 204 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~--~~ 204 (337)
..+...+.+.+|.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.++++++.. ++..++.++.. ..
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK 105 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc
Confidence 34455677889999999999999999999885 369999999999999999987654 12233333322 00
Q ss_pred CCCCCccEEEECCC
Q 019692 205 PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ~~~~~fD~IlvDpP 218 (337)
...++||+|+++..
T Consensus 106 ~~~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 106 ELAGHFDFVLNDRL 119 (261)
T ss_dssp GGTTCCSEEEEESC
T ss_pred ccCCCccEEEEhhh
Confidence 00257999998754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=96.76 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=92.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...+..++.++.+|+..++... ++||+|+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC---CCEEEEEEc
Confidence 68899999999999998887753 4699999999999999999988776557999999988776432 579999976
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc-----------cc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ-----------VE 284 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~-----------~E 284 (337)
-. +..- ... ....+|+.+.+++++ |.++.++..... .-
T Consensus 154 ~~------l~~~-----------------~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 203 (241)
T 2ex4_A 154 WV------IGHL-----------------TDQ-------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCR 203 (241)
T ss_dssp SC------GGGS-----------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEE
T ss_pred ch------hhhC-----------------CHH-------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccC
Confidence 32 2110 111 124678888887887 777776532211 11
Q ss_pred CHHHHHHHhchhcCCCcEEe
Q 019692 285 NEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~~~~~ 304 (337)
+.+.+..+++ ..||+++
T Consensus 204 ~~~~~~~~l~---~aGf~~~ 220 (241)
T 2ex4_A 204 DLDVVRRIIC---SAGLSLL 220 (241)
T ss_dssp BHHHHHHHHH---HTTCCEE
T ss_pred CHHHHHHHHH---HcCCeEE
Confidence 4566666664 3466664
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.92 E-value=7.2e-09 Score=92.66 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=64.2
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++++..+. ++.++++|+.+++.. .+||+|
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~v 109 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAV 109 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEE
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC----CCccEE
Confidence 3457889999999999999999885 36899999999999999999998876 589999999886532 479999
Q ss_pred EEC
Q 019692 214 LLD 216 (337)
Q Consensus 214 lvD 216 (337)
++.
T Consensus 110 ~~~ 112 (252)
T 1wzn_A 110 TMF 112 (252)
T ss_dssp EEC
T ss_pred EEc
Confidence 963
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-09 Score=96.81 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=41.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
++.+|||+|||+|..+..++...+ ..+|+|+|+++.+++.++++++..+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhh
Confidence 688999999999999999999864 4699999999999999999987654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=104.92 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=67.1
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+ ++|+++.+|+.+++.. ++||
T Consensus 154 l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~----~~fD 226 (480)
T 3b3j_A 154 HTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP----EQVD 226 (480)
T ss_dssp GGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEE
T ss_pred hhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC----CCeE
Confidence 34457899999999999999988873 456999999998 99999999999998 5799999999886422 4799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|+++++
T Consensus 227 ~Ivs~~~ 233 (480)
T 3b3j_A 227 IIISEPM 233 (480)
T ss_dssp EEECCCC
T ss_pred EEEEeCc
Confidence 9998876
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=97.90 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=85.8
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---~~v~~~~~D~~~~~~~~~ 205 (337)
....+... +.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+. .+|+++++|+.+++..
T Consensus 75 ~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 148 (299)
T 3g2m_A 75 FATRTGPV-SGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD-- 148 (299)
T ss_dssp HHHHHCCC-CSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS--
T ss_pred HHHhhCCC-CCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC--
Confidence 33444444 449999999999999999886 36899999999999999999998775 5799999999987642
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
++||.|++.. +++. . .+++ .+..+|+.+.+++++ |.++.++....
T Consensus 149 --~~fD~v~~~~-----~~~~-~----------------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 149 --KRFGTVVISS-----GSIN-E----------------LDEA-------DRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp --CCEEEEEECH-----HHHT-T----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred --CCcCEEEECC-----cccc-c----------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 6799998521 1111 0 0121 235778888888887 88888776654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-09 Score=90.71 Aligned_cols=124 Identities=21% Similarity=0.096 Sum_probs=89.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ ..++.++++|+.+++... ++||+|++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~---~~fD~v~~~~ 110 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSP---KRWAGLLAWY 110 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSC---CCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCC---CCeEEEEehh
Confidence 889999999999999999886 35899999999999999887 346899999998876332 6799999753
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCc------------cc
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQ------------VE 284 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~------------~E 284 (337)
. +..-+ .+ ....+|+.+.+++++ |.++.++..... .-
T Consensus 111 ~------l~~~~-----------------~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 160 (203)
T 3h2b_A 111 S------LIHMG-----------------PG-------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRW 160 (203)
T ss_dssp S------STTCC-----------------TT-------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEEC
T ss_pred h------HhcCC-----------------HH-------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccC
Confidence 2 21100 00 025778888888887 777776654332 12
Q ss_pred CHHHHHHHhchhcCCCcEEec
Q 019692 285 NEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~~~~~~ 305 (337)
..+.+...|+ ..||+++.
T Consensus 161 ~~~~~~~~l~---~~Gf~~~~ 178 (203)
T 3h2b_A 161 PLPELAQALE---TAGFQVTS 178 (203)
T ss_dssp CHHHHHHHHH---HTTEEEEE
T ss_pred CHHHHHHHHH---HCCCcEEE
Confidence 3556666664 45788754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=91.49 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=89.4
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++ ++.++.+|+..++ . .++||+|
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~---~~~fD~v 106 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-A---IDAYDAV 106 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-C---CSCEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-C---CCcEEEE
Confidence 4567899999999999999999886 469999999999999999887 3567888988876 2 2689999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc---------
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV--------- 283 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~--------- 283 (337)
++... +.. ...+ ....+|+.+.+++++ |.++.++......
T Consensus 107 ~~~~~------l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 156 (211)
T 3e23_A 107 WAHAC------LLH-----------------VPRD-------ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYY 156 (211)
T ss_dssp EECSC------GGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEE
T ss_pred EecCc------hhh-----------------cCHH-------HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhc
Confidence 97532 211 0111 135678888888787 7887776554332
Q ss_pred --cCHHHHHHHhchhcCCC-cEEe
Q 019692 284 --ENEDVIKSVLPIAMSFG-FQLA 304 (337)
Q Consensus 284 --ENe~vv~~~l~~~~~~~-~~~~ 304 (337)
-+.+.+...++. .| |+.+
T Consensus 157 ~~~~~~~~~~~l~~---aG~f~~~ 177 (211)
T 3e23_A 157 NYPSEEWLRARYAE---AGTWASV 177 (211)
T ss_dssp CCCCHHHHHHHHHH---HCCCSEE
T ss_pred cCCCHHHHHHHHHh---CCCcEEE
Confidence 256667777743 35 5554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.5e-09 Score=105.86 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=82.0
Q ss_pred CchhhhcCeEEEechh------hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcC-----------------------
Q 019692 110 VHPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----------------------- 160 (337)
Q Consensus 110 ~~~~~~~G~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~----------------------- 160 (337)
..++++.|+-..+..+ +..+.......++..|||.|||+|++.+.+|....
T Consensus 157 g~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~ 236 (703)
T 3v97_A 157 GDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAI 236 (703)
T ss_dssp SSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHH
T ss_pred CCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHH
Confidence 3455666664333322 22333445677899999999999999888776531
Q ss_pred ------------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 161 ------------------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 161 ------------------~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
....|+|+|+++.+++.++.|++..|+.+ |++.++|+.++..... .++||+|++|||.
T Consensus 237 w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~-~~~~d~Iv~NPPY 313 (703)
T 3v97_A 237 WQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP-KGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCT-TCCCCEEEECCCC
T ss_pred HHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccc-cCCCCEEEeCCCc
Confidence 12579999999999999999999999976 9999999988753321 1379999999997
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=93.61 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.+...+...++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++... .++.++++|+..++.. .
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~---~ 105 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP---Q 105 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC---T
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC---C
Confidence 4556677778999999999999999998886 334999999999999999887643 3699999999886532 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++||+|++... +..-++ ...+|+.+.+++++ |.++.++
T Consensus 106 ~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLA------LHYVED--------------------------VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp TCEEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEecc------ccccch--------------------------HHHHHHHHHHhcCcCcEEEEEe
Confidence 57999997432 211000 24678888887776 7777765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=95.05 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=74.3
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
+..+......++..+++.++++|||+|||+|..|..+++.. ++|+|+|+|+.+++.++++++. ..+++++++|+.
T Consensus 12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~ 86 (244)
T 1qam_A 12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDIL 86 (244)
T ss_dssp BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGG
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHH
Confidence 34444455566667778889999999999999999999873 7999999999999999998864 357999999999
Q ss_pred CCCCCCCCCCCccEEEECCCC
Q 019692 199 NLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPC 219 (337)
+++.... ..| .|+.|+|.
T Consensus 87 ~~~~~~~--~~~-~vv~nlPy 104 (244)
T 1qam_A 87 QFKFPKN--QSY-KIFGNIPY 104 (244)
T ss_dssp GCCCCSS--CCC-EEEEECCG
T ss_pred hCCcccC--CCe-EEEEeCCc
Confidence 8764321 235 68999995
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=97.54 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=81.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++... +. ++++++.+|+....... .++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeE
Confidence 46899999999999999887752 4579999999999999999998653 33 56999999987643222 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|++|+|... +. +.... ..++++.+.+.+++ |.++..+.+
T Consensus 152 Ii~d~~~~~-~~----~~~l~-----------------------~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 152 IMVDSTEPV-GP----AVNLF-----------------------TKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEESCSSCC-SC----CCCCS-----------------------TTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEECCCCCC-Cc----chhhh-----------------------HHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999998521 11 11000 13567777777776 777776554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=96.37 Aligned_cols=110 Identities=16% Similarity=0.070 Sum_probs=81.2
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...+...+.+.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.++++. +++++++|+.+++...
T Consensus 23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~- 92 (261)
T 3ege_A 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD- 92 (261)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT-
T ss_pred HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC-
Confidence 34455566778899999999999999999987 3579999999999988776553 7999999998876432
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS 279 (337)
++||+|++... +..-+| ...+|+++.+.+++|.++..++.
T Consensus 93 --~~fD~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~LkgG~~~~~~~~ 132 (261)
T 3ege_A 93 --KSVDGVISILA------IHHFSH--------------------------LEKSFQEMQRIIRDGTIVLLTFD 132 (261)
T ss_dssp --TCBSEEEEESC------GGGCSS--------------------------HHHHHHHHHHHBCSSCEEEEEEC
T ss_pred --CCEeEEEEcch------HhhccC--------------------------HHHHHHHHHHHhCCcEEEEEEcC
Confidence 67999997532 111011 14677888776666667777665
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=107.39 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=84.2
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC--------------CCEEEEEeCCHHHHHHHHH
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG--------------KGKIVACELNKERVRRLKD 180 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~--------------~g~V~avD~~~~~l~~l~~ 180 (337)
..|.|+-...-+.+++.++.++++ +|+|.|||+|++.+.++..+.. ...++|+|+++.+++.++.
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 457888888888899999998877 9999999999998887665421 3589999999999999999
Q ss_pred HHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCc
Q 019692 181 TIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 181 ~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
|+...|+. ++.+.++|....+... ..+||+|+.+||.+..
T Consensus 302 Nl~l~gi~~~i~i~~gDtL~~~~~~--~~~fD~Iv~NPPf~~~ 342 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADSFLDDQHP--DLRADFVMTNPPFNMK 342 (544)
T ss_dssp HHHHTTCCCBCCSSSCCTTTSCSCT--TCCEEEEEECCCSSCC
T ss_pred HHHHhCCCcccceeccchhcCcccc--cccccEEEECCCcCCc
Confidence 99999875 3545788876654322 2579999999998864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-09 Score=96.04 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=81.2
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
.+...+.+.++.+|||+|||+|..+..++. ..++|+++|+++.+++.+++++ .++.++.+|+.+++..
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~---- 115 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVD---- 115 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCS----
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcC----
Confidence 344566778899999999999999999988 3579999999999999998775 5688999999887642
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
++||+|++... +..-+| ...+|..+.+.+++ |.++.++..
T Consensus 116 ~~fD~v~~~~~------l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 116 KPLDAVFSNAM------LHWVKE--------------------------PEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp SCEEEEEEESC------GGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEcch------hhhCcC--------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 57999997432 111011 13677888887777 777766543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-09 Score=92.42 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++. ...++.++.+|+.+++... ++||+|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~---~~fD~v~ 121 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFEN---EQFEAIM 121 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCT---TCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCC---CCccEEE
Confidence 357899999999999999999886 468999999999999998874 3357999999999876432 6799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+... +..-++ ...+|..+.+.+++ |.++.++..
T Consensus 122 ~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 122 AINS------LEWTEE--------------------------PLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp EESC------TTSSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCh------HhhccC--------------------------HHHHHHHHHHHhCCCeEEEEEEcC
Confidence 6322 211111 13678888888877 777777643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=95.62 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCC-
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLD- 201 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~----~~v~~~~~D~~~~~- 201 (337)
..+...+...++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.+++++...+. .++.+..+|+..++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 34445555567899999999999999999886 35999999999999999998865443 35888999988765
Q ss_pred --CCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 202 --PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 202 --~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
.. .++||+|++... ++..-++.. .+. +....+|+++.+.+++ |.++.+++
T Consensus 124 ~~~~---~~~fD~V~~~g~-----~l~~~~~~~------------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 124 DVPA---GDGFDAVICLGN-----SFAHLPDSK------------GDQ-------SEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HSCC---TTCEEEEEECTT-----CGGGSCCSS------------SSS-------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccc---CCCeEEEEEcCh-----HHhhcCccc------------cCH-------HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22 257999997321 111111100 001 1235789999998887 77777665
Q ss_pred C
Q 019692 279 S 279 (337)
Q Consensus 279 S 279 (337)
+
T Consensus 177 ~ 177 (293)
T 3thr_A 177 N 177 (293)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.88 E-value=7.9e-09 Score=92.31 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=83.0
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..+...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .++.++++|+..++... ++|
T Consensus 87 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~---~~f 159 (254)
T 1xtp_A 87 ASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP---NTY 159 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCS---SCE
T ss_pred HhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCC---CCe
Confidence 33456678999999999999999988874 468999999999999999987654 57999999998875432 579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
|+|++.- ++.. .+.+ ....+|+.+.+++++ |.++.++.
T Consensus 160 D~v~~~~------~l~~-----------------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 160 DLIVIQW------TAIY-----------------LTDA-------DFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcc------hhhh-----------------CCHH-------HHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999632 1211 0111 135678888887777 77877763
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=100.43 Aligned_cols=113 Identities=18% Similarity=0.126 Sum_probs=81.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g--~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++... + ..+++++.+|+.+..... .++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc--CCCce
Confidence 456899999999999999888753 4579999999999999999998762 2 256999999987643211 25799
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+|++|++..- |. ++. ..+.++++.+.+.+++ |.++..+.+
T Consensus 192 vIi~d~~~p~-~~----~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 192 VIIVDSSDPI-GP----AET-----------------------LFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEECCCSS-SG----GGG-----------------------GSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCcCCC-Cc----chh-----------------------hhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9999986321 10 000 0025678888887776 777776544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-09 Score=87.69 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=87.4
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
.+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++ ..+++++.+| ..+ . .++||
T Consensus 12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~--~---~~~~D 77 (170)
T 3i9f_A 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI--P---DNSVD 77 (170)
T ss_dssp HHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS--C---TTCEE
T ss_pred hcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC--C---CCceE
Confidence 3456788999999999999999998874 4899999999999999888 4579999999 222 1 25799
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc------
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE------ 284 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E------ 284 (337)
+|++... +..-++ ...+|+.+.+.+++ |.++.++......+
T Consensus 78 ~v~~~~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 125 (170)
T 3i9f_A 78 FILFANS------FHDMDD--------------------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLS 125 (170)
T ss_dssp EEEEESC------STTCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGG
T ss_pred EEEEccc------hhcccC--------------------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHh
Confidence 9997533 111000 24678888887776 78887765433221
Q ss_pred ---CHHHHHHHhchhcCCCcEEec
Q 019692 285 ---NEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 285 ---Ne~vv~~~l~~~~~~~~~~~~ 305 (337)
+.+.+...+ . ||+.+.
T Consensus 126 ~~~~~~~~~~~l----~-Gf~~~~ 144 (170)
T 3i9f_A 126 IRMDEKDYMGWF----S-NFVVEK 144 (170)
T ss_dssp GCCCHHHHHHHT----T-TEEEEE
T ss_pred hhcCHHHHHHHH----h-CcEEEE
Confidence 245566666 2 888764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-09 Score=91.07 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=62.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. .+|+++|+++.+++.+++++...+ .+++++++|+.+.+.. .+||+|++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~----~~fD~v~~ 102 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP----EPVDAITI 102 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS----SCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC----CCcCEEEE
Confidence 46799999999999998887764 689999999999999999998877 4689999999876532 57999997
Q ss_pred CC
Q 019692 216 DP 217 (337)
Q Consensus 216 Dp 217 (337)
..
T Consensus 103 ~~ 104 (243)
T 3d2l_A 103 LC 104 (243)
T ss_dssp CT
T ss_pred eC
Confidence 54
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=99.39 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCc
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
...+.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.+++++... ++ .+++++.+|+.+..... .++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~f 169 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--QDAF 169 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--SSCE
T ss_pred CCCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC--CCCc
Confidence 345689999999999999998875 34579999999999999999998762 33 56999999987642221 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|+|++|+|... + +. . ...+.++++.+.+++++ |.++..+.+
T Consensus 170 D~Ii~d~~~~~-~-----~~-----------------~-----~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 170 DVIITDSSDPM-G-----PA-----------------E-----SLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEEECC---------------------------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEECCCCCC-C-----cc-----------------h-----hhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99999988321 1 00 0 01134678888888887 777766534
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-09 Score=91.91 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=80.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+. ++.++++|+.+++.. ++||+|++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~----~~fD~v~~~ 108 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN----RKFDLITCC 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS----CCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc----CCceEEEEc
Confidence 7889999999999999988876 36899999999999999999998876 689999999886532 579999974
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.- ++..-+ +++ ....+|+.+.+++++ |.++.++
T Consensus 109 ~~-----~l~~~~----------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 109 LD-----STNYII----------------DSD-------DLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp TT-----GGGGCC----------------SHH-------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred Cc-----cccccC----------------CHH-------HHHHHHHHHHHhcCCCcEEEEEe
Confidence 30 111100 111 135778899898887 6776543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.1e-09 Score=96.40 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=73.9
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 201 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~ 201 (337)
+..-...++..+++.++ +|||+|||+|..|..+++. .++|+|+|+|+++++.+++++. + .+++++++|+.+++
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~~~ 104 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALLYP 104 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGGSC
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhhCC
Confidence 33344566677888899 9999999999999999986 2689999999999999999875 2 57999999999886
Q ss_pred CCCCCCCCccEEEECCCCC
Q 019692 202 PKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 202 ~~~~~~~~fD~IlvDpPCS 220 (337)
... ...+|.|+.++|..
T Consensus 105 ~~~--~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 105 WEE--VPQGSLLVANLPYH 121 (271)
T ss_dssp GGG--SCTTEEEEEEECSS
T ss_pred hhh--ccCccEEEecCccc
Confidence 542 13589999999954
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-10 Score=101.63 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=78.6
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
+..+......++..+++.++++|||+|||+|..+..++... ++|+|+|+|+.+++.++++++ +..+++++++|+.
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~ 85 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL 85 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence 45566666777788888899999999999999999999872 799999999999999988876 3467999999999
Q ss_pred CCCCCCCCCCCccEEEECCCCCCc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~ 222 (337)
+++... .++| .|++|||...+
T Consensus 86 ~~~~~~--~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 86 QFQFPN--KQRY-KIVGNIPYHLS 106 (245)
T ss_dssp TTTCCC--SSEE-EEEEECCSSSC
T ss_pred hcCccc--CCCc-EEEEeCCcccc
Confidence 876432 1468 89999997653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-09 Score=97.22 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=72.1
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PA 206 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~ 206 (337)
+...+.+++|+.++|++||.|+.|..+++. .++|+|+|.|+.+++.+++ ++. ++++++++|+.++.... ..
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcC
Confidence 455678899999999999999999999987 5899999999999999998 644 57999999998875321 11
Q ss_pred CCCccEEEECCCCCC
Q 019692 207 YSEVRAILLDPSCSG 221 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg 221 (337)
..+||.|++|.+.|+
T Consensus 87 ~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 87 VERVDGILADLGVSS 101 (285)
T ss_dssp CSCEEEEEEECSCCH
T ss_pred CCCcCEEEeCCcccc
Confidence 357999999999885
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-09 Score=98.81 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCc
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
...+.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++..+ |+ .+|+++.+|+.++..... .++|
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~-~~~f 195 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EGSY 195 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TTCE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc-CCCc
Confidence 3457899999999999999988753 4579999999999999999998764 44 469999999876522111 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|+|++|++... +. ++. ..+..+++.+.+++++ |.++..+.+.
T Consensus 196 DlIi~d~~~p~-~~----~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~~ 238 (334)
T 1xj5_A 196 DAVIVDSSDPI-GP----AKE-----------------------LFEKPFFQSVARALRPGGVVCTQAESL 238 (334)
T ss_dssp EEEEECCCCTT-SG----GGG-----------------------GGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cEEEECCCCcc-Cc----chh-----------------------hhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 99999987211 10 000 0125678888888877 7777765443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-09 Score=97.10 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=83.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCc
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..++.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++..++ ..+++++.+|+.+..... .++|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~f 152 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTY 152 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCc
Confidence 345789999999999999988875 345799999999999999999987643 357999999987653221 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|+|++|++..- |.. .. + .+.+.++.+.+.+++ |.++..+++.
T Consensus 153 D~Ii~d~~~~~-~~~----~~-l----------------------~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 153 DVIIVDSSDPI-GPA----ET-L----------------------FNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EEEEEECCCTT-TGG----GG-G----------------------SSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred eEEEEcCCCCC-Ccc----hh-h----------------------hHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 99999987431 110 00 0 014677787777776 7888776653
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-09 Score=95.80 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.+++ ..+|.++++|+.+++..+ ++||+|++-
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~---~sfD~v~~~ 106 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPP---ASVDVAIAA 106 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCS---SCEEEEEEC
T ss_pred CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccC---CcccEEEEe
Confidence 4679999999999999999876 3689999999999987653 257999999999887543 689999962
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcc--cCHHHHHHHh
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQV--ENEDVIKSVL 293 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~--ENe~vv~~~l 293 (337)
. ++. .. +. .+.+..+.+.+++ |.++..+.+.... +-+.+++.+.
T Consensus 107 ----~--~~h-~~----------------~~----------~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 4hg2_A 107 ----Q--AMH-WF----------------DL----------DRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLY 153 (257)
T ss_dssp ----S--CCT-TC----------------CH----------HHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHHHH
T ss_pred ----e--ehh-Hh----------------hH----------HHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHHHH
Confidence 1 221 10 11 2456777777777 7887776665432 2234445443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-09 Score=90.07 Aligned_cols=73 Identities=11% Similarity=-0.070 Sum_probs=59.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.++|||+|||+|..++.++... +..+|+|+|+|+++++.+++++.++|+. ++++ .|.....+ .++||+|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~----~~~~DvVL 120 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY----KGTYDVVF 120 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT----TSEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC----CCCcChhh
Confidence 457899999999999999887764 4459999999999999999999999998 6777 45433322 25799998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 121 a 121 (200)
T 3fzg_A 121 L 121 (200)
T ss_dssp E
T ss_pred H
Confidence 5
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=94.30 Aligned_cols=111 Identities=9% Similarity=0.037 Sum_probs=74.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEeccCC------CCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA------NIEVLHGDFL------NLDPKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~------~v~~~~~D~~------~~~~~~ 204 (337)
+|.+|||+|||+|+.+..++.. +.+.|+|+|+|+.+++.|+++....+.. ++.+.+.|.. ++....
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 5889999999999866655542 3468999999999999999998877653 3677777762 221111
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ .++||+|++ .. ++.- .+ +.++ +..+|+++.+++++ |.++.+|..
T Consensus 126 ~-~~~FD~V~~----~~--~lhy----~~------------~~~~-------~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 Y-FGKFNIIDW----QF--AIHY----SF------------HPRH-------YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp C-SSCEEEEEE----ES--CGGG----TC------------STTT-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c-CCCeeEEEE----Cc--hHHH----hC------------CHHH-------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 257999984 32 1110 00 0001 24789999998887 788877653
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=93.94 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=71.3
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
.-...++..+++.++++|||+|||+|..|..++..... .++|+|+|+|+.+++.++++. ..+++++++|+.+++.
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~ 104 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDF 104 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCCh
Confidence 34455667778899999999999999999999987532 245999999999999999983 3579999999998764
Q ss_pred CCCCC-C--CccEEEECCCC
Q 019692 203 KDPAY-S--EVRAILLDPSC 219 (337)
Q Consensus 203 ~~~~~-~--~fD~IlvDpPC 219 (337)
..... . ..+.|+.++|.
T Consensus 105 ~~~~~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 105 GSIARPGDEPSLRIIGNLPY 124 (279)
T ss_dssp GGGSCSSSSCCEEEEEECCH
T ss_pred hHhcccccCCceEEEEccCc
Confidence 32100 0 24578999984
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-09 Score=92.93 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=73.5
Q ss_pred EEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019692 119 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 198 (337)
Q Consensus 119 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~ 198 (337)
|.....-...++..+.+.++++|||+|||+|..|..+++. +..+|+|+|+|+.+++.++++ +..+++++++|+.
T Consensus 13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDAS 86 (249)
T ss_dssp CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchh
Confidence 3344444555667778889999999999999999998875 347999999999999999887 3457999999999
Q ss_pred CCCCCCCCCCCccEEEECCCCC
Q 019692 199 NLDPKDPAYSEVRAILLDPSCS 220 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCS 220 (337)
+++.... ...+ .|+.++|..
T Consensus 87 ~~~~~~~-~~~~-~vv~NlPy~ 106 (249)
T 3ftd_A 87 KFPFCSL-GKEL-KVVGNLPYN 106 (249)
T ss_dssp TCCGGGS-CSSE-EEEEECCTT
T ss_pred hCChhHc-cCCc-EEEEECchh
Confidence 8864431 1233 899999964
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-09 Score=91.13 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++.. ++.++++|+.++.+ .++||+|+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~----~~~fD~v~ 108 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL----PRRYDNIV 108 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC----SSCEEEEE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc----CCcccEEE
Confidence 3568899999999999999888752 4799999999999999988643 69999999988732 25799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh-CCCCC-cEEEEEcC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL-SFPGV-ERVVYSTC 278 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~-~~~~~-G~lvYsTC 278 (337)
+.- ++..-+| ...+|+.+. +++++ |.++.++.
T Consensus 109 ~~~------~l~~~~~--------------------------~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 109 LTH------VLEHIDD--------------------------PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp EES------CGGGCSS--------------------------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Ehh------HHHhhcC--------------------------HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 632 2221111 147889999 98887 77777653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=88.59 Aligned_cols=103 Identities=17% Similarity=0.043 Sum_probs=75.3
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC---CCCCCCCC
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL---DPKDPAYS 208 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~---~~~~~~~~ 208 (337)
.+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ .++.+...|+.++ +... ..
T Consensus 47 ~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~--~~ 115 (227)
T 3e8s_A 47 AILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPV--GK 115 (227)
T ss_dssp HHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCC--CC
T ss_pred HhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccccc--CC
Confidence 344456799999999999999988876 46899999999999999877 3466777877666 2222 24
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
+||+|++..... .++ ...+|+.+.+++++ |.++.++-
T Consensus 116 ~fD~v~~~~~l~-------~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 116 DYDLICANFALL-------HQD--------------------------IIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CEEEEEEESCCC-------SSC--------------------------CHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECchhh-------hhh--------------------------HHHHHHHHHHHhCCCeEEEEEec
Confidence 599999854321 111 14678888888887 77777654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.1e-09 Score=95.65 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred hCCCCCCeEEeecC------CchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-EeccCCCCCCCCC
Q 019692 133 LAPKPGWKVLDACS------APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV-LHGDFLNLDPKDP 205 (337)
Q Consensus 133 l~~~~g~~VLDl~a------G~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~-~~~D~~~~~~~~~ 205 (337)
+.+++|++|||+|| |||+ ..+++.++..++|+|+|+++. +.+|++ +++|+.+++..
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-- 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-- 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS--
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc--
Confidence 35788999999999 7787 556667665689999999987 246778 99999876532
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+||+|++|+++...|... .+. . + . ..+...+|+.+.+++++ |.++...
T Consensus 122 --~~fD~Vvsn~~~~~~g~~~--~d~-----~-----~--~-------~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 122 --NKWDLIISDMYDPRTKHVT--KEN-----D-----S--K-------EGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp --SCEEEEEECCCCCC---CC--SCC-----C-----C--C-------CTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CcccEEEEcCCcccccccc--ccc-----c-----c--h-------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5799999998877666532 111 0 0 0 11235788899898887 7777643
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=97.22 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=82.3
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCCCCCCCCCc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g---~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..+.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++... | -.+++++.+|+.+..... .++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--CCCc
Confidence 356899999999999999888753 4579999999999999999998762 2 357999999987742211 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|+|++|++... +. ...+.. -...+.++.+.+.+++ |.++..+.+
T Consensus 153 D~Ii~d~~~~~-~~-~~~~~~-----------------------l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 153 DVVIIDLTDPV-GE-DNPARL-----------------------LYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEECCCCB-ST-TCGGGG-----------------------GSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cEEEECCCCcc-cc-cCcchh-----------------------ccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99999987432 00 000000 0024678888888887 777665444
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7e-09 Score=96.36 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=80.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
..++.+|||+|||+|+.+..+++. .+..+|+++|+|+.+++.+++++... ...+++++.+|+..+..... .++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~f 170 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP-DNTY 170 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC-TTCE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc-CCce
Confidence 356789999999999999998875 34579999999999999999988542 23569999999877643211 2579
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|+|++|++... + |.. . -.+.++++.+.+.+++ |.++..+.+
T Consensus 171 DvIi~d~~~~~-~-----~~~-----------------~-----l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 171 DVVIIDTTDPA-G-----PAS-----------------K-----LFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEEEECC-------------------------------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEECCCCcc-c-----cch-----------------h-----hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99999987321 0 000 0 0124677788887887 777665443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-08 Score=91.41 Aligned_cols=114 Identities=13% Similarity=-0.001 Sum_probs=81.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-------CCCcEEEEeccCCCCCC---CCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------GAANIEVLHGDFLNLDP---KDP 205 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-------g~~~v~~~~~D~~~~~~---~~~ 205 (337)
.++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++.... +..++.++++|+...+. -..
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 36889999999999999988873 4579999999999999999998875 44579999999988751 110
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
..++||+|++.- ++..-. .+.. ....+|.++.+.+++ |.++.+|..
T Consensus 111 ~~~~fD~V~~~~------~l~~~~---------------~~~~-------~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 111 PQMCFDICSCQF------VCHYSF---------------ESYE-------QADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTCCEEEEEEET------CGGGGG---------------GSHH-------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEec------chhhcc---------------CCHH-------HHHHHHHHHHHHhCCCcEEEEecCC
Confidence 124799999732 111000 0111 134788899998887 777776654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=87.42 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=73.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..+ +..+|+++|+++.+++.+++++ .++.++++|+.+++... ++||+|++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPG---ESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCS---SCEEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCC---CcEEEEEEc
Confidence 7899999999999888766 2238999999999999998876 56889999998876332 579999975
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.. +..-++ ...+|+.+.+++++ |.++.++..
T Consensus 103 ~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 103 TT------LEFVED--------------------------VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp SC------TTTCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Ch------hhhcCC--------------------------HHHHHHHHHHHcCCCCEEEEEecC
Confidence 32 211000 24678888888877 777777644
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-09 Score=97.72 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=54.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--eccCCCCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGAANIEVL--HGDFLNLDPKDPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~---~~~g~~~v~~~--~~D~~~~~~~~~~~~~ 209 (337)
+++|.+|||+|||||+.+..+++. ++|+|+|+++ ++..++++. +.+| .+|.++ ++|+.+++ ..+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-----~~~ 148 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME-----PFQ 148 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC-----CCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC-----CCC
Confidence 568999999999999999988875 6899999998 533222110 0011 168889 89998865 157
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
||+|++|..
T Consensus 149 fD~Vvsd~~ 157 (276)
T 2wa2_A 149 ADTVLCDIG 157 (276)
T ss_dssp CSEEEECCC
T ss_pred cCEEEECCC
Confidence 999999976
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=104.45 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=99.1
Q ss_pred cCeEEEechhhHHHHHH----hC--CCCCCeEEeecCCchhHHHHHHHHcC--CCCEEEEEeCCHHHHHHH--HHHHHH-
Q 019692 116 NGCVFLQGKASSMVAAA----LA--PKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRL--KDTIKL- 184 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~----l~--~~~g~~VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~~~~l~~l--~~~~~~- 184 (337)
.|.++....-+.+++.+ +. ..++.+|||.|||+|++.+.++..+. ....++|+|+++.+++.+ +.|+..
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 46666655555555555 32 23688999999999999999888763 135799999999999999 666554
Q ss_pred ---hCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHH--------
Q 019692 185 ---SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKL-------- 253 (337)
Q Consensus 185 ---~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-------- 253 (337)
.|+.+..+...|+....... ..+||+|+.|||..+...... ...+...++
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~~--~~kFDVVIgNPPYg~~~~~~~-----------------e~kd~~~r~~~g~p~~p 434 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPED--FANVSVVVMNPPYVSGVTDPA-----------------IKRKFAHKIIQLTGNRP 434 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGGG--GTTEEEEEECCBCCSSCCCHH-----------------HHHHHHHHHHHHHSSCC
T ss_pred hhhcCCCcceEEecchhcccccc--cCCCCEEEECCCccccccchh-----------------hhhhHHHHhhhhccccc
Confidence 24444456667776543221 357999999999865321100 000001111
Q ss_pred ------HHHHHHHHHHHhCCCCC-cEEEEEcC-CCCccc--CHHHHHHHh
Q 019692 254 ------SAFQKKALRHALSFPGV-ERVVYSTC-SIHQVE--NEDVIKSVL 293 (337)
Q Consensus 254 ------~~~Q~~lL~~A~~~~~~-G~lvYsTC-S~~~~E--Ne~vv~~~l 293 (337)
..+...++.++++++++ |++++.+= ++.... ...-+.+.|
T Consensus 435 ~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~L 484 (878)
T 3s1s_A 435 QTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFL 484 (878)
T ss_dssp SSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHH
Confidence 12466789999998876 87776543 333212 244555555
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-09 Score=97.13 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g~--~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
..+.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++... |+ .+|+++.+|+....... .++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc--CCCce
Confidence 346899999999999999988753 4579999999999999999998764 33 56999999987643221 25799
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+|++|++.. .+ +. .. ..+.++++.+.+++++ |.++..+.+.
T Consensus 184 ~Ii~d~~~~-~~-----~~-----------------~~-----l~t~~~l~~~~~~LkpgG~lv~~~~~~ 225 (314)
T 2b2c_A 184 VIITDSSDP-VG-----PA-----------------ES-----LFGQSYYELLRDALKEDGILSSQGESV 225 (314)
T ss_dssp EEEECCC-----------------------------------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCC-CC-----cc-----------------hh-----hhHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 999999732 11 00 00 0125678888887877 7777766443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-09 Score=96.60 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=54.5
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--eccCCCCCCCCCCCC
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGAANIEVL--HGDFLNLDPKDPAYS 208 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~---~~~g~~~v~~~--~~D~~~~~~~~~~~~ 208 (337)
.+++|.+|||+|||||+.+..+++. ++|+|+|+++ ++..++++. +.+| .+|.++ ++|+.+++ ..
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-----~~ 139 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP-----VE 139 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC-----CC
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC-----CC
Confidence 3578999999999999999888875 6899999998 432221110 0111 168888 89998875 15
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
+||+|++|..
T Consensus 140 ~fD~V~sd~~ 149 (265)
T 2oxt_A 140 RTDVIMCDVG 149 (265)
T ss_dssp CCSEEEECCC
T ss_pred CCcEEEEeCc
Confidence 7999999976
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=87.31 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++. .++.++.+|+.+++. . .+||+|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~---~~~D~v~~ 106 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-G---RKFSAVVS 106 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-S---SCEEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-C---CCCcEEEE
Confidence 578899999999999999999874 38999999999999998874 468899999988754 2 57999994
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+. +++..-+ +++ ....+|+.+.+++++ |.++.+++..
T Consensus 107 ----~~-~~~~~~~----------------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 107 ----MF-SSVGYLK----------------TTE-------ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp ----CT-TGGGGCC----------------SHH-------HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ----cC-chHhhcC----------------CHH-------HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 21 1221100 111 235678888888887 7888776554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-07 Score=88.23 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=87.1
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~ 206 (337)
.+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+.+ |+++.+|+.+.+.
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 254 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY---- 254 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC----
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC----
Confidence 34445567788999999999999999999985 4579999999 999999999999998865 9999999987642
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
..+|+|++.- ++.. ++. +...++|+++.+.+++ |.++.....
T Consensus 255 -~~~D~v~~~~------vlh~-----------------~~d-------~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 255 -PEADAVLFCR------ILYS-----------------ANE-------QLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp -CCCSEEEEES------CGGG-----------------SCH-------HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred -CCCCEEEEec------hhcc-----------------CCH-------HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 2349999732 2211 111 1236789999998887 777665544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-09 Score=97.37 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=73.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 206 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 206 (337)
+...|.++||+.++|+++|.||.|..+++.+++.|+|+|+|.|+.+++.++ ++ .-.+++++++++.++..... .
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHhcC
Confidence 456678999999999999999999999999888899999999999999884 33 33579999999988742211 1
Q ss_pred C-CCccEEEECCCCCC
Q 019692 207 Y-SEVRAILLDPSCSG 221 (337)
Q Consensus 207 ~-~~fD~IlvDpPCSg 221 (337)
. +++|.|+.|-.||+
T Consensus 125 ~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 125 LIGKIDGILLDLGVSS 140 (347)
T ss_dssp CTTCEEEEEEECSCCH
T ss_pred CCCcccEEEECCccCH
Confidence 1 26999999999994
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-08 Score=87.79 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=78.5
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--CCCCcc
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--AYSEVR 211 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~~~~fD 211 (337)
.+.++.+|||+|||+|..+..++... .+|+++|+|+.+++.+++++ ...+++++++|+.+++.... ....||
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCcc
Confidence 35788999999999999999999874 38999999999999999886 33479999999987543210 002389
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+|++.....-. +.+ ....+|+.+.+.+++ |.++.+..+
T Consensus 127 ~v~~~~~~~~~-----------------------~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 127 NIYMRTGFHHI-----------------------PVE-------KRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp EEEEESSSTTS-----------------------CGG-------GHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEcchhhcC-----------------------CHH-------HHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99976432211 000 024677777777776 777766554
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.1e-08 Score=86.08 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~I 213 (337)
+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ ..+++++++|+.+ ++... .++||+|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~--~~~fD~v 115 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGL--GAPFGLI 115 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTC--CCCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcC--CCCEEEE
Confidence 467899999999999999999886 36999999999999999988 4579999999954 43221 2579999
Q ss_pred EEC
Q 019692 214 LLD 216 (337)
Q Consensus 214 lvD 216 (337)
++.
T Consensus 116 ~~~ 118 (226)
T 3m33_A 116 VSR 118 (226)
T ss_dssp EEE
T ss_pred EeC
Confidence 976
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=88.93 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=73.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++.. .+ ++.+|+.+++.. .++||+|++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~---~~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFP---SGAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSC---TTCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCC---CCCEEEEEEc
Confidence 7889999999999999988875 3689999999999999988754 22 788898877633 2579999964
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
... . .. ..-...+|+.+.+++++ |.++.++.+
T Consensus 122 ~~~-----~-~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 122 GDV-----L-SY-------------------------VENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SSH-----H-HH-------------------------CSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred chh-----h-hc-------------------------cccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 321 0 00 00035678888888887 777776654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-08 Score=89.76 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++. ++.++++|+.+++. .++||+|++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----~~~fD~v~~ 116 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----GRRFSAVTC 116 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC----SCCEEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc----cCCcCEEEE
Confidence 45789999999999999988775 3589999999999999998753 68899999988765 267999997
Q ss_pred CC
Q 019692 216 DP 217 (337)
Q Consensus 216 Dp 217 (337)
..
T Consensus 117 ~~ 118 (263)
T 3pfg_A 117 MF 118 (263)
T ss_dssp CT
T ss_pred cC
Confidence 43
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=92.95 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=80.9
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++....-.+++++.+|+..+..... .++||+|++|.+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~-~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT-PASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC-TTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc-CCCCCEEEECCC
Confidence 499999999999999999875 346999999999999999998765444579999999887642211 257999999976
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
... +. +... ...+.++.+.+.|++ |.++..+.+
T Consensus 169 ~~~-~~----~~~L-----------------------~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 169 AGA-IT----PQNF-----------------------TTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TTS-CC----CGGG-----------------------SBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Ccc-cc----chhh-----------------------hHHHHHHHHHHhcCCCcEEEEEecC
Confidence 331 11 1110 014667777777776 777766554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-08 Score=89.93 Aligned_cols=99 Identities=7% Similarity=-0.161 Sum_probs=76.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH----hCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL----SGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~----~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
..+.+|||+|||+|+.+..+++. + .+|+++|+|+.+++.+++++.. ..-++++++.+|+..+. ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC------CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH------hhCC
Confidence 34679999999999999888876 4 7999999999999999987643 22346999999998764 4699
Q ss_pred EEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 212 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 212 ~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+|++|.+ .| ...++.+.+.+++ |.++..+++.
T Consensus 142 ~Ii~d~~---------dp----------------------------~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 142 LIFCLQE---------PD----------------------------IHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EEEESSC---------CC----------------------------HHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEEECCC---------Ch----------------------------HHHHHHHHHhcCCCcEEEEEcCCc
Confidence 9999953 11 1167788888887 7887765553
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-08 Score=97.37 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=87.7
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCC------------CCEEEEEeCCHHHHHHHHHHH
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG------------KGKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------~g~V~avD~~~~~l~~l~~~~ 182 (337)
+.|.|+--..-+.+++.++++++|++|+|-|||+|++.+.+...+.. ...++|+|+++.....++-|+
T Consensus 195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 46888888888899999999999999999999999998877765532 246999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCCCC-CCCCCccEEEECCCCCCc
Q 019692 183 KLSGAANIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGS 222 (337)
Q Consensus 183 ~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~ 222 (337)
--.|+..-.+..+|....+... ....+||+|+.+||.++.
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~ 315 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE 315 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCcc
Confidence 9889876677888876654221 112479999999998754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-08 Score=88.09 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=73.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++ +.++.+|+.+.....+ .++||+|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~-~~~fD~i~ 106 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP-DKYLDGVM 106 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC-TTCBSEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC-CCCeeEEE
Confidence 467899999999999999998886 35799999999999988876 6788888876421111 26799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+. +++..-++ . ....+|+.+.+++++ |.++.++..
T Consensus 107 ~~------~~l~~~~~-----------------~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 107 IS------HFVEHLDP-----------------E-------RLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EE------SCGGGSCG-----------------G-------GHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred EC------CchhhCCc-----------------H-------HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 63 22221100 0 014678888887776 788777654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=88.91 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~ 207 (337)
+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+. +|+++.+|+.+..+
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 246 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP----- 246 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-----
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-----
Confidence 3444566788999999999999999999885 4579999999 99999999999999886 69999999875221
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..||+|++... +.. +.... ...+|+++.+.+++ |.++....
T Consensus 247 ~~~D~v~~~~v------l~~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 VTADVVLLSFV------LLN-----------------WSDED-------ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CCEEEEEEESC------GGG-----------------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCEEEEecc------ccC-----------------CCHHH-------HHHHHHHHHHhcCCCcEEEEEec
Confidence 24999997432 211 01111 24778888887777 66666554
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=86.72 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=85.1
Q ss_pred HHHhCC--CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019692 130 AAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 130 ~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 206 (337)
...++. .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...|+. +|+++.+|+.+.+..
T Consensus 156 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--- 230 (335)
T 2r3s_A 156 AQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG--- 230 (335)
T ss_dssp HHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC---
T ss_pred HHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC---
Confidence 334555 778999999999999999999886 45799999999 9999999999999886 499999999875422
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
..||+|++-- ++.. ++.+ ...++|+++.+.+++ |.++......
T Consensus 231 -~~~D~v~~~~------~l~~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 231 -NDYDLVLLPN------FLHH-----------------FDVA-------TCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp -SCEEEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred -CCCcEEEEcc------hhcc-----------------CCHH-------HHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 3499999721 1111 1111 135678888887776 6666655444
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-08 Score=90.12 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=59.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++..+ +...|+++|+++.+++.++++. .++.++.+|+.+++..+ ++||+|++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~---~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSD---TSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCT---TCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCC---CceeEEEE
Confidence 578999999999999999999876 3469999999999999988763 45789999988765332 57999996
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-08 Score=89.31 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHc---CCCCEE--EEEeCCHHHHHHHHHHHHHh-CCCcEEE--EeccCCCCCC----
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALM---KGKGKI--VACELNKERVRRLKDTIKLS-GAANIEV--LHGDFLNLDP---- 202 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V--~avD~~~~~l~~l~~~~~~~-g~~~v~~--~~~D~~~~~~---- 202 (337)
+.++.+|||+|||+|..+..++..+ .+...| +++|.|+.|++.++++++.. ++.++.+ ..+++.++..
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3567899999999998876554332 134544 99999999999999998764 5666654 4555544321
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.. ..++||+|++-- ++..-+| ....|++..++|++ |.++.++.+
T Consensus 130 ~~-~~~~fD~V~~~~------~l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 130 KK-ELQKWDFIHMIQ------MLYYVKD--------------------------IPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TT-CCCCEEEEEEES------CGGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cc-CCCceeEEEEee------eeeecCC--------------------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 00 025799998521 1211111 24678888888887 777766433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-08 Score=91.53 Aligned_cols=91 Identities=12% Similarity=0.198 Sum_probs=68.4
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
-...++..+++.+|++|||+|||+|..|. ++. ....+|+|+|+|+.+++.++++++.. .+++++++|+..++...
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHH
Confidence 34455666788899999999999999999 653 22233999999999999999887543 47999999998875321
Q ss_pred CC--CCCccEEEECCCCC
Q 019692 205 PA--YSEVRAILLDPSCS 220 (337)
Q Consensus 205 ~~--~~~fD~IlvDpPCS 220 (337)
.. ....|.|+.++|..
T Consensus 84 ~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHTSCEEEEEECCTT
T ss_pred hhcccCCceEEEECCCCC
Confidence 00 01357999999964
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=83.40 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=82.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..+.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+ ++|+++.+|+.+.....+ +.||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p--~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP--TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC--CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC--CCcCEEE
Confidence 456899999999999999999885 4579999999 9999999999998887 469999999987520111 4699998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
+-- ++.. ++.++ ..++|+++.+.+++ |+|+.....+.
T Consensus 254 ~~~------vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 254 MSQ------FLDC-----------------FSEEE-------VISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp EES------CSTT-----------------SCHHH-------HHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred Eec------hhhh-----------------CCHHH-------HHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 521 2210 11211 24778888887776 77777654443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-08 Score=88.08 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=75.8
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC--C------------------------
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A------------------------ 187 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g--~------------------------ 187 (337)
...+|.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.++++++... +
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4567899999999999776655443 22479999999999999998875431 0
Q ss_pred ---CcEE-EEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 019692 188 ---ANIE-VLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 262 (337)
Q Consensus 188 ---~~v~-~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~ 262 (337)
.+|. ++.+|+.+..+.. ....+||+|++- . ++. .+.....-...+|.
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~----~--~l~----------------------~i~~~~~~~~~~l~ 181 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL----L--AME----------------------CACCSLDAYRAALC 181 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE----S--CHH----------------------HHCSSHHHHHHHHH
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeeh----H--HHH----------------------HhcCCHHHHHHHHH
Confidence 1354 8899988743211 112579999952 1 110 00000011256899
Q ss_pred HHhCCCCC-cEEEEEcC
Q 019692 263 HALSFPGV-ERVVYSTC 278 (337)
Q Consensus 263 ~A~~~~~~-G~lvYsTC 278 (337)
+..++|++ |.++.++.
T Consensus 182 ~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 182 NLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHTTEEEEEEEEEEEE
T ss_pred HHHHHcCCCcEEEEEEe
Confidence 99999987 88888763
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.5e-08 Score=88.04 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=67.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-EeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV-LHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~-~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|.+|||+|||||+.|..+++. +.++|+|+|+++.|++.+.++ . .++.. ...|+..+.........||.|++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPVDFTEGLPSFASI 157 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGGGCTTCCCSEEEE
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchhhCCCCCCCEEEE
Confidence 5789999999999999988885 457999999999999874332 1 23332 23455444432211235999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
|...... ..+|....+++++ |.+|..
T Consensus 158 d~sf~sl-----------------------------------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 158 DVSFISL-----------------------------------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCSSSCG-----------------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred EeeHhhH-----------------------------------HHHHHHHHHHcCcCCEEEEE
Confidence 9753311 2467788887877 888875
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-08 Score=88.30 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=89.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---------------------------
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--------------------------- 187 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~--------------------------- 187 (337)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++++..+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 3568899999999999888777642 24899999999999999998865431
Q ss_pred --CcE-EEEeccCCCCCC-CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 019692 188 --ANI-EVLHGDFLNLDP-KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 263 (337)
Q Consensus 188 --~~v-~~~~~D~~~~~~-~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 263 (337)
.+| .++.+|+.+..+ .....++||+|++.- ++.. +.........+|.+
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~------~l~~----------------------~~~~~~~~~~~l~~ 183 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL------CLDA----------------------ACPDLPAYRTALRN 183 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------CHHH----------------------HCSSHHHHHHHHHH
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhh------hhhh----------------------hcCChHHHHHHHHH
Confidence 127 899999987654 111125799999631 1110 00001224678899
Q ss_pred HhCCCCC-cEEEEEcCCC------------CcccCHHHHHHHhchhcCCCcEEec
Q 019692 264 ALSFPGV-ERVVYSTCSI------------HQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 264 A~~~~~~-G~lvYsTCS~------------~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
+.+++++ |.++.++..- ...-+++.+...|+ ..||+++.
T Consensus 184 ~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~aGf~~~~ 235 (265)
T 2i62_A 184 LGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVE---EAGYTIEQ 235 (265)
T ss_dssp HHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHH---HTTCEEEE
T ss_pred HHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHH---HCCCEEEE
Confidence 9999887 7777665221 11124556666663 34677653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=86.68 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=84.2
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~ 208 (337)
...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+. +|+++.+|+.+..+ .
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~ 248 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-----R 248 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-----S
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-----C
Confidence 344566778999999999999999999885 4578999999 99999999999999886 69999999875221 2
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.||+|++.-. +.. +... ...++|+++.+.+++ |.++.+...
T Consensus 249 ~~D~v~~~~v------l~~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 249 KADAIILSFV------LLN-----------------WPDH-------DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CEEEEEEESC------GGG-----------------SCHH-------HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccEEEEccc------ccC-----------------CCHH-------HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 4999997432 211 0111 125788888888887 667666544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=82.30 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=72.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..++.. + .+|+++|+++.+++.++++. ..++.+|+.+.....+ .++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~-~~~fD~v~~ 99 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYE-EEQFDCVIF 99 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSC-TTCEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCC-CCccCEEEE
Confidence 67899999999999999998886 3 79999999999999887654 2578888876432221 257999997
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.- ++..-++ ...+|..+.+++++ |.++.++
T Consensus 100 ~~------~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 100 GD------VLEHLFD--------------------------PWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ES------CGGGSSC--------------------------HHHHHHHTGGGEEEEEEEEEEE
T ss_pred CC------hhhhcCC--------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 42 2211100 13778888888887 7777665
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-06 Score=81.59 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=84.8
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ ++|+++.+|+.... + ..
T Consensus 196 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---p--~~ 268 (369)
T 3gwz_A 196 AAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---P--DG 268 (369)
T ss_dssp HHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---C--SS
T ss_pred HhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---C--CC
Confidence 34556778999999999999999999985 4579999999 9999999999999887 46999999997321 1 26
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
||+|++-- ++.. ++.. ...++|+++.+.+++ |+++.......
T Consensus 269 ~D~v~~~~------vlh~-----------------~~d~-------~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 269 ADVYLIKH------VLHD-----------------WDDD-------DVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp CSEEEEES------CGGG-----------------SCHH-------HHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred ceEEEhhh------hhcc-----------------CCHH-------HHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99998632 2211 1111 124789999998887 77766554443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-07 Score=85.57 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=83.7
Q ss_pred hCCCC-CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCc
Q 019692 133 LAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 133 l~~~~-g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~f 210 (337)
++..+ +.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..++. +|+++.+|+.+.+... ...|
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~ 249 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE--GGAA 249 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT--TCCE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC--CCCc
Confidence 34455 7899999999999999999875 4579999999 88999999999998885 4999999998764211 1459
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
|+|++-- ++.. ++.++ ...+|+++.+.+++ |.++.....
T Consensus 250 D~v~~~~------vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 250 DVVMLND------CLHY-----------------FDARE-------AREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp EEEEEES------CGGG-----------------SCHHH-------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cEEEEec------cccc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999721 2211 11211 35788888888887 666665443
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.7e-07 Score=82.41 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=80.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ ++|+++.+|+.+.. + ..||+|
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---p--~~~D~v 239 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---P--AGAGGY 239 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---C--CSCSEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---C--CCCcEE
Confidence 3457899999999999999999875 4578999999 9999999999999887 46999999987321 1 269999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++- . ++.. ++.+ .+.++|+++.+.+++ |.|+......
T Consensus 240 ~~~----~--vlh~-----------------~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 240 VLS----A--VLHD-----------------WDDL-------SAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp EEE----S--CGGG-----------------SCHH-------HHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred EEe----h--hhcc-----------------CCHH-------HHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 952 1 2211 1111 135788888887776 7776655443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=95.83 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=63.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+-+|||+|||.|..+..||+. +..|+|+|.++.+++.|+..++..|.-+|.+.+++++++..... .++||+|++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALE-EGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCC-TTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhcc-CCCccEEEE
Confidence 4679999999999999999986 47999999999999999999998886689999999987632211 257999994
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.4e-07 Score=79.59 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+..+|||+|||.|-.++.+. +...++|+|+|+.+++.+++++..+| .+..+...|....++. .+||+|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~----~~~DvvLl 174 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA----EAGDLALI 174 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC----CBCSEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC----CCcchHHH
Confidence 457899999999998887665 56899999999999999999999998 4588999998776644 47999975
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.8e-07 Score=81.62 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+..+|||+|||.|-.++.++.. .+..+++|+|+|+.+++.+++|+..+|+. .++...|...-++. .+||+||+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p~----~~~DvaL~ 204 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRLD----EPADVTLL 204 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCCC----SCCSEEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCCC----CCcchHHH
Confidence 34679999999999998887765 36689999999999999999999999987 78888887765543 57999985
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-06 Score=77.11 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=76.3
Q ss_pred CCCeEEeecCCc---hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--------CCC
Q 019692 137 PGWKVLDACSAP---GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--------KDP 205 (337)
Q Consensus 137 ~g~~VLDl~aG~---G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~--------~~~ 205 (337)
+..+|||+|||+ |..+..+++. .+..+|+++|+|+.+++.+++++.. ..+++++.+|+.+... ...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 9876555554 4558999999999999999998843 3579999999976421 000
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
.+.+||.|++.. ++..-+|. ....+|++..+.+++ |.|+.++.+.
T Consensus 154 d~~~~d~v~~~~------vlh~~~d~------------------------~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLVG------MLHYLSPD------------------------VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEETT------TGGGSCTT------------------------THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCEEEEEec------hhhhCCcH------------------------HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 124789998532 22211110 025688888887776 7888776554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=81.97 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=81.6
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
.++..+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ ++|+++.+|+.+.. + ..|
T Consensus 163 ~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~--~~~ 234 (334)
T 2ip2_A 163 LLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV---P--SNG 234 (334)
T ss_dssp HSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC---C--SSC
T ss_pred hCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC---C--CCC
Confidence 345555 899999999999999999885 4579999999 9999999999988776 46999999987621 1 469
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|+|++.- ++.. ++.+. ..++|+++.+.+++ |.++......
T Consensus 235 D~v~~~~------vl~~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 235 DIYLLSR------IIGD-----------------LDEAA-------SLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp SEEEEES------CGGG-----------------CCHHH-------HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CEEEEch------hccC-----------------CCHHH-------HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 9999532 1211 11111 25788888887776 7777665443
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=79.06 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=62.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCCC-----------
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNLD----------- 201 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---~~v~~~~~D~~~~~----------- 201 (337)
++..+||++|| |+.|+.+|+.. +++|+++|.+++..+.+++++++.|+ ++|+++.+|+....
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 45789999998 57888888742 58999999999999999999999995 56999999976531
Q ss_pred ---C-------CCCCCCCccEEEECCC
Q 019692 202 ---P-------KDPAYSEVRAILLDPS 218 (337)
Q Consensus 202 ---~-------~~~~~~~fD~IlvDpP 218 (337)
+ .....++||+||+|+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 0 0111367999999975
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=8.4e-07 Score=81.07 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=70.5
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-----------------CC-----------
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-----------------GA----------- 187 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-----------------g~----------- 187 (337)
.++.+|||+|||+|..+ .++... ...+|+|+|+|+.+++.+++++++. |.
T Consensus 70 ~~~~~vLDiGcG~G~~~-~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQ-LLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGG-GTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHH-HHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 36889999999999943 333322 2469999999999999998865421 10
Q ss_pred --CcEEEEeccCCC-CCCCC--CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 019692 188 --ANIEVLHGDFLN-LDPKD--PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR 262 (337)
Q Consensus 188 --~~v~~~~~D~~~-~~~~~--~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~ 262 (337)
..+.++.+|+.+ .+... ...++||+|++.- ++..-++ + ..-...+|+
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~------~l~~~~~---------------~-------~~~~~~~l~ 199 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF------CLEAVSP---------------D-------LASFQRALD 199 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES------CHHHHCS---------------S-------HHHHHHHHH
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehh------hhhhhcC---------------C-------HHHHHHHHH
Confidence 026678889887 33221 1124699999642 1110000 0 112357899
Q ss_pred HHhCCCCC-cEEEEE
Q 019692 263 HALSFPGV-ERVVYS 276 (337)
Q Consensus 263 ~A~~~~~~-G~lvYs 276 (337)
++.+++++ |.++.+
T Consensus 200 ~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 200 HITTLLRPGGHLLLI 214 (289)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEE
Confidence 99999987 777665
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=80.51 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=73.0
Q ss_pred CCCeEEeecCCchh----HHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHH--------------Hh---------C
Q 019692 137 PGWKVLDACSAPGN----KTVHLAALMKG---KGKIVACELNKERVRRLKDTIK--------------LS---------G 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~----kt~~la~~~~~---~g~V~avD~~~~~l~~l~~~~~--------------~~---------g 186 (337)
++.+|||+|||+|- .+..+++.++. ..+|+|+|+|+.+++.|++++- ++ |
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 55556666442 2489999999999999998741 11 1
Q ss_pred ---C-----CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHH
Q 019692 187 ---A-----ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQK 258 (337)
Q Consensus 187 ---~-----~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 258 (337)
+ .+|.+.++|..+.+... .++||+|+| .. ++. +.++ ..|.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~--~~~fDlI~c----rn--vli-----------------yf~~-------~~~~ 232 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFC----RN--VMI-----------------YFDK-------TTQE 232 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEE----CS--SGG-----------------GSCH-------HHHH
T ss_pred ceeechhhcccCeEEecccCCCCCCc--CCCeeEEEE----CC--chH-----------------hCCH-------HHHH
Confidence 1 25999999988743221 257999997 21 111 0112 2378
Q ss_pred HHHHHHhCCCCC-cEEEE
Q 019692 259 KALRHALSFPGV-ERVVY 275 (337)
Q Consensus 259 ~lL~~A~~~~~~-G~lvY 275 (337)
+++....+.+++ |.|+.
T Consensus 233 ~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 233 DILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 999999998888 55543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=80.55 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..++.. +++|+++.+++.++++ ++.++.+|+.+++.. .++||+|++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~v~~~ 109 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLK---DESFDFALMV 109 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC---TTCEEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCC---CCCeeEEEEc
Confidence 3889999999999988766432 9999999999998877 578899998876533 2579999975
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
-. +..-++ ...+|+.+.+++++ |.++.++..
T Consensus 110 ~~------l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 110 TT------ICFVDD--------------------------PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp SC------GGGSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ch------HhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 32 211100 14677888787776 777776543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-07 Score=89.28 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=72.1
Q ss_pred CCCeEEeecCC------chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CCC
Q 019692 137 PGWKVLDACSA------PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG------~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~~~ 207 (337)
++.+|||+||| +|+.++.++....+.++|+++|+++.+. ....+|+++++|+.+++... ...
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 57899999999 7888888887655678999999999872 13467999999998864320 001
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
++||+|++|.- . . . .-+...|+.+.++|++ |.++.+..
T Consensus 287 ~sFDlVisdgs------H--~------------------~-------~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 287 GPFDIVIDDGS------H--I------------------N-------AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CCEEEEEECSC------C--C------------------H-------HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CCccEEEECCc------c--c------------------c-------hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 57999997631 0 0 0 1245778899998887 77777643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.8e-07 Score=82.16 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=64.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~-~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+|.+|||+|||+|+.+..+++. +..+|+|+|+++.+++.++++..+ +... ..++......+.....||.+.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDER-----VVVMEQFNFRNAVLADFEQGRPSFTSI 109 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTT-----EEEECSCCGGGCCGGGCCSCCCSEEEE
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCcc-----ccccccceEEEeCHhHcCcCCCCEEEE
Confidence 4779999999999999999886 345999999999999986665322 2221 1222222211111113677888
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
|...+.. ..+|..+.+++++ |.++..
T Consensus 110 D~v~~~l-----------------------------------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 110 DVSFISL-----------------------------------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCSSSCG-----------------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEhhhH-----------------------------------HHHHHHHHHhccCCCEEEEE
Confidence 8764432 2467888888887 777764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=85.15 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCCCCeEEeecCCchhHHHHHHHH--cCC-CCEEEEEeC--CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAAL--MKG-KGKIVACEL--NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYS 208 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~--~~~-~g~V~avD~--~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~ 208 (337)
++||++|+|+|||||+++..+++. ++. .|.|+|+|. .+-... ..|++-+.+..+ |+.++.. .
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv~~i~~~~G~Df~~~~~-----~ 138 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGWNIVTMKSGVDVFYKPS-----E 138 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTGGGEEEECSCCGGGSCC-----C
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCceEEEeeccCCccCCCC-----C
Confidence 578999999999999999999887 432 467777773 221100 023333567767 9987542 4
Q ss_pred CccEEEECCCCCCccc
Q 019692 209 EVRAILLDPSCSGSGT 224 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~ 224 (337)
++|+|++|.--+ +|.
T Consensus 139 ~~DvVLSDMAPn-SG~ 153 (269)
T 2px2_A 139 ISDTLLCDIGES-SPS 153 (269)
T ss_dssp CCSEEEECCCCC-CSC
T ss_pred CCCEEEeCCCCC-CCc
Confidence 699999997555 663
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.9e-07 Score=78.16 Aligned_cols=117 Identities=11% Similarity=0.073 Sum_probs=78.3
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
+...+....++.+|||+|||+|..+..++ .+|+++|+++. ++.++.+|+.+++.. .
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~~~---~ 113 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVPLE---D 113 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCSCC---T
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCCCC---C
Confidence 34444445678999999999998877652 68999999987 456788998876533 2
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
++||+|++... +. .++ ...+|..+.+++++ |.++.+++.. ...+.
T Consensus 114 ~~fD~v~~~~~------l~-~~~--------------------------~~~~l~~~~~~L~~gG~l~i~~~~~-~~~~~ 159 (215)
T 2zfu_A 114 ESVDVAVFCLS------LM-GTN--------------------------IRDFLEEANRVLKPGGLLKVAEVSS-RFEDV 159 (215)
T ss_dssp TCEEEEEEESC------CC-SSC--------------------------HHHHHHHHHHHEEEEEEEEEEECGG-GCSCH
T ss_pred CCEeEEEEehh------cc-ccC--------------------------HHHHHHHHHHhCCCCeEEEEEEcCC-CCCCH
Confidence 57999997432 21 111 14677788787776 7777766543 22355
Q ss_pred HHHHHHhchhcCCCcEEec
Q 019692 287 DVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 287 ~vv~~~l~~~~~~~~~~~~ 305 (337)
+.+...++ ..||+++.
T Consensus 160 ~~~~~~l~---~~Gf~~~~ 175 (215)
T 2zfu_A 160 RTFLRAVT---KLGFKIVS 175 (215)
T ss_dssp HHHHHHHH---HTTEEEEE
T ss_pred HHHHHHHH---HCCCEEEE
Confidence 66666664 35777653
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=82.59 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+++|++|||+||+|||+|..+++. +++|+|||+.+- ...+ ....+|+++.+|+....+.. .+||.|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l-----~~~l--~~~~~V~~~~~d~~~~~~~~---~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPM-----AQSL--MDTGQVTWLREDGFKFRPTR---SNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCC-----CHHH--HTTTCEEEECSCTTTCCCCS---SCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhc-----Chhh--ccCCCeEEEeCccccccCCC---CCcCEEE
Confidence 578999999999999999998875 479999998631 1112 12357999999998876543 5799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|.-+.
T Consensus 276 sDm~~~ 281 (375)
T 4auk_A 276 CDMVEK 281 (375)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 998754
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=79.31 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHc------CCC-----CEEEEEeCCH---HHHH-----------HHHHHHHH-----
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALM------KGK-----GKIVACELNK---ERVR-----------RLKDTIKL----- 184 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~------~~~-----g~V~avD~~~---~~l~-----------~l~~~~~~----- 184 (337)
.+++.+|||+|+|+|..++.+++.. .+. ..++++|.++ +.+. .++++++.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999999998887764 442 4899999887 4444 45555554
Q ss_pred -------h--CCCcEEEEeccCCCCCCCCCC--CCCccEEEECC--CCCCccccCcccCccCCCCCCCCCCCcccHHHHH
Q 019692 185 -------S--GAANIEVLHGDFLNLDPKDPA--YSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLN 251 (337)
Q Consensus 185 -------~--g~~~v~~~~~D~~~~~~~~~~--~~~fD~IlvDp--PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (337)
+ +..+++++.+|+.+..+.... ...||+|++|+ |+ ++|+. |
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~-------~~p~l-------------w------ 191 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA-------KNPDM-------------W------ 191 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT-------TCGGG-------------C------
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc-------cChhh-------------c------
Confidence 1 223688999998875433211 12699999998 42 34442 1
Q ss_pred HHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 252 KLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 252 ~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
+.+++....+++++ |.++--|+ ...|.+-|.. .||++..
T Consensus 192 -----~~~~l~~l~~~L~pGG~l~tysa-------a~~vrr~L~~---aGF~v~~ 231 (257)
T 2qy6_A 192 -----TQNLFNAMARLARPGGTLATFTS-------AGFVRRGLQE---AGFTMQK 231 (257)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEESCC-------BHHHHHHHHH---HTEEEEE
T ss_pred -----CHHHHHHHHHHcCCCcEEEEEeC-------CHHHHHHHHH---CCCEEEe
Confidence 24677777777777 66552222 1467777743 4788754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.3e-07 Score=88.35 Aligned_cols=105 Identities=9% Similarity=0.005 Sum_probs=70.4
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE--EEeccCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE--VLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~--~~~~D~~~~~~~~~~~~ 208 (337)
..+.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++ |+..+. +...++..++.. .+
T Consensus 101 ~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~---~~ 170 (416)
T 4e2x_A 101 ATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT---EG 170 (416)
T ss_dssp HTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH---HC
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC---CC
Confidence 3355678999999999999999998875 35999999999999988866 544322 112223222211 15
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+||+|++. +++..-+| ...+|+.+.+++++ |.++.++
T Consensus 171 ~fD~I~~~------~vl~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 171 PANVIYAA------NTLCHIPY--------------------------VQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp CEEEEEEE------SCGGGCTT--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEEEC------ChHHhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 79999964 22321111 25678888888887 7777654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.7e-06 Score=74.96 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCeEEeecCCc--hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 138 GWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 138 g~~VLDl~aG~--G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
...|||+|||+ ++.+..+++...+..+|+++|.|+.|++.++.++...+..+++++++|+.+.
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP 143 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence 36899999997 5566777776667789999999999999999988755445799999999875
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=73.94 Aligned_cols=81 Identities=9% Similarity=0.175 Sum_probs=65.4
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC----CCCEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK--------------------------ERVRRLKDTIKLSG 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~----~~g~V~avD~~~--------------------------~~l~~l~~~~~~~g 186 (337)
..+.||++|++.|+.++.|+..+. +.++|+++|..+ .+++.+++++++.|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 356999999999999999998764 367899999642 14778999999999
Q ss_pred C--CcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 187 A--ANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 187 ~--~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+ ++|+++.+|+.+..+..+ ..+||+|++|.-
T Consensus 186 l~~~~I~li~Gda~etL~~~~-~~~~d~vfIDaD 218 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAP-IDTLAVLRMDGD 218 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCC-CCCEEEEEECCC
T ss_pred CCcCceEEEEeCHHHHHhhCC-CCCEEEEEEcCC
Confidence 8 679999999977655432 257999999963
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-06 Score=77.99 Aligned_cols=110 Identities=17% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~ 208 (337)
...++..++.+|||+|||+|..+..+++.. +..+++++|+ +..+. +++++..+. ++|+++.+|+....+
T Consensus 177 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p------ 246 (348)
T 3lst_A 177 ARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP------ 246 (348)
T ss_dssp HHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC------
T ss_pred HHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC------
Confidence 344566778999999999999999999885 4568999999 44444 333333444 359999999863211
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.||+|++-- ++.. ++..+ ..++|+++.+.+++ |+|+.....
T Consensus 247 ~~D~v~~~~------vlh~-----------------~~d~~-------~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 247 HADVHVLKR------ILHN-----------------WGDED-------SVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp CCSEEEEES------CGGG-----------------SCHHH-------HHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CCcEEEEeh------hccC-----------------CCHHH-------HHHHHHHHHHhcCCCCEEEEEEec
Confidence 699998621 2211 11111 25789999998887 777766543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=73.00 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=78.9
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+..+..+|+|+|||+|..+..+++.. +..+++..|. +..++.++++++..+.++|+++.+|+...+. ..+|+
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----~~~D~ 247 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----PEADL 247 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----CCCSE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----CCceE
Confidence 455667899999999999999999985 4568888887 8899999988876667789999999875432 34799
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
|++- -++.. |+.++ -.+||+++.+.+++ |+|+-...-+.
T Consensus 248 ~~~~------~vlh~-----------------~~d~~-------~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 248 YILA------RVLHD-----------------WADGK-------CSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp EEEE------SSGGG-----------------SCHHH-------HHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred EEee------eeccc-----------------CCHHH-------HHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 8851 12211 12222 14678888887776 77666554433
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-06 Score=78.94 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=61.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-----CCCCccEE
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-----AYSEVRAI 213 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-----~~~~fD~I 213 (337)
.+|+|++||.|+.++.+... +-..|.++|+++.+++..+.|. .+..++++|+.++....- ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 47999999999999988775 3345789999999999988874 346678899887753210 12579999
Q ss_pred EECCCCCCccccCc
Q 019692 214 LLDPSCSGSGTAAE 227 (337)
Q Consensus 214 lvDpPCSg~G~~~~ 227 (337)
+.+|||.+.....+
T Consensus 76 ~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 76 IGGPPCQGFSSIGK 89 (376)
T ss_dssp EECCCCCTTC----
T ss_pred EecCCCCCcccccC
Confidence 99999998876543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-06 Score=79.59 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=56.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
.+|+|++||.|+.++.+...-..-..|+++|+++.+++..+.|.. +..++++|+.++....-....+|+|+.+||
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 479999999999999888751001379999999999999998863 334678898877532100015899999999
Q ss_pred CCCccccCc
Q 019692 219 CSGSGTAAE 227 (337)
Q Consensus 219 CSg~G~~~~ 227 (337)
|.+..+..+
T Consensus 78 Cq~fS~ag~ 86 (343)
T 1g55_A 78 CQPFTRIGR 86 (343)
T ss_dssp ---------
T ss_pred CcchhhcCC
Confidence 998876543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=74.83 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=63.0
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+-+|+|++||.|+.++.+... +-..|+++|+++.+++..+.|.... . ++|+.++.... ...+|+|+.+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~--~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKT--IPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGG--SCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhh--CCCCCEEEECC
Confidence 568999999999999888764 3456899999999999999987422 1 68888776443 24699999999
Q ss_pred CCCCccccCcc
Q 019692 218 SCSGSGTAAER 228 (337)
Q Consensus 218 PCSg~G~~~~~ 228 (337)
||.+.....++
T Consensus 80 PCQ~fS~ag~~ 90 (327)
T 2c7p_A 80 PCQAFSISGKQ 90 (327)
T ss_dssp CCTTTCTTSCC
T ss_pred CCCCcchhccc
Confidence 99998776543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-06 Score=72.55 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~ 212 (337)
.+++++.|+|+||+||+++...+... +..+|+|+|+-..-.+. -...+.+|.+.|++..+ |+..+.+ .++|.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~-----~~~Dt 147 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP-----EKCDT 147 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-----CCCSE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-----ccccE
Confidence 35789999999999999998887764 34589999996543210 00123467778999999 9866654 35999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
|+||.-=| +| +| ..+.... .+.|+-|.++++.|.++ |-++.-+..+|++.+
T Consensus 148 llcDIgeS-s~----~~----------------~vE~~Rt-----lrvLela~~wL~~~~fc---~KVl~py~p~v~e~l 198 (267)
T 3p8z_A 148 LLCDIGES-SP----SP----------------TVEESRT-----IRVLKMVEPWLKNNQFC---IKVLNPYMPTVIEHL 198 (267)
T ss_dssp EEECCCCC-CS----CH----------------HHHHHHH-----HHHHHHHGGGCSSCEEE---EEESCCCSHHHHHHH
T ss_pred EEEecCCC-CC----Ch----------------hhhhhHH-----HHHHHHHHHhcccCCEE---EEEccCCChhHHHHH
Confidence 99995432 22 11 0111111 23777777877666444 567777777776544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-06 Score=79.47 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=60.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Ilv 215 (337)
.+..+||+++|+|..++.+.+ +..+++.+|.++..++.+++|++. .+++++++.|+...... .+...+||+||+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 466799999999988876544 447999999999999999999975 35699999996543211 111246999999
Q ss_pred CCCCC
Q 019692 216 DPSCS 220 (337)
Q Consensus 216 DpPCS 220 (337)
|||.-
T Consensus 166 DPPYe 170 (283)
T 2oo3_A 166 DPSYE 170 (283)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99953
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-05 Score=73.73 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=54.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+ + . ..||+|+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~---~~~D~v~ 272 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-S--V---PQGDAMI 272 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C--C---CCEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-C--C---CCCCEEE
Confidence 5667899999999999999999985 4578999999 888877654 2569999999976 2 1 1289999
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 273 ~ 273 (372)
T 1fp1_D 273 L 273 (372)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.8e-06 Score=77.09 Aligned_cols=82 Identities=22% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~I 213 (337)
++++.+|||+|||||+++..++... +...|+++|+...+...... .+..|.+-+.+... |...+. ..++|+|
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~l~-----~~~~DvV 160 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFNME-----VIPGDTL 160 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGGSC-----CCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhhcC-----CCCcCEE
Confidence 5688999999999999998877653 44679999997543211110 01123222433322 433332 2579999
Q ss_pred EECCCCCCccc
Q 019692 214 LLDPSCSGSGT 224 (337)
Q Consensus 214 lvDpPCSg~G~ 224 (337)
++|.--+ +|.
T Consensus 161 LSDmApn-sG~ 170 (282)
T 3gcz_A 161 LCDIGES-SPS 170 (282)
T ss_dssp EECCCCC-CSC
T ss_pred EecCccC-CCC
Confidence 9997655 663
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00027 Score=64.88 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=64.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g---~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
..+||=+|.|.|+.+..+.+.. +..+|+.+|+|+..++.+++.+... | -++++++.+|+..+.... .++||+
T Consensus 84 pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~--~~~yDv 160 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT--SQTFDV 160 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS--SCCEEE
T ss_pred CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc--cccCCE
Confidence 5699999999999988887753 3468999999999999999987653 2 246999999999887554 368999
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
|++|.+-
T Consensus 161 Ii~D~~d 167 (294)
T 3o4f_A 161 IISDCTD 167 (294)
T ss_dssp EEESCCC
T ss_pred EEEeCCC
Confidence 9999874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.6e-05 Score=70.74 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+.. + .. |+|+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~---p--~~-D~v~ 266 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFDGV---P--KG-DAIF 266 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTCC---C--CC-SEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCCCC---C--CC-CEEE
Confidence 4567899999999999999999986 4578999999 8888766532 57999999987621 1 12 8988
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
+-- ++.. |+.++ ..++|+++.+.+++ |+|+.....+.
T Consensus 267 ~~~------vlh~-----------------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 267 IKW------ICHD-----------------WSDEH-------CLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp EES------CGGG-----------------BCHHH-------HHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred Eec------hhhc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 622 2211 11221 24788888887776 77777665543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7e-05 Score=75.74 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=80.3
Q ss_pred CCeEEeecCCchhH---HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 138 GWKVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 138 g~~VLDl~aG~G~k---t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+..|||+|||+|-. ++..++..+...+|+|||.++ +...+++..+.+|..+ |+++++|.+++... +++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence 34799999999987 444444433223799999997 5667788888899865 99999999988643 579999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC--cccCHHHHH
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH--QVENEDVIK 290 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~--~~ENe~vv~ 290 (337)
+...= |+..+.- . -.+.|.++-+++++ |.++=+.|+++ +-+.+..-.
T Consensus 433 VSEwM--G~fLl~E-------------------------~---mlevL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~ 482 (637)
T 4gqb_A 433 VSELL--GSFADNE-------------------------L---SPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYN 482 (637)
T ss_dssp ECCCC--BTTBGGG-------------------------C---HHHHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHH
T ss_pred EEEcC--ccccccc-------------------------C---CHHHHHHHHHhcCCCcEEccccceEEEEEecCHHHHH
Confidence 97753 3322210 0 12567777778887 55554444443 456665544
Q ss_pred HH
Q 019692 291 SV 292 (337)
Q Consensus 291 ~~ 292 (337)
..
T Consensus 483 e~ 484 (637)
T 4gqb_A 483 EV 484 (637)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00013 Score=69.08 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+ +.. .. |+|+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p----~~-D~v~ 264 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVP----SG-DTIL 264 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCC----CC-SEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCC----CC-CEEE
Confidence 5667899999999999999999986 4578999999 888776553 2579999999886 321 12 8998
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
+-- ++.. |+.++ -.++|+++.+.+++ |+|+.....+
T Consensus 265 ~~~------vlh~-----------------~~d~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 265 MKW------ILHD-----------------WSDQH-------CATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp EES------CGGG-----------------SCHHH-------HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ehH------Hhcc-----------------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 521 2211 11221 24788888887776 7777665544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=71.64 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.++++.+|||+|||||+++..++... +...|+++|+.......... ....|. ++..+..++...... ..+||+|
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~~l~---~~~~DlV 144 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIHRLE---PVKCDTL 144 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceehhcC---CCCccEE
Confidence 35688999999999999998877653 34578888887432100000 011122 444455554322211 2579999
Q ss_pred EECCCCCCccc
Q 019692 214 LLDPSCSGSGT 224 (337)
Q Consensus 214 lvDpPCSg~G~ 224 (337)
++|.--+ +|.
T Consensus 145 lsD~apn-sG~ 154 (277)
T 3evf_A 145 LCDIGES-SSS 154 (277)
T ss_dssp EECCCCC-CSC
T ss_pred EecCccC-cCc
Confidence 9997544 553
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.6e-05 Score=72.68 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=50.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~I 213 (337)
.++|.+|||+|||||+++..+++.. +...|+++|+.......... .+..+.+.+.+... |+..+. ..++|+|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~l~-----~~~~DlV 151 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFTMP-----TEPSDTL 151 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTTSC-----CCCCSEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCCceEEeecCceeeecC-----CCCcCEE
Confidence 3579999999999999999988753 34578999996432100000 00112122333322 333322 2579999
Q ss_pred EECCCCCCccc
Q 019692 214 LLDPSCSGSGT 224 (337)
Q Consensus 214 lvDpPCSg~G~ 224 (337)
++|.-.+ +|.
T Consensus 152 lsD~APn-sG~ 161 (300)
T 3eld_A 152 LCDIGES-SSN 161 (300)
T ss_dssp EECCCCC-CSS
T ss_pred eecCcCC-CCC
Confidence 9998877 774
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.64 E-value=3.2e-05 Score=78.54 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=81.3
Q ss_pred CCeEEeecCCchhHHHHH---HHHcC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC-
Q 019692 138 GWKVLDACSAPGNKTVHL---AALMK---------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK- 203 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~l---a~~~~---------~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~- 203 (337)
+..|||+|||+|-.+... ++..+ .+.+|+|||.++.++..++.... +|..+ |+++.+|.+++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 347999999999986432 22222 23499999999988877766654 77766 99999999987531
Q ss_pred -CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC--
Q 019692 204 -DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS-- 279 (337)
Q Consensus 204 -~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS-- 279 (337)
....+++|+|+...- |.+-- -+++.+.|..+-+++++ |.++=+.|+
T Consensus 489 ~~~~~ekVDIIVSElm----Gsfl~--------------------------nEL~pe~Ld~v~r~Lkp~Gi~iP~~~t~y 538 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL----GSFGD--------------------------NELSPECLDGVTGFLKPTTISIPQKYTSY 538 (745)
T ss_dssp HHTTCCCCSEEEECCC----BTTBG--------------------------GGSHHHHHHTTGGGSCTTCEEESCEEEEE
T ss_pred ccCCCCcccEEEEecc----ccccc--------------------------hhccHHHHHHHHHhCCCCcEEECCccEEE
Confidence 001257999998765 22210 01234677777788887 655544443
Q ss_pred CCcccCHHHHHHHh
Q 019692 280 IHQVENEDVIKSVL 293 (337)
Q Consensus 280 ~~~~ENe~vv~~~l 293 (337)
+.|-+.+..-+.+.
T Consensus 539 laPi~~~~l~~~v~ 552 (745)
T 3ua3_A 539 VKPIMSTHIHQTIK 552 (745)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEecCHHHHHHHH
Confidence 34566666555443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=66.39 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
.+|+.|||.|||+|..+..++.+ +.+++++|+++.+++.++++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 68999999999999887776654 3689999999999999999998763
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.58 E-value=4e-05 Score=62.88 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=50.2
Q ss_pred CCCCeEEeecCCch-hHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE-
Q 019692 136 KPGWKVLDACSAPG-NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI- 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G-~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I- 213 (337)
.++++|||+|||+| ..+..|++.. +..|+|+|+++..+. ++..|..+.... .+..||+|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------~v~dDiF~P~~~--~Y~~~DLIY 94 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------IVRDDITSPRME--IYRGAALIY 94 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT---------------EECCCSSSCCHH--HHTTEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc---------------eEEccCCCCccc--ccCCcCEEE
Confidence 45789999999999 5888888742 367999999988765 788898774322 12479999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
-+.||
T Consensus 95 sirPP 99 (153)
T 2k4m_A 95 SIRPP 99 (153)
T ss_dssp EESCC
T ss_pred EcCCC
Confidence 88888
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=69.02 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+ + . ..||+|+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~---p~~D~v~ 251 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-S--I---PNADAVL 251 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-C--C---CCCSEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-C--C---CCccEEE
Confidence 3567899999999999999999875 4578999999 999887664 2459999999865 2 1 1389999
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 252 ~ 252 (352)
T 1fp2_A 252 L 252 (352)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.51 E-value=2.5e-05 Score=65.64 Aligned_cols=62 Identities=18% Similarity=0.021 Sum_probs=47.3
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+++|++|||++||. +++|+++.|++.++++... +++++++|+.+++......++||+
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence 4578999999999986 2389999999999987532 488999999887641001267999
Q ss_pred EEE
Q 019692 213 ILL 215 (337)
Q Consensus 213 Ilv 215 (337)
|++
T Consensus 67 V~~ 69 (176)
T 2ld4_A 67 ILS 69 (176)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=68.64 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=61.1
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|++||.||.+..+...--+...|.|+|+++.+++..+.|.. +..++++|..++....-....+|+++..|||
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC 79 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPPC 79 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCCC
Confidence 79999999999998887651011358899999999999888853 2346778888775432101258999999999
Q ss_pred CCccccCc
Q 019692 220 SGSGTAAE 227 (337)
Q Consensus 220 Sg~G~~~~ 227 (337)
.+.....+
T Consensus 80 Q~fS~ag~ 87 (333)
T 4h0n_A 80 QPFTRNGK 87 (333)
T ss_dssp CCSEETTE
T ss_pred cchhhhhh
Confidence 98776544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0002 Score=65.25 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=55.3
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~ 212 (337)
.+++++.|||+||+||+++...+... +..+|+|+|+-..-.+. -...+.+|.+.|.+..+ |+..+.+ .++|.
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~-----~~~D~ 163 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS-----ECCDT 163 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC-----CCCSE
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC-----CCCCE
Confidence 35788999999999999998777764 34589999997541100 00011334445888887 8877765 35999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|+||.-
T Consensus 164 ivcDig 169 (321)
T 3lkz_A 164 LLCDIG 169 (321)
T ss_dssp EEECCC
T ss_pred EEEECc
Confidence 999988
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=65.30 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCCCccEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVRAI 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~-V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~fD~I 213 (337)
+.+-+|+|++||.||.+..+... +-... |+++|+++.+++..+.|. .+..++.+|..++.... +....+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEE
Confidence 44668999999999999888764 21112 699999999998888774 23457788988876432 112469999
Q ss_pred EECCCCCCccccC
Q 019692 214 LLDPSCSGSGTAA 226 (337)
Q Consensus 214 lvDpPCSg~G~~~ 226 (337)
+..|||.+.....
T Consensus 88 ~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 88 IGGSPCNDLSIVN 100 (295)
T ss_dssp EECCCCGGGBTTC
T ss_pred EecCCCccccccC
Confidence 9999999877654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=68.41 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKI-VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V-~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.-+|+|++||.||.+..+... + +...| .|+|+++.+++..+.|... . ++++|..++....-....+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence 358999999999999888764 2 11356 7999999999999988631 1 567888877543210125899999
Q ss_pred CCCCCCc
Q 019692 216 DPSCSGS 222 (337)
Q Consensus 216 DpPCSg~ 222 (337)
.|||.+.
T Consensus 83 gpPCQ~f 89 (327)
T 3qv2_A 83 SPPCQPY 89 (327)
T ss_dssp CCCCTTC
T ss_pred cCCccCc
Confidence 9999987
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00064 Score=65.40 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=54.2
Q ss_pred CCCCCCeEEeecCCchhHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHHHHH---hCC-CcEEEEeccCC
Q 019692 134 APKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKL---SGA-ANIEVLHGDFL 198 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la-~~~~~~g~V~avD~~~~~l~~l~~~~~~---~g~-~~v~~~~~D~~ 198 (337)
.+++|+.|+|+||+.|..+..++ ...++.++|+|+|.++...+.+++|++. .+. .||++++.-+.
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 45789999999999999999988 4444448999999999999999999998 346 78888876543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00031 Score=65.99 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=52.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|++
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~v~~ 257 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI-----PSADAVLL 257 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC-----CCCSEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC-----CCceEEEE
Confidence 467899999999999999999985 4578999999 788776553 3569999999876 21 24899996
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00022 Score=66.26 Aligned_cols=78 Identities=14% Similarity=0.276 Sum_probs=62.4
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|++||.||.++.+.+. +-..|.|+|+++.+++..+.|. + -.++.+|..++.... +..+|+|+.-|||
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~---~---~~~~~~DI~~i~~~~--~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE--FPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC---C---SEEEESCGGGCCGGG--SCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC---C---CCcccCChhhCCHhh--CCcccEEEecCCC
Confidence 7999999999999887664 2236789999999999988874 2 256789998886543 4579999999999
Q ss_pred CCccccCc
Q 019692 220 SGSGTAAE 227 (337)
Q Consensus 220 Sg~G~~~~ 227 (337)
.+..+..+
T Consensus 72 Q~fS~ag~ 79 (331)
T 3ubt_Y 72 QSWSEGGS 79 (331)
T ss_dssp GGTEETTE
T ss_pred CCcCCCCC
Confidence 99877654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00035 Score=62.87 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=40.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~ 187 (337)
..+|+.|||.+||+|..+.....+ +.+++++|+++..++.++++++.+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 368999999999999776655443 36899999999999999999987654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00057 Score=64.43 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=61.2
Q ss_pred CeEEEechh-hHHHHHHhCCCC------CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 117 GCVFLQGKA-SSMVAAALAPKP------GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 117 G~~~~Qd~s-s~l~~~~l~~~~------g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
|.-++.|+. ..-++..+++.+ ++.|||+|.|+|..|..|+.... ..+|+++|+|++.+..+++.. . ..+
T Consensus 31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~--~~~ 106 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E--GSP 106 (353)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T--TSS
T ss_pred CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c--CCC
Confidence 444444544 344455566653 58999999999999999998642 368999999999999998876 2 367
Q ss_pred EEEEeccCCCCC
Q 019692 190 IEVLHGDFLNLD 201 (337)
Q Consensus 190 v~~~~~D~~~~~ 201 (337)
++++++|+..++
T Consensus 107 l~ii~~D~l~~~ 118 (353)
T 1i4w_A 107 LQILKRDPYDWS 118 (353)
T ss_dssp CEEECSCTTCHH
T ss_pred EEEEECCccchh
Confidence 999999997653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00069 Score=64.22 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=79.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-----C---CCcEEEEeccCCCCCCCC-CC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-----G---AANIEVLHGDFLNLDPKD-PA 206 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-----g---~~~v~~~~~D~~~~~~~~-~~ 206 (337)
.+..+||=+|.|.|+....+.+. +..+|+.||+|+..++.+++.+... . .++++++.+|+..+.... ..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 35689999999999988888765 3479999999999999999876321 1 124899999987654210 01
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE-EcCCCCc
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY-STCSIHQ 282 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY-sTCS~~~ 282 (337)
.++||+|++|.+-...+. .| ... ......++.++.+.+.|++ |.+|- +.|-..+
T Consensus 282 ~~~yDvIIvDl~D~~~s~---~p------------------~g~-a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~ 337 (381)
T 3c6k_A 282 GREFDYVINDLTAVPIST---SP------------------EED-STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT 337 (381)
T ss_dssp TCCEEEEEEECCSSCCCC---C-----------------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH
T ss_pred cCceeEEEECCCCCcccC---cc------------------cCc-chHHHHHHHHHHHHHhcCCCCEEEEecCCCcch
Confidence 257999999976322111 00 000 0123456777777778887 66554 3444443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=64.39 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 204 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 204 (337)
.-+|+|+|||.||.+..+... +-..|+++|+++.+++..+.|... ..+..++++|+.++....
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 458999999999999888654 223589999999999988877521 123346678877664321
Q ss_pred -CCCCCccEEEECCCCCCccccC
Q 019692 205 -PAYSEVRAILLDPSCSGSGTAA 226 (337)
Q Consensus 205 -~~~~~fD~IlvDpPCSg~G~~~ 226 (337)
.....+|+|+.-|||-+..+..
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG 186 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAG 186 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----
T ss_pred hhcCCCCCEEEecCCCcchhhhC
Confidence 0124689999999999877654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0045 Score=56.40 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=76.7
Q ss_pred CCCCCCeEEeecC------CchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 134 APKPGWKVLDACS------APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 134 ~~~~g~~VLDl~a------G~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
.+.-|++|||+|| +||+ ..+.+. .+. +.|+++|+.+-.. ..++ ++++|...+..
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~-~p~g~~VVavDL~~~~s-----------da~~-~IqGD~~~~~~---- 166 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQW-LPTGTLLVDSDLNDFVS-----------DADS-TLIGDCATVHT---- 166 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHH-SCTTCEEEEEESSCCBC-----------SSSE-EEESCGGGEEE----
T ss_pred eecCCCEEEeCCCCCCCCCCCcH--HHHHHh-CCCCcEEEEeeCccccc-----------CCCe-EEEcccccccc----
Confidence 3556999999996 9997 334444 555 5999999976321 1233 48999765443
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
..+||+|+.|.-..-+|.. .-|. .+ ...|+ ..+|+-|.+.|++ |.+| |-++..|.
T Consensus 167 ~~k~DLVISDMAPNtTG~~--D~d~----------~R------s~~L~---ElALdfA~~~LkpGGsFv---VKVFQGsg 222 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHV--TKEN----------DS------KEGFF---TYLCGFIKQKLALGGSIA---VKITEHSW 222 (344)
T ss_dssp SSCEEEEEECCCCTTSCSS--CSCC----------CC------CCTHH---HHHHHHHHHHEEEEEEEE---EEECSSSC
T ss_pred CCCCCEEEecCCCCcCCcc--ccch----------hH------HHHHH---HHHHHHHHHhCcCCCEEE---EEEecCCC
Confidence 2679999999887777762 1110 00 01233 3455556666665 6666 45666555
Q ss_pred HHHHHHHhchhcCCCcEEecCCC
Q 019692 286 EDVIKSVLPIAMSFGFQLATPFP 308 (337)
Q Consensus 286 e~vv~~~l~~~~~~~~~~~~~~~ 308 (337)
++.+..+. ..|+.+..++
T Consensus 223 ~~~L~~lr-----k~F~~VK~fK 240 (344)
T 3r24_A 223 NADLYKLM-----GHFSWWTAFV 240 (344)
T ss_dssp CHHHHHHH-----TTEEEEEEEE
T ss_pred HHHHHHHH-----hhCCeEEEEC
Confidence 55454443 2566665544
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=61.01 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=57.0
Q ss_pred CeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC------------CCC-C
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL------------DPK-D 204 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~------------~~~-~ 204 (337)
-+++|++||.||.++.+... +- ..|.|+|+++.+++..+.|. .+..++.+|...+ ... .
T Consensus 541 l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence 47999999999999988775 21 25789999999999888774 2344555554221 111 1
Q ss_pred CCCCCccEEEECCCCCCccccC
Q 019692 205 PAYSEVRAILLDPSCSGSGTAA 226 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~ 226 (337)
+..+.+|+|+.-|||-+.....
T Consensus 614 p~~~~vDll~GGpPCQ~FS~ag 635 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFSGMN 635 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCCSSS
T ss_pred ccCCCeeEEEEcCCCcchhhhC
Confidence 1124699999999999876543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.43 Score=43.20 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=74.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~-~~D~~~~~~~~~~~~~fD~Il 214 (337)
.+.+||=.| |+|+.+.+++..+. .+.+|++++.+......+.+.+....-.+++++ .+|..+...-......+|.|+
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 467788555 67888888877653 335899999998877666555543211458888 789876543332235789999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTC 278 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC 278 (337)
..+..+..+ .. ..+.+.........+++.+.+....+++||++.
T Consensus 89 h~A~~~~~~---~~-----------------~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 89 HIASVVSFS---NK-----------------YDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp ECCCCCSCC---SC-----------------HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EeCCCCCCC---CC-----------------HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 876543221 00 122233344455677777764333478887654
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.016 Score=55.41 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=60.1
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHhCCC--------------------------
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKGK----IVACELNKERVRRLKDTIKLSGAA-------------------------- 188 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g~----V~avD~~~~~l~~l~~~~~~~g~~-------------------------- 188 (337)
-+|+|+|||.||.+..+...-.+-.. |.++|+++.+++..+.|....+.-
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~ 90 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIK 90 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHH
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccc
Confidence 48999999999998888765110123 889999999999988887432100
Q ss_pred -----cEE----------EEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcc
Q 019692 189 -----NIE----------VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228 (337)
Q Consensus 189 -----~v~----------~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~ 228 (337)
.+. ...+|..++....- .+.+|+++.-|||.+.....++
T Consensus 91 ~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~i-p~~vDll~ggpPCQ~fS~ag~~ 144 (403)
T 4dkj_A 91 KINNTIKASYLNYAKKHFNNLFDIKKVNKDNF-PKNIDIFTYSFPCQDLSVQGLQ 144 (403)
T ss_dssp HHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTS-CSSCSEEEECCCCTTTCTTSCC
T ss_pred cccHHHHHHHHhhcccCCCcccchhhcCHhhC-CCCCcEEEEeCCCCCHHHhCCC
Confidence 000 03467777654432 1357999999999887766543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.02 Score=59.40 Aligned_cols=45 Identities=22% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC---C-CEEEEEeCCHHHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG---K-GKIVACELNKERVRRLKDTI 182 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~---~-g~V~avD~~~~~l~~l~~~~ 182 (337)
.-+|+|++||.||.++-+...... . ..+.|+|+++.+++..+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 357999999999999888765210 0 25789999999999988874
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.016 Score=53.70 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCH---HHHHHHHHHHHHhC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK---ERVRRLKDTIKLSG 186 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~---~~l~~l~~~~~~~g 186 (337)
..+|+.|||.+||+|..+.....+ +.+.+++|+++ ..++.+++++++.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 468999999999999766544444 36899999999 99999999987765
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.041 Score=50.60 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCeEEeecCCchhHHHHHHH---HcCCCCE--EEEEeCCH--------HHHHHHHHH-HHHhC---CCc--EEEEeccCC
Q 019692 138 GWKVLDACSAPGNKTVHLAA---LMKGKGK--IVACELNK--------ERVRRLKDT-IKLSG---AAN--IEVLHGDFL 198 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~---~~~~~g~--V~avD~~~--------~~l~~l~~~-~~~~g---~~~--v~~~~~D~~ 198 (337)
.-+|||+|-|+|..++.... ..++..+ .+++|.++ ..+..+.+. +.... -.+ +++..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 45799999999986544332 2344454 46666532 112222222 22221 122 567788987
Q ss_pred CCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 199 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
...+... ...||+|++|+= | -+++|++ | +.+++....+++++ |+++-=|
T Consensus 177 ~~l~~l~-~~~~Da~flDgF-s----P~kNPeL-W-----------------------s~e~f~~l~~~~~pgg~laTYt 226 (308)
T 3vyw_A 177 KRIKEVE-NFKADAVFHDAF-S----PYKNPEL-W-----------------------TLDFLSLIKERIDEKGYWVSYS 226 (308)
T ss_dssp HHGGGCC-SCCEEEEEECCS-C----TTTSGGG-G-----------------------SHHHHHHHHTTEEEEEEEEESC
T ss_pred HHHhhhc-ccceeEEEeCCC-C----cccCccc-C-----------------------CHHHHHHHHHHhCCCcEEEEEe
Confidence 6544332 136999999972 1 1456764 1 15788888888887 5555334
Q ss_pred CCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 278 CSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 278 CS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
|+ ..|.+.|. ..||++..
T Consensus 227 aa-------g~VRR~L~---~aGF~V~k 244 (308)
T 3vyw_A 227 SS-------LSVRKSLL---TLGFKVGS 244 (308)
T ss_dssp CC-------HHHHHHHH---HTTCEEEE
T ss_pred Cc-------HHHHHHHH---HCCCEEEe
Confidence 44 88999885 45787754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.012 Score=54.48 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=45.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
..+|+.|||.+||+|..+.. |..+ +.+.+++|+++..++.+++++++.+.. ...++.|+.++
T Consensus 250 ~~~~~~VlDpF~GsGtt~~a-a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i 311 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLV-AERE--SRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRI 311 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHH-HHHT--TCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH-HHHc--CCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHH
Confidence 46899999999999965543 3333 368999999999999999998876643 33444454443
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.047 Score=59.53 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC------------CCCC-
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN------------LDPK- 203 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~------------~~~~- 203 (337)
.-+++|++||.||.++.+... +- ..|.|+|+++.+++..+.|. .+..++.+|... ....
T Consensus 851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 457999999999999988764 21 25889999999999888874 233455555331 1111
Q ss_pred CCCCCCccEEEECCCCCCccccC
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAA 226 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~ 226 (337)
.+..+.+|+|+.-|||-+.....
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~ag 946 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMN 946 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSS
T ss_pred ccccCccceEEecCCCccccccc
Confidence 11124689999999999876543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.19 Score=46.56 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=48.6
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
..+++|++||-.|+|+ |..+.++|+.++ .+|+++|.++++++.++ ++|.+.+. .|...+. ..+|
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v~---~~~~~~~------~~~D 236 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVKHFY---TDPKQCK------EELD 236 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCSEEE---SSGGGCC------SCEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCCeec---CCHHHHh------cCCC
Confidence 4788999999999876 666777887753 58999999999887664 47876543 3332221 2689
Q ss_pred EEEE
Q 019692 212 AILL 215 (337)
Q Consensus 212 ~Ilv 215 (337)
+||-
T Consensus 237 ~vid 240 (348)
T 3two_A 237 FIIS 240 (348)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.14 Score=45.36 Aligned_cols=85 Identities=7% Similarity=0.025 Sum_probs=60.9
Q ss_pred CCCeEEeecCCch-hHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPG-NKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G-~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|.++|=.|++.+ |++..+|..+ ....+|+.++.+++.++.+.+.++..+-.++.++..|..+.... ...+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4788888887653 5666666644 23469999999999999999888887765688888998764311 1124
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
++.|.++.++...+
T Consensus 85 G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 85 GNIDGVYHSIAFAN 98 (256)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEecccccc
Confidence 67899998876544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.061 Score=54.86 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=74.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC---------C--CCEEEEEeCCHHHHHHHHHH--------------HHHh-----C
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK---------G--KGKIVACELNKERVRRLKDT--------------IKLS-----G 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~---------~--~g~V~avD~~~~~l~~l~~~--------------~~~~-----g 186 (337)
+.-+|+|+|-|+|...+.+.+... . .-+++++|..+-..+.+++. ++.. |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 456899999999998888776541 1 14689999954333333332 2211 2
Q ss_pred C-----C----cEEEEeccCCCCCCCCC--CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHH
Q 019692 187 A-----A----NIEVLHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 255 (337)
Q Consensus 187 ~-----~----~v~~~~~D~~~~~~~~~--~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (337)
+ . .+++..+|+.+..+... ....||.+++|+... .++|+. |+
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p-----~~np~~-------------w~--------- 190 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-----AKNPDM-------------WN--------- 190 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC-------CCTT-------------CS---------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC-----CCChhh-------------hh---------
Confidence 1 1 36678888876544321 015799999998632 346664 12
Q ss_pred HHHHHHHHHhCCCCCc-EEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 256 FQKKALRHALSFPGVE-RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 256 ~Q~~lL~~A~~~~~~G-~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
..++....++.++| ++..-||. ..|++.|. ..||.+.
T Consensus 191 --~~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~---~aGf~~~ 228 (689)
T 3pvc_A 191 --EQLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQ---QAGFNVT 228 (689)
T ss_dssp --HHHHHHHHHHEEEEEEEEESCCC-------HHHHHHHH---HTTCEEE
T ss_pred --HHHHHHHHHHhCCCCEEEeccCc-------HHHHHHHH---hCCeEEE
Confidence 34555555555654 44433444 46777774 3456654
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.16 Score=46.72 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|++||=.|+|+.+ .+.++|+.+ +...++++|.++++++.++ ++|...
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~----~lGa~~ 208 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAK----SFGAMQ 208 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHH----HcCCeE
Confidence 34567899999999988755 456667665 3457899999999887654 578754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.21 Score=46.58 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCCeEEeec-CCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 137 PGWKVLDAC-SAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 137 ~g~~VLDl~-aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+|++||=.| +|+ |..+.++|+.++ ..+|+++|.++++++.++ ++|.+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~----~lGad~ 220 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVK----SLGAHH 220 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHH----HTTCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHH----HcCCCE
Confidence 789999887 333 556777777643 469999999999888764 478664
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.38 Score=45.39 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=40.2
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~ 187 (337)
..+++|++||-.|||+ |..+.++|+.+ +..+|+++|.++++++.++ ++|.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLS----DAGF 231 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH----TTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCC
Confidence 4678999999999877 77788888876 3348999999999887654 4676
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.62 E-value=3.6 Score=38.66 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=52.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHH---HHHHHHHHHHHhC--------CCcEEEEeccCCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKE---RVRRLKDTIKLSG--------AANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~---~l~~l~~~~~~~g--------~~~v~~~~~D~~~~~~~~ 204 (337)
++.+||=.| |+|+.+.+++..+... .+|++++.++. ..+.+.+.++... ..++.++.+|..+...-.
T Consensus 68 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTLLTG-ATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEEEEC-TTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEEEec-CCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 345677555 6788998888876443 48999998876 5555655554431 146899999987744322
Q ss_pred CCCCCccEEEECCC
Q 019692 205 PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ~~~~~fD~IlvDpP 218 (337)
....+|.|+..+.
T Consensus 147 -~~~~~d~Vih~A~ 159 (427)
T 4f6c_A 147 -LPENMDTIIHAGA 159 (427)
T ss_dssp -CSSCCSEEEECCC
T ss_pred -CcCCCCEEEECCc
Confidence 3567999998654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.53 Score=43.41 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC--C-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG--K-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~--~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.+.+||=. -|+|+.+.+++..+.. + .+|++++.++.....+.+.+. -.++.++.+|..+...-...+..+|.|
T Consensus 20 ~~k~vlVT-GatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 20 DNQTILIT-GGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTCEEEEE-TTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CCCEEEEE-CCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence 36678744 4778899888876533 2 389999999887766655442 246899999987643211113468999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
+..+.
T Consensus 96 ih~Aa 100 (344)
T 2gn4_A 96 IHAAA 100 (344)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98665
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.21 E-value=0.8 Score=43.03 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=39.9
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~ 232 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGFE 232 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4678999999999876 66777888875 3348999999999988764 46763
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.89 Score=40.99 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=57.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.+||=.| |+|+.+.+++..+ ..+.+|+.++.+...++.+.+.++..+..++.++..|..+.... ...++
T Consensus 40 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 118 (293)
T 3rih_A 40 SARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG 118 (293)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 355666555 5667777777755 33458999999999888888877766655688999998764311 01134
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++.++--
T Consensus 119 ~iD~lvnnAg~ 129 (293)
T 3rih_A 119 ALDVVCANAGI 129 (293)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.95 Score=41.48 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=41.0
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+..+ .+|+++|.++++++.++ ++|...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~ 213 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGAEV 213 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCCE
Confidence 4678999999999876 778888888763 59999999999988654 467654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.68 Score=40.69 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=56.6
Q ss_pred CCCeEEeecCCch-hHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPG-NKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G-~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.+||=.|++.| |.+.+++..+ ..+.+|+.++.+....+.+.+..+..+-.++.++..|..+..... ..+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3678887887643 4666666554 334689999999877777777776666546889999987653110 012
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
+.+|.++..+.-..
T Consensus 86 g~id~li~~Ag~~~ 99 (266)
T 3oig_A 86 GVIHGIAHCIAFAN 99 (266)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCeeEEEEcccccc
Confidence 46899998776443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=89.62 E-value=0.96 Score=41.83 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=40.8
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|.+.
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 219 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADL 219 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence 35788999999999876 66677788775 3348999999999887664 468764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.56 E-value=4.2 Score=35.62 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=49.8
Q ss_pred CeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
.+||=.| + |..+.++++.+.. +..|++++.++.....+.. .+++++.+|..++. ...+|.|+.-+
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-----~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-----LDGVTHLLIST 71 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-----CTTCCEEEECC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc-----cCCCCEEEECC
Confidence 5789888 5 9999998887633 3589999999876654432 35889999998854 35789999855
Q ss_pred C
Q 019692 218 S 218 (337)
Q Consensus 218 P 218 (337)
.
T Consensus 72 ~ 72 (286)
T 3ius_A 72 A 72 (286)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.09 E-value=0.96 Score=42.05 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.4
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.++ ..+|+++|.++++++.++ ++|.+.
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~ 238 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATH 238 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCE
Confidence 4678999999999876 667778888763 347999999999988764 457653
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.95 E-value=4 Score=35.58 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCCeEEeecC-CchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACS-APGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~a-G~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.+||=.|+ |. +.+.+++..+ ..+.+|+.++.+...++.+.+.++..+-.++.++..|..+..... ..+
T Consensus 21 ~~k~vlITGasg~-GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGT-GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSS-SHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCC-chHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 3667887766 33 3555555543 334689999999999998888887666567999999987643110 012
Q ss_pred CCccEEEECCCCC
Q 019692 208 SEVRAILLDPSCS 220 (337)
Q Consensus 208 ~~fD~IlvDpPCS 220 (337)
+++|.++..+--+
T Consensus 100 g~id~li~~Ag~~ 112 (266)
T 3o38_A 100 GRLDVLVNNAGLG 112 (266)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCcEEEECCCcC
Confidence 4689999876543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=88.90 E-value=0.26 Score=44.69 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=42.1
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
..++++++|..+.....+ .++||+|++|||.-........++ .. ....+..........++..+.++
T Consensus 20 ~~~~i~~gD~~~~l~~l~-~~s~DlIvtdPPY~~~~~y~~~~~----------~~--~~~~~~~~~l~~l~~~~~~~~rv 86 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFP-EASVHLVVTSPPYWTLKRYEDTPG----------QL--GHIEDYEAFLDELDRVWREVFRL 86 (297)
T ss_dssp -CEEEEESCHHHHHTTSC-TTCEEEEEECCCCCCCC-----------------CC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEECcHHHHHhhCC-CCceeEEEECCCCCCccccCCChh----------hh--cccccHHHHHHHHHHHHHHHHHH
Confidence 357899999887433222 257999999999754321111100 00 01122223334456778888888
Q ss_pred CCCcEEEEEcC
Q 019692 268 PGVERVVYSTC 278 (337)
Q Consensus 268 ~~~G~lvYsTC 278 (337)
+++|..+|..+
T Consensus 87 Lk~~G~l~i~~ 97 (297)
T 2zig_A 87 LVPGGRLVIVV 97 (297)
T ss_dssp EEEEEEEEEEE
T ss_pred cCCCcEEEEEE
Confidence 88744444333
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=1.4 Score=39.51 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=54.2
Q ss_pred CCCeEEeecCCch-hHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPG-NKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G-~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|.+||=.|++.| |.+.+++..+ ....+|+.++.++...+.+++..+..+ ++.++..|..+.... ...+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence 5778898887754 4666666654 334689999999776666666666654 578888998764311 0113
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+.+|.++.++-
T Consensus 108 g~iD~lVnnAG 118 (293)
T 3grk_A 108 GKLDFLVHAIG 118 (293)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCc
Confidence 57899998765
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.37 E-value=1.2 Score=39.24 Aligned_cols=81 Identities=7% Similarity=0.142 Sum_probs=57.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.|.+||=.| |+|+.+.+++..+ ..+.+|+.++.+.+.++.+.+.++..+-.++.++..|..+..... ..++
T Consensus 9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (262)
T 3pk0_A 9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG 87 (262)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 366777555 5567777777755 334589999999999998888887776556889999987643110 1124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++..+-
T Consensus 88 ~id~lvnnAg 97 (262)
T 3pk0_A 88 GIDVVCANAG 97 (262)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=0.85 Score=39.79 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=55.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~--~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.+.+||=. -|+|+.+.+++..+. .+.+|+.++.+...++.+.+.++..+ .++.++..|..+..... ..+
T Consensus 3 ~~k~vlIT-GasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVT-GGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEES-SCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35567744 467888888887653 34689999999988888877777665 34788889987643110 012
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.|+..+-.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 368999987653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.15 E-value=3.1 Score=35.96 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.|.+||=.|+ +|+.+.+++..+. .+.+|+.+|.+.+.++.+.+.++..+ .++.++..|..+..... ..++
T Consensus 8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3667776664 5667777777653 34689999999999999888887765 35888899987643110 0124
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+--
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987753
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=87.40 E-value=1.1 Score=41.21 Aligned_cols=54 Identities=26% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 214 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIAL----EYGATD 214 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHH----HHTCCE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCce
Confidence 345688999999998876 55667777764 3347999999999887664 467653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=1.7 Score=39.85 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=38.7
Q ss_pred hCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||=.|+|+++ .+.++++.+. ..+|+++|.++++++.++ ++|...
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~----~~Ga~~ 211 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAK----KIGADV 211 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhh----hcCCeE
Confidence 467899999999998865 4555565543 479999999999876544 567653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=87.36 E-value=0.56 Score=47.48 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=74.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC---------CC--CEEEEEeC---CHHHHHHHH-----------HHHHHh-----C
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK---------GK--GKIVACEL---NKERVRRLK-----------DTIKLS-----G 186 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~---------~~--g~V~avD~---~~~~l~~l~-----------~~~~~~-----g 186 (337)
+.-+|+|+|-|+|...+...+... .. -+++++|. +.+-++.+- +.++.. |
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 345899999999998777665531 11 35899999 666665221 222222 1
Q ss_pred C---------CcEEEEeccCCCCCCCCC--CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHH
Q 019692 187 A---------ANIEVLHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 255 (337)
Q Consensus 187 ~---------~~v~~~~~D~~~~~~~~~--~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (337)
+ -.+++..+|+.+..+... ....||.|++|+-.. .++|+. |+
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-----~~np~~-------------w~--------- 198 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-----AKNPDM-------------WT--------- 198 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-----GGCGGG-------------SC---------
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-----cCChhh-------------hh---------
Confidence 1 125566677765433221 014699999998522 356664 12
Q ss_pred HHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEe
Q 019692 256 FQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 256 ~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
..++....+++++|..+.|.|+. ..|++.|.. .||.+.
T Consensus 199 --~~~~~~l~~~~~~g~~~~t~~~~------~~vr~~L~~---aGf~v~ 236 (676)
T 3ps9_A 199 --QNLFNAMARLARPGGTLATFTSA------GFVRRGLQD---AGFTMQ 236 (676)
T ss_dssp --HHHHHHHHHHEEEEEEEEESCCC------HHHHHHHHH---HTCEEE
T ss_pred --HHHHHHHHHHhCCCCEEEeccCc------HHHHHHHHh---CCeEEE
Confidence 34566666666665555444442 567777743 355553
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.09 E-value=0.41 Score=43.53 Aligned_cols=81 Identities=11% Similarity=-0.001 Sum_probs=50.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC--CCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~--~~fD~Il 214 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.+........+.+....-.++.++.+|..+...-.... ..+|.|+
T Consensus 5 ~~~vlVTG-atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 5 KGTILVTG-GAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CcEEEEec-CCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 45777444 77888888887653 34689999987665554444444432245888899987643111001 2589999
Q ss_pred ECCCC
Q 019692 215 LDPSC 219 (337)
Q Consensus 215 vDpPC 219 (337)
..+..
T Consensus 84 h~A~~ 88 (341)
T 3enk_A 84 HFAAL 88 (341)
T ss_dssp ECCCC
T ss_pred ECccc
Confidence 86653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.07 E-value=1.3 Score=41.23 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=39.7
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+.+++|++||-.|+|+ |..+.++|+.+ ..+|+++|.++++++.+++ +|...
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~~ 241 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGADE 241 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 3688999999999875 66677777775 2579999999998887653 67654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.06 E-value=3.8 Score=36.07 Aligned_cols=81 Identities=9% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELN------------KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 203 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~------------~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 203 (337)
.|.+||=.|++ |+.+.+++..+ ..+.+|+.+|.+ .+.++.+...++..|. ++.++..|..+....
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHHH
Confidence 36677766654 56777777655 334689999987 7788888777777663 588899998764311
Q ss_pred C-------CCCCCccEEEECCCC
Q 019692 204 D-------PAYSEVRAILLDPSC 219 (337)
Q Consensus 204 ~-------~~~~~fD~IlvDpPC 219 (337)
. ..++.+|.++..+--
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~ 109 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGI 109 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 0 012468999987753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.03 E-value=1.7 Score=40.02 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=39.7
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...+++|++||-.|+|+ |..+.++|+.++ .+|+++|.++++++.++ .+|.+.
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~ 215 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGADV 215 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCE
Confidence 35788999999999865 556777777653 46999999999988764 467763
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=86.98 E-value=0.47 Score=43.79 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCCeEEeec-CC-chhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 137 PGWKVLDAC-SA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 137 ~g~~VLDl~-aG-~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+|++||=.| +| .|..+.++++.. + .+|++++.++++++.+++ +|.+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~ 198 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-G-LRVITTASRNETIEWTKK----MGADI 198 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEECCSHHHHHHHHH----HTCSE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----cCCcE
Confidence 899999773 33 355566677764 2 599999999998887664 67653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=1.5 Score=40.12 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=40.5
Q ss_pred CCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.+++|++||-.|+|+ |..+.++|+.++ ..+|+++|.++++++.++ ++|.+.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~----~lGa~~ 219 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAR----EVGADA 219 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCE
Confidence 578999999999876 666777887763 469999999999988764 468764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=86.75 E-value=5 Score=36.33 Aligned_cols=82 Identities=10% Similarity=0.184 Sum_probs=58.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.+||=.|++ |+.+.+++..+ ..+.+|++++.+...++.+.+.++..+.. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 36678866654 66788877765 33468999999999999988888777642 5889999987643110 113
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.++.++--
T Consensus 86 g~id~lv~nAg~ 97 (319)
T 3ioy_A 86 GPVSILCNNAGV 97 (319)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 568999987753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=3.2 Score=36.33 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=56.0
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
|..+|=.|++ |+.+.+++..+ ..+.+|+.++.+...++.+.+.+.. .+-.++.++..|..+..... ..++
T Consensus 8 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (265)
T 3lf2_A 8 EAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG 86 (265)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 6677766654 55777777654 3346899999999999888888776 44445889999987643110 1124
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+--
T Consensus 87 ~id~lvnnAg~ 97 (265)
T 3lf2_A 87 CASILVNNAGQ 97 (265)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=86.12 E-value=0.77 Score=34.48 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
+.+|+=+|+ |+.+..++..+... .+|+++|.++..++.+. .. ++.++..|..+..........+|.|+.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---GVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---TCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---CCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 567888887 66666666654322 58999999998877655 22 355666776543211011246899997
Q ss_pred CCC
Q 019692 216 DPS 218 (337)
Q Consensus 216 DpP 218 (337)
-.|
T Consensus 76 ~~~ 78 (118)
T 3ic5_A 76 AAP 78 (118)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=1.2 Score=40.45 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=48.9
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+||=.| |+|..+.+++..+ ..+..|++++.+..........+.... ..+++++.+|..+...-......+|.
T Consensus 25 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 103 (351)
T 3ruf_A 25 PKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH 103 (351)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence 56888554 7888888888765 334689999985443222222222221 14689999998764321111246899
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|+.-+.
T Consensus 104 Vih~A~ 109 (351)
T 3ruf_A 104 VLHQAA 109 (351)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.98 E-value=4.9 Score=36.01 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.|.+||=.|++ |+.+.+++..+ ..+.+|+.++.+...++.+.+.++..|. ++.++..|..+..... ..++
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 57788866655 66777777655 3346899999999999998888887764 4888899987643110 0124
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
.+|.++.++--.
T Consensus 108 ~id~lvnnAg~~ 119 (301)
T 3tjr_A 108 GVDVVFSNAGIV 119 (301)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 689999977543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=85.76 E-value=1.9 Score=38.95 Aligned_cols=78 Identities=5% Similarity=0.055 Sum_probs=46.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHH--HHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLK--DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~--~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+||=. -|+|..+.+++..+. .+..|+++..+......+. ..+. ...+++++.+|..+...-...+..+|.|+
T Consensus 9 ~~~vlVT-GatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi 85 (338)
T 2rh8_A 9 KKTACVV-GGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ--ELGDLKIFRADLTDELSFEAPIAGCDFVF 85 (338)
T ss_dssp CCEEEEE-CTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG--GGSCEEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred CCEEEEE-CCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC--CCCcEEEEecCCCChHHHHHHHcCCCEEE
Confidence 5678744 488999999887653 3357888777654321111 1121 11358889999876432211123579998
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
.-+.
T Consensus 86 h~A~ 89 (338)
T 2rh8_A 86 HVAT 89 (338)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.72 E-value=0.66 Score=42.63 Aligned_cols=75 Identities=9% Similarity=0.005 Sum_probs=44.7
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 188 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 188 ~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
..+.++++|..+.....+ .++||+|++|||...... . + + + ..............|..+.++
T Consensus 13 ~~~~ii~gD~~~~l~~l~-~~svDlI~tDPPY~~~~~--~--~--y---------~---~~~~~~~~~~l~~~l~~~~rv 73 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFP-EESISLVMTSPPFALQRK--K--E--Y---------G---NLEQHEYVDWFLSFAKVVNKK 73 (323)
T ss_dssp SSEEEEESCHHHHGGGSC-SSCEEEEEECCCCSSSCS--C--S--S---------C---SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeCcHHHHHhhCC-CCCeeEEEECCCCCCCcc--c--c--c---------C---CcCHHHHHHHHHHHHHHHHHH
Confidence 347889999875432221 257999999999753210 0 0 0 0 112334455566778888888
Q ss_pred CCCcEEEEEcCCCC
Q 019692 268 PGVERVVYSTCSIH 281 (337)
Q Consensus 268 ~~~G~lvYsTCS~~ 281 (337)
+++|..+|..|.-.
T Consensus 74 Lk~~G~i~i~~~d~ 87 (323)
T 1boo_A 74 LKPDGSFVVDFGGA 87 (323)
T ss_dssp EEEEEEEEEEECCC
T ss_pred CcCCcEEEEEECCE
Confidence 88855555555533
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=85.63 E-value=2.3 Score=39.59 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 230 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAE----EVGATA 230 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCCE
Confidence 446788999999999876 55677777775 3348999999999887665 467754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=85.36 E-value=1.9 Score=39.83 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=38.2
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT 181 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~ 181 (337)
...+++|++||=.|+|+ |..+.++|+.+ +...|+++|.++++++.+++.
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh
Confidence 35788999999998866 55677788775 333599999999999887754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=85.25 E-value=1 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=48.5
Q ss_pred eEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEEECC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~IlvDp 217 (337)
+||=.| |+|+.+.++++.+... .+|++++.++..+... .+++++.+|..+ ...-...+..+|.|+..+
T Consensus 2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---------TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---------CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 456444 6788999988876443 5899999997654322 468999999987 321112245799999866
Q ss_pred CCC
Q 019692 218 SCS 220 (337)
Q Consensus 218 PCS 220 (337)
.-+
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.69 E-value=2.5 Score=38.74 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=38.7
Q ss_pred CCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.+ +|++||-.|+|+ |..+.++|+.+.+..+|+++|.++++++.+++ +|.+.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~ 219 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY 219 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE
Confidence 77 999999999865 55677777776212589999999998877653 67654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=1.7 Score=40.27 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=39.6
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|.+.
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 239 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE 239 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcE
Confidence 4678999999999865 55677777775 3348999999999887664 568754
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=5.8 Score=34.45 Aligned_cols=81 Identities=9% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC-
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY- 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~- 207 (337)
.|.+||=.| |+|+.+.+++..+ ..+.+|+.++.+++.++.+.+.++..| .++.++..|..+..... ..+
T Consensus 8 ~~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 366777666 5667777777654 334689999999998887777776655 35888889987642110 012
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.++..+--
T Consensus 86 g~id~lv~~Ag~ 97 (260)
T 2ae2_A 86 GKLNILVNNAGI 97 (260)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.40 E-value=10 Score=33.11 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=55.5
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
+.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..|. .++.++..|..+..... ..++
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56777555 5677888777755 3346899999999998888888877765 35888889987643110 0123
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+.
T Consensus 111 ~iD~vi~~Ag 120 (279)
T 1xg5_A 111 GVDICINNAG 120 (279)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=3.6 Score=35.37 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 209 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.++..++.+.+.++..+. ++.++..|..+...-. ..++.
T Consensus 11 ~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 88 (255)
T 1fmc_A 11 GKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 56777554 67888888887653 345899999999888887777776653 5888889987643110 00236
Q ss_pred ccEEEECCC
Q 019692 210 VRAILLDPS 218 (337)
Q Consensus 210 fD~IlvDpP 218 (337)
+|.|+..+.
T Consensus 89 ~d~vi~~Ag 97 (255)
T 1fmc_A 89 VDILVNNAG 97 (255)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.24 E-value=6.5 Score=34.48 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC-
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY- 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~- 207 (337)
.|.++|=.|+ +|+.+.+++..+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3667776664 5667777777553 346899999999988887777766653 4888889987643110 012
Q ss_pred CCccEEEECCC
Q 019692 208 SEVRAILLDPS 218 (337)
Q Consensus 208 ~~fD~IlvDpP 218 (337)
+.+|.++..+-
T Consensus 98 g~id~lv~nAg 108 (273)
T 1ae1_A 98 GKLNILVNNAG 108 (273)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 56899998765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.20 E-value=8.7 Score=33.88 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=57.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|..+|=.|++ +|.+..++..+ ....+|+.+|.+++.++.+.+.++..|. ++..+..|..+.... ...++
T Consensus 8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 36777766655 55677776655 3346999999999999999988888874 478888898764311 12357
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
+.|.++.++-
T Consensus 86 ~iDiLVNNAG 95 (255)
T 4g81_D 86 HVDILINNAG 95 (255)
T ss_dssp CCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 8999998774
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.18 E-value=1.9 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.297 Sum_probs=39.3
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|.+.
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 240 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAK----VFGATD 240 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HhCCce
Confidence 4678999999999765 55677777765 3348999999999988764 467753
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.14 E-value=6.5 Score=34.43 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=56.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..|. ++.++..|..+...- ...++
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 366777665 5677888887765 3346899999999988888877777663 588899998764311 01124
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.|+..+-.
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 68999987653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.10 E-value=6.7 Score=33.29 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v-~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+||=.| |+|+.+.+++..+. .+.+|++++.++..++.+.. . ++ .++.+|.. ..-...+..+|.|+
T Consensus 20 ~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---~~~~~~~~Dl~--~~~~~~~~~~D~vi 89 (236)
T 3e8x_A 20 QGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---GASDIVVANLE--EDFSHAFASIDAVV 89 (236)
T ss_dssp -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---TCSEEEECCTT--SCCGGGGTTCSEEE
T ss_pred CCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---CCceEEEcccH--HHHHHHHcCCCEEE
Confidence 367888555 67888888877653 34689999999887665432 2 46 78899987 21112245789999
Q ss_pred ECCC
Q 019692 215 LDPS 218 (337)
Q Consensus 215 vDpP 218 (337)
..+.
T Consensus 90 ~~ag 93 (236)
T 3e8x_A 90 FAAG 93 (236)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8665
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=84.06 E-value=7.1 Score=34.10 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=55.4
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC---CCCCCCccE
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK---DPAYSEVRA 212 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~---~~~~~~fD~ 212 (337)
|.++|=.| |+|+.+.+++..+ ..+.+|+.+|.+...++.+.+.+...+. ..+.++..|..+.... ...++.+|.
T Consensus 10 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 88 (267)
T 3t4x_A 10 GKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI 88 (267)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence 56777555 5566777777754 3346899999999998888887776643 3477888887653210 012357899
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
++..+--
T Consensus 89 lv~nAg~ 95 (267)
T 3t4x_A 89 LINNLGI 95 (267)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987653
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.03 E-value=1.6 Score=36.41 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=48.4
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC---CCCccEEEEC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA---YSEVRAILLD 216 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~---~~~fD~IlvD 216 (337)
+||=.| |+|+.+.+++..+... +|++++.++..++.+.+.+. . .++..|..+...-... ++.+|.|+..
T Consensus 2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~~-----~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 73 (207)
T 2yut_A 2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREVG-----A-RALPADLADELEAKALLEEAGPLDLLVHA 73 (207)
T ss_dssp EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHHT-----C-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhcc-----C-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence 345444 6788999999988777 99999999888776655442 1 6777887654311000 1368999986
Q ss_pred CCC
Q 019692 217 PSC 219 (337)
Q Consensus 217 pPC 219 (337)
+.-
T Consensus 74 ag~ 76 (207)
T 2yut_A 74 VGK 76 (207)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=83.93 E-value=2.6 Score=36.87 Aligned_cols=120 Identities=10% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.|.++|=.|+ +|+.+.+++..+ ..+.+|+.++.+++.++.+.+.+ + .++.++..|..+..... ..++
T Consensus 7 ~gk~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIGG-THGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4677886665 456777777654 33469999999998887766554 3 35888999987653110 1134
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHH----HHHHHHHHHhCCCC-CcEEEEEcC
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA----FQKKALRHALSFPG-VERVVYSTC 278 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~----~Q~~lL~~A~~~~~-~G~lvYsTC 278 (337)
.+|.++..+-.+..+.+. ..+.++..+.-+ -...+++.++..++ .|.+|+.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~-----------------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFD-----------------QVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp SEEEEEECCCCCCCBCGG-----------------GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCChh-----------------hCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 789999877544322111 013444433332 23445666666544 378887643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=2 Score=39.94 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=39.1
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|.+.
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 243 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATD 243 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCcE
Confidence 4678999999999765 55667777765 3348999999999887654 467753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=2.4 Score=38.05 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=55.0
Q ss_pred CCCeEEeecCCc-hhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAP-GNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~-G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.+||=.|++. .+.+..++..+ ..+.+|+.++.+++..+.+.+..+..+ .+.++..|..+..... ..+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888888764 46777766654 334689999999877777776666665 3578888987643110 112
Q ss_pred CCccEEEECCCCC
Q 019692 208 SEVRAILLDPSCS 220 (337)
Q Consensus 208 ~~fD~IlvDpPCS 220 (337)
+.+|.++..+--.
T Consensus 107 g~iD~lVnnAG~~ 119 (296)
T 3k31_A 107 GSLDFVVHAVAFS 119 (296)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4689999877543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=83.76 E-value=2.1 Score=39.76 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=39.1
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 239 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK----EVGATE 239 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCce
Confidence 4678999999999765 55667777765 3348999999999887664 567653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=4 Score=36.01 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.+.+||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3567776664 5677777777553 345899999999988887777776663 488888998764311 01134
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++..+-
T Consensus 99 ~iD~lv~~Ag 108 (277)
T 2rhc_B 99 PVDVLVNNAG 108 (277)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998765
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=83.50 E-value=2.9 Score=37.73 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=46.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.+|| +.-|+|+.+.+++..+. .+.+|+++..+......+.... .+.- .+++++.+|..+...-......+|.|+
T Consensus 5 ~~~vl-VTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 5 SETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLL-DLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp -CEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHH-TSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCEEE-EECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHH-hcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 56777 55588999999887653 3358998887765333222211 1110 248889999876542211123579998
Q ss_pred ECC
Q 019692 215 LDP 217 (337)
Q Consensus 215 vDp 217 (337)
.-+
T Consensus 83 h~A 85 (337)
T 2c29_D 83 HVA 85 (337)
T ss_dssp ECC
T ss_pred Eec
Confidence 765
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=2.1 Score=39.72 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=39.3
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 238 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAK----EFGATE 238 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCce
Confidence 4678999999999765 55667777765 3348999999999888765 467654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=0.99 Score=40.23 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCeEEeecCCchhHHHHHHHHc------CCCCEEEEEeC-----CH----------------------HHHHH---HHHH
Q 019692 138 GWKVLDACSAPGNKTVHLAALM------KGKGKIVACEL-----NK----------------------ERVRR---LKDT 181 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~------~~~g~V~avD~-----~~----------------------~~l~~---l~~~ 181 (337)
.+.|+++|+..|+.+..++... +...+|+++|. .. +.++. ..++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 4599999999999988877642 23579999992 21 11221 1122
Q ss_pred HHHhCC--CcEEEEeccCCCCCCCC---CCCCCccEEEECCC
Q 019692 182 IKLSGA--ANIEVLHGDFLNLDPKD---PAYSEVRAILLDPS 218 (337)
Q Consensus 182 ~~~~g~--~~v~~~~~D~~~~~~~~---~~~~~fD~IlvDpP 218 (337)
.+++|. ++|+++.+++.+..+.. ....+||.|++|.-
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D 191 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD 191 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc
Confidence 234664 67999999987653221 11246999999974
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=83.18 E-value=2.3 Score=39.33 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=39.1
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||-.|+|+ |..+.++|+..+ .+|+++|.++++++.++ ++|...
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~ 236 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAF----ALGADH 236 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHH----HcCCCE
Confidence 4578999999999776 556777777653 58999999999887754 467754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.13 E-value=1.5 Score=40.82 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.9
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..+++|++||=.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~ 241 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAK----KFGVNE 241 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHH----TTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCcE
Confidence 4678999999999865 66677777775 3348999999999988654 567754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.04 E-value=1.9 Score=38.33 Aligned_cols=84 Identities=7% Similarity=0.049 Sum_probs=59.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC-CCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL-DPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~-~~~-------~~~~ 207 (337)
.+.+||=.| |+|+.+.+++..+ ..+.+|+.++.+...++.+.+.++..+-.++.++..|..+. ... ...+
T Consensus 11 ~~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 356777555 5577888877765 33469999999999998888888776656799999998875 210 0012
Q ss_pred CCccEEEECCCCCC
Q 019692 208 SEVRAILLDPSCSG 221 (337)
Q Consensus 208 ~~fD~IlvDpPCSg 221 (337)
+.+|+++..+--.+
T Consensus 90 g~iD~lv~nAg~~~ 103 (311)
T 3o26_A 90 GKLDILVNNAGVAG 103 (311)
T ss_dssp SSCCEEEECCCCCS
T ss_pred CCCCEEEECCcccc
Confidence 46899999876443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=82.82 E-value=1.3 Score=40.41 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCH----HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK----ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~----~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+||=.| |+|+.+.+++..+. .+.+|++++.+. ..+..+.+.+....-.++.++.+|..+...-......+|.
T Consensus 27 ~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 105 (352)
T 1sb8_A 27 PKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 105 (352)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred CCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence 56788555 67888888877653 345899999864 2344333322111013588999998764311111236899
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|+.-+.
T Consensus 106 vih~A~ 111 (352)
T 1sb8_A 106 VLHQAA 111 (352)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 998655
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.49 E-value=2.2 Score=39.39 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=39.0
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+.+++|++||-.|+|+ |..+.++|+.++ .+|+++|.++++++.+++ +|...
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~~ 226 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGADH 226 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCCE
Confidence 4688999999999865 556677777653 479999999988877654 67654
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=82.12 E-value=20 Score=34.41 Aligned_cols=78 Identities=21% Similarity=0.167 Sum_probs=53.4
Q ss_pred CeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHH---HHHHHHHHHHHhC--------CCcEEEEeccCCCCCCCCCC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKE---RVRRLKDTIKLSG--------AANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~---~l~~l~~~~~~~g--------~~~v~~~~~D~~~~~~~~~~ 206 (337)
.+|| +.-|+|..+.+++..+... .+|++++.++. ..+.+.+.++.+. ..++.++.+|..+...-. .
T Consensus 151 ~~VL-VTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~ 228 (508)
T 4f6l_B 151 GNTL-LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-L 228 (508)
T ss_dssp EEEE-ESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-C
T ss_pred CeEE-EECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-C
Confidence 4566 5568899999998887543 48999998766 4455555554431 246999999988744322 3
Q ss_pred CCCccEEEECCC
Q 019692 207 YSEVRAILLDPS 218 (337)
Q Consensus 207 ~~~fD~IlvDpP 218 (337)
...+|.|+.-+-
T Consensus 229 ~~~~D~Vih~Aa 240 (508)
T 4f6l_B 229 PENMDTIIHAGA 240 (508)
T ss_dssp SSCCSEEEECCC
T ss_pred ccCCCEEEECCc
Confidence 467999998554
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=81.91 E-value=6 Score=34.14 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~-~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
+.+||=.| |+|+.+.+++..+ ..+.+|++++. ++..++.+.+.++..+ .++.++..|..+..... ..++
T Consensus 7 ~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 7 GKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777555 5677888877755 33468999999 8888887777776655 35888889987643110 0123
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.|+..+-.
T Consensus 85 ~id~li~~Ag~ 95 (261)
T 1gee_A 85 KLDVMINNAGL 95 (261)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.72 E-value=3.2 Score=36.47 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.+||=.| |+|+.+.+++..+ ....+|+.++.+.+.++.+.+.+.. .+ .++.++..|..+..... ..+
T Consensus 19 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 366777555 4566777777755 3346899999999999888877765 45 35889999988754210 112
Q ss_pred CCccEEEECCCCC
Q 019692 208 SEVRAILLDPSCS 220 (337)
Q Consensus 208 ~~fD~IlvDpPCS 220 (337)
+.+|.++..+--.
T Consensus 97 g~id~lv~nAg~~ 109 (266)
T 4egf_A 97 GGLDVLVNNAGIS 109 (266)
T ss_dssp TSCSEEEEECCCC
T ss_pred CCCCEEEECCCcC
Confidence 4689999877533
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=81.63 E-value=4.6 Score=36.85 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=38.6
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..+++|++||-.|+|+ |..+.++++.. ..+|+++|.++++++.++ ++|..
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~ 210 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAK----ELGAD 210 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HCCCC
Confidence 4688999999999864 55667777765 259999999999988764 46765
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=81.61 E-value=9.5 Score=32.65 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC------CCCCCCCCcc
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD------PKDPAYSEVR 211 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~------~~~~~~~~fD 211 (337)
|.+||=.| |+|+.+.+++..+...+.|++++.++..++.+.+ ..++.++..|..+.. .....++.+|
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 5 KKIAVVTG-ATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp -CEEEEES-TTSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------STTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCEEEEEc-CCCHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 55677555 5567888888877667899999999888765543 245778888765431 1112245789
Q ss_pred EEEECCCC
Q 019692 212 AILLDPSC 219 (337)
Q Consensus 212 ~IlvDpPC 219 (337)
.++..+-.
T Consensus 78 ~lv~~Ag~ 85 (245)
T 3e9n_A 78 TLVHAAAV 85 (245)
T ss_dssp EEEECC--
T ss_pred EEEECCCc
Confidence 99987653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=81.13 E-value=3.4 Score=36.43 Aligned_cols=81 Identities=6% Similarity=0.037 Sum_probs=56.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
.|.+||=.| |+|+.+.+++..+ ..+.+|+.++.+...++.+.+.++..|. ++.++..|..+..... ..++
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 366777555 5667777777654 3346899999999999988888887774 3677888887643110 1124
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
..|.++.++--
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987753
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=81.11 E-value=1.8 Score=36.32 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=46.8
Q ss_pred eEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+||=. -|+|+.+.++++.+ ..+.+|++++.++..+..+. .+++++.+|..+... ..+..+|.|+.-+.
T Consensus 2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--------KDINILQKDIFDLTL--SDLSDQNVVVDAYG 70 (221)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--------SSSEEEECCGGGCCH--HHHTTCSEEEECCC
T ss_pred eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--------CCCeEEeccccChhh--hhhcCCCEEEECCc
Confidence 45534 46788888887765 33468999999987655432 457889999887654 22457899998654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=4.6 Score=34.38 Aligned_cols=79 Identities=9% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~-~~g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
+.+||=.| |+|+.+.+++..+. .+.+|+.++.+.+.++.+.+.+. ..| .++.++..|..+..... ..++
T Consensus 2 ~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 45666555 55667777777653 34689999999999888877775 445 45888999987643110 0124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++..+-
T Consensus 80 ~id~li~~Ag 89 (235)
T 3l77_A 80 DVDVVVANAG 89 (235)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 6899998765
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.93 E-value=3.7 Score=38.19 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=38.6
Q ss_pred hC-CCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LA-PKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~-~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+. +++|++||-.|+|+ |..+.++|+.+ +..+|++++.++++++.++ ++|.+.
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 243 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE----EIGADL 243 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH----HcCCcE
Confidence 46 78999999999664 44566777765 2248999999999887765 467754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=80.85 E-value=9 Score=33.14 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=53.8
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC-C
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY-S 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~-~ 208 (337)
+.+||=.| |+|+.+.+++..+ ..+..|++++.++..++.+.+.++..+. ++.++..|..+..... ..+ +
T Consensus 14 ~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 91 (266)
T 1xq1_A 14 AKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFGG 91 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56677554 5777888887755 3346899999999888887777766653 4888888887642110 001 4
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.|+..+-
T Consensus 92 ~id~li~~Ag 101 (266)
T 1xq1_A 92 KLDILINNLG 101 (266)
T ss_dssp CCSEEEEECC
T ss_pred CCcEEEECCC
Confidence 6899998764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=6 Score=37.27 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=45.6
Q ss_pred CCeEEeecCCchhHHHHHHHHc----------------CCCCEEEEEeCCHH---HH----HHHHHHH-HHhCC-CcEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALM----------------KGKGKIVACELNKE---RV----RRLKDTI-KLSGA-ANIEV 192 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~----------------~~~g~V~avD~~~~---~l----~~l~~~~-~~~g~-~~v~~ 192 (337)
..+|+|+||++|..|+.+...+ .+.-.|+..|+-.. .+ ....+.+ +..|- .+-.+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 4789999999999998877761 13357889998511 11 1111112 22332 12345
Q ss_pred EeccCCCCCCCCCCCCCccEEEEC
Q 019692 193 LHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 193 ~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+.+....+....-..++||+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss 156 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSC 156 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEE
T ss_pred EEecchhhhhccCCCCceEEEEec
Confidence 666655544332223689999864
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=80.65 E-value=5.5 Score=34.64 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCC-------CCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKD-------PAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~-------~~~~ 208 (337)
|.+||=.| |+|+.+.+++..+. .+.+|+.++.++..++.+.+.++.. |. ++.++..|..+...-. ..++
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 7 GKVAVITG-SSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56777555 55677877777553 3458999999998888777666554 53 5888889987643110 0124
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
.+|.++..+-
T Consensus 85 ~id~lv~~Ag 94 (263)
T 3ai3_A 85 GADILVNNAG 94 (263)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998765
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.58 E-value=5.1 Score=36.42 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=58.7
Q ss_pred CeEEeecCCchhHHHHHHHHcCCC--CEEEEEeCCHH---HHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCCCccE
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKE---RVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~--g~V~avD~~~~---~l~~l~~~~~~~g~~~v~~~~~-D~~~~~~~~~~~~~fD~ 212 (337)
.+|-=+| .|..+..++..+... ..|+++|.+++ +.+...+.+...|+ .. +..+. ....|+
T Consensus 25 m~IgvIG--~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~s~~e~------~~~aDv 90 (317)
T 4ezb_A 25 TTIAFIG--FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV------EPLDDVAG------IACADV 90 (317)
T ss_dssp CEEEEEC--CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEESSGGG------GGGCSE
T ss_pred CeEEEEC--ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC------CCCCHHHH------HhcCCE
Confidence 3566565 455566666655444 48999999972 33333344445554 12 22222 134689
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 292 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~ 292 (337)
|++=.|-. .. .+.+......+++|.+|-.++|+.+...+.+.+.+
T Consensus 91 Vi~avp~~---------------------------~~--------~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l 135 (317)
T 4ezb_A 91 VLSLVVGA---------------------------AT--------KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAI 135 (317)
T ss_dssp EEECCCGG---------------------------GH--------HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHH
T ss_pred EEEecCCH---------------------------HH--------HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH
Confidence 99866511 01 11234444556667777777788887777666544
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=80.58 E-value=2.6 Score=37.22 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|=.| |+|+.+.+++..+ ..+.+|+.++.++..++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 366777555 5666777777755 3346899999999999988888877763 588888898764311 01134
Q ss_pred CccEEEECCCC
Q 019692 209 EVRAILLDPSC 219 (337)
Q Consensus 209 ~fD~IlvDpPC 219 (337)
.+|.++..+--
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987753
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=80.48 E-value=5.8 Score=35.17 Aligned_cols=123 Identities=9% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHH-------HHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKE-------RVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---- 204 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~-------~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---- 204 (337)
.|.++|=.|++ |+.+.+++..+. .+.+|+.++.+.. .++.+.+.++..|. ++.++..|..+.....
T Consensus 8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHH
Confidence 36677766655 567777777653 3458999999876 46666666666663 5888999987643110
Q ss_pred ---CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHH----HHHHHHHHHHhCCCC---CcEEE
Q 019692 205 ---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLS----AFQKKALRHALSFPG---VERVV 274 (337)
Q Consensus 205 ---~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~----~~Q~~lL~~A~~~~~---~G~lv 274 (337)
..++.+|.++..+--...+.+. ..+.++..+.- .-...+++.++..++ .|.+|
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~-----------------~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv 148 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIE-----------------EVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHIL 148 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTT-----------------TSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEE
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcc-----------------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1124689999876533222110 11344444322 234456666666442 37888
Q ss_pred EEcC
Q 019692 275 YSTC 278 (337)
Q Consensus 275 YsTC 278 (337)
+.+.
T Consensus 149 ~isS 152 (285)
T 3sc4_A 149 TLSP 152 (285)
T ss_dssp ECCC
T ss_pred EECC
Confidence 8654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.45 E-value=17 Score=31.72 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTI-KLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~-~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.++|=.| |+|+.+.+++..+. .+.+|+.++.++..++.+.+.+ +..|. ++.++..|..+..... ..+
T Consensus 20 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356677665 55777877777553 3468999999998888777666 44453 4778888987642110 012
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.++..+-.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.35 E-value=6.6 Score=34.56 Aligned_cols=81 Identities=10% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~-~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 207 (337)
.|.++|=.|++ |+.+.+++..+. .+.+|+.++. +...++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46778877755 567777776553 3457888755 46777877777777764 4888889987643110 112
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
+.+|.++..+--
T Consensus 108 g~iD~lvnnAg~ 119 (271)
T 3v2g_A 108 GGLDILVNSAGI 119 (271)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 468999987753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.20 E-value=3.3 Score=38.89 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=38.4
Q ss_pred CCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.+++|++||=.|+|+ |..+.++|+.+ +..+|+++|.++++++.++ ++|...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 261 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAK----ELGADH 261 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCCE
Confidence 578999999998865 55567777765 3348999999999988765 467653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 7e-34 | |
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 3e-21 | |
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 6e-20 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-09 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-08 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-07 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 6e-07 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-06 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 1e-04 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-04 | |
| d2oyra1 | 250 | c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi | 3e-04 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.001 |
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (311), Expect = 7e-34
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 27/248 (10%)
Query: 65 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 105
PR+VRVNTLK D V +Q D L+P+LL+ P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 165
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 166 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 225
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 226 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 285
+ +L+ S RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 183 SRQLEEPGAGTPSPV--------RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 234
Query: 286 EDVIKSVL 293
EDV++ L
Sbjct: 235 EDVVRDAL 242
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 90.5 bits (223), Expect = 3e-21
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 14/245 (5%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPG-CDL 108
E + + + + P PR RVNTLK+ V V L K+ F ++ + L +
Sbjct: 28 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 87
Query: 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 168
P + G +++Q +S AL PKPG V D +APG KT +LA LM+ G I A
Sbjct: 88 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 147
Query: 169 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 228
++++ R+R + + G N+ + H L++ + + ILLD C+GSG
Sbjct: 148 DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF---DKILLDAPCTGSG----- 199
Query: 229 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 288
+ + +++ L + L G +VYSTCS+ ENE V
Sbjct: 200 --TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG--ILVYSTCSLEPEENEFV 255
Query: 289 IKSVL 293
I+ L
Sbjct: 256 IQWAL 260
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 85.9 bits (211), Expect = 6e-20
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 13/244 (5%)
Query: 51 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 109
E ++ + + P ++R+N DS + L + + PD + L +H
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74
Query: 110 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 169
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + A +
Sbjct: 75 ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133
Query: 170 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 229
++++R+ R+ D +K G + ILLD CS +G
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD--RILLDAPCSATGVIRRHP 191
Query: 230 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289
D ++ L +L + +VY+TCS+ EN I
Sbjct: 192 DIK-------WLRRDRDIPELAQLQSEI--LDAIWPHLKTGGTLVYATCSVLPEENSLQI 242
Query: 290 KSVL 293
K+ L
Sbjct: 243 KAFL 246
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 6e-09
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 98 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 157
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 60 QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118
Query: 158 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 206
+ +G++++ E+ K+ K K + N++ +H D +D
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIK 177
Query: 207 YSEVRAILLD 216
A+ LD
Sbjct: 178 SLTFDAVALD 187
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.0 bits (124), Expect = 1e-08
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 127 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98
Query: 181 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219
++ NI L D +V I D +
Sbjct: 99 LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.2 bits (114), Expect = 4e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 127 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 179
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 180 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS-GTAAERLDHLLPSH 236
+ NI + GD + +V I D + + + L
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 47.4 bits (112), Expect = 6e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 77 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 132
V + LG V++ D + ++ +I + +S +
Sbjct: 22 VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80
Query: 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 192
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 193 LHGDFLNLDPKDPAYSEVRAILLDPSC 219
+ D Y V A + DP
Sbjct: 141 TSRSDIADFISDQMYDAVIADIPDPWN 167
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183
K ++ + PG +VL+A + G T+ L + G++++ E + + +
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 184 LSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILLDP 217
N ++ D + + D + +L P
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAP 179
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 187
+ G + LD S G +HL G ++VA + + E +RR ++ +L+G
Sbjct: 136 ENRLYMERFRGERALDVFSYAGGFALHL---ALGFREVVAVDSSAEALRRAEENARLNGL 192
Query: 188 ANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
N+ VL + +L + E ++LDP P+ A G
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGERFDLVVLDP----------------PAFAKGKKDVERA 236
Query: 247 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 281
+++ K L+ G + ++CS H
Sbjct: 237 YRAYKEVNLRAIKLLK-----EG-GILATASCSHH 265
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 186
++ P +D G T+ L ++ A + N E + + ++ G
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 187 AANIEVLHGDFLNLDPKDPAYSEVRAI 213
N+ ++ GD K P
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVG 107
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 123 GKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 180
G VA A+ K V+DA + G LA++ ++ E N L D
Sbjct: 72 GGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDD 128
Query: 181 TIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 231
+ A ++++H L +V + LDP +A
Sbjct: 129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV--VYLDPMFPHKQKSALVKKE 186
Query: 232 L-LPSHASGHTADPTEMERLNKLSAFQK 258
+ + G D + +L A ++
Sbjct: 187 MRVFQSLVGPDLDADGLLEPARLLATKR 214
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.1 bits (85), Expect = 0.001
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188
V L P+ +LD G + + G +I+ +++ E +R ++ +K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-D 72
Query: 189 NIEVLHGDFLNLD--PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 246
+ + + D K +V IL+D S +L +
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-----TYQLKGENRELENLKEFLKKA 127
Query: 247 MERLNKLSAF 256
+ LN
Sbjct: 128 EDLLNPGGRI 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.85 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.79 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.78 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.67 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.65 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.63 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.61 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.58 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.58 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.57 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.57 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.53 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.42 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.41 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.39 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.39 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.33 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.33 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.32 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.3 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.3 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.28 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.25 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.21 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.2 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.2 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.18 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.18 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.17 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.17 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.12 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.12 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.11 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.11 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.11 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.09 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.08 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.08 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.07 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.06 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.06 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.05 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.04 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.98 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.96 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.95 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.9 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.89 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.88 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.87 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.87 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.87 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.86 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.84 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.83 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.83 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.82 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.8 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.8 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.74 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.71 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.66 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.61 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.59 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.54 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.47 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.37 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.32 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.24 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.18 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.04 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.93 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.93 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.9 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.87 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.59 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.51 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.49 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.47 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.41 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.29 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.2 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.14 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.79 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.75 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.73 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.5 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 96.43 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.36 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.33 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.07 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.97 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.91 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.08 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.04 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.93 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.89 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.86 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.76 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.72 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.58 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 94.57 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.34 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.47 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.23 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.23 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.23 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.87 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.79 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.45 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 89.95 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.84 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.46 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.31 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.8 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 86.45 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.59 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 85.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 85.35 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 85.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 84.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 83.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 83.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.23 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.08 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.02 |
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-60 Score=436.54 Aligned_cols=277 Identities=22% Similarity=0.257 Sum_probs=242.3
Q ss_pred cHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCCCCC
Q 019692 30 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDL 108 (337)
Q Consensus 30 ~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
||.||. .+|...+| ++++++++++++ ++|+|+|||++|++.+++.+.|++ ++...+++++|+++.++....+
T Consensus 1 HP~WLv---~~~~~~~g-ee~~~l~~a~~~---~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l 73 (284)
T d1sqga2 1 HPSWLL---KRLQKAYP-EQWQSIVEANNQ---RPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPV 73 (284)
T ss_dssp SCHHHH---HHHHHHCT-TTHHHHHHHHTS---CCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCG
T ss_pred CcHHHH---HHHHHHCH-HHHHHHHHHCCC---CCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccch
Confidence 678884 57777888 468999999984 779999999999999999999977 7888999999999999888889
Q ss_pred CCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 109 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 109 ~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
..++.|++|++++||.+|++++.++++++|++|||+||||||||++|++++. ++.|+|+|+++.+++.++++++++|++
T Consensus 74 ~~~~~~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~ 152 (284)
T d1sqga2 74 HALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK 152 (284)
T ss_dssp GGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC
T ss_pred hhChhhhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999865 489999999999999999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 019692 189 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 268 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~ 268 (337)
++.+...|........ ...||.||+||||||+|+++|+||++|. ++++++.+++++|++||++|++++
T Consensus 153 ~~~~~~~~~~~~~~~~--~~~fd~IL~DaPCSg~G~~rr~p~~~~~----------~~~~~~~~l~~lQ~~iL~~a~~~l 220 (284)
T d1sqga2 153 ATVKQGDGRYPSQWCG--EQQFDRILLDAPCSATGVIRRHPDIKWL----------RRDRDIPELAQLQSEILDAIWPHL 220 (284)
T ss_dssp CEEEECCTTCTHHHHT--TCCEEEEEEECCCCCGGGTTTCTTHHHH----------CCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred ceeeeccccccchhcc--cccccEEEEeccccccCccccccchhhc----------cccchhhHHHHHHHHHHHHHHHhc
Confidence 8877777655332222 2579999999999999999999998652 367889999999999999999998
Q ss_pred CC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCCCCCCcchhhcccceeeeeecCCCCCCCCCC
Q 019692 269 GV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 269 ~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~ 337 (337)
++ |.|||||||++++|||+||++||+ ++++|+++..... ..+. .+++||.++|+|+|+
T Consensus 221 k~gG~lvYsTCS~~~~ENE~vv~~~l~--~~~~~~~~~~~~~-------~~~~--~~~~P~~~~~dGFF~ 279 (284)
T d1sqga2 221 KTGGTLVYATCSVLPEENSLQIKAFLQ--RTADAELCETGTP-------EQPG--KQNLPGAEEGDGFFY 279 (284)
T ss_dssp EEEEEEEEEESCCCGGGTHHHHHHHHH--HCTTCEECSSBCS-------SSBS--EEECCCTTSCCSEEE
T ss_pred CCCceEEEeeecCchhhCHHHHHHHHH--hCCCcEEecCCCC-------CCCc--EEECCCCCCcccEEE
Confidence 87 899999999999999999999995 4778988653111 1122 589999999999995
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.2e-60 Score=441.29 Aligned_cols=287 Identities=27% Similarity=0.369 Sum_probs=242.0
Q ss_pred HHcHHHHHHHHHHHHHHcCcccHHHHHHhcCCCCCCCCeEEEEcCCCCCHHHHHHHHcc-CCceeecCCCCCeEEeCCC-
Q 019692 28 MLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG- 105 (337)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~p~~~RvN~lk~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~- 105 (337)
+.|+.||.. +|+..+| ++++++++++++ ++|+|+|||++|++.+++++.|++ ++.+++++++|+++.+...
T Consensus 12 ~~~p~wl~~---~~~~~~G-ee~~~l~~a~~~---~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 84 (313)
T d1ixka_ 12 LGYSKLFAD---RYFQLWG-ERAIRIAEAMEK---PLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREP 84 (313)
T ss_dssp TTCCHHHHH---HHHHHHT-THHHHHHHHTTS---CCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECS
T ss_pred cCCCHHHHH---HHHHHhh-HHHHHHHHHcCC---CCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCC
Confidence 467777754 6777788 468999999984 779999999999999999999977 8999999999999988543
Q ss_pred CCCCCchhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 106 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 106 ~~~~~~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
.++..++.|++|++++||.+|++++.++++++|++|||+|||||+||++++..+.+.+.|+|+|+++.+++.++++++++
T Consensus 85 ~~l~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~ 164 (313)
T d1ixka_ 85 FSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL 164 (313)
T ss_dssp SCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred CccccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 186 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 186 g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
|+.||.++..|...++... ..||.||+||||||+|+++++|+..|. ++++++.+++++|.+||.+|+
T Consensus 165 ~~~~i~~~~~d~~~~~~~~---~~fD~ILvDaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~ 231 (313)
T d1ixka_ 165 GVLNVILFHSSSLHIGELN---VEFDKILLDAPCTGSGTIHKNPERKWN----------RTMDDIKFCQGLQMRLLEKGL 231 (313)
T ss_dssp TCCSEEEESSCGGGGGGGC---CCEEEEEEECCTTSTTTCC------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccccccccccccccc---ccccEEEEccccccCCceeeccchhhh----------hhhhHHHHHHHHHHHHHHhhh
Confidence 9999999999988775432 579999999999999999999998653 378999999999999999999
Q ss_pred CCCCC-cEEEEEcCCCCcccCHHHHHHHhchhcCCCcEEecCC---CCCCc-chhhccc--ceeeeeecCCCCCCCCCC
Q 019692 266 SFPGV-ERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPF---PNGTA-EASQFLK--ALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 266 ~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~--~~~~~f~p~~~~~~~~~~ 337 (337)
+++++ |.|||||||++++|||+||++||+ +.++++++.. |.|.. .+..+.+ ..++|+.|+.++|.|+|+
T Consensus 232 ~~lk~gG~lVYsTCSl~~eENE~VV~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 307 (313)
T d1ixka_ 232 EVLKPGGILVYSTCSLEPEENEFVIQWALD---NFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFI 307 (313)
T ss_dssp HHEEEEEEEEEEESCCCGGGTHHHHHHHHH---HSSEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEE
T ss_pred heeCCCcEEEEeeccCChHhHHHHHHHHHh---cCCCEEeecccCCccccCccccccccccCCcEEECCCCCCcccEEE
Confidence 99887 899999999999999999999995 3467776421 22222 2222211 124799999999999995
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-59 Score=431.10 Aligned_cols=264 Identities=42% Similarity=0.679 Sum_probs=220.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHcc-CCc------------------eeecCCCCCeEEeCCCCCCCCchhhhcCeEEEech
Q 019692 64 KPRYVRVNTLKMDVDSAVLELGK-QFV------------------VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGK 124 (337)
Q Consensus 64 ~p~~~RvN~lk~~~~~~~~~L~~-~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ 124 (337)
.|+|+||||+|++.+++.+.|++ ++. +..++++|+.+.++....+..++.|++|++++||.
T Consensus 2 lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD~ 81 (293)
T d2b9ea1 2 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDR 81 (293)
T ss_dssp CCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcCC
Confidence 69999999999999999999865 432 35578999999999888999999999999999999
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
+|++++.++++++|++|||+|||||+||+++|+++++.++|+|+|+++.+++.++++++++|+.|+.+...|+..+.+.+
T Consensus 82 sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~ 161 (293)
T d2b9ea1 82 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD 161 (293)
T ss_dssp GGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC
T ss_pred cccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCccc
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVE 284 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~E 284 (337)
+...+||+||+||||||+|+++++|+..|... ++..++..++.+|+++|.+|+.++++|+|||||||++++|
T Consensus 162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~--------~~~~~~~~l~~~Q~~il~~a~~l~~gG~lvYsTCSl~~~E 233 (293)
T d2b9ea1 162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGT--------PSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEE 233 (293)
T ss_dssp GGGTTEEEEEECCCCCC--------------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEESCCCGGG
T ss_pred cccceeeEEeecCcccchhhhcccchhhccCC--------cchhhHHHHhhhhHHhHHHhhhcccccEEEEeeccCChhH
Confidence 55678999999999999999999998755321 1344578999999999999998765699999999999999
Q ss_pred CHHHHHHHhchhcCCC-cEEecCCCCCCcchhhccc--ceeeeeecCCCCCCCCCC
Q 019692 285 NEDVIKSVLPIAMSFG-FQLATPFPNGTAEASQFLK--ALSIYFEPIQWKTKKAFL 337 (337)
Q Consensus 285 Ne~vv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~f~p~~~~~~~~~~ 337 (337)
||+||++||+ ++++ |++++..+.|...+....+ ..++|+.||.+.|+|+|+
T Consensus 234 Ne~vV~~~L~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 287 (293)
T d2b9ea1 234 NEDVVRDALQ--QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFV 287 (293)
T ss_dssp THHHHHHHHT--TSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEE
T ss_pred hHHHHHHHHH--hCCCCEEeccCcccccccccccCCCCCCEEEECCCCCCccCEEE
Confidence 9999999996 3554 8888888889877754322 234799999999999995
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=4e-22 Score=185.13 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=128.4
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...+++|.|..|.....+. ....|.+|||+|||+|++++++|.. ..+|+++|+|+.+++.+++|++++|++++
T Consensus 123 ~~~~~tG~flDqr~~r~~~----~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~ 195 (318)
T d1wxxa2 123 RAGQKTGAYLDQRENRLYM----ERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV 195 (318)
T ss_dssp STTSCCCCCGGGHHHHHHG----GGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred hhccccccchhhhhhHHHH----HHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCc
Confidence 4568899999998776432 2346999999999999999988753 46899999999999999999999999999
Q ss_pred EEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 191 EVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 191 ~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+++++|+.++.... ....+||+|++||||++.+. ..+......|.+++..++++++
T Consensus 196 ~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~-----------------------~~~~~~~~~~~~l~~~a~~lLk 252 (318)
T d1wxxa2 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGK-----------------------KDVERAYRAYKEVNLRAIKLLK 252 (318)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCST-----------------------TSHHHHHHHHHHHHHHHHHTEE
T ss_pred ceeeccHHHHhhhhHhhhcCCCEEEEcCCccccch-----------------------HHHHHHHHHHHHHHHHHHHHcC
Confidence 99999987643211 01257999999999998652 1345667788999999999998
Q ss_pred C-cEEEEEcCC--CCcccCHHHHHHHhchhcCCCcEEe
Q 019692 270 V-ERVVYSTCS--IHQVENEDVIKSVLPIAMSFGFQLA 304 (337)
Q Consensus 270 ~-G~lvYsTCS--~~~~ENe~vv~~~l~~~~~~~~~~~ 304 (337)
+ |.|||+||| +..++-+++|......+ +..+++.
T Consensus 253 pGG~Lv~~scs~~~~~~~f~~~v~~a~~~a-~~~~~~~ 289 (318)
T d1wxxa2 253 EGGILATASCSHHMTEPLFYAMVAEAAQDA-HRLLRVV 289 (318)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCEEEEEeCCcccCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 7 899999999 56677788887776533 3344543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1e-19 Score=169.27 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=122.6
Q ss_pred hhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 019692 112 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NI 190 (337)
Q Consensus 112 ~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v 190 (337)
..++.|.+..|.....++...+ ++|.+|||+|||+|+++++++.. +..+|+++|+++.+++.+++|++.+|+. ++
T Consensus 122 ~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~ 197 (324)
T d2as0a2 122 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 197 (324)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccc
Confidence 4568899999998888887654 67999999999999999988764 4569999999999999999999999995 69
Q ss_pred EEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 019692 191 EVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 269 (337)
Q Consensus 191 ~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~ 269 (337)
+++++|+.+..... ....+||+|++||||++.+ ++......+.+.+++..|+++++
T Consensus 198 ~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~-----------------------~~~~~~~~~~y~~l~~~a~~ll~ 254 (324)
T d2as0a2 198 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-----------------------EKDLKAGLRAYFNVNFAGLNLVK 254 (324)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-----------------------GGGHHHHHHHHHHHHHHHHTTEE
T ss_pred eeeechhhhhhHHHHhccCCCCchhcCCccccCC-----------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986542110 0125799999999998753 22345566678999999999998
Q ss_pred C-cEEEEEcCCCCcc--cCHHHHHHHh
Q 019692 270 V-ERVVYSTCSIHQV--ENEDVIKSVL 293 (337)
Q Consensus 270 ~-G~lvYsTCS~~~~--ENe~vv~~~l 293 (337)
+ |.|||+|||-+-. +-.++|....
T Consensus 255 pGG~lv~~s~s~~~~~~~f~~~v~~a~ 281 (324)
T d2as0a2 255 DGGILVTCSCSQHVDLQMFKDMIIAAG 281 (324)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCccCCHHHHHHHHHHHH
Confidence 7 8999999997653 3345555544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.78 E-value=3.7e-20 Score=171.50 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred chhhhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019692 111 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 188 (337)
Q Consensus 111 ~~~~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-- 188 (337)
...+++|.|..|.......+. ...+|.+|||+|||+|+++++++. ++...|+++|+++.+++.+++|++.+|+.
T Consensus 120 ~~g~ktGlflDqR~~r~~l~~--~~~~g~~VLdlf~~~G~~sl~aa~--~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~ 195 (317)
T d2b78a2 120 NDGLMTGIFLDQRQVRNELIN--GSAAGKTVLNLFSYTAAFSVAAAM--GGAMATTSVDLAKRSRALSLAHFEANHLDMA 195 (317)
T ss_dssp SSSSCCSSCGGGHHHHHHHHH--TTTBTCEEEEETCTTTHHHHHHHH--TTBSEEEEEESCTTHHHHHHHHHHHTTCCCT
T ss_pred ccccccCCcHHHHHHHHHHHH--HhhCCCceeecCCCCcHHHHHHHh--CCCceEEEecCCHHHHHHHHHHHHHhcccCc
Confidence 456789999888876554433 235799999999999999987765 35578999999999999999999999984
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 019692 189 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 267 (337)
Q Consensus 189 ~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~ 267 (337)
+++++.+|+.+..... ....+||+|++|||+.+.. ++.+....+.+.+++..|+++
T Consensus 196 ~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~-----------------------~~~~~~~~~~~~~L~~~a~~l 252 (317)
T d2b78a2 196 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARN-----------------------KKEVFSVSKDYHKLIRQGLEI 252 (317)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------------------------CCCCHHHHHHHHHHHHHHT
T ss_pred ceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccc-----------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 6999999986653211 1125799999999977632 111223445678899999999
Q ss_pred CCC-cEEEEEcCCCCc--ccCHHHHHHHhc
Q 019692 268 PGV-ERVVYSTCSIHQ--VENEDVIKSVLP 294 (337)
Q Consensus 268 ~~~-G~lvYsTCS~~~--~ENe~vv~~~l~ 294 (337)
+++ |.|+|||||-+- ++-+..|.....
T Consensus 253 l~pgG~l~~~scs~~~~~~~f~~~v~~a~~ 282 (317)
T d2b78a2 253 LSENGLIIASTNAANMTVSQFKKQIEKGFG 282 (317)
T ss_dssp EEEEEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEeCCccCCHHHHHHHHHHHHH
Confidence 987 899999999544 444577766663
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=1.3e-16 Score=142.29 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=107.0
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~ 205 (337)
.++...++++||++|||+|||+|+.|..||+.+++.|+|+++|+++++++.+++|++++ +..||++.++|+.+..+.
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-- 152 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-- 152 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc--
Confidence 34456689999999999999999999999999988899999999999999999999987 457899999999876432
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEE-EEcCCCCcc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVV-YSTCSIHQV 283 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lv-YsTCS~~~~ 283 (337)
..||.|++|.|.. ...|+++.+.+++ |.++ |+.|.
T Consensus 153 --~~fD~V~ld~p~p-------------------------------------~~~l~~~~~~LKpGG~lv~~~P~i---- 189 (250)
T d1yb2a1 153 --QMYDAVIADIPDP-------------------------------------WNHVQKIASMMKPGSVATFYLPNF---- 189 (250)
T ss_dssp --CCEEEEEECCSCG-------------------------------------GGSHHHHHHTEEEEEEEEEEESSH----
T ss_pred --ceeeeeeecCCch-------------------------------------HHHHHHHHHhcCCCceEEEEeCCc----
Confidence 5799999998821 1358888888887 6554 55553
Q ss_pred cCHHHHHHHhchhcCCCcEEec----CCCCCCcchhhcccc
Q 019692 284 ENEDVIKSVLPIAMSFGFQLAT----PFPNGTAEASQFLKA 320 (337)
Q Consensus 284 ENe~vv~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 320 (337)
++++++++..+..||.... ....|..++...++.
T Consensus 190 ---~Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~~~~RP~ 227 (250)
T d1yb2a1 190 ---DQSEKTVLSLSASGMHHLETVELMKRRILVREGATRPA 227 (250)
T ss_dssp ---HHHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTCCCCG
T ss_pred ---ChHHHHHHHHHHCCCceeEEEEEEeEEEEEcCCccCCC
Confidence 4455555433455675432 235676665555444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=3.7e-16 Score=137.56 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=104.7
Q ss_pred hHHHHHH------hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019692 126 SSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 199 (337)
Q Consensus 126 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~ 199 (337)
|.+++.+ +.++||++|||+|||+|+.+.++|+.++++|+|+|+|+++.+++.+++++++. .|+..+..|+..
T Consensus 56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~ 133 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATK 133 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTC
T ss_pred cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCC
Confidence 5555555 34789999999999999999999999999999999999999999999998765 468888888876
Q ss_pred CCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE--
Q 019692 200 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS-- 276 (337)
Q Consensus 200 ~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs-- 276 (337)
..........+|+|++|.+|... +..++.++..++++ |.++.+
T Consensus 134 ~~~~~~~~~~vD~i~~d~~~~~~----------------------------------~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 134 PEEYRALVPKVDVIFEDVAQPTQ----------------------------------AKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp GGGGTTTCCCEEEEEECCCSTTH----------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccceEEEEEEccccch----------------------------------HHHHHHHHHHhcccCCeEEEEEE
Confidence 54333234679999999986531 24578888888887 766654
Q ss_pred cCCCCcccCHHHHHHHhchhcCCCcEEec
Q 019692 277 TCSIHQVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 277 TCS~~~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
++|+...++...|.+..+.....+|++..
T Consensus 180 a~~~~~~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 180 SRSIDVTKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp GGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24444444444443333222345787754
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=5.2e-16 Score=139.86 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=117.3
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEE
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVL 193 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~ 193 (337)
+.+.-++..+.+.+++..++++||++|||+|||+|+.|..+|+.+++.|+|+++|+++++++.+++|++++|+ +++.+.
T Consensus 81 ~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~ 160 (266)
T d1o54a_ 81 KRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 160 (266)
T ss_dssp CC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred cCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE
Confidence 4444555667788889999999999999999999999999999998889999999999999999999999998 569999
Q ss_pred eccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cE
Q 019692 194 HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ER 272 (337)
Q Consensus 194 ~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~ 272 (337)
..|...... ...||.|++|.|. | .+.|+++.++|++ |.
T Consensus 161 ~~d~~~~~~----~~~~D~V~~d~p~---------p----------------------------~~~l~~~~~~LKpGG~ 199 (266)
T d1o54a_ 161 VRDISEGFD----EKDVDALFLDVPD---------P----------------------------WNYIDKCWEALKGGGR 199 (266)
T ss_dssp CCCGGGCCS----CCSEEEEEECCSC---------G----------------------------GGTHHHHHHHEEEEEE
T ss_pred ecccccccc----ccceeeeEecCCC---------H----------------------------HHHHHHHHhhcCCCCE
Confidence 888654322 2569999999882 1 1458888888887 66
Q ss_pred E-EEEcCCCCcccCHHHHHHHhchhcCCCcEEec----CCCCCCcchhhcccc
Q 019692 273 V-VYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT----PFPNGTAEASQFLKA 320 (337)
Q Consensus 273 l-vYsTCS~~~~ENe~vv~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 320 (337)
+ +|+.|. ++++++++..+..+|.... -...|..++...++.
T Consensus 200 lv~~~P~~-------~Qv~~~~~~l~~~gF~~i~~~E~l~R~~~~~~~~vRP~ 245 (266)
T d1o54a_ 200 FATVCPTT-------NQVQETLKKLQELPFIRIEVWESLFRPYKPVPERLRPV 245 (266)
T ss_dssp EEEEESSH-------HHHHHHHHHHHHSSEEEEEEECCCCCCEECCTTSCEEC
T ss_pred EEEEeCcc-------cHHHHHHHHHHHCCceeEEEEEEEEEEEEecCCccCCC
Confidence 5 476653 4555555433445776432 234565555444433
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.61 E-value=1.3e-16 Score=146.06 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=114.7
Q ss_pred CchhhhcCeEEEechhhHHHHHHhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 110 VHPLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 110 ~~~~~~~G~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
-...++.|.|..|......+...+. ..+|.+|||+|||+|+++++++.. ..+|++||.|+.+++.+++|++.+|+.
T Consensus 104 ~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~ 180 (309)
T d2igta1 104 FTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE 180 (309)
T ss_dssp CCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT
T ss_pred ccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhccc
Confidence 3567789999999999988776553 456889999999999999988763 358999999999999999999999985
Q ss_pred --cEEEEeccCCCCCCCC-CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 019692 189 --NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHAL 265 (337)
Q Consensus 189 --~v~~~~~D~~~~~~~~-~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~ 265 (337)
+++++++|+.++.... ....+||+|++|||+.+.|.-. + .+ .+.+.+..++..+.
T Consensus 181 ~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~---~-------------~~------~~~~~~~~l~~~~~ 238 (309)
T d2igta1 181 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG---E-------------VW------QLFDHLPLMLDICR 238 (309)
T ss_dssp TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC---C-------------EE------EHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccc---h-------------hH------HHHHHHHHHHHHHH
Confidence 4999999987653211 0125799999999988765210 0 01 12233456777777
Q ss_pred CCCCC-c-EEEEEcCCCC--cccCHHHHHHHh
Q 019692 266 SFPGV-E-RVVYSTCSIH--QVENEDVIKSVL 293 (337)
Q Consensus 266 ~~~~~-G-~lvYsTCS~~--~~ENe~vv~~~l 293 (337)
.++++ | .|+.++||.. +.+-++.+...+
T Consensus 239 ~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~ 270 (309)
T d2igta1 239 EILSPKALGLVLTAYSIRASFYSMHELMRETM 270 (309)
T ss_dssp HTBCTTCCEEEEEECCTTSCHHHHHHHHHHHT
T ss_pred HhcCCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 88775 5 4555555643 334455666655
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=2.5e-15 Score=134.82 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=87.9
Q ss_pred hhcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcE
Q 019692 114 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANI 190 (337)
Q Consensus 114 ~~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g---~~~v 190 (337)
.+.+.-++..+.+.++...++++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.+++|+++.+ ..|+
T Consensus 73 ~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv 152 (264)
T d1i9ga_ 73 MPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW 152 (264)
T ss_dssp SCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE
T ss_pred ccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceE
Confidence 3445555666677788888999999999999999999999999999999999999999999999999999862 4689
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 191 EVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 191 ~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
.++++|+.+....+ ..||.|++|.|
T Consensus 153 ~~~~~d~~~~~~~~---~~fDaV~ldlp 177 (264)
T d1i9ga_ 153 RLVVSDLADSELPD---GSVDRAVLDML 177 (264)
T ss_dssp EEECSCGGGCCCCT---TCEEEEEEESS
T ss_pred EEEecccccccccC---CCcceEEEecC
Confidence 99999998765432 67999999988
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=5.7e-15 Score=128.37 Aligned_cols=135 Identities=24% Similarity=0.174 Sum_probs=104.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++||++|||+|||+|+.+.++++.++ .++|+|+|+++.+++.+++++++.+ |+.++.+|+.........+..+|.
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 5689999999999999999999999984 5799999999999999999998864 899999999887654444567888
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE---EcCCCCcccCHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY---STCSIHQVENEDV 288 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY---sTCS~~~~ENe~v 288 (337)
|+.|.++.. .+..+|.++.+++++ |.++. +.|+-...+.+.+
T Consensus 129 v~~~~~~~~----------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~ 174 (209)
T d1nt2a_ 129 IYQDIAQKN----------------------------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV 174 (209)
T ss_dssp EEECCCSTT----------------------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH
T ss_pred EEecccChh----------------------------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHH
Confidence 888876321 024568888888886 76654 4566666777777
Q ss_pred HHHHhchhcCCCcEEec
Q 019692 289 IKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 289 v~~~l~~~~~~~~~~~~ 305 (337)
.+...+.. ..+|++..
T Consensus 175 ~~~~~~~l-~~gf~i~E 190 (209)
T d1nt2a_ 175 FKSVLKEM-EGDFKIVK 190 (209)
T ss_dssp HHHHHHHH-HTTSEEEE
T ss_pred HHHHHHHH-HcCCEEEE
Confidence 77766432 35787754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.2e-15 Score=137.23 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=95.1
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCcE
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AANI 190 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----------~~~v 190 (337)
-.+.+.++...++++||++|||+|||+|+.|.+||..+++.|+|+++|+++++++.|++|+++.+ ..||
T Consensus 83 ypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv 162 (324)
T d2b25a1 83 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 162 (324)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred ccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence 33455667778999999999999999999999999999999999999999999999999999764 2579
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 019692 191 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 270 (337)
Q Consensus 191 ~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~ 270 (337)
.+.++|+.+...... ...||.|++|.| .|+ ..|.++.+.|++
T Consensus 163 ~~~~~di~~~~~~~~-~~~fD~V~LD~p---------~P~----------------------------~~l~~~~~~LKp 204 (324)
T d2b25a1 163 DFIHKDISGATEDIK-SLTFDAVALDML---------NPH----------------------------VTLPVFYPHLKH 204 (324)
T ss_dssp EEEESCTTCCC--------EEEEEECSS---------STT----------------------------TTHHHHGGGEEE
T ss_pred eEEecchhhcccccC-CCCcceEeecCc---------CHH----------------------------HHHHHHHHhccC
Confidence 999999887654332 257999999988 221 348889888887
Q ss_pred -cE-EEEEcCC
Q 019692 271 -ER-VVYSTCS 279 (337)
Q Consensus 271 -G~-lvYsTCS 279 (337)
|. ++|+.|.
T Consensus 205 GG~lv~~~P~i 215 (324)
T d2b25a1 205 GGVCAVYVVNI 215 (324)
T ss_dssp EEEEEEEESSH
T ss_pred CCEEEEEeCCH
Confidence 64 5587776
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=8.5e-15 Score=137.05 Aligned_cols=92 Identities=26% Similarity=0.304 Sum_probs=78.3
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAY 207 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~ 207 (337)
+..++++.++++|||++||.|.+|+.||+. ..+|+|+|.++..++.|++|++.+|+.|++++.+|........ ...
T Consensus 204 v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~ 280 (358)
T d1uwva2 204 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 280 (358)
T ss_dssp HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhh
Confidence 345567888999999999999999999875 3799999999999999999999999999999999987754332 112
Q ss_pred CCccEEEECCCCCCcc
Q 019692 208 SEVRAILLDPSCSGSG 223 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G 223 (337)
..+|+|++|||.+|.+
T Consensus 281 ~~~d~vilDPPR~G~~ 296 (358)
T d1uwva2 281 NGFDKVLLDPARAGAA 296 (358)
T ss_dssp TCCSEEEECCCTTCCH
T ss_pred ccCceEEeCCCCccHH
Confidence 5689999999998863
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.57 E-value=4.4e-15 Score=126.53 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=97.9
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~ 205 (337)
.++...+.+++|++|||+|||+|..+..+|.. .++|+|+|+++.+++.+++|++++|+ +||+++++|+.+.....
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~- 98 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI- 98 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc-
Confidence 45555689999999999999999999988764 46999999999999999999999999 48999999988775443
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCccc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVE 284 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~E 284 (337)
..||.|+++.+- .+ ..++++.+.+++++ |++|++.. ..|
T Consensus 99 --~~~D~v~~~~~~-------~~----------------------------~~~~~~~~~~~LkpgG~lvi~~~---~~e 138 (186)
T d1l3ia_ 99 --PDIDIAVVGGSG-------GE----------------------------LQEILRIIKDKLKPGGRIIVTAI---LLE 138 (186)
T ss_dssp --CCEEEEEESCCT-------TC----------------------------HHHHHHHHHHTEEEEEEEEEEEC---BHH
T ss_pred --CCcCEEEEeCcc-------cc----------------------------chHHHHHHHHHhCcCCEEEEEee---ccc
Confidence 579999987641 00 13578888888887 78876543 346
Q ss_pred CHHHHHHHhc
Q 019692 285 NEDVIKSVLP 294 (337)
Q Consensus 285 Ne~vv~~~l~ 294 (337)
+...+...+.
T Consensus 139 ~~~~~~~~l~ 148 (186)
T d1l3ia_ 139 TKFEAMECLR 148 (186)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666664
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=8.6e-15 Score=125.43 Aligned_cols=147 Identities=19% Similarity=0.241 Sum_probs=111.9
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA 206 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~--~~~ 206 (337)
+..++.+++|+.|||+|||+|++|.++++.. +.++|+|+|.++.+++.++++++.++ .++.++++++.++... ...
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcC
Confidence 4567889999999999999999999999987 46899999999999999999999886 4699999998775421 111
Q ss_pred CCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccC
Q 019692 207 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVEN 285 (337)
Q Consensus 207 ~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~EN 285 (337)
..+||.|+.|-+||+.= -+...+--..+.+.|..+..++++ |.++.. |++..|+
T Consensus 93 ~~~vdgIl~DlGvSs~Q-----------------------ld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii--~f~s~Ed 147 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQ-----------------------LKGENRELENLKEFLKKAEDLLNPGGRIVVI--SFHSLED 147 (192)
T ss_dssp CSCEEEEEEECSCCHHH-----------------------HHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE--ESSHHHH
T ss_pred CCCcceeeeccchhHhh-----------------------hhhhhccchhHHHHHHHHHHhcCCCCeeeee--ccccHHH
Confidence 36899999999998521 111122344567889999998887 888764 4666665
Q ss_pred HHHHHHHhchhcCCCcEEec
Q 019692 286 EDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 286 e~vv~~~l~~~~~~~~~~~~ 305 (337)
..|++++. ....+++..
T Consensus 148 -r~vk~~f~--~~~~~~~i~ 164 (192)
T d1m6ya2 148 -RIVKETFR--NSKKLRILT 164 (192)
T ss_dssp -HHHHHHHH--HCSSEEESC
T ss_pred -HHHHHHHh--hccccccCC
Confidence 67888885 344566543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=2.9e-14 Score=125.29 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=93.5
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 204 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 204 (337)
+-.+++..++++||++|||+|||+|..+..+++.. ++|+|+|+|+.+++.|++++...|+.++.++++|+.+++..+
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 34577888999999999999999999999998863 689999999999999999999999999999999999887543
Q ss_pred CCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 205 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 205 ~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++||+|++ ++ ++..-+| ...+|+++.+++++ |.+++++
T Consensus 81 ---~~fD~v~~----~~--~l~~~~d--------------------------~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 81 ---DSFDIITC----RY--AAHHFSD--------------------------VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ---TCEEEEEE----ES--CGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cccceeee----ec--eeecccC--------------------------HHHHHHHHHHeeCCCcEEEEEE
Confidence 68999996 22 2221111 14778888888887 6777653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=8.4e-14 Score=119.17 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=78.6
Q ss_pred chhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCC
Q 019692 123 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNL 200 (337)
Q Consensus 123 d~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~ 200 (337)
|.++.+++..+.+.++++|||+|||+|..+..++.. ..+|+++|+|+.+++.+++|++.+++.+ ++++.+|..+.
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 677888888999999999999999999999988875 3589999999999999999999999865 89999998764
Q ss_pred CCCCCCCCCccEEEECCCC
Q 019692 201 DPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPC 219 (337)
.. .++||+|++|||.
T Consensus 115 ~~----~~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 115 VK----DRKYNKIITNPPI 129 (194)
T ss_dssp CT----TSCEEEEEECCCS
T ss_pred hc----cCCceEEEEcccE
Confidence 32 2579999999995
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=3.2e-14 Score=127.57 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=72.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
+++|++|||+|||+|++++++|.. +.++|+|+|+|+.+++.+++|++.+|+.+ |+++++|+.++... ..||.|
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~----~~~D~I 178 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRI 178 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC----CCCCEE
Confidence 478999999999999999999986 35699999999999999999999999976 99999999887643 579999
Q ss_pred EECCCCCC
Q 019692 214 LLDPSCSG 221 (337)
Q Consensus 214 lvDpPCSg 221 (337)
++|+|+++
T Consensus 179 i~~~p~~~ 186 (260)
T d2frna1 179 LMGYVVRT 186 (260)
T ss_dssp EECCCSSG
T ss_pred EECCCCch
Confidence 99999654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=2.3e-13 Score=118.30 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=79.8
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
...+...+++++|++|||+|||+|+.|..+|+.+++.++|+++|+++.+++.++++++..++.|+.++++|+.+..+..
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~- 142 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF- 142 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG-
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc-
Confidence 3445677899999999999999999999999999888999999999999999999999999999999999988765443
Q ss_pred CCCCccEEEECCC
Q 019692 206 AYSEVRAILLDPS 218 (337)
Q Consensus 206 ~~~~fD~IlvDpP 218 (337)
++||+|+++..
T Consensus 143 --~~fD~I~~~~~ 153 (213)
T d1dl5a1 143 --SPYDVIFVTVG 153 (213)
T ss_dssp --CCEEEEEECSB
T ss_pred --cchhhhhhhcc
Confidence 57999998754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=9.8e-13 Score=116.17 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=92.9
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 200 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~ 200 (337)
++.....++..+.++||++|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++++..|+.+ |+++.+|+.++
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 44555667888999999999999999999999998864 3699999999999999999999999865 99999999987
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
.+. ++||.|++ .+ ++..-+|. ..+++++.+.+++ |.++.+
T Consensus 96 ~~~----~~fD~v~~----~~--~~~~~~d~--------------------------~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 96 VAN----EKCDVAAC----VG--ATWIAGGF--------------------------AGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp CCS----SCEEEEEE----ES--CGGGTSSS--------------------------HHHHHHHTTSEEEEEEEEEE
T ss_pred ccc----CceeEEEE----Ee--hhhccCCH--------------------------HHHHHHHHHHcCcCcEEEEE
Confidence 432 57999984 22 22111111 4688999999987 777775
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.41 E-value=5.5e-13 Score=116.17 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=87.6
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 208 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 208 (337)
+...+.++++++|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..|..++.++++|+.+++..+ +
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~---~ 80 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD---E 80 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT---T
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccc---c
Confidence 455678899999999999999999998876 2689999999999999999999999999999999999987443 6
Q ss_pred CccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 209 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 209 ~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
+||+|++- . ++..-+| ...+|+++.+++++ |.++.++
T Consensus 81 ~fD~v~~~----~--~l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 81 RFHIVTCR----I--AAHHFPN--------------------------PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp CEEEEEEE----S--CGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccc----c--cccccCC--------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 89999852 2 2211111 24678888888887 7777654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=3.3e-13 Score=116.34 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=68.2
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
....--.|.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++|++.++.. +.++.+|+..+. .+|
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~-~~~~~~d~~~~~------~~f 110 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK-FKVFIGDVSEFN------SRV 110 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS-EEEEESCGGGCC------CCC
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC-ceEEECchhhhC------CcC
Confidence 3344446899999999999998876653 4569999999999999999999998874 788999987753 569
Q ss_pred cEEEECCCCCC
Q 019692 211 RAILLDPSCSG 221 (337)
Q Consensus 211 D~IlvDpPCSg 221 (337)
|+|++||||..
T Consensus 111 D~Vi~nPP~~~ 121 (201)
T d1wy7a1 111 DIVIMNPPFGS 121 (201)
T ss_dssp SEEEECCCCSS
T ss_pred cEEEEcCcccc
Confidence 99999999853
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.5e-12 Score=117.09 Aligned_cols=143 Identities=10% Similarity=0.101 Sum_probs=97.8
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++|++||.++++|..+..+. .+||+|++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~----~~fDlIvs 181 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG----QQFAMIVS 181 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT----CCEEEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC----CceeEEEe
Confidence 446789999999999999999885 4679999999999999999999999998899999998764322 57999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHhc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVLP 294 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l~ 294 (337)
+||+-...-+...+.... + ........- ..--..-++++..|.+++++ |.++. -+.. .....|..++.
T Consensus 182 NPPYi~~~~~~~~~~v~~--~--eP~~AL~~g---~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~---~q~~~v~~~l~ 250 (274)
T d2b3ta1 182 NPPYIDEQDPHLQQGDVR--F--EPLTALVAA---DSGMADIVHIIEQSRNALVSGGFLLL-EHGW---QQGEAVRQAFI 250 (274)
T ss_dssp CCCCBCTTCHHHHSSGGG--S--SCSTTTBCH---HHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS---SCHHHHHHHHH
T ss_pred cchhhhhhhhcccccccc--c--chhhhcccc---cccchHHHHHHHHHHHhcCCCCEEEE-EECc---hHHHHHHHHHH
Confidence 999865432211010000 0 000000011 12224456899999998887 55554 3332 33456666664
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.34 E-value=2.3e-12 Score=116.19 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=88.0
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~f 210 (337)
...+.+|.+|||+|||+|+.+..+++.. ..+|+|+|+++.+++.++++++..|+. +|+++++|+.+++..+ ++|
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~---~sf 136 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED---NSY 136 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT---TCE
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc---ccc
Confidence 3467899999999999999999999875 368999999999999999999999986 6999999999987443 689
Q ss_pred cEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 211 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 211 D~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|+|++- +++..-+| ...+|..+.++|++ |.+++++...
T Consensus 137 D~V~~~------~~l~h~~d--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 137 DFIWSQ------DAFLHSPD--------------------------KLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp EEEEEE------SCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred chhhcc------chhhhccC--------------------------HHHHHHHHHHhcCCCcEEEEEEeec
Confidence 999852 22211111 13578888888887 7777765443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.33 E-value=3.4e-12 Score=109.26 Aligned_cols=116 Identities=15% Similarity=0.273 Sum_probs=82.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
+..++--.|.+|||+|||+|..++.++.. +..+|+++|+|+.+++.+++|+ .++.++++|+.+++ ++
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~------~~ 107 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS------GK 107 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC------CC
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC------Cc
Confidence 44444446999999999999888765553 4568999999999999999885 46789999998764 57
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 289 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv 289 (337)
||.|++|||. |...++.| ...|+.|+.. +.+||+- +.....+.+
T Consensus 108 fD~Vi~NPPf---g~~~~~~D---------------------------~~fl~~a~~~---~~~iy~i---h~~~~~~~i 151 (197)
T d1ne2a_ 108 YDTWIMNPPF---GSVVKHSD---------------------------RAFIDKAFET---SMWIYSI---GNAKARDFL 151 (197)
T ss_dssp EEEEEECCCC----------C---------------------------HHHHHHHHHH---EEEEEEE---EEGGGHHHH
T ss_pred ceEEEeCccc---chhhhhch---------------------------HHHHHHHHhc---CCeEEEe---hhhhHHHHH
Confidence 9999999995 33322221 2446666542 6789964 556677777
Q ss_pred HHHhc
Q 019692 290 KSVLP 294 (337)
Q Consensus 290 ~~~l~ 294 (337)
.....
T Consensus 152 ~~~~~ 156 (197)
T d1ne2a_ 152 RREFS 156 (197)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.33 E-value=5e-13 Score=109.99 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=67.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.|.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.+|+.+ ++++++|+..+.... ..+||+|++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--~~~fDiIf~ 89 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--TGRFDLVFL 89 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--CSCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--ccccceeEe
Confidence 5899999999999988876653 55799999999999999999999999866 999999987754332 257999999
Q ss_pred CCCC
Q 019692 216 DPSC 219 (337)
Q Consensus 216 DpPC 219 (337)
|||.
T Consensus 90 DPPy 93 (152)
T d2esra1 90 DPPY 93 (152)
T ss_dssp CCSS
T ss_pred chhh
Confidence 9994
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=4e-12 Score=111.64 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=66.1
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.++||++|||+|||+|..+.++|... +.+.|+|+|+|+.+++.+++++++. .|+.++.+|.............+|.
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEE
Confidence 347899999999999999999999974 5689999999999999999987654 5788899988876544332334566
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
++.|-.
T Consensus 147 i~~~~~ 152 (230)
T d1g8sa_ 147 IYEDVA 152 (230)
T ss_dssp EEECCC
T ss_pred eecccc
Confidence 665544
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.9e-12 Score=109.86 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..++.+++. +..+|++||.|...++.+++|++.++..++.++..|+..+.... ..+||+|++|
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~--~~~fDlIf~D 118 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK--GTPHNIVFVD 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--CCCEEEEEEC
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--ccccCEEEEc
Confidence 5789999999999988876664 56799999999999999999999999999999999987765433 3679999999
Q ss_pred CCCC
Q 019692 217 PSCS 220 (337)
Q Consensus 217 pPCS 220 (337)
||..
T Consensus 119 PPY~ 122 (183)
T d2fpoa1 119 PPFR 122 (183)
T ss_dssp CSSS
T ss_pred Cccc
Confidence 9964
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.2e-12 Score=109.97 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=80.6
Q ss_pred CeEEEechhhHHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----Cc
Q 019692 117 GCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-----AN 189 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-----~~ 189 (337)
|....|-.-...+..+| +++||++|||+|||+|+.|..||+++++.++|+++|+++++++.+++++++.++ .+
T Consensus 54 ~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~ 133 (224)
T d1i1na_ 54 QATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR 133 (224)
T ss_dssp TEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred hhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence 44444433334455556 679999999999999999999999998889999999999999999999998764 56
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 190 IEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 190 v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+.+..+|+....+.. ..||+|+++..
T Consensus 134 ~~~~~gD~~~~~~~~---~~fD~I~~~~~ 159 (224)
T d1i1na_ 134 VQLVVGDGRMGYAEE---APYDAIHVGAA 159 (224)
T ss_dssp EEEEESCGGGCCGGG---CCEEEEEECSB
T ss_pred eEEEEeecccccchh---hhhhhhhhhcc
Confidence 899999988765543 57999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.30 E-value=5.1e-12 Score=109.73 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=83.7
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 195 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~ 195 (337)
.|....+-.-...+...|++++|++|||+|||+|+.|..+|.+++ ++|+++|.++..++.+++++++.|+.|+.++++
T Consensus 57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g 134 (215)
T d1jg1a_ 57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 134 (215)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC
Confidence 355555555556667889999999999999999999999999873 679999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEECCC
Q 019692 196 DFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 196 D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
|.....+. ..+||+|++.+.
T Consensus 135 d~~~g~~~---~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 135 DGSKGFPP---KAPYDVIIVTAG 154 (215)
T ss_dssp CGGGCCGG---GCCEEEEEECSB
T ss_pred ccccCCcc---cCcceeEEeecc
Confidence 98876544 367999998654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=4.3e-12 Score=113.02 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=91.8
Q ss_pred hhHHHHHHhC--CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019692 125 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 202 (337)
Q Consensus 125 ss~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~ 202 (337)
...++..++. .++|++|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++|++++|++ ++++++|..+..+
T Consensus 106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~~ 181 (254)
T d2nxca1 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP 181 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG
T ss_pred hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccccc
Confidence 4455555554 578999999999999998877664 368999999999999999999999986 5788888765432
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIH 281 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~ 281 (337)
.++||.|+++.. ... ..+++....+.+++ |+++.|- .
T Consensus 182 ----~~~fD~V~ani~----------------------------~~~-------l~~l~~~~~~~LkpGG~lilSg---i 219 (254)
T d2nxca1 182 ----FGPFDLLVANLY----------------------------AEL-------HAALAPRYREALVPGGRALLTG---I 219 (254)
T ss_dssp ----GCCEEEEEEECC----------------------------HHH-------HHHHHHHHHHHEEEEEEEEEEE---E
T ss_pred ----ccccchhhhccc----------------------------ccc-------HHHHHHHHHHhcCCCcEEEEEe---c
Confidence 257999997521 111 13445555566676 7777642 2
Q ss_pred cccCHHHHHHHhchhcCCCcEEec
Q 019692 282 QVENEDVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 282 ~~ENe~vv~~~l~~~~~~~~~~~~ 305 (337)
..+..+.|...++ ..||++..
T Consensus 220 l~~~~~~v~~~~~---~~Gf~~~~ 240 (254)
T d2nxca1 220 LKDRAPLVREAMA---GAGFRPLE 240 (254)
T ss_dssp EGGGHHHHHHHHH---HTTCEEEE
T ss_pred chhhHHHHHHHHH---HCCCEEEE
Confidence 2344555555553 34777653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.25 E-value=2.1e-11 Score=104.00 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=83.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..|++++.+...|+....+. ++||.|++.
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~I~~~ 102 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD----GEYDFILST 102 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC----CCEEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc----ccccEEEEe
Confidence 3459999999999999999985 368999999999999999999999999999999999887653 579999975
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.. +..-|+ . ....+|+.+.+++++ |.++.++..
T Consensus 103 ~~------~~~~~~-----------------~-------~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 103 VV------MMFLEA-----------------Q-------TIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp SC------GGGSCT-----------------T-------HHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ee------eecCCH-----------------H-------HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 43 111000 0 024688888888887 777776554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.21 E-value=1.2e-11 Score=108.96 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++.+|||+|||+|..+..+++. ..+|+|+|.|+.|++.|+++++..|. +++++++|+.++... ++||+|++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~----~~fD~i~~- 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN----RKFDLITC- 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS----CCEEEEEE-
T ss_pred CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccc----ccccccce-
Confidence 4679999999999999999886 35899999999999999999998886 599999999987642 57999995
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.++..+.+. ++++ ...+|+++.+.|++ |.+++..
T Consensus 108 -~~~~~~~~~-------------------~~~~-------~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 108 -CLDSTNYII-------------------DSDD-------LKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp -CTTGGGGCC-------------------SHHH-------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred -eeeeeeccC-------------------CHHH-------HHHHHHHHHHhCCCCeEEEEEe
Confidence 122222221 1222 35688999999987 7777643
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.20 E-value=2.8e-11 Score=105.19 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=83.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~-~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
.+++.+|||+|||+|..+..+++.+. +..+|+|+|+|+.|++.|+++++..+.. ++.+..+|+.+++ +.++|.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~ 111 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNASM 111 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----CCSEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-----ccccee
Confidence 36789999999999999999998753 4569999999999999999999887754 4888999987765 246888
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
|++ ++....+ ...| ..++|+++.+.|++ |.++.++-+.
T Consensus 112 i~~---~~~l~~~-~~~d--------------------------~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 112 VIL---NFTLQFL-PPED--------------------------RIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp EEE---ESCGGGS-CGGG--------------------------HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eEE---eeecccc-Chhh--------------------------HHHHHHHHHHhCCCCceeecccccc
Confidence 875 2222111 0000 24789999998887 7787765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=2.8e-11 Score=106.40 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=84.1
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..+++. ...|+|+|+|+.|++.++++++..+. +++++++|+++++.. ++||.|
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~----~~fD~I 109 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK----NEFDAV 109 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC----SCEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhcccc----cccchH
Confidence 4566789999999999999999885 36899999999999999999998876 599999999998743 479999
Q ss_pred EECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCC
Q 019692 214 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSI 280 (337)
Q Consensus 214 lvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~ 280 (337)
++ ++.... .. +. .-..+.|+++.+.|++ |.++.+...+
T Consensus 110 ~~----~~~~~~--~~----------------~~-------~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 110 TM----FFSTIM--YF----------------DE-------EDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp EE----CSSGGG--GS----------------CH-------HHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred hh----hhhhhh--cC----------------Ch-------HHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 95 322111 10 11 1125678899888887 8888766553
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=5.7e-12 Score=105.60 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...|.+|||+|||+|..++.++.. ..+|+++|.|+.+++.+++|++.+|+.+ +....+|....... ....+||+|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK-AQGERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH-HTTCCEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccc-ccCCcccee
Confidence 457899999999999998876664 3689999999999999999999999864 44434432111100 112579999
Q ss_pred EECCCCC
Q 019692 214 LLDPSCS 220 (337)
Q Consensus 214 lvDpPCS 220 (337)
++|||+.
T Consensus 115 f~DPPY~ 121 (171)
T d1ws6a1 115 FMAPPYA 121 (171)
T ss_dssp EECCCTT
T ss_pred EEccccc
Confidence 9999963
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=3.1e-11 Score=103.99 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
++++++|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++++...+. ++..+.+|+.+++..+ ++||+|+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~---~~fD~I~ 107 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFED---KTFDYVI 107 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCT---TCEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-cccccccccccccccC---cCceEEE
Confidence 367889999999999999999875 46899999999999999999988875 4778889999887543 6799999
Q ss_pred ECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEE
Q 019692 215 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYS 276 (337)
Q Consensus 215 vDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYs 276 (337)
+ +. ++.. .+..+ ..++|+.+.+++++ |.++.+
T Consensus 108 ~----~~--~l~~-----------------~~~~d-------~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 108 F----ID--SIVH-----------------FEPLE-------LNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp E----ES--CGGG-----------------CCHHH-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred E----ec--chhh-----------------CChhH-------HHHHHHHHHHHcCcCcEEEEE
Confidence 6 22 2211 01111 24678888888887 776654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.17 E-value=5.8e-11 Score=103.53 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=76.0
Q ss_pred CeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019692 117 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 196 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D 196 (337)
|....+-.-...+...|++++|++|||+|||+|+.|..||.+. ++|+++|+++..++.+++++.. ..|+.++++|
T Consensus 50 g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d 124 (224)
T d1vbfa_ 50 GINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGD 124 (224)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESC
T ss_pred CCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCc
Confidence 4444444444455678999999999999999999999999984 7899999999999999998764 4689999999
Q ss_pred CCCCCCCCCCCCCccEEEECCC
Q 019692 197 FLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 197 ~~~~~~~~~~~~~fD~IlvDpP 218 (337)
.....+. ..+||+|++++.
T Consensus 125 ~~~g~~~---~~pfD~Iiv~~a 143 (224)
T d1vbfa_ 125 GTLGYEE---EKPYDRVVVWAT 143 (224)
T ss_dssp GGGCCGG---GCCEEEEEESSB
T ss_pred hhhcchh---hhhHHHHHhhcc
Confidence 8765443 267999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=3.4e-11 Score=105.06 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=78.5
Q ss_pred CeEEEechhhHHHHHHh--CCCCCCeEEeecCCchhHHHHHHHHcCCC-----CEEEEEeCCHHHHHHHHHHHHHh----
Q 019692 117 GCVFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLS---- 185 (337)
Q Consensus 117 G~~~~Qd~ss~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----g~V~avD~~~~~l~~l~~~~~~~---- 185 (337)
|....|-.-...+.++| ++++|++|||+|||+|+.|..++.+++.. .+|+++|++++.++.+++|+...
T Consensus 58 ~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~ 137 (223)
T d1r18a_ 58 GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 137 (223)
T ss_dssp TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence 44444433334455555 78999999999999999999999987543 48999999999999999987654
Q ss_pred -CCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 186 -GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 186 -g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
++.||.++++|.....+. ...||+|+++..+
T Consensus 138 ~~~~nv~~~~~d~~~~~~~---~~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 138 LDSGQLLIVEGDGRKGYPP---NAPYNAIHVGAAA 169 (223)
T ss_dssp HHHTSEEEEESCGGGCCGG---GCSEEEEEECSCB
T ss_pred cCccEEEEEeccccccccc---ccceeeEEEEeec
Confidence 567899999998876543 2579999997763
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.16 E-value=9.7e-12 Score=105.24 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAI 213 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~I 213 (337)
..|.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.++.. +++++++|+..+.... ....+||+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 46899999999999999877774 5679999999999999999999999986 5999999987643210 112479999
Q ss_pred EECCCC
Q 019692 214 LLDPSC 219 (337)
Q Consensus 214 lvDpPC 219 (337)
++|||.
T Consensus 118 flDPPY 123 (182)
T d2fhpa1 118 LLDPPY 123 (182)
T ss_dssp EECCCG
T ss_pred Eechhh
Confidence 999994
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.16 E-value=4e-11 Score=101.39 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCCCCCCCCccEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~--v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
.|.+|||+|||+|..++..++ ++...|+.||.+...++.+++|++.+++.+ ..+...|+...........+||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalS--RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALS--RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHH--TTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeee--ecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 578999999999988887766 467799999999999999999999998754 7777777655433222235799999
Q ss_pred ECCCCC
Q 019692 215 LDPSCS 220 (337)
Q Consensus 215 vDpPCS 220 (337)
+|||..
T Consensus 121 lDPPY~ 126 (183)
T d2ifta1 121 LDPPFH 126 (183)
T ss_dssp ECCCSS
T ss_pred echhHh
Confidence 999964
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.12 E-value=1e-10 Score=100.60 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=89.8
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
+-.|||+|||+|..+..+|+.. +...++|+|+++.++..+.+++++.|++||.++.+|+..+....+ ..++|.|++.=
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~-~~~~~~i~i~f 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-DGEIDRLYLNF 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-TTCCSEEEEES
T ss_pred CCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc-CCceehhcccc
Confidence 4589999999999999999985 568999999999999999999999999999999999988753332 35789998765
Q ss_pred CCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHHHh
Q 019692 218 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 218 PCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
|. |. +..... ..+ -.|...|....+.+++ |.|..+| -+++...+.+
T Consensus 110 Pd---------Pw---~K~~h~-krR-----------l~~~~~l~~~~~~LkpgG~l~i~T------D~~~Y~~~~l 156 (204)
T d1yzha1 110 SD---------PW---PKKRHE-KRR-----------LTYKTFLDTFKRILPENGEIHFKT------DNRGLFEYSL 156 (204)
T ss_dssp CC---------CC---CSGGGG-GGS-----------TTSHHHHHHHHHHSCTTCEEEEEE------SCHHHHHHHH
T ss_pred cc---------cc---cchhhh-hhh-----------hhHHHHHHHHHHhCCCCcEEEEEE------CCccHHHHHH
Confidence 52 11 110000 000 1346778887777776 7776655 2455555554
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.12 E-value=3.2e-11 Score=103.85 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=84.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
++-.|||+|||+|..+.++|+. .+...++|+|+++.++..+.+++++.|++||.++++|+..+....+ .+.+|.|++.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~-~~~~d~v~i~ 106 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-PGEVKRVYLN 106 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-TTSCCEEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-chhhhccccc
Confidence 3458999999999999999998 4678999999999999999999999999999999999987642221 2578888876
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
=|..-. +.... +. + -+|..+|+.+.+.|++ |.|...|
T Consensus 107 fp~P~~----k~~h~---------------k~---R--l~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWP----KKRHE---------------KR---R--LTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCC----SGGGG---------------GG---S--TTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccc----hhhhc---------------ch---h--hhHHHHHHHHHHhCCCCcEEEEEE
Confidence 553211 00000 00 0 0245678888787776 7776665
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.11 E-value=1.4e-10 Score=104.48 Aligned_cols=113 Identities=11% Similarity=0.121 Sum_probs=86.9
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 207 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 207 (337)
++-....+.++.+|||+|||+|..+..++...+.+++|+|+|+++.+++.++++++..+. +++++++|+.+++..
T Consensus 18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~---- 92 (281)
T d2gh1a1 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN---- 92 (281)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS----
T ss_pred HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc----
Confidence 333444667788999999999999999999876668999999999999999999998876 699999999887643
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
++||+|++.. ++..-+| ...+|+++.+.+++ |.++-.+
T Consensus 93 ~~fD~v~~~~------~l~~~~d--------------------------~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 93 DKYDIAICHA------FLLHMTT--------------------------PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp SCEEEEEEES------CGGGCSS--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEEeh------hhhcCCC--------------------------HHHHHHHHHHHcCcCcEEEEEE
Confidence 4699999642 2211111 14678999998887 6666443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=2.3e-10 Score=103.04 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=69.4
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
-..++..++++||++|||+|||.|+.+.++++.. ..+|+++|+|++.++.+++++++.|+.. +.+...|...++
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--- 115 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 115 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence 3455666789999999999999999999998875 3699999999999999999999999854 888888877653
Q ss_pred CCCCCccEEEE
Q 019692 205 PAYSEVRAILL 215 (337)
Q Consensus 205 ~~~~~fD~Ilv 215 (337)
++||.|++
T Consensus 116 ---~~fD~i~s 123 (280)
T d2fk8a1 116 ---EPVDRIVS 123 (280)
T ss_dssp ---CCCSEEEE
T ss_pred ---cchhhhhH
Confidence 57999984
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=5.2e-11 Score=103.30 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
...++.+|||+|||+|..+..++... ..+|+++|+|+.+++.++++++..+..+++++++|+++++... ++||+|
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~---~~fD~I 131 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP---DSYDVI 131 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS---SCEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccccc---cccccc
Confidence 45667899999999999998875432 3589999999999999999999888888999999999987543 689999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 132 ~~ 133 (222)
T d2ex4a1 132 WI 133 (222)
T ss_dssp EE
T ss_pred cc
Confidence 95
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.5e-10 Score=99.47 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-----------------CCcEE
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------------AANIE 191 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-----------------~~~v~ 191 (337)
...++.+.+|.+|||+|||.|..+..||+. +..|+|+|+|+.+++.++++....+ -.+++
T Consensus 37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 345567888999999999999999999985 4699999999999999988765321 13589
Q ss_pred EEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-
Q 019692 192 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV- 270 (337)
Q Consensus 192 ~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~- 270 (337)
++++|+.++++... ..||+|+. |.....+ .|+ . ....++...+++++
T Consensus 114 ~~~~d~~~l~~~~~--~~fd~i~~---~~~l~~~--~~~------------------~-------r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 114 LYCCSIFDLPRTNI--GKFDMIWD---RGALVAI--NPG------------------D-------RKCYADTMFSLLGKK 161 (229)
T ss_dssp EEESCGGGGGGSCC--CCEEEEEE---SSSTTTS--CGG------------------G-------HHHHHHHHHHTEEEE
T ss_pred EEEcchhhcccccc--CceeEEEE---EEEEEec--cch------------------h-------hHHHHHHHHhhcCCc
Confidence 99999988875542 67999984 2222211 111 0 14567777778887
Q ss_pred cEEEEEcCCCCccc--------CHHHHHHHh
Q 019692 271 ERVVYSTCSIHQVE--------NEDVIKSVL 293 (337)
Q Consensus 271 G~lvYsTCS~~~~E--------Ne~vv~~~l 293 (337)
|.+++.+++..+.+ .++.+..++
T Consensus 162 G~~~l~~~~~~~~~~~gpp~~~~~~el~~lf 192 (229)
T d2bzga1 162 FQYLLCVLSYDPTKHPGPPFYVPHAEIERLF 192 (229)
T ss_dssp EEEEEEEEECCTTTCCCSSCCCCHHHHHHHH
T ss_pred ceEEEEEcccCCCCCCCCCCCCCHHHHHHHh
Confidence 78888888765433 456677776
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=5.3e-10 Score=101.13 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=94.5
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL 200 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~ 200 (337)
|..--.+++..+++++|++|||+|||.|+.+.++|+.. ..+|+++++|++.++.++++++..|+.+ +.+...|....
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 33334566777899999999999999999999999875 3699999999999999999999999865 88888886532
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ ++||.|+. .|++-.-++..-. ...+....+++.+.++|+| |+++-.|.+
T Consensus 124 ~------~~fD~i~s------ie~~eH~~~~~~~-----------------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 124 D------EPVDRIVS------LGAFEHFADGAGD-----------------AGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp C------CCCSEEEE------ESCGGGTTCCSSC-----------------CSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred c------cccceEee------chhHHhcchhhhh-----------------hHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 2 57999984 3344221110000 0011235788899999887 888877766
Q ss_pred CCc
Q 019692 280 IHQ 282 (337)
Q Consensus 280 ~~~ 282 (337)
+..
T Consensus 175 ~~~ 177 (291)
T d1kpia_ 175 IPD 177 (291)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=3.8e-10 Score=101.79 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=91.3
Q ss_pred echhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCC
Q 019692 122 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNL 200 (337)
Q Consensus 122 Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~ 200 (337)
|+.-..+++..++++||++|||+|||.|+.+.++|+.. +.+|+++.+|+..++.+++++++.|.. +|++..+|...+
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF 124 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence 44444666777899999999999999999999999986 379999999999999999999988874 599999998776
Q ss_pred CCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 201 DPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 201 ~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ ++||.|+. .|++-. ... +.....++.+.++|++ |+++-.|.+
T Consensus 125 ~------~~fD~i~s------i~~~eh---------~~~---------------~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 125 D------EPVDRIVS------IGAFEH---------FGH---------------ERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp C------CCCSEEEE------ESCGGG---------TCT---------------TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred c------ccccceee------ehhhhh---------cCc---------------hhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 4 46898874 344321 000 0024678888888887 776654443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.07 E-value=2e-10 Score=101.59 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
.++|.+|||+|||+|+.+..++.. +.+.|+|+|+|+.+++.|+++.+..+.. ++.+.++|+....... .++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~--~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc--cccceEE
Confidence 467899999999999998888875 3468999999999999999999887764 6999999987655432 2579999
Q ss_pred EE
Q 019692 214 LL 215 (337)
Q Consensus 214 lv 215 (337)
++
T Consensus 98 ~~ 99 (252)
T d1ri5a_ 98 SS 99 (252)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.06 E-value=4.6e-11 Score=100.51 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=63.4
Q ss_pred HhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeccCCC
Q 019692 132 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA------------ANIEVLHGDFLN 199 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~------------~~v~~~~~D~~~ 199 (337)
.|.+.||.+|||+|||+|..+..||+. +..|+|+|+|+.+++.++++++..+. .++.++.+|+.+
T Consensus 15 ~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 15 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 367889999999999999999999986 47999999999999999999865432 234677778777
Q ss_pred CCCCCCCCCCccEEEE
Q 019692 200 LDPKDPAYSEVRAILL 215 (337)
Q Consensus 200 ~~~~~~~~~~fD~Ilv 215 (337)
+.+.. ...||.|+.
T Consensus 92 l~~~~--~~~~D~i~~ 105 (201)
T d1pjza_ 92 LTARD--IGHCAAFYD 105 (201)
T ss_dssp STHHH--HHSEEEEEE
T ss_pred ccccc--ccceeEEEE
Confidence 65433 246899974
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.2e-10 Score=101.72 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=82.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.+|++|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++++..+ .++.++..|+.......+ .++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~fD~i~f 127 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP-DGHFDGILY 127 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC-TTCEEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc-cccccccccccccccccc-cccccceee
Confidence 579999999999999999988752 3589999999999999999988765 347778887665433322 368999999
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
|+.-+...... ...+...++.+.++|++ |.++|.+
T Consensus 128 D~~~~~~~~~~---------------------------~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 128 DTYPLSEETWH---------------------------THQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCCCBGGGTT---------------------------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccc---------------------------ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 99865443221 01134677888888887 7887743
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.05 E-value=3.9e-10 Score=97.08 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=101.8
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
+.+++.++.+++|++|||.|||+|++...+.+.......++++|+++..+.. .....++++|.......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~~~-- 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWEPG-- 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCCCS--
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccccc--
Confidence 5677788889999999999999999998888877777889999999876432 22357788887765533
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHH-------HHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLN-------KLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.+||.|+.|||..........+.. .......... ....++...+.+|++++++ |.+++.+
T Consensus 77 --~~fd~ii~npP~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 77 --EAFDLILGNPPYGIVGEASKYPIH----------VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp --SCEEEEEECCCCCCBSCTTTCSBC----------CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --cccceecccCccccccccccccch----------hhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 579999999998765443221110 0000000000 1123567789999998876 8877765
Q ss_pred -CCCCcccCHHHHHHHhc
Q 019692 278 -CSIHQVENEDVIKSVLP 294 (337)
Q Consensus 278 -CS~~~~ENe~vv~~~l~ 294 (337)
+|+...++...++++|-
T Consensus 145 p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 145 PATWLVLEDFALLREFLA 162 (223)
T ss_dssp EGGGGTCGGGHHHHHHHH
T ss_pred eeeeccCcchHHHHHHHH
Confidence 77877777778877773
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.04 E-value=5e-10 Score=102.77 Aligned_cols=145 Identities=9% Similarity=0.046 Sum_probs=100.5
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKG----KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~----~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 205 (337)
..++..+++.+|||.|||+|++...+...+.. ...++|+|+++.+++.++.++...+.. +.+.++|......
T Consensus 110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~--- 185 (328)
T d2f8la1 110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANLL--- 185 (328)
T ss_dssp HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCCC---
T ss_pred HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhccccccccc---
Confidence 34456788999999999999999888776532 237999999999999999999888765 5566777654432
Q ss_pred CCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEE-EcCCCCcc
Q 019692 206 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVY-STCSIHQV 283 (337)
Q Consensus 206 ~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvY-sTCS~~~~ 283 (337)
..+||+|+.+||++......+...... ... . .....+...+.++++++++ |++++ ..+|+...
T Consensus 186 -~~~fD~vi~NPPy~~~~~~~~~~~~~~--~~~---~---------~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~ 250 (328)
T d2f8la1 186 -VDPVDVVISDLPVGYYPDDENAKTFEL--CRE---E---------GHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT 250 (328)
T ss_dssp -CCCEEEEEEECCCSEESCHHHHTTSTT--CCS---S---------SCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred -cccccccccCCCCCCCccchhhhhcch--hcc---c---------CcchHHHHHHHHHHHhcCCCCceEEEecCccccC
Confidence 257999999999865332111111000 000 0 0112345689999998886 76544 56788877
Q ss_pred cCHHHHHHHh
Q 019692 284 ENEDVIKSVL 293 (337)
Q Consensus 284 ENe~vv~~~l 293 (337)
.+...+.+.|
T Consensus 251 ~~~~~lR~~L 260 (328)
T d2f8la1 251 SDFAKVDKFI 260 (328)
T ss_dssp TTHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 8888787776
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=3.3e-10 Score=95.51 Aligned_cols=140 Identities=24% Similarity=0.287 Sum_probs=101.1
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAY 207 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~~ 207 (337)
..+|.+++|+.++|+++|.||.|..+.+. .++|+|+|.++.+++.+++. -.+++.+++.++.++.... ...
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcCC
Confidence 45678999999999999999999888774 58999999999999887653 2467999999988765221 123
Q ss_pred CCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCH
Q 019692 208 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENE 286 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe 286 (337)
+++|.|+.|-.+|....= .++ ..+ ..+...|..++.++++ |.+++.|. +..| +
T Consensus 84 ~~vdgIl~DLGvSs~qld--~~~--------------------re~-~~~~~~L~~~~~~lk~gg~~~ii~f--hs~E-d 137 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLD--DPS--------------------DEL-NALKEFLEQAAEVLAPGGRLVVIAF--HSLE-D 137 (182)
T ss_dssp SCEEEEEEECSCCHHHHH--CGG--------------------THH-HHHHHHHHHHHHHEEEEEEEEEEEC--SHHH-H
T ss_pred CccCEEEEEccCCHHHhh--cch--------------------HHH-HHHHHHHHHHHhhhCCCCeEEEEec--ccch-h
Confidence 679999999988876431 110 123 3345689999998886 78887764 4555 4
Q ss_pred HHHHHHhchhcCCCcEEec
Q 019692 287 DVIKSVLPIAMSFGFQLAT 305 (337)
Q Consensus 287 ~vv~~~l~~~~~~~~~~~~ 305 (337)
..|..+++. .+++...
T Consensus 138 ~ivk~~~~e---~~~k~i~ 153 (182)
T d1wg8a2 138 RVVKRFLRE---SGLKVLT 153 (182)
T ss_dssp HHHHHHHHH---HCSEESC
T ss_pred HHHHHHHhh---ccceecc
Confidence 567778753 3466543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=1.3e-09 Score=97.31 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=68.6
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
..+|+|+|||+|..++.++.. +..+|+|+|+|+.+++.+++|++++|+.+ +.+..+|+.+..... .++||+|+.+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~--~~~fDlIVsN 186 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK--FASIEMILSN 186 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG--TTTCCEEEEC
T ss_pred ccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc--cCcccEEEEc
Confidence 458999999999999888864 56899999999999999999999999976 788888887654332 3689999999
Q ss_pred CCCCCc
Q 019692 217 PSCSGS 222 (337)
Q Consensus 217 pPCSg~ 222 (337)
||+=..
T Consensus 187 PPYI~~ 192 (271)
T d1nv8a_ 187 PPYVKS 192 (271)
T ss_dssp CCCBCG
T ss_pred ccccCc
Confidence 997654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.2e-09 Score=94.86 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=67.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC---CCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK---DPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~---~~~~~~fD~ 212 (337)
+.-++||+|||+|..++.++.... ..+++|+|+++.+++.|++|++++++.+ +.+++.+....... ....++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 345899999999999999999864 5799999999999999999999999866 88887665433211 111357999
Q ss_pred EEECCCCCCc
Q 019692 213 ILLDPSCSGS 222 (337)
Q Consensus 213 IlvDpPCSg~ 222 (337)
|+++||.-.+
T Consensus 140 ivsNPPY~~~ 149 (250)
T d2h00a1 140 CMCNPPFFAN 149 (250)
T ss_dssp EEECCCCC--
T ss_pred EEecCccccc
Confidence 9999997543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=9.5e-10 Score=95.61 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++ +..+ ++.+|+.+++..+ ++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~~~~---~~fD~ii~ 108 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLPFPS---GAFEAVLA 108 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCCSCT---TCEEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--ccccccccccccc---ccccceee
Confidence 46789999999999999999875 36899999999999998875 3333 5678888876443 68999985
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=2.8e-09 Score=95.03 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 214 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 214 (337)
+.++.+|||+|||+|..+..+++.. +...++|+|+|+.+++.++++ ..++.++++|+.+++..+ ++||+|+
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~~---~sfD~v~ 152 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFSD---TSMDAII 152 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBCT---TCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCCC---CCEEEEe
Confidence 5678899999999999999999885 457999999999999988765 356899999999987654 6799998
Q ss_pred E
Q 019692 215 L 215 (337)
Q Consensus 215 v 215 (337)
+
T Consensus 153 ~ 153 (268)
T d1p91a_ 153 R 153 (268)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.88 E-value=6.1e-10 Score=104.04 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=91.8
Q ss_pred cCeEE--EechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc----
Q 019692 116 NGCVF--LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN---- 189 (337)
Q Consensus 116 ~G~~~--~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~---- 189 (337)
.+.|| .|..+..+.+.++....+.+|||+.||+|..++..|.-.+ ..+|+++|+|+..++.+++|++.+++.+
T Consensus 22 ~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~ 100 (375)
T d2dula1 22 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRES 100 (375)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEEC
T ss_pred CCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccc
Confidence 34455 4655554443333333577999999999999998877654 4699999999999999999999998753
Q ss_pred -----------EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHH
Q 019692 190 -----------IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQK 258 (337)
Q Consensus 190 -----------v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~ 258 (337)
+.+.+.|+..+.... ...||+|.+||. |+. .
T Consensus 101 ~~~~~~~~~~~~~~~~~Da~~~~~~~--~~~fDvIDiDPf--Gs~----------------------------------~ 142 (375)
T d2dula1 101 KGRAILKGEKTIVINHDDANRLMAER--HRYFHFIDLDPF--GSP----------------------------------M 142 (375)
T ss_dssp SSEEEEESSSEEEEEESCHHHHHHHS--TTCEEEEEECCS--SCC----------------------------------H
T ss_pred cccccccccceeEeehhhhhhhhHhh--cCcCCcccCCCC--CCc----------------------------------H
Confidence 556666664443222 256999999994 432 2
Q ss_pred HHHHHHhCCCCCcEEEEEcCC
Q 019692 259 KALRHALSFPGVERVVYSTCS 279 (337)
Q Consensus 259 ~lL~~A~~~~~~G~lvYsTCS 279 (337)
..|+.|++.++.|.+++.|||
T Consensus 143 pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 143 EFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhccCCEEEEEec
Confidence 568899887777889999988
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.1e-09 Score=94.94 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=76.8
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~ 203 (337)
..++...++......+||++|+|+|+.|+.+|..+..+|+|+++|.++...+.+++++++.|+.+ |+++.+|+.+..+.
T Consensus 47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence 34555555555567799999999999999999998878999999999999999999999999866 99999998654321
Q ss_pred ---CCCCCCccEEEECCC
Q 019692 204 ---DPAYSEVRAILLDPS 218 (337)
Q Consensus 204 ---~~~~~~fD~IlvDpP 218 (337)
.....+||.|++|.-
T Consensus 127 ~~~~~~~~~fD~ifiD~d 144 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDAD 144 (219)
T ss_dssp HHHTTCTTCEEEEEECSC
T ss_pred hhhhcccCCccEEEEeCC
Confidence 111357999999975
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1e-09 Score=94.91 Aligned_cols=94 Identities=17% Similarity=0.281 Sum_probs=75.1
Q ss_pred hhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC
Q 019692 125 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK 203 (337)
Q Consensus 125 ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~ 203 (337)
...+...++......+|||+|||+|..|+.||..+..+++|+++|+++.+++.+++++++.|+.+ |+++.+|+.+..+.
T Consensus 44 ~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~ 123 (214)
T d2cl5a1 44 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123 (214)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence 33444444444445699999999999999999988777999999999999999999999999965 99999998765432
Q ss_pred C---CCCCCccEEEECCC
Q 019692 204 D---PAYSEVRAILLDPS 218 (337)
Q Consensus 204 ~---~~~~~fD~IlvDpP 218 (337)
. .....||.|++|.-
T Consensus 124 l~~~~~~~~~D~ifiD~~ 141 (214)
T d2cl5a1 124 LKKKYDVDTLDMVFLDHW 141 (214)
T ss_dssp HHHHSCCCCEEEEEECSC
T ss_pred hhhcccccccceeeeccc
Confidence 1 11357999999943
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.6e-09 Score=97.21 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-------CC--CcEEEEeccC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------GA--ANIEVLHGDF 197 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-------g~--~~v~~~~~D~ 197 (337)
..+...+.++++++|||+|||+|..+.++|... +..+++|+|+++.+++.++++++.. |. .+|+++++|+
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 344566789999999999999999999999875 4568999999999999988876653 33 4699999999
Q ss_pred CCCCCCCCCCCCccEEEEC
Q 019692 198 LNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 198 ~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+..+. ....|+|++.
T Consensus 220 ~~~~~~~~-~~~advi~~~ 237 (328)
T d1nw3a_ 220 LSEEWRER-IANTSVIFVN 237 (328)
T ss_dssp TSHHHHHH-HHHCSEEEEC
T ss_pred cccccccc-cCcceEEEEc
Confidence 87753321 1235788864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=3.6e-09 Score=95.24 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=84.1
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEeccCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA----NIEVLHGDFLNLDP 202 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~----~v~~~~~D~~~~~~ 202 (337)
.++...+..+++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++....+.. ...+...|+...+.
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 122 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence 44556666677889999999999999999885 358999999999999999999887653 24455556544322
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 278 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTC 278 (337)
..+...+||.|++ .+. ++..-++. . . +. .-+..+|+++.+.|++ |.+|..+.
T Consensus 123 ~~~~~~~fd~v~~----~~~-~~~~~~~~-----~----~---~~-------~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 123 DVPAGDGFDAVIC----LGN-SFAHLPDS-----K----G---DQ-------SEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HSCCTTCEEEEEE----CSS-CGGGSCCT-----T----S---SS-------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCCCceEEEE----ecC-chhhcCCc-----c----c---Ch-------HHHHHHHHHHHHHcCcCcEEEEeec
Confidence 2122357999995 221 11111110 0 0 01 1246789999999987 78877553
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.86 E-value=2.9e-09 Score=94.25 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred HHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...+...++.+|||+|||+|..|..++... ...|+++|+++.+++.+++++. +.++++++++|+.+++... ++
T Consensus 86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~---~~ 158 (254)
T d1xtpa_ 86 IASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPP---NT 158 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCS---SC
T ss_pred HhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCC---Cc
Confidence 344555678899999999999999887653 2589999999999999998865 3456899999999887543 67
Q ss_pred ccEEEEC
Q 019692 210 VRAILLD 216 (337)
Q Consensus 210 fD~IlvD 216 (337)
||+|++-
T Consensus 159 fD~I~~~ 165 (254)
T d1xtpa_ 159 YDLIVIQ 165 (254)
T ss_dssp EEEEEEE
T ss_pred cceEEee
Confidence 9999974
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.84 E-value=3.8e-09 Score=91.49 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=58.3
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
....++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++.. .++.++++|+.++... ++||+
T Consensus 16 ~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~----~~fD~ 84 (225)
T d2p7ia1 16 TPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLP----RRYDN 84 (225)
T ss_dssp GGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCS----SCEEE
T ss_pred hhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccc----ccccc
Confidence 33345779999999999999888765 3579999999999999987642 4699999999887642 57999
Q ss_pred EEE
Q 019692 213 ILL 215 (337)
Q Consensus 213 Ilv 215 (337)
|++
T Consensus 85 I~~ 87 (225)
T d2p7ia1 85 IVL 87 (225)
T ss_dssp EEE
T ss_pred ccc
Confidence 995
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.7e-09 Score=96.15 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=64.0
Q ss_pred hCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 133 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
....+|.+|||+|||+|..++.+|+. +..+|+|+|.++.+.. ++++.+++|. .+|.++++|..++.... .+||
T Consensus 31 ~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~---~~~D 104 (311)
T d2fyta1 31 PHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPV---EKVD 104 (311)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSC---SCEE
T ss_pred cccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcc---ccce
Confidence 34567999999999999999988875 3468999999998764 5666666665 56999999999886543 5799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++++.
T Consensus 105 ~Ivse~~ 111 (311)
T d2fyta1 105 VIISEWM 111 (311)
T ss_dssp EEEECCC
T ss_pred EEEEeee
Confidence 9998865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.83 E-value=2.1e-09 Score=93.58 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=75.9
Q ss_pred hHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019692 126 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD 204 (337)
Q Consensus 126 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~ 204 (337)
.++...++......+||++|+++|+.|+.||..++.+|+|+++|.++...+.+++++++.|+.+ |+++.+|+.+..+..
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l 127 (227)
T d1susa1 48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM 127 (227)
T ss_dssp HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence 3455555444556799999999999999999999878999999999999999999999999865 999999987653221
Q ss_pred ----CCCCCccEEEECCC
Q 019692 205 ----PAYSEVRAILLDPS 218 (337)
Q Consensus 205 ----~~~~~fD~IlvDpP 218 (337)
...++||.||+|+-
T Consensus 128 ~~~~~~~~~fD~iFiDa~ 145 (227)
T d1susa1 128 IKDEKNHGSYDFIFVDAD 145 (227)
T ss_dssp HHCGGGTTCBSEEEECSC
T ss_pred HhccccCCceeEEEeccc
Confidence 01257999999975
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=3.1e-09 Score=97.07 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+|.+|||+|||+|..+..+|+. +..+|+|+|.++. +..++++++++|..+ |+++++|+.++.... .+||+|
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~i 104 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVDII 104 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccccc---ceeEEE
Confidence 347999999999999999887774 3468999999975 577888888888854 999999999886442 579999
Q ss_pred EECCCC
Q 019692 214 LLDPSC 219 (337)
Q Consensus 214 lvDpPC 219 (337)
+++...
T Consensus 105 vs~~~~ 110 (316)
T d1oria_ 105 ISEWMG 110 (316)
T ss_dssp EECCCB
T ss_pred eeeeee
Confidence 998663
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6e-09 Score=95.55 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 213 (337)
..+|.+|||+|||+|..+..+|+. +..+|+|+|.++ ++..++++.+.+|.. +|+++++|..++.... .+||+|
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D~i 109 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF---PKVDII 109 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---SCEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---cceeEE
Confidence 357999999999999999877775 446999999996 678899999998875 5999999999886443 579999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
+++..
T Consensus 110 ~se~~ 114 (328)
T d1g6q1_ 110 ISEWM 114 (328)
T ss_dssp EECCC
T ss_pred EEEec
Confidence 98765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.80 E-value=3.2e-08 Score=87.14 Aligned_cols=119 Identities=19% Similarity=0.161 Sum_probs=87.8
Q ss_pred hhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019692 124 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 202 (337)
Q Consensus 124 ~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 202 (337)
.....+...++..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+. +|+++.+|+.+..+
T Consensus 67 ~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~ 144 (253)
T d1tw3a2 67 VAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP 144 (253)
T ss_dssp TTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc
Confidence 344455666777788899999999999999999985 5578999998 67899999999999874 59999999865332
Q ss_pred CCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 203 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 203 ~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
.+||+|++- .++.. ++.++ ..++|+++.+.+++ |+|+.....
T Consensus 145 -----~~~D~v~~~------~vlh~-----------------~~d~~-------~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 145 -----RKADAIILS------FVLLN-----------------WPDHD-------AVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp -----SCEEEEEEE------SCGGG-----------------SCHHH-------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -----cchhheeec------ccccc-----------------CCchh-------hHHHHHHHHHhcCCCcEEEEEecc
Confidence 469999852 12221 11221 24789999998887 666665443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=6.7e-09 Score=88.36 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
.++++|||+|||+|..+..+ .+++|+|+|+.+++.++++ ++.++++|+.+++..+ ++||+|++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~---~~fD~I~~ 97 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD---ESFDFALM 97 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT---TCEEEEEE
T ss_pred CCCCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc-------cccccccccccccccc---cccccccc
Confidence 45779999999999877655 2478999999999988763 5889999999887543 67999994
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
+ .++..-+| ..++|.++.+++++ |.++.++..
T Consensus 98 ----~--~~l~h~~d--------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 98 ----V--TTICFVDD--------------------------PERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp ----E--SCGGGSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ----c--cccccccc--------------------------cccchhhhhhcCCCCceEEEEecC
Confidence 2 23322111 13578888888887 777766543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=2.9e-08 Score=93.20 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=63.4
Q ss_pred HHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-------C--CcEEE-EeccCC
Q 019692 129 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------A--ANIEV-LHGDFL 198 (337)
Q Consensus 129 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-------~--~~v~~-~~~D~~ 198 (337)
+...+++++|++|||+|||+|..+.++|...+ .++|+|+|+++.+++.|+++++..+ . ..+.+ ..+++.
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 44667899999999999999999999998864 4689999999999999999988643 1 22333 445554
Q ss_pred CCCCCCCCCCCccEEEEC
Q 019692 199 NLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 199 ~~~~~~~~~~~fD~IlvD 216 (337)
..+..+..+..+|+|+++
T Consensus 287 ~~~~~d~~~~~adVV~in 304 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVN 304 (406)
T ss_dssp TCHHHHHHGGGCSEEEEC
T ss_pred hccccccccccceEEEEe
Confidence 332211113457888875
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.66 E-value=1e-08 Score=97.23 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=106.9
Q ss_pred cCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC------------CEEEEEeCCHHHHHHHHHHHH
Q 019692 116 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK------------GKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~------------g~V~avD~~~~~l~~l~~~~~ 183 (337)
.|.|+-...-+.+++..+++.++.+|+|.|||+|++.+.+.+.+... ..++++|+++.....++-|+-
T Consensus 141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 37777777778888999999999999999999999998888776432 249999999999999999998
Q ss_pred HhCCC--cEEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 019692 184 LSGAA--NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKAL 261 (337)
Q Consensus 184 ~~g~~--~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL 261 (337)
..|+. +..+..+|...... ..+||+|+.+||.+....-.. +....... .. . ...+...|
T Consensus 221 l~g~~~~~~~i~~~d~l~~~~----~~~fD~Ii~NPPfg~~~~~~~--~~~~~~~~----~~---~------~~~~~~Fi 281 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSV--DINRPDFY----VE---T------KNNQLNFL 281 (425)
T ss_dssp HTTCCSSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCC--CCCCTTSS----SC---C------SCHHHHHH
T ss_pred hcCCccccceeecCchhhhhc----ccccceEEecCCCCCCccccc--hhhhhhcc----cc---c------ccHHHHHH
Confidence 88764 35677788765432 357999999999865432111 11000000 00 0 11244578
Q ss_pred HHHhCCCCC-cEEEEE--cCCCCcccCHHHHHHHh
Q 019692 262 RHALSFPGV-ERVVYS--TCSIHQVENEDVIKSVL 293 (337)
Q Consensus 262 ~~A~~~~~~-G~lvYs--TCS~~~~ENe~vv~~~l 293 (337)
.++++++++ |++++. ..+++....+.-+.+.|
T Consensus 282 ~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L 316 (425)
T d2okca1 282 QHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 316 (425)
T ss_dssp HHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence 888888876 755554 34454433334444444
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=3.8e-08 Score=82.47 Aligned_cols=125 Identities=25% Similarity=0.300 Sum_probs=85.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCCC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE 209 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~~~~ 209 (337)
.+++..|||+|||||+++..+.+...+.++|+++|+.+- ..++++.++++|+.+.... .....+
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 478999999999999999999998888899999998762 1367899999998764311 001257
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHH
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDV 288 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~v 288 (337)
||+|+.|...--+|. ...+-....++-...|.-|.+++++ |.+| |-+...+....
T Consensus 89 ~DlVlSD~ap~~sg~---------------------~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV---~K~F~g~~~~~ 144 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGT---------------------PAVDIPRAMYLVELALEMCRDVLAPGGSFV---VKVFQGEGFDE 144 (180)
T ss_dssp EEEEEECCCCCCCSC---------------------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEESSTTHHH
T ss_pred eeEEEecccchhccc---------------------chhHHHHHHHHHHHHHHhhhhccCCCCcEE---EEEecCccHHH
Confidence 999999966444442 1223334445555666667776765 7776 55555555555
Q ss_pred HHHHhc
Q 019692 289 IKSVLP 294 (337)
Q Consensus 289 v~~~l~ 294 (337)
+...|.
T Consensus 145 l~~~l~ 150 (180)
T d1ej0a_ 145 YLREIR 150 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.59 E-value=3.5e-08 Score=86.54 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=72.3
Q ss_pred hHHHHHHhCCCCC--CeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEe
Q 019692 126 SSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEVLH 194 (337)
Q Consensus 126 s~l~~~~l~~~~g--~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~---------~~v~~~~ 194 (337)
...++.++..+++ .+|||++||.|.-++.+|.. .++|+++|.++.....++++++++.. .++++++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 3456667776655 48999999999999999987 37899999999999999988887632 3799999
Q ss_pred ccCCCCCCCCCCCCCccEEEECCCC
Q 019692 195 GDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 195 ~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+.++..... ..||+|++||+.
T Consensus 152 ~Ds~~~L~~~~--~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDIT--PRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTCS--SCCSEEEECCCC
T ss_pred CcHHHHHhccC--CCCCEEEECCCC
Confidence 99887765432 569999999994
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.54 E-value=1.1e-07 Score=83.04 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=70.1
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..++..++++++++|||+|||+|..|..|++. ..+|+|+|+|++.++.++++... .+|++++++|+.+++...
T Consensus 11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~-- 83 (235)
T d1qama_ 11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-- 83 (235)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--
T ss_pred HHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc--
Confidence 44566678899999999999999999999987 36899999999999999987643 468999999999876432
Q ss_pred CCCccEEEECCCCC
Q 019692 207 YSEVRAILLDPSCS 220 (337)
Q Consensus 207 ~~~fD~IlvDpPCS 220 (337)
.....|+.+.|..
T Consensus 84 -~~~~~vv~NLPYn 96 (235)
T d1qama_ 84 -NQSYKIFGNIPYN 96 (235)
T ss_dssp -SCCCEEEEECCGG
T ss_pred -cccceeeeeehhh
Confidence 2335788888854
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=1.1e-07 Score=92.49 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=101.3
Q ss_pred hcCeEEEechhhHHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCC-----------------CEEEEEeCCHHHHHH
Q 019692 115 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRR 177 (337)
Q Consensus 115 ~~G~~~~Qd~ss~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----------------g~V~avD~~~~~l~~ 177 (337)
..|.|+-...-+.+++.++.++++.+|+|.|||+|++.+.+...+... ..++++|+++...+.
T Consensus 142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 347788777788889999999999999999999999988877765321 258999999999999
Q ss_pred HHHHHHHhCCCc-----EEEEeccCCCCCCCCCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHH
Q 019692 178 LKDTIKLSGAAN-----IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK 252 (337)
Q Consensus 178 l~~~~~~~g~~~-----v~~~~~D~~~~~~~~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (337)
++-|+--.|... -.+...+....+.. ...+||+|+.+||.+...-..+..... .. .
T Consensus 222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~---------~~-~------- 282 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFV---------HP-T------- 282 (524)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCS---------SC-C-------
T ss_pred HHHHHHhhcccccccccchhhhhhhhhhccc--ccccceeEEecCCccccccccchhhhc---------cc-c-------
Confidence 999987766531 12233333221111 125799999999987543221110000 00 0
Q ss_pred HHHHHHHHHHHHhCCCCC-cEEEEEc-CCCC-cccCHHHHHHHh
Q 019692 253 LSAFQKKALRHALSFPGV-ERVVYST-CSIH-QVENEDVIKSVL 293 (337)
Q Consensus 253 l~~~Q~~lL~~A~~~~~~-G~lvYsT-CS~~-~~ENe~vv~~~l 293 (337)
...+...+.++++.+++ |++++.+ -++. ..-.+..+.+.|
T Consensus 283 -~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~L 325 (524)
T d2ar0a1 283 -SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 325 (524)
T ss_dssp -SCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHH
T ss_pred -ccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHH
Confidence 11234678888888876 7766664 3432 322344565555
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.47 E-value=7.2e-07 Score=78.46 Aligned_cols=81 Identities=23% Similarity=0.227 Sum_probs=65.9
Q ss_pred HHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019692 128 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 128 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 206 (337)
.+...++.....+|||+|||+|..+..+++.. +..+++++|+ +..++.++++++..|.. ++.++.+|+....+
T Consensus 72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p---- 145 (256)
T d1qzza2 72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---- 145 (256)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----
T ss_pred HHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc----
Confidence 34445566777899999999999999999985 5679999997 78999999999999875 49999999875321
Q ss_pred CCCccEEEE
Q 019692 207 YSEVRAILL 215 (337)
Q Consensus 207 ~~~fD~Ilv 215 (337)
..||+|++
T Consensus 146 -~~~D~v~~ 153 (256)
T d1qzza2 146 -VTADVVLL 153 (256)
T ss_dssp -CCEEEEEE
T ss_pred -ccchhhhc
Confidence 35899986
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2e-07 Score=81.34 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=41.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 186 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g 186 (337)
..+|.+|||+|||+|..+..++.. +...|+|+|+|+.+++.++++++..+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~ 98 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEP 98 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhcc
Confidence 456889999999999888766553 22479999999999999999987654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2.2e-07 Score=82.46 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=72.1
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcC----C-CCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEE--EeccCCCCC---CC
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMK----G-KGKIVACELNKERVRRLKDTIKLSG-AANIEV--LHGDFLNLD---PK 203 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~----~-~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~--~~~D~~~~~---~~ 203 (337)
.+++.+|||+|||+|..+..++..+. + ...++++|+|+.+++.++++++... +.++.+ ...++..+. ..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 34555899999999999988877542 1 2368999999999999999987643 344443 444433210 00
Q ss_pred CCCCCCccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCC
Q 019692 204 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCS 279 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS 279 (337)
....++||+|++ +. ++..-+| -...|++..+++++ |.++.++.+
T Consensus 118 ~~~~~~fD~I~~----~~--~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 118 KKELQKWDFIHM----IQ--MLYYVKD--------------------------IPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSSCCCEEEEEE----ES--CGGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCCceeEEEE----cc--ceecCCC--------------------------HHHHHHHHHhhCCCCCEEEEEEec
Confidence 111368999985 22 2221111 13678888888887 666665443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.4e-06 Score=77.58 Aligned_cols=86 Identities=27% Similarity=0.354 Sum_probs=71.8
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~ 205 (337)
..++..+++.+++.||++|+|+|..|..|++. ..+|+|+|+|+..+..+++.+..... .+++++++|+...+.
T Consensus 11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--- 84 (278)
T d1zq9a1 11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--- 84 (278)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC---
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh---
Confidence 34566678889999999999999999999987 36999999999999999998876543 579999999988753
Q ss_pred CCCCccEEEECCCCC
Q 019692 206 AYSEVRAILLDPSCS 220 (337)
Q Consensus 206 ~~~~fD~IlvDpPCS 220 (337)
..++.|+.+.|..
T Consensus 85 --~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 --PFFDTCVANLPYQ 97 (278)
T ss_dssp --CCCSEEEEECCGG
T ss_pred --hhhhhhhcchHHH
Confidence 2357899999954
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.24 E-value=7.8e-08 Score=84.40 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=71.1
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 206 (337)
..++..+++.+++.|||+|||+|..|..|++. ..+|+|+|+|+.+++.+++++. +..|++++++|+.+++...
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~-- 91 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN-- 91 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC--
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcccccc--
Confidence 45667788999999999999999999999987 3689999999999988876654 2368999999999886542
Q ss_pred CCCccEEEECCCCC
Q 019692 207 YSEVRAILLDPSCS 220 (337)
Q Consensus 207 ~~~fD~IlvDpPCS 220 (337)
..++.|+.+-|..
T Consensus 92 -~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 -KQRYKIVGNIPYH 104 (245)
T ss_dssp -SSEEEEEEECCSS
T ss_pred -ceeeeEeeeeehh
Confidence 4567888888854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=8.7e-06 Score=69.11 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=65.1
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
++.+|+|+|+|.|-=++.+|-. .+..+++.+|.+..++.-+++....+|++||++++.+++++... .+||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~----~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE----PPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC----SCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccc----cccceehh
Confidence 3568999999999999988876 46689999999999999999999999999999999999987543 46999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=3e-06 Score=74.61 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=38.6
Q ss_pred CCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Q 019692 134 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 184 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~ 184 (337)
....|.+|||+|||||..++..+.. ...+|+|+|.++.+++.+++.++.
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~ 99 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQE 99 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhc
Confidence 3456899999999999776544433 235899999999999999987754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.93 E-value=9.4e-06 Score=70.35 Aligned_cols=80 Identities=8% Similarity=0.047 Sum_probs=67.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+.+|+|+|+|.|.=++.+|-+. +..+|+-+|.+..++.-+++..+++|++|+.+++..++++........+||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 456799999999999999888775 5689999999999999999999999999999999988877544322367999986
Q ss_pred C
Q 019692 216 D 216 (337)
Q Consensus 216 D 216 (337)
=
T Consensus 148 R 148 (239)
T d1xdza_ 148 R 148 (239)
T ss_dssp E
T ss_pred h
Confidence 3
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=9.2e-06 Score=72.67 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=64.9
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPA 206 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~ 206 (337)
..+.+. ..+||-+|.|.|+.+..+.+.. +..+|++||+|+..++.+++.+.... -++++++.+|+..+.....
T Consensus 84 l~~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~- 160 (295)
T d1inla_ 84 MFLHPN-PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK- 160 (295)
T ss_dssp HHHSSS-CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS-
T ss_pred HhhCCC-CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC-
Confidence 334444 4799999999998887777652 34689999999999999999775432 2469999999988765442
Q ss_pred CCCccEEEECCCCC
Q 019692 207 YSEVRAILLDPSCS 220 (337)
Q Consensus 207 ~~~fD~IlvDpPCS 220 (337)
.+||+|++|++..
T Consensus 161 -~~yDvIi~D~~dp 173 (295)
T d1inla_ 161 -NEFDVIIIDSTDP 173 (295)
T ss_dssp -SCEEEEEEEC---
T ss_pred -CCCCEEEEcCCCC
Confidence 6799999998754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=1e-05 Score=72.93 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCCCCCCCCCcc
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~--g---~~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
...+||.+|.|.|+.+..+.+. .+..+|++||+++..++.+++.+... + -++++++.+|+..+.... ..+||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEE
T ss_pred CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--CCccc
Confidence 4579999999999888877665 34579999999999999999988653 2 246999999998875443 25799
Q ss_pred EEEECCC
Q 019692 212 AILLDPS 218 (337)
Q Consensus 212 ~IlvDpP 218 (337)
+|++|++
T Consensus 154 vIi~D~~ 160 (312)
T d1uira_ 154 VVIIDLT 160 (312)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999986
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=6.8e-06 Score=71.93 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=69.3
Q ss_pred HHHHHHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-
Q 019692 127 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP- 205 (337)
Q Consensus 127 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~- 205 (337)
..++..+++.+++.||++|+|+|..|..|++. ..+|+|+|+|+..++.+++.... -+|++++++|+..++....
T Consensus 11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhcccccc
Confidence 34567778899999999999999999999875 36899999999999998875432 2579999999988753210
Q ss_pred -CCCCccEEEECCCCCCc
Q 019692 206 -AYSEVRAILLDPSCSGS 222 (337)
Q Consensus 206 -~~~~fD~IlvDpPCSg~ 222 (337)
..+..-.|+.+.|.+-+
T Consensus 86 ~~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HHHTSCEEEEEECCTTTH
T ss_pred cccCCCeEEEecchHHHH
Confidence 00122378899997644
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.74 E-value=6.5e-05 Score=66.32 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh-CC---CcEEEEeccCCCCCCCCCCCCCcc
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GA---ANIEVLHGDFLNLDPKDPAYSEVR 211 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~-g~---~~v~~~~~D~~~~~~~~~~~~~fD 211 (337)
....+||-+|.|.|+.+..+.+. .+..+|+.+|+|+..++.+++.+... +. ++++++.+|+..+.... ..+||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~--~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc--CCCCC
Confidence 34579999999999988877764 24579999999999999999987543 22 46999999998765443 26799
Q ss_pred EEEECCCCC
Q 019692 212 AILLDPSCS 220 (337)
Q Consensus 212 ~IlvDpPCS 220 (337)
+|++|++..
T Consensus 151 vIi~D~~~p 159 (274)
T d1iy9a_ 151 VIMVDSTEP 159 (274)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999999854
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=6.6e-05 Score=66.64 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~----g~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
...+||-+|.|.|+.+..+.+. .+..+|+.+|+++..++.+++.+... .-++++++.+|+..+.... .++||+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~~yDv 154 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--QDAFDV 154 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--SSCEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--CCCCCE
Confidence 4579999999999988887765 24579999999999999999987542 1246999999988776443 257999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
|++|++
T Consensus 155 Ii~D~~ 160 (285)
T d2o07a1 155 IITDSS 160 (285)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999987
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.51 E-value=5.9e-05 Score=67.68 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
...+||-+|.|.|+.+..+.+. .+..+|+.+|+++..++.+++.+..+. -++++++.+|+..+.... ..+||+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~--~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC--CCCCCE
Confidence 3569999999999988877664 234699999999999999999875432 246999999998775443 267999
Q ss_pred EEECCCC
Q 019692 213 ILLDPSC 219 (337)
Q Consensus 213 IlvDpPC 219 (337)
|++|++-
T Consensus 183 II~D~~d 189 (312)
T d2b2ca1 183 IITDSSD 189 (312)
T ss_dssp EEECCC-
T ss_pred EEEcCCC
Confidence 9999884
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.49 E-value=3.4e-05 Score=68.22 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=61.9
Q ss_pred CCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh----------CCCcEEEEeccCCCCCCCCC
Q 019692 136 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----------GAANIEVLHGDFLNLDPKDP 205 (337)
Q Consensus 136 ~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~----------g~~~v~~~~~D~~~~~~~~~ 205 (337)
....+||.+|.|.|+.+..+.+. +..+|+++|+|+..++.+++.+... .-++++++.+|+..+....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~- 147 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN- 147 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC-
T ss_pred CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc-
Confidence 44679999999999888777653 4468999999999999998765321 1246999999998765432
Q ss_pred CCCCccEEEECCCC
Q 019692 206 AYSEVRAILLDPSC 219 (337)
Q Consensus 206 ~~~~fD~IlvDpPC 219 (337)
++||+|++|++.
T Consensus 148 --~~yDvIi~D~~~ 159 (276)
T d1mjfa_ 148 --RGFDVIIADSTD 159 (276)
T ss_dssp --CCEEEEEEECCC
T ss_pred --CCCCEEEEeCCC
Confidence 579999999985
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.47 E-value=0.00023 Score=63.06 Aligned_cols=79 Identities=15% Similarity=0.314 Sum_probs=61.7
Q ss_pred eEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCCC
Q 019692 140 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 219 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpPC 219 (337)
+|+|++||.||.+..+... +-..+.++|+++.+++..+.|. + -.++.+|..++.... ..++|+++.-|||
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~-~~~~~~Di~~~~~~~--~~~~dll~~g~PC 71 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSDE--FPKCDGIIGGPPC 71 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----C-SEEEESCTTTSCGGG--SCCCSEEEECCCC
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C-CCCccCChhhCCHhH--cccccEEeecccc
Confidence 6999999999998877664 2235679999999998888774 2 245779998886543 3579999999999
Q ss_pred CCccccCcc
Q 019692 220 SGSGTAAER 228 (337)
Q Consensus 220 Sg~G~~~~~ 228 (337)
.+.....++
T Consensus 72 q~fS~ag~~ 80 (324)
T d1dcta_ 72 QSWSEGGSL 80 (324)
T ss_dssp TTTSSSSCC
T ss_pred ccccccccc
Confidence 998766543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=0.00032 Score=62.23 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=84.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
...+||=+|.|.|+.+..+.+. .+..+|+.+|+|+..++.+++.+.... -++++++.+|+..+..... .++||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-ccCccE
Confidence 3469999999999988877664 234689999999999999999764322 2469999999877653322 257999
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCcccCHHHHHH
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKS 291 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsTCS~~~~ENe~vv~~ 291 (337)
|++|++... |.-. . + .+.+..+...+.|++ |.+|.-+-| +..+.+.+..
T Consensus 158 Ii~D~~dp~-~~~~----~-L----------------------~t~eF~~~~~~~L~~~Gi~v~q~~s--~~~~~~~~~~ 207 (290)
T d1xj5a_ 158 VIVDSSDPI-GPAK----E-L----------------------FEKPFFQSVARALRPGGVVCTQAES--LWLHMDIIED 207 (290)
T ss_dssp EEECCCCTT-SGGG----G-G----------------------GSHHHHHHHHHHEEEEEEEEEECCC--TTTCHHHHHH
T ss_pred EEEcCCCCC-Ccch----h-h----------------------CCHHHHHHHHHhcCCCcEEEEecCC--cHHHHHHHHH
Confidence 999998532 2210 0 0 124555666666666 777765444 3445555555
Q ss_pred Hhc
Q 019692 292 VLP 294 (337)
Q Consensus 292 ~l~ 294 (337)
+++
T Consensus 208 i~~ 210 (290)
T d1xj5a_ 208 IVS 210 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.29 E-value=0.00024 Score=63.41 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
.+.+|+|++||.||.+..+... +-..|.|+|+++.+++..+.|.. + ..++|..++.... ...+|+|+.-
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~--~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKT--IPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGG--SCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhh--cceeeeeecc
Confidence 4789999999999999887654 22357889999999999998862 1 2357888776543 3579999999
Q ss_pred CCCCCccccCc
Q 019692 217 PSCSGSGTAAE 227 (337)
Q Consensus 217 pPCSg~G~~~~ 227 (337)
|||.+.....+
T Consensus 79 pPCq~fS~ag~ 89 (327)
T d2c7pa1 79 FPCQAFSISGK 89 (327)
T ss_dssp CCCTTTCTTSC
T ss_pred cccchhhhhhh
Confidence 99998876654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=6e-05 Score=67.66 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=53.9
Q ss_pred CeEEeecCCchhHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECC
Q 019692 139 WKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 217 (337)
Q Consensus 139 ~~VLDl~aG~G~kt~~la~~~~~~g-~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDp 217 (337)
.+|+|++||.||.+..+... +-.. .|.|+|+++.+++..+.|. .+..++++|..++....-....+|+++.-|
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 47999999999998877554 2112 3789999999999888773 334567788877654321112689999999
Q ss_pred CCCCccccCc
Q 019692 218 SCSGSGTAAE 227 (337)
Q Consensus 218 PCSg~G~~~~ 227 (337)
||.+..+..+
T Consensus 77 PCq~fS~ag~ 86 (343)
T d1g55a_ 77 PCQPFTRIGR 86 (343)
T ss_dssp C---------
T ss_pred cccccccccc
Confidence 9999877654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.20 E-value=0.00011 Score=63.38 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc-CCCCCCCCCCCCCccEE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD-FLNLDPKDPAYSEVRAI 213 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D-~~~~~~~~~~~~~fD~I 213 (337)
++++.+|+|+|||||+.+..++... +...|.|+++--.... .-...+.++.+-+++...+ +...+ ...+|.|
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~-----~~~~D~v 136 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIP-----PERCDTL 136 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSC-----CCCCSEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcC-----CCcCCEE
Confidence 5788899999999999999888763 2246777777311100 0000111222225554443 22222 2569999
Q ss_pred EECCC
Q 019692 214 LLDPS 218 (337)
Q Consensus 214 lvDpP 218 (337)
+||.-
T Consensus 137 lcDm~ 141 (257)
T d2p41a1 137 LCDIG 141 (257)
T ss_dssp EECCC
T ss_pred EeeCC
Confidence 99964
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.14 E-value=0.00013 Score=63.33 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCC---------------------------------------CCEEEEEeCCHHHHHH
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKG---------------------------------------KGKIVACELNKERVRR 177 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~---------------------------------------~g~V~avD~~~~~l~~ 177 (337)
.+..++|-|||+|.+.+..|-...+ ...+++.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 3457999999999887766654211 1257899999999988
Q ss_pred H---HHHHHHhCCCc-EEEEeccCCCCCCCC--CCCCCccEEEECCCC
Q 019692 178 L---KDTIKLSGAAN-IEVLHGDFLNLDPKD--PAYSEVRAILLDPSC 219 (337)
Q Consensus 178 l---~~~~~~~g~~~-v~~~~~D~~~~~~~~--~~~~~fD~IlvDpPC 219 (337)
+ ++|+++.|+.. |.+...|+.+..+.. ......++|++|||.
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 7 56999999865 999999987654211 001356899999994
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.79 E-value=0.00035 Score=57.04 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 130 AAALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+...++++|++|+=+|||+ |..+.++++.+ +..+|+++|.++++++.++ ++|...
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~----~lGa~~ 75 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAK----FYGATD 75 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHH----HHTCSE
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHH----hhCccc
Confidence 4557899999999999988 66677778765 3457999999999988775 567653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.75 E-value=0.00032 Score=60.13 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=66.3
Q ss_pred cCeEEEechhhHHHHH-HhCCCCCCeEEeecCCchhHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019692 116 NGCVFLQGKASSMVAA-ALAPKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIE 191 (337)
Q Consensus 116 ~G~~~~Qd~ss~l~~~-~l~~~~g~~VLDl~aG~G~kt~~la~~~---~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~ 191 (337)
.|.-.+|.+.-+.+.. ++.-....+||++|++.|+.++.++..+ +..++|+++|+++.+..... ...++|+
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~ 132 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENIT 132 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEE
T ss_pred cceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cccccee
Confidence 3777788766655443 2221234599999999999998888765 45789999999876543221 1236799
Q ss_pred EEeccCCCCCCCC-CCCCCccEEEECCC
Q 019692 192 VLHGDFLNLDPKD-PAYSEVRAILLDPS 218 (337)
Q Consensus 192 ~~~~D~~~~~~~~-~~~~~fD~IlvDpP 218 (337)
++.+|..+..... -....+|.|++|.-
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 9999987543211 11235899999964
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.0019 Score=57.85 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 200 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~ 200 (337)
.++.|||+|.|+|..|..+..... ..+|+++|+|+..++.+++..+ -.+++++++|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 467899999999999999988642 3589999999999999987653 25689999998754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.50 E-value=0.0016 Score=55.38 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=37.6
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 183 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~ 183 (337)
-.+|+.|||.+||+|..+. .|..+ +.+-+++|++++-++.++++++
T Consensus 210 s~~gd~VlDpF~GSGTT~~-aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAI-VAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHH-HHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHH-HHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 3689999999999996543 33333 4689999999999999999986
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.43 E-value=0.015 Score=47.67 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=31.3
Q ss_pred CCeEEeecCCchhHHHHHH----HHcCC---CCEEEEEeCCHHHHHHHHH
Q 019692 138 GWKVLDACSAPGNKTVHLA----ALMKG---KGKIVACELNKERVRRLKD 180 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la----~~~~~---~g~V~avD~~~~~l~~l~~ 180 (337)
.-+||++|||+|-=+..|| +.... .-+|+|.|+|+..++.+++
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 4489999999998543333 32221 2379999999999998873
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.36 E-value=0.0053 Score=52.56 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred HhC-CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCCC
Q 019692 132 ALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 132 ~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
..+ .....+|||+|||+|..+..+++.. +..+++..|+- ..+ +..+ .++|+++.+|+.+.. ..
T Consensus 75 ~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~------p~ 139 (244)
T d1fp1d2 75 IYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASV------PQ 139 (244)
T ss_dssp HCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCC------CC
T ss_pred hcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhh-------hccCCCCCeEEecCCccccc------cc
Confidence 344 3446799999999999999999985 56799999973 332 2222 356999999986532 23
Q ss_pred ccEEEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 019692 210 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 277 (337)
Q Consensus 210 fD~IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~-G~lvYsT 277 (337)
.|+|++- -++.. |+.++ -..||+++.+.+++ |+|+-..
T Consensus 140 ~D~~~l~------~vLh~-----------------~~de~-------~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 140 GDAMILK------AVCHN-----------------WSDEK-------CIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEEEE------SSGGG-----------------SCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEe------hhhhh-----------------CCHHH-------HHHHHHHHHHHcCCCcEEEEEE
Confidence 5888751 12211 12322 25788888887776 6555543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.33 E-value=0.0027 Score=54.60 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=39.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
-.+|+.|||.+||+|..+.+ |..+ +.+.+++|+++..++.++++++..
T Consensus 205 s~~gdiVLDpF~GSGTT~~A-a~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARV-AIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHH-HHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHH-HHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 36899999999999965443 3333 368999999999999999999875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.21 E-value=0.007 Score=49.87 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=42.5
Q ss_pred HHHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 130 AAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
....++++|++||.+|||+.+ .+.++++.+ +..+|+++|.++.+++.++ ++|..
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~----~~Ga~ 72 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGFE 72 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCE
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhh----hcccc
Confidence 455789999999999999955 566677665 4579999999999998765 45654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.07 E-value=0.0024 Score=51.65 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHhCCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPAY 207 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~--~~~~ 207 (337)
..+++++|++||=+|||+-+. +.++++.+ +...|+++|.++.+++.+++ +|...+ +..+-.+.... ....
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~----~Ga~~~--i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGATHV--INSKTQDPVAAIKEITD 94 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHH----cCCeEE--EeCCCcCHHHHHHHHcC
Confidence 346789999999999987664 55566665 44688999999999887654 576543 33222221110 0001
Q ss_pred CCccEEEECCCCCCc
Q 019692 208 SEVRAILLDPSCSGS 222 (337)
Q Consensus 208 ~~fD~IlvDpPCSg~ 222 (337)
+.||+|+- |+|.
T Consensus 95 gg~D~vid---~~G~ 106 (174)
T d1f8fa2 95 GGVNFALE---STGS 106 (174)
T ss_dssp SCEEEEEE---CSCC
T ss_pred CCCcEEEE---cCCc
Confidence 36898885 5554
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.97 E-value=0.0024 Score=55.95 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHh
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 185 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~ 185 (337)
-.+|+.|||.+||+|..+. .|..+ +.+.+++|++++.++.+++++...
T Consensus 248 s~~gdiVlDpF~GSGTT~~-AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGL-VAERE--SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHH-HHHHT--TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHH-HHHHc--CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 3689999999999996443 33343 468999999999999998887654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0069 Score=48.42 Aligned_cols=75 Identities=13% Similarity=0.032 Sum_probs=49.4
Q ss_pred HhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 019692 132 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 210 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 210 (337)
...+++|++|+-+|+|+ |..+.++++.+ ..+|+++|.++++++.++ ++|.+.+. ...+-.+..... .+.|
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~----~lGa~~~i-~~~~~~~~~~~~--~~~~ 92 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAM----KMGADHYI-ATLEEGDWGEKY--FDTF 92 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHH----HHTCSEEE-EGGGTSCHHHHS--CSCE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhh----ccCCcEEe-eccchHHHHHhh--hccc
Confidence 45789999999999984 44567777775 368999999999987655 56876432 212211111111 2568
Q ss_pred cEEEE
Q 019692 211 RAILL 215 (337)
Q Consensus 211 D~Ilv 215 (337)
|.|+.
T Consensus 93 d~vi~ 97 (168)
T d1piwa2 93 DLIVV 97 (168)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98885
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.08 E-value=0.014 Score=46.64 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCCCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 134 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 134 ~~~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.++||+.||-.|+|+.+.. .++++.+ +...|+++|.++++++.++ ++|...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~----~~ga~~ 80 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAE----RLGADH 80 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhh-cCcccccccchhHHHHHHh----hcccce
Confidence 4689999999999887754 5666665 3468999999999887766 456553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.04 E-value=0.0082 Score=47.89 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHhCCCCCCeEEeecC-Cchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 130 AAALAPKPGWKVLDACS-APGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~a-G~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....++++|++||=.|+ |+.+ .+.+++... +...|+++|.++.+++.+++ +|.+.
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~----~Ga~~ 76 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGADY 76 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCSE
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHH----cCCce
Confidence 34567899999999996 5444 456666665 44699999999999887764 57653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.93 E-value=0.022 Score=45.83 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHhCCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|+.|+=+|||+.+. +.++++.+ +..+|+++|.++++++.+++ +|.+.
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~----~GA~~ 77 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMA----VGATE 77 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----HTCSE
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHh----cCCcE
Confidence 345689999999999998875 44555554 45799999999999987654 57653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.89 E-value=0.76 Score=39.80 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=76.4
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 212 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 212 (337)
+.+|.+||=.| |+|..+.+++..+ ..+..|++...+......+++....... ....++.+|..+...-......+|.
T Consensus 8 ~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 8 LPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 35688999666 5699999998754 4446899999888887777665554443 3366678888766544333456788
Q ss_pred EEECCCCCCccccCcccCccCCCCCCCCCCCcccHHHH-HHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 019692 213 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL-NKLSAFQKKALRHALSFPGVERVVYST 277 (337)
Q Consensus 213 IlvDpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~l~~~Q~~lL~~A~~~~~~G~lvYsT 277 (337)
|+.-+-..+... ++... ..-..--..+|+.+.+......+||++
T Consensus 87 v~~~a~~~~~~~---------------------~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S 131 (342)
T d1y1pa1 87 VAHIASVVSFSN---------------------KYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131 (342)
T ss_dssp EEECCCCCSCCS---------------------CHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred hhhhcccccccc---------------------cccccccchhhhHHHHHHhhhcccccccccccc
Confidence 886544322110 12222 223344567888887764456777754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.86 E-value=0.028 Score=45.20 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=40.4
Q ss_pred hCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 133 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 133 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
.++++|++||-+|||+ |..+.++|+.++ ..+|+++|.++++++.++ ++|...
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~ 76 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADL 76 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred hCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceE
Confidence 4678999999999886 556777887753 358999999999998665 457653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.048 Score=43.24 Aligned_cols=56 Identities=27% Similarity=0.317 Sum_probs=42.2
Q ss_pred HHHhCCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 130 AAALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 130 ~~~l~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
....++++|++|+=+|||+.|. +.+++..+ +..+|+++|.++++++.++ ++|.+.+
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~----~~Ga~~~ 75 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADLV 75 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSEE
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHH----HhCCccc
Confidence 3446789999999999998875 44555554 4458999999999998765 4577643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.72 E-value=0.026 Score=44.91 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHhCCCCCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...++++|++|+=.|+|+++....+.....+...|+++|.++++++.++ ++|.+.
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~ 76 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD 76 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence 3457899999999999997765544333345679999999999987654 578764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.58 E-value=0.039 Score=50.35 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEe
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAA----NIEVLH 194 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~----~v~~~~ 194 (337)
+.+++.++|+||-.|..+..++....+. .+|+|+|.++...+.+++|++.++.. +|.+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 5678899999999999998888776543 68999999999999999999987653 355544
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.57 E-value=0.054 Score=45.96 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 215 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Ilv 215 (337)
..+|+|+|+|+|..+..+++.. +..+++..|.. ..++ ..+. ++|+++.+|+.+.. ..+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~-------~~~~~~rv~~~~gD~f~~~------p~aD~~~l 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVE-------NLSGSNNLTYVGGDMFTSI------PNADAVLL 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHT-------TCCCBTTEEEEECCTTTCC------CCCSEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHH-------hCcccCceEEEecCcccCC------CCCcEEEE
Confidence 4689999999999999999985 55799999983 3332 2332 56999999987632 24688885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.54 E-value=0.026 Score=45.27 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=42.1
Q ss_pred HHhCCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
+...+++|++||=+|||+.+. +.++++.+ +..+|+++|.++++++.++ ++|...
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~----~lGa~~ 75 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE 75 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHH----HcCCcE
Confidence 446789999999999998875 45566665 4578999999999998765 568664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.34 E-value=0.066 Score=42.20 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|++||-+|||+-| .+.++++.. + .+|+++|.++.+++.+++ +|...
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G-a~vi~v~~~~~r~~~a~~----~ga~~ 73 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-G-AFVVCTARSPRRLEVAKN----CGADV 73 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCSE
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhh-c-ccccccchHHHHHHHHHH----cCCcE
Confidence 44678999999999998654 566677765 3 599999999999887765 56553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.47 E-value=0.079 Score=42.06 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHhCCCCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019692 131 AALAPKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 188 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~ 188 (337)
....+++|++||=.|+|.++.+ .+++.. .+..+|+++|.++++++.++ ++|..
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~----~~Ga~ 75 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAK----EVGAT 75 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHH----HTTCS
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHH----HhCCe
Confidence 3457899999999999877754 444554 35579999999999988765 44655
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.23 E-value=0.048 Score=43.44 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=39.4
Q ss_pred HHhCCCCCCeEEeecC-Cc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 131 AALAPKPGWKVLDACS-AP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~a-G~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...++++|++||=.|+ |+ |..+.++|+.+ ..+|++++.++++++.++ ++|.+.+
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~----~lGa~~~ 76 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEEA 76 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSEE
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhccc--cccccccccccccccccc----cccccee
Confidence 3457899999998774 43 45667777775 368999999988877654 5787654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.23 E-value=0.074 Score=42.51 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=42.2
Q ss_pred HHhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....+++|++|+=+|||+ |..+.++++.+ +...|+++|.++++++.++ ++|...
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~----~~Ga~~ 76 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATD 76 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHH----HhCCCc
Confidence 446789999999999999 55677777775 4568999999999886544 567664
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.25 Score=41.74 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~-~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|..||=.|++ +|.+..+|..+ ..+.+|+.++.+++.++.+.+.++..+.+ ++.++..|..+.... ...++
T Consensus 10 ~Kv~lITGas-~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 6677777765 55677777655 34469999999999999999999988764 588889998764311 11246
Q ss_pred CccEEEECCCCC
Q 019692 209 EVRAILLDPSCS 220 (337)
Q Consensus 209 ~fD~IlvDpPCS 220 (337)
..|+++.++...
T Consensus 89 ~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 89 GVDICINNAGLA 100 (257)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEeccccc
Confidence 789999877533
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.17 Score=43.12 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=58.9
Q ss_pred CCeEEeecCCchhHHHHHHHHc-C-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALM-K-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~-~-~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
|.+|.=+.-|++|++..+|..+ . +...|+..+.+.++++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6777555556677887777654 2 356999999999999999999988774 478888998775421 11246
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
++|+++.++-
T Consensus 81 ~iDiLVnNAG 90 (275)
T d1wmaa1 81 GLDVLVNNAG 90 (275)
T ss_dssp SEEEEEECCC
T ss_pred CcEEEEEcCC
Confidence 7999999875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.79 E-value=0.19 Score=42.40 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=58.9
Q ss_pred CCeEEeecCCchhHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 019692 138 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 209 (337)
Q Consensus 138 g~~VLDl~aG~G~kt~~la~~~~~-~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 209 (337)
+..+|=.|+ ++|.+..+|..+.. ..+|+.+|.+++.++.+.+.++..|. ++..+..|+.+.... ...++.
T Consensus 10 nKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 10 NKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 556666664 55688888886643 45999999999999999999988774 478888998764311 122568
Q ss_pred ccEEEECCCCC
Q 019692 210 VRAILLDPSCS 220 (337)
Q Consensus 210 fD~IlvDpPCS 220 (337)
+|.++.++...
T Consensus 88 iDilvnnag~~ 98 (251)
T d2c07a1 88 VDILVNNAGIT 98 (251)
T ss_dssp CCEEEECCCCC
T ss_pred ceeeeeccccc
Confidence 99999877543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.54 E-value=0.18 Score=39.61 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHhCCCCCCeEEeecCCchh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...+++||++||=.|||..+ .+.++++.+ +...|+++|.++++++.++ ++|.+.
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak----~lGa~~ 76 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAK----EFGATE 76 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHH----HhCCcE
Confidence 34678999999998887555 456677766 3468999999999987654 568764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.45 E-value=0.32 Score=37.81 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHhCCCCCCeEEeecCCchhH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~k-t~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
...++++|++|+=.|+|+-|. +.++++.+ + .+|+++|.++.+++.++ ++|...
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G-~~Vi~~~~~~~~~~~a~----~~Ga~~ 74 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM-G-LHVAAIDIDDAKLELAR----KLGASL 74 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc-C-CccceecchhhHHHhhh----ccCccc
Confidence 446789999999999887664 55566665 3 69999999999987654 567654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.95 E-value=0.38 Score=40.21 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=42.0
Q ss_pred CCCeEEeecCCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNL 200 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g-~~~v~~~~~D~~~~ 200 (337)
...+|+|+|||+|..+..+++.. +..+++..|+-.. ++ ... ..++.++.+|+.+.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~ 136 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVS 136 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTC
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hh-------hcccCCceEEeccccccc
Confidence 35689999999999999999985 5689999998542 21 111 24699999998653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.84 E-value=0.098 Score=41.57 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=37.7
Q ss_pred HhCCCCCCeEEeec--CCchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 132 ALAPKPGWKVLDAC--SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 132 ~l~~~~g~~VLDl~--aG~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...+++|++||=.| .|.|..+.++|... +.+|+++..+++..+.++ ++|.+.+
T Consensus 20 ~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~v 74 (183)
T d1pqwa_ 20 VGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYV 74 (183)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEE
T ss_pred HhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----ccccccc
Confidence 34688999999755 34555677888776 368999888887776554 5687643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.47 Score=36.97 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHhCCCCCCeEEeecCCc-hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 019692 131 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 209 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 209 (337)
...++++|++||=.|+|+ |..+.++++.+ ..+++++|.++++.+.+ +++|.+.+ +...-..... ...+.
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a----~~lGad~~--i~~~~~~~~~--~~~~~ 93 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAA----KALGADEV--VNSRNADEMA--AHLKS 93 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHH----HHHTCSEE--EETTCHHHHH--TTTTC
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHH----hccCCcEE--EECchhhHHH--HhcCC
Confidence 456789999999998876 33567777765 35788999999887654 45687643 2211111111 11256
Q ss_pred ccEEEE
Q 019692 210 VRAILL 215 (337)
Q Consensus 210 fD~Ilv 215 (337)
+|.|+-
T Consensus 94 ~D~vid 99 (168)
T d1uufa2 94 FDFILN 99 (168)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 998886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.4 Score=37.59 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=39.7
Q ss_pred HhCCCCCCeEEeecC--CchhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 132 ALAPKPGWKVLDACS--APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 132 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...+++|++||-.|+ +.|..+.++|+.+ +.+|++++.++++.+.++ ++|.+.+
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~----~~Ga~~v 77 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHEV 77 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEE
T ss_pred HhCCCCCCEEEEEecccccccccccccccc--Cccccccccccccccccc----ccCcccc
Confidence 346889999999986 4555677888876 368999998988776654 5787653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.95 E-value=0.61 Score=36.46 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=39.8
Q ss_pred HhCCCCCCeEEeecCCc--hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 132 ALAPKPGWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 132 ~l~~~~g~~VLDl~aG~--G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
..++++|++||=.|+|. |..+.++|+.. ..+|++++.++++.+.++ ++|.+.
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~----~lGa~~ 76 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSAL----KAGAWQ 76 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----HHTCSE
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHH----hcCCeE
Confidence 34688999998875554 55678888876 379999999999987765 468764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.80 E-value=0.84 Score=35.08 Aligned_cols=53 Identities=25% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHhCCCCCCeEEeecCCchhHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019692 131 AALAPKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 189 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~ 189 (337)
....++||++||=.|+|+-|.. .++++.. ..+|+++|.++++++.++ ++|.+.
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k----~~Ga~~ 74 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAK----ELGADL 74 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTCSE
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhh----hcCcce
Confidence 3467899999999999887754 4455543 358999999999987654 467653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=0.29 Score=43.09 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=62.3
Q ss_pred ecCCchhHHHHHHHHc-CCCCEEEEEeCCH-----HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--CCCccEEEE
Q 019692 144 ACSAPGNKTVHLAALM-KGKGKIVACELNK-----ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--YSEVRAILL 215 (337)
Q Consensus 144 l~aG~G~kt~~la~~~-~~~g~V~avD~~~-----~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~~~fD~Ilv 215 (337)
+.-|+|..+.+++..+ ..+..|+++|... .+++.+...... .-.++.++.+|..+...-... ...+|.|+.
T Consensus 6 ITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v~h 84 (357)
T d1db3a_ 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYGDLSDTSNLTRILREVQPDEVYN 84 (357)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCCSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh-cCCCeEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 4457799999987765 3346899999843 333333322211 124689999998764321100 024689987
Q ss_pred CCCCCCccccCcccCccCCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHHhCC-CC-CcEEEE-EcCCCC
Q 019692 216 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-LNKLSAFQKKALRHALSF-PG-VERVVY-STCSIH 281 (337)
Q Consensus 216 DpPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~l~~~Q~~lL~~A~~~-~~-~G~lvY-sTCS~~ 281 (337)
=+-+++.+.-- .+++. ...-..-...+|+.+.+. ++ ..++|| |||++.
T Consensus 85 ~aa~~~~~~~~------------------~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vY 136 (357)
T d1db3a_ 85 LGAMSHVAVSF------------------ESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELY 136 (357)
T ss_dssp CCCCCTTTTTT------------------SCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGG
T ss_pred eecccccchhh------------------hCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhh
Confidence 55544433210 12332 333455567788887664 22 356777 777654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=0.14 Score=44.67 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=64.7
Q ss_pred eEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--CCCccEEEEC
Q 019692 140 KVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--YSEVRAILLD 216 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~~~fD~IlvD 216 (337)
+|| +.-|+|..+.+++..+ ..+..|+++|.....-+......+.....+++++.+|..+...-... ..++|.|+-=
T Consensus 2 KiL-ItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 2 RVL-VTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred EEE-EECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 455 4458999999988765 34468999986322211122222333335789999998775421100 1258999864
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMER-LNKLSAFQKKALRHALSFPGVERVVYSTC 278 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~l~~~Q~~lL~~A~~~~~~G~lvYsTC 278 (337)
+--++.+... ..++. +..-..-...+|+.+.+. +...+||+++
T Consensus 81 Aa~~~~~~~~------------------~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss 124 (338)
T d1udca_ 81 AGLKAVGESV------------------QKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSS 124 (338)
T ss_dssp CSCCCHHHHH------------------HCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEE
T ss_pred CCccchhhHH------------------hCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCc
Confidence 3322111100 01222 333455566788877654 3356666644
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=85.51 E-value=2 Score=32.86 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=54.0
Q ss_pred eEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEECCC
Q 019692 140 KVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 218 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvDpP 218 (337)
+|.=+|+ |..+..+|..+ ..+.+|+++|.+++.++.+++ .|+-+ ....+... ....|.|++-.|
T Consensus 2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~--~~~~~~~~-------~~~~DiIilavp 66 (165)
T d2f1ka2 2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD--EAGQDLSL-------LQTAKIIFLCTP 66 (165)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS--EEESCGGG-------GTTCSEEEECSC
T ss_pred EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc--eeeeeccc-------ccccccccccCc
Confidence 3444555 54444455444 234689999999988776543 44322 11122211 245799998666
Q ss_pred CCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcc
Q 019692 219 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 283 (337)
Q Consensus 219 CSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ 283 (337)
-+ .+ .++++.....++++.+|-.+.|....
T Consensus 67 ~~----------------------------~~-------~~vl~~l~~~l~~~~iv~~~~s~~~~ 96 (165)
T d2f1ka2 67 IQ----------------------------LI-------LPTLEKLIPHLSPTAIVTDVASVKTA 96 (165)
T ss_dssp HH----------------------------HH-------HHHHHHHGGGSCTTCEEEECCSCCHH
T ss_pred Hh----------------------------hh-------hhhhhhhhhhcccccceeeccccchH
Confidence 11 11 35666666677778888777776433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.35 E-value=1.6 Score=33.46 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=57.8
Q ss_pred eEEeecCCchhHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEC
Q 019692 140 KVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 216 (337)
Q Consensus 140 ~VLDl~aG~G~kt~~la~~~~---~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~IlvD 216 (337)
+|+=+||| ..+..+|..+. ...+|+++|.+++.++.+++. |.-. ....+..... ....|+|++-
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~--~~~~~~~~~~-----~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--EGTTSIAKVE-----DFSPDFVMLS 69 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--EEESCGGGGG-----GTCCSEEEEC
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch--hhhhhhhhhh-----cccccccccc
Confidence 35556665 44444454432 234899999999988776643 4322 1111211111 1347899887
Q ss_pred CCCCCccccCcccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCcccCHHHHHHHh
Q 019692 217 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 293 (337)
Q Consensus 217 pPCSg~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~A~~~~~~G~lvYsTCS~~~~ENe~vv~~~l 293 (337)
.| ++. -.++|.....+++.+.+|..+||.-..--+. ++..+
T Consensus 70 ~p----------------------------~~~-------~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~-~~~~~ 110 (171)
T d2g5ca2 70 SP----------------------------VRT-------FREIAKKLSYILSEDATVTDQGSVKGKLVYD-LENIL 110 (171)
T ss_dssp SC----------------------------HHH-------HHHHHHHHHHHSCTTCEEEECCSCCTHHHHH-HHHHH
T ss_pred CC----------------------------chh-------hhhhhhhhhccccccccccccccccHHHHHH-HHHhh
Confidence 76 111 1234444444556689999999876544333 33344
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=85.21 E-value=3.8 Score=33.53 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred CCCCCeEEeecCCchhHHHHHHHHcCCCC--EEEEEeC---CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------C
Q 019692 135 PKPGWKVLDACSAPGNKTVHLAALMKGKG--KIVACEL---NKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------K 203 (337)
Q Consensus 135 ~~~g~~VLDl~aG~G~kt~~la~~~~~~g--~V~avD~---~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~------~ 203 (337)
.+|+.+||=.| |+||.+..++..+-..| .|+-+-. +.+..+.+.+.++..|. ++.++..|..+... .
T Consensus 6 ~~p~gt~lVTG-gs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~-~v~~~~~Dv~d~~~~~~~~~~ 83 (259)
T d2fr1a1 6 WKPTGTVLVTG-GTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGA-RTTVAACDVTDRESVRELLGG 83 (259)
T ss_dssp CCCCSEEEEET-TTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHT
T ss_pred cCCcCEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccc-cccccccccchHHHHHHhhcc
Confidence 46788888777 56777877777653222 5665543 33445555666666664 58899999876321 1
Q ss_pred CCCCCCccEEEECCCCCC
Q 019692 204 DPAYSEVRAILLDPSCSG 221 (337)
Q Consensus 204 ~~~~~~fD~IlvDpPCSg 221 (337)
.......|.|+..+.-..
T Consensus 84 i~~~~~i~~vv~~ag~~~ 101 (259)
T d2fr1a1 84 IGDDVPLSAVFHAAATLD 101 (259)
T ss_dssp SCTTSCEEEEEECCCCCC
T ss_pred cccccccccccccccccc
Confidence 111246888888765433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.08 E-value=0.48 Score=35.37 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCchhHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEE
Q 019692 146 SAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILL 215 (337)
Q Consensus 146 aG~G~kt~~la~~~~~~-g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Ilv 215 (337)
||.|..+..+++.+... ..|+.+|.|+++++.+++. .+ +.++.+|+.+...- .......|.+++
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~---~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID---ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS---SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh---hhhccCcccchhhhhhcChhhhhhhcc
Confidence 35577788888766433 5899999999999877653 23 56888998764311 011356788876
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=83.06 E-value=1.1 Score=37.40 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|.++|=.| |++|.+..++..+ ....+|+.+|.+++.++.+.+.+.. -.++.++..|..+.... ...++
T Consensus 5 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777666 4555777776654 3457999999999998887776643 23588999998764311 11246
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.++.++.
T Consensus 82 ~iDiLVnnAg 91 (251)
T d1zk4a1 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CceEEEeccc
Confidence 7898887653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=83.00 E-value=1.7 Score=33.90 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHhCCCCCCeEEeecCCc--hhHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019692 131 AALAPKPGWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 190 (337)
Q Consensus 131 ~~l~~~~g~~VLDl~aG~--G~kt~~la~~~~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v 190 (337)
...++++|++||=.+++. |..+.++|+.. ..+|+++..++++.+.+ +.+|.+.+
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~----~~~Ga~~v 78 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYL----KQIGFDAA 78 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHH----HHTTCSEE
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHH----Hhhhhhhh
Confidence 456789999999777654 34566777765 36999999998886554 45676644
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.00 E-value=1.3 Score=36.92 Aligned_cols=82 Identities=7% Similarity=0.083 Sum_probs=54.3
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 207 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~-~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 207 (337)
.|..+|=.|+ ++|.+..+|..+ ..+.+|+.++.+ ...++.+.+.+...+-.++.++..|..+.... ...+
T Consensus 3 ~gK~alITGa-s~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAVVTGS-TSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3667775554 456777777654 334689999986 67788877776544223588899998874311 1124
Q ss_pred CCccEEEECCCC
Q 019692 208 SEVRAILLDPSC 219 (337)
Q Consensus 208 ~~fD~IlvDpPC 219 (337)
++.|.++.++--
T Consensus 82 G~iDiLVnnAG~ 93 (260)
T d1x1ta1 82 GRIDILVNNAGI 93 (260)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCcEEEeeccc
Confidence 678999988753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=4.1 Score=33.47 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 208 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 208 (337)
.|..+|=.|++.| .+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|. ++..+..|..+.... ...++
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 3777887776666 555555543 3356999999999999999999988774 588888998875421 01246
Q ss_pred CccEEEECCC
Q 019692 209 EVRAILLDPS 218 (337)
Q Consensus 209 ~fD~IlvDpP 218 (337)
..|.++.++.
T Consensus 84 ~idilinnag 93 (244)
T d1yb1a_ 84 DVSILVNNAG 93 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCceeEeecc
Confidence 7899887554
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.08 E-value=3.1 Score=34.11 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~---~~~~~~~fD~ 212 (337)
.|.++|=.|++ +|.+..++..+ ..+.+|+.+|.+++.++.+.+.+ .++..+..|..+... ....+++.|.
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 47888877765 45777776654 34569999999998877665443 346777888876431 1123578999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
++.++-
T Consensus 78 lVnnAg 83 (242)
T d1cyda_ 78 LVNNAA 83 (242)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=3.1 Score=34.13 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=51.7
Q ss_pred CCCeEEeecCCchhHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccE
Q 019692 137 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRA 212 (337)
Q Consensus 137 ~g~~VLDl~aG~G~kt~~la~~~-~~~g~V~avD~~~~~l~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~ 212 (337)
.|.++|=.|++ ++.+..+|..+ ..+.+|+.+|.+++.++.+.+.+ .++..+..|..+.... ...++++|.
T Consensus 6 ~GK~~lITGas-~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 47888877766 45677777665 33469999999998887665543 3467788888654311 123578999
Q ss_pred EEECCC
Q 019692 213 ILLDPS 218 (337)
Q Consensus 213 IlvDpP 218 (337)
++.++.
T Consensus 80 lVnnAg 85 (244)
T d1pr9a_ 80 LVNNAA 85 (244)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 887653
|