Citrus Sinensis ID: 021397

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHccccHHHHHHccccccEEEEcccccccHHHHHHHccccEEEEcccccEEEccccccccccHHHccccEEEEcHHHHHcccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHccccHHHHHcccccccEEEEcccHHHHHHHHHHHccccccccccccccEEccccccccccHHHHccEEEEEcHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHccccccccccEcccccHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccEcccHHHHHccccccHHHcccccEEEEEccccccHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlctldgeisklplpEAFLDFLKengldpsvysaadstpryirlktgneaDLEEIEAELKCKLEKVVWLsgfyslppdikiATSMAYKQGKIYGIDAASGAAVSALNISagdhvldlcaapgaKLCMILDIigdsgsvtgvDVARHRLAACRTLLQKyalgdrcrlfvadgttfslaplrllldpgscnsvlqekddtfrewtsripwkERKRAVKARENAASKAIVRSEHPELIFYGrrsgivgltkEEIYQSVCnsevsssgydkvlvdaecthdgsikhIQKFEnwgwttlqrrvldpertdsvtnlqvt
Flexible Loop (DISEMBL)
mlctldgeisklplPEAFLDFLKENGLDPsvysaadstpryiRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNsvlqekddtfrewtsripwkerkravKAREnaaskaivrsehpelifyGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGsikhiqkfenwgWTTLQrrvldpertdsvtnlqvt
Low Complexity Region (SEG)
MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT
Disordered region (IsUnstruct)
********ISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWK***************AIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVL**************
Disordered Region (DISOPRED)
***********LPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDT******************************SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVT*LQV*
Disordered Region (DISEMBL)
MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKE************SKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPER**********
Disordered Region (DISPRO)
*LC*LDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
A4WF97	428	Ribosomal RNA small subun	yes	no	0.325	0.238	0.336	6e-07
Q8K4F6	465	Putative methyltransferas	yes	no	0.626	0.421	0.248	5e-06
A1JRZ3	429	Ribosomal RNA small subun	yes	no	0.552	0.403	0.270	1e-05
Q9I7A9	434	Ribosomal RNA small subun	yes	no	0.348	0.251	0.333	1e-05
A7N0K6	478	Ribosomal RNA small subun	yes	no	0.603	0.395	0.267	5e-05
P94464	447	Ribosomal RNA small subun	yes	no	0.217	0.152	0.338	7e-05
Q9V106	311	tRNA (cytosine(49)-C(5))-	no	no	0.495	0.498	0.291	8e-05
A7MKH5	480	Ribosomal RNA small subun	yes	no	0.642	0.418	0.28	8e-05
Q88B41	448	Ribosomal RNA small subun	yes	no	0.335	0.234	0.322	0.0001
B7LRQ5	429	Ribosomal RNA small subun	yes	no	0.380	0.277	0.294	0.0002

>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp. (strain 638) GN=rsmB PE=3 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 69  LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
           ++GF   + P  I++A+         ++QG +   DA++   ++ L    GDH+LDLCAA
Sbjct: 196 MNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQDASAQGCMTYLEPQNGDHILDLCAA 255

Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
           PG K   IL+ I    SV  VDV   RL+     L++  LG +  +   DG T
Sbjct: 256 PGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKR--LGMKAEVKQGDGRT 305

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
Enterobacter sp. (strain 638) (taxid: 399742)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 6

>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 33/229 (14%)

Query: 20  DFLKENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAEL 59
           D L+E+      Y      PR++R+ T                    G  + LE++ A  
Sbjct: 120 DLLQESSRPGQAYQ----VPRFVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALK 175

Query: 60  KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
                    L      P    +     Y+ G +   D AS      L+   G HV+D CA
Sbjct: 176 GQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACA 235

Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
           APG K   I  ++ + G +   D    RLAA  TL+ +  +   C L   D  T S +  
Sbjct: 236 APGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQ 294

Query: 180 R------LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
           R      +LLDP    S +  +     E     P KER +A+   +  A
Sbjct: 295 RYSQVQYILLDPSCSGSGMLSRQ--LEEHGEGTPSKERLQALAGFQQRA 341

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmB PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 38/211 (18%)

Query: 11  KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
           KL  P+ +   L  N   P         P ++R+   + + +E +E   +  +E +    
Sbjct: 154 KLAYPDQWQQILDANNQKP---------PMWLRVNRLHHSRIEYLELLKQANIEALP--H 202

Query: 71  GFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
            FY  P  +++ T  A      ++ G +   DA++   V  L+   G+ +LDLCAAPG K
Sbjct: 203 DFY--PDAVRLITPCAVSDLPGFELGWVTVQDASAQGCVDLLDPQDGEQILDLCAAPGGK 260

Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FS 175
              IL+       V  VD+   RL+  +  LQ+  L    R  V DG T         F 
Sbjct: 261 TTHILE-AAPKVHVLAVDIDEQRLSRVKENLQRLRLHADVR--VGDGRTPDEWCGDQQFD 317

Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
               R+LLD P S   V++   D   +W  R
Sbjct: 318 ----RILLDAPCSATGVIRRHPDI--KWLRR 342

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rsmB PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 87  YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
           + +G++   D A+  A   L  + G  VLD C APG K C +L+   +   V  VD+   
Sbjct: 220 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279

Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
           RL   R  LQ+  LG +  L  AD    G  +   P  R+LLD P S   V++   D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|A7N0K6|RSMF_VIBHB Ribosomal RNA small subunit methyltransferase F OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rsmF PE=3 SV=2

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)

Query: 14  LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
           +PEAFL+ ++        ++  + S      + IR   LK   EA LE  EA+   KL  
Sbjct: 7   IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65

Query: 66  VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
           V W +  + +  D   + +  +  +  G  Y  +A+S   VSAL  N  + D VLD  AA
Sbjct: 66  VPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125

Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
           PG+K   I  ++ + G +   + A  R+      +++  + +   L   DG  F    P 
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184

Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
           +    LLD P S    +++ +D  + WT 
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 8

>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 81  IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
           IA +  ++ G++   D +S     AL+  + + VLD CAAPG K   I +++ + GSVT 
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTS 281

Query: 141 VDVARHRL 148
           +D+ +H++
Sbjct: 282 LDLHKHKV 289

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%)

Query: 42  IRLKTGNEADLEEIEA--ELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
           IR+ T  + +L+EI+A  E K +LE + W  G  FY    D+     + Y  G I   +A
Sbjct: 39  IRINTL-KGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEA 97

Query: 98  ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------LAA 150
           +S      L+    + +LD+ AAPG+K   +   + + G +   D  R R       L  
Sbjct: 98  SSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTR 157

Query: 151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV-LQEKDDTF-REWT 203
              L+ K  + D    F     TF     R+LLD   C+SV +  K+  F R W+
Sbjct: 158 AGVLIAKVTVKDGA-YFARYENTFD----RVLLD-APCSSVGMIRKNFKFARTWS 206

Catalyzes AdoMet-dependent formation of m5C in tRNA. In the presence of protein archease, specifically methylates the cytosine at position 49 (m5C49) of tRNA. In the absence of archease, catalyzes the formation of m5C at many locations in tRNAs or rRNAs.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 24/225 (10%)

Query: 14  LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
           LPEAFLD ++E    GL    + AA   P  R IR   LK   +A L ++ A    +L  
Sbjct: 9   LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVDAFLAQV-APYGWQLTP 67

Query: 66  VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCA 119
           V W   GF+    D   + + ++  +  G+ Y  +A+S   V+AL         V+D+ A
Sbjct: 68  VPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAA 127

Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
           APG+K   I  ++ + G +   + +  R+      + +  + +   L   DG  F  A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHN-VGLTHFDGRVFGAALP 186

Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
            +   +LLD P S   V+++  D  R W+   P  +++ A   RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSDQEIAATQRE 228

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 8

>sp|Q88B41|RSMB_PSESM Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rsmB PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 87  YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
           + +G I   D A+  A   L ++ G  VLD C APG K C +L++      V  VD+   
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279

Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
           RL   R  L++  LG    L  A         DG  F     R+LLD P S   V++   
Sbjct: 280 RLVRVRENLER--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333

Query: 197 D 197
           D
Sbjct: 334 D 334

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rsmB PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)

Query: 86  AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
            +++G +   DA++   ++ L    G+H+LDLCAAPG K   IL++  ++  V  VD+  
Sbjct: 222 GFEEGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280

Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
            RL+     L++  LG +  +   DG   S         R+LLD P S   V++   D  
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336

Query: 200 REWTSRIPWKERKRAV 215
                 I W  R R +
Sbjct: 337 ------IKWLRRDRDI 346

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) (taxid: 585054)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255577546	392	conserved hypothetical protein [Ricinus	0.974	0.778	0.708	1e-128
359476823	395	PREDICTED: uncharacterized protein LOC10	0.971	0.769	0.709	1e-124
363807612	392	uncharacterized protein LOC100788419 [Gl	0.961	0.767	0.687	1e-122
224071335	394	predicted protein [Populus trichocarpa]	0.984	0.781	0.740	1e-121
449434146	401	PREDICTED: uncharacterized protein LOC10	0.974	0.760	0.685	1e-121
449491338	400	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.971	0.76	0.688	1e-120
388500686	389	unknown [Medicago truncatula]	0.942	0.758	0.673	1e-117
357518003	389	Ribosomal RNA small subunit methyltransf	0.942	0.758	0.673	1e-117
388520659	311	unknown [Medicago truncatula]	0.939	0.945	0.667	1e-114
297735000	369	unnamed protein product [Vitis vinifera]	0.888	0.753	0.676	1e-114

>gi|255577546|ref|XP_002529651.1| conserved hypothetical protein [Ricinus communis] gi|223530877|gb|EEF32738.1| conserved hypothetical protein [Ricinus communis]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 261/305 (85%)

Query: 8   EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
           EI+KLPLPEAFLDFL+ NGLDPS+Y+A D+TPRYIRLK G+EA++EEI+ E+ C LE+V 
Sbjct: 3   EIAKLPLPEAFLDFLEANGLDPSIYTAIDTTPRYIRLKPGSEAEIEEIKTEINCNLERVN 62

Query: 68  WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
           WL+ FYSLP  + IA S AY++GKIYGIDAASGAAV ALNIS GDHVLDLCAAPGAKLCM
Sbjct: 63  WLASFYSLPHHVHIANSRAYREGKIYGIDAASGAAVLALNISVGDHVLDLCAAPGAKLCM 122

Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
           I +++GDSGSVTGVD++R RLAACRT+LQKY LGDRCRLFVADGT FSL P+R   +  S
Sbjct: 123 ISELLGDSGSVTGVDISRDRLAACRTMLQKYNLGDRCRLFVADGTAFSLLPVREHSNLRS 182

Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
           C S  QEK+DT+R+WTSR P+KERKRA KARE AAS  +  S++PELIFYG+ SG++GL+
Sbjct: 183 CESASQEKEDTYRKWTSRRPYKERKRASKARERAASALVAESDYPELIFYGQDSGVIGLS 242

Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
           K E+YQ VC +E+S+ GYDKVLVDAECTHDGSI+HIQKFE+WGW TL +RVL  ER+DS+
Sbjct: 243 KSELYQIVCGNELSNCGYDKVLVDAECTHDGSIRHIQKFEHWGWETLYQRVLQAERSDSL 302

Query: 308 TNLQV 312
           T+LQ+
Sbjct: 303 TSLQL 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476823|ref|XP_003631893.1| PREDICTED: uncharacterized protein LOC100267747 [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 251/306 (82%), Gaps = 2/306 (0%)

Query: 8   EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGN--EADLEEIEAELKCKLEK 65
           E S + LPEAFLDFLKENG+DPS+Y+ ADSTPRYIRLK G+  EA ++++EAE K KLEK
Sbjct: 3   EASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEK 62

Query: 66  VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
           V WL  FYSLPP I IA SMAYK+GKIYGIDAASGAAVSALN+S GDHVLDLCAAPGAKL
Sbjct: 63  VGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKL 122

Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP 185
           CM LD+IG+SGSVTGVDVARHRLAACRT++QKYALGDRCRLFVADGTTFSL P+    D 
Sbjct: 123 CMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDS 182

Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG 245
            S     + K D F+EWTS+ PWKERK A KARE   S+ +   + PELIFYG  SG++G
Sbjct: 183 KSGEFASKGKVDVFKEWTSKRPWKERKNAKKAREGIGSQLVPGIQDPELIFYGWHSGVIG 242

Query: 246 LTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
           L++ E+Y+  C+SEV   GYDKVLVDAECTHDGSI+HIQKF++WGW TL+RRVLD ERTD
Sbjct: 243 LSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTD 302

Query: 306 SVTNLQ 311
           S+T LQ
Sbjct: 303 SLTVLQ 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807612|ref|NP_001242667.1| uncharacterized protein LOC100788419 [Glycine max] gi|255642235|gb|ACU21382.1| unknown [Glycine max]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/304 (68%), Positives = 253/304 (83%), Gaps = 3/304 (0%)

Query: 10  SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
           +K PLP+AFL FL+ NGLDPS+Y+A DSTPRYIRLK G E+ +EE+EAE+KCKLEK+ WL
Sbjct: 7   AKAPLPDAFLQFLETNGLDPSIYTAIDSTPRYIRLKPGFESCIEEVEAEVKCKLEKLEWL 66

Query: 70  SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            GFYSLPP ++IA S AY++GKIYGIDAASGAAV ALNIS GDHVLDLCAAPGAKLCMIL
Sbjct: 67  PGFYSLPPHVQIAGSRAYREGKIYGIDAASGAAVMALNISPGDHVLDLCAAPGAKLCMIL 126

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189
           D++GDSGSV GVDVARHRLAACRT+LQKY +G RCRLFVADGT FS+ P     D  SC 
Sbjct: 127 DLLGDSGSVAGVDVARHRLAACRTMLQKYMIGGRCRLFVADGTAFSVIPSGFCSDCKSCE 186

Query: 190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKE 249
           S L+ + D F+EWTSR PWKERK   KA ++  ++ + RS+ PELI+YG+ SG+VGLTK 
Sbjct: 187 SGLEGRVDVFKEWTSRRPWKERK---KANKSGTAQLVSRSQPPELIYYGQHSGVVGLTKG 243

Query: 250 EIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTN 309
           E+Y+++ ++E+++ GYDKVLVDAECTHDGS+KHIQKFE+WGW TLQRRVLD ERTD +  
Sbjct: 244 ELYRTLSDNEIANHGYDKVLVDAECTHDGSVKHIQKFEDWGWGTLQRRVLDAERTDDLHT 303

Query: 310 LQVT 313
           LQ+ 
Sbjct: 304 LQLN 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071335|ref|XP_002303410.1| predicted protein [Populus trichocarpa] gi|222840842|gb|EEE78389.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/308 (74%), Positives = 268/308 (87%)

Query: 5   LDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLE 64
           ++ E SKLPLP+AFLDFL+ NG+DP +Y+A +STPRYIRLK G+EA LEEIEAE+KC+L+
Sbjct: 1   MEEETSKLPLPDAFLDFLQTNGIDPLIYTAIESTPRYIRLKPGSEAYLEEIEAEIKCRLQ 60

Query: 65  KVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
           K+ WL GFYSLPP I+IA S  YK+GKIYGIDAASGAAV AL+IS GDHVLDLC APGAK
Sbjct: 61  KLNWLPGFYSLPPHIQIANSKPYKEGKIYGIDAASGAAVLALDISVGDHVLDLCCAPGAK 120

Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184
           LCMI D++GDSGSVTGVDVARHRLAACRT+LQKY LGD CRLFVADGTTFSL P+R  LD
Sbjct: 121 LCMISDLLGDSGSVTGVDVARHRLAACRTMLQKYVLGDACRLFVADGTTFSLMPVRDHLD 180

Query: 185 PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIV 244
             SC   L+EK DTFREWTSR PWKERKRA +ARENAAS+ +  ++HPELIFYG+ SG+V
Sbjct: 181 SISCEFALEEKKDTFREWTSRRPWKERKRAARARENAASRLVSETDHPELIFYGKASGVV 240

Query: 245 GLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERT 304
           GL+K+E+YQ+V +SEVSSSGYDKVLVDAECTHDGSI+HIQKFE+WGW TL  RVL+ ER+
Sbjct: 241 GLSKDELYQTVSSSEVSSSGYDKVLVDAECTHDGSIRHIQKFEHWGWETLNGRVLNAERS 300

Query: 305 DSVTNLQV 312
           D++T LQ+
Sbjct: 301 DNLTTLQL 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434146|ref|XP_004134857.1| PREDICTED: uncharacterized protein LOC101221513 [Cucumis sativus]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/305 (68%), Positives = 249/305 (81%)

Query: 8   EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
           E S  PLP AFLDFLKENGLDPS+YSA DSTPRY+RLK G +AD+EEIE E+KCKLEKV 
Sbjct: 3   EPSTSPLPAAFLDFLKENGLDPSIYSATDSTPRYVRLKPGYKADVEEIEDEIKCKLEKVS 62

Query: 68  WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
           WL GFYSLPPD++IA S AYK GKIYGIDAASGAAV+AL+I  G+HVLDLCAAPGAKLCM
Sbjct: 63  WLPGFYSLPPDVQIAGSHAYKTGKIYGIDAASGAAVTALDILPGNHVLDLCAAPGAKLCM 122

Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
           I+D++   GSVTGVDV++HRLAACRT+LQKYALGD CRLFVADG TFSL P+ +  +   
Sbjct: 123 IVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSLTPVNVTSESKF 182

Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
             S L++  D  REWTSR  WKERK+  KA++  +++ +   + PELIFYG +SG+VG T
Sbjct: 183 GESTLEDSVDRLREWTSRKSWKERKKTAKAKQTVSAELVQSGQDPELIFYGLKSGVVGFT 242

Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
           K EIY+S   +E+ S GYD+VLVDAECTHDGSIKHIQKFE+WGWT+ QRRVLD ERTD++
Sbjct: 243 KSEIYRSPPENELLSYGYDRVLVDAECTHDGSIKHIQKFESWGWTSFQRRVLDAERTDNL 302

Query: 308 TNLQV 312
           T LQ+
Sbjct: 303 TVLQL 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491338|ref|XP_004158865.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221513 [Cucumis sativus]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 249/305 (81%), Gaps = 1/305 (0%)

Query: 8   EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
           E S  PLP AFLDFLKENGLDPS+YSA DSTPRY+RLK G +AD+EEIE E+KCKLEKV 
Sbjct: 3   EPSTSPLPAAFLDFLKENGLDPSIYSATDSTPRYVRLKPGYKADVEEIEDEIKCKLEKVS 62

Query: 68  WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
           WL GFYSLPPD++IA S AYK GKIYGIDAASGAAV+AL+I  G+HVLDLCAAPGAKLCM
Sbjct: 63  WLPGFYSLPPDVQIAGSHAYKTGKIYGIDAASGAAVTALDILPGNHVLDLCAAPGAKLCM 122

Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
           I+D++   GSVTGVDV++HRLAACRT+LQKYALGD CRLFVADG TFSL P+ +  +   
Sbjct: 123 IVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSLTPVNVTSESKF 182

Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
             S L++  D  REWTSR  WKERK A KA++  +++ +   + PELIFYG +SG+VG T
Sbjct: 183 GESTLEDSVDRLREWTSRKSWKERKTA-KAKQTVSAELVQSGQDPELIFYGLKSGVVGFT 241

Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
           K EIY+S   +E+ S GYD+VLVDAECTHDGSIKHIQKFE+WGWT+ QRRVLD ERTD++
Sbjct: 242 KSEIYRSPPENELLSYGYDRVLVDAECTHDGSIKHIQKFESWGWTSFQRRVLDAERTDNL 301

Query: 308 TNLQV 312
           T LQ+
Sbjct: 302 TVLQL 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500686|gb|AFK38409.1| unknown [Medicago truncatula]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/300 (67%), Positives = 244/300 (81%), Gaps = 5/300 (1%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
           LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E  +EE E+E+KCK +K+ WL GFY
Sbjct: 10  LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69

Query: 74  SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
           +LPP+I+IA++ AY++GKIYGIDA+SGAAV AL I  GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70  TLPPNIQIASTKAYQEGKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129

Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
           DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL    D  SC S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD--SCESRLE 187

Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
           E+ D F+EWTSR PWKERKR  K       + + +S  PELI+YG  SG++GLTK E+Y+
Sbjct: 188 ERMDVFKEWTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 244

Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT 313
           +   +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD +  LQ+ 
Sbjct: 245 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQLN 304

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518003|ref|XP_003629290.1| Ribosomal RNA small subunit methyltransferase, putative [Medicago truncatula] gi|355523312|gb|AET03766.1| Ribosomal RNA small subunit methyltransferase, putative [Medicago truncatula]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/300 (67%), Positives = 244/300 (81%), Gaps = 5/300 (1%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
           LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E  +EE E+E+KCK +K+ WL GFY
Sbjct: 10  LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69

Query: 74  SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
           +LPP+I+IA++ AY++GKIYGIDA+SGAAV AL I  GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70  TLPPNIQIASTKAYQEGKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129

Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
           DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL    D  SC S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD--SCESRLE 187

Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
           E+ D F+EWTSR PWKERKR  K       + + +S  PELI+YG  SG++GLTK E+Y+
Sbjct: 188 ERMDVFKEWTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 244

Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT 313
           +   +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD +  LQ+ 
Sbjct: 245 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQLN 304

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520659|gb|AFK48391.1| unknown [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/298 (66%), Positives = 241/298 (80%), Gaps = 4/298 (1%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
           LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E  +EE E+E+KCK +K+ WL GFY
Sbjct: 10  LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69

Query: 74  SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
           +LPP+I+IA++ AY++G+IYGIDA+SGAAV AL I  GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70  TLPPNIQIASTKAYQEGRIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129

Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
           DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL    D  S  S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD-SSGESRLE 188

Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
           E+ D F+E TSR PWKERKR  K       + + +S  PELI+YG  SG++GLTK E+Y+
Sbjct: 189 ERMDVFKERTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 245

Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQ 311
           +   +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD +  LQ
Sbjct: 246 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQ 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735000|emb|CBI17362.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/306 (67%), Positives = 237/306 (77%), Gaps = 28/306 (9%)

Query: 8   EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGN--EADLEEIEAELKCKLEK 65
           E S + LPEAFLDFLKENG+DPS+Y+ ADSTPRYIRLK G+  EA ++++EAE K KLEK
Sbjct: 3   EASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEK 62

Query: 66  VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
           V WL  FYSLPP I IA SMAYK+GKIYGIDAASGAAVSALN+S GDHVLDLCAAPGAKL
Sbjct: 63  VGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKL 122

Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP 185
           CM LD+IG+SGSVTGVDVARHRLAACRT++QKYALGDRCRLFVADGTTFSL P+    D 
Sbjct: 123 CMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDS 182

Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG 245
            S   V     D F+EWTS+ PWKERK A KARE                       ++G
Sbjct: 183 KSGGKV-----DVFKEWTSKRPWKERKNAKKAREGI---------------------VIG 216

Query: 246 LTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
           L++ E+Y+  C+SEV   GYDKVLVDAECTHDGSI+HIQKF++WGW TL+RRVLD ERTD
Sbjct: 217 LSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTD 276

Query: 306 SVTNLQ 311
           S+T LQ
Sbjct: 277 SLTVLQ 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2156902	395	AT5G66180 [Arabidopsis thalian	0.942	0.746	0.651	2.5e-104
UNIPROTKB|Q5HVD5	279	CJE0739 "NOL1/NOP2/sun family	0.661	0.741	0.259	1.1e-05
TIGR_CMR|CJE_0739	279	CJE_0739 "NOL1/NOP2/sun family	0.661	0.741	0.259	1.1e-05
MGI|MGI:2140844	465	Nsun5 "NOL1/NOP2/Sun domain fa	0.619	0.417	0.286	1.5e-05
UNIPROTKB|Q749J3	319	GSU2749 "NOL1/NOP2/Sun (TRNA a	0.664	0.652	0.256	2.7e-05
TIGR_CMR|GSU_2749	319	GSU_2749 "NOL1/NOP2/sun family	0.664	0.652	0.256	2.7e-05
UNIPROTKB|Q9V106	311	PYRAB06230 "tRNA (cytosine(49)	0.539	0.543	0.286	4.3e-05
UNIPROTKB|Q96CB9	384	NSUN4 "5-methylcytosine rRNA m	0.207	0.169	0.409	7.2e-05
TIGR_CMR|CPS_0018	440	CPS_0018 "sun protein" [Colwel	0.456	0.325	0.305	0.00014
UNIPROTKB|Q0V8R7	384	NSUN4 "5-methylcytosine rRNA m	0.220	0.179	0.385	0.00021

TAIR|locus:2156902 AT5G66180 [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 198/304 (65%), Positives = 242/304 (79%)

Query:     8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
             E SKL LPE+FL FL+ NGLDPS+Y+  DS PRY+RLK G E   EEIE+E+ CKLEKV 
Sbjct:     3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62

Query:    68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
             WL GFYS+PPD+ IA + AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct:    63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCM 122

Query:   128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
             +LD++G  G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P R L  P  
Sbjct:   123 MLDLLGQKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTRNL--P-- 178

Query:   188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
             C S + + +DTF++WTSR P+KERK+  KAR+N+    + ++   E+IFYG+ SG++GL 
Sbjct:   179 CESCVDDHEDTFKQWTSRRPYKERKQEAKARKNSV---LPQNGQAEIIFYGQGSGVIGLK 235

Query:   248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
             K E+Y+S+  ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD  
Sbjct:   236 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 293

Query:   308 TNLQ 311
             TNL+
Sbjct:   294 TNLK 297

GO:0005737 "cytoplasm" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|Q5HVD5 CJE0739 "NOL1/NOP2/sun family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 60/231 (25%), Positives = 106/231 (45%)

Query:    52 LEEIEAE-LKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
             +EE+E E LK KL K   ++ +  L    D  I +SM  + +   Y  + +S      L 
Sbjct:    25 IEELEKEFLKQKL-KFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLE 83

Query:   108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
             + AG  VLD+CAAPG K   + + + ++G +   +++R R    +  L+ Y  G   ++F
Sbjct:    84 VKAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 141

Query:   168 VADGTTF-SLAPLR---LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAAS 223
             + DG    +L PL+   +LLD   C++  +   D  + +      KE K   K ++    
Sbjct:   142 MKDGKNIGNLCPLKFDKILLD-APCSTFAKIGFDLEKSY------KEIKNIAKTQKKLLH 194

Query:   224 KAIVRSE-HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAE 273
              A+   +   EL++          TKEE  + + N+  S    + + +D E
Sbjct:   195 SALKALKIGGELVY-----STCTFTKEENEEVIENALKSEFKLELLDIDLE 240

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_0739 CJE_0739 "NOL1/NOP2/sun family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 60/231 (25%), Positives = 106/231 (45%)

Query:    52 LEEIEAE-LKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
             +EE+E E LK KL K   ++ +  L    D  I +SM  + +   Y  + +S      L 
Sbjct:    25 IEELEKEFLKQKL-KFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLE 83

Query:   108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
             + AG  VLD+CAAPG K   + + + ++G +   +++R R    +  L+ Y  G   ++F
Sbjct:    84 VKAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 141

Query:   168 VADGTTF-SLAPLR---LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAAS 223
             + DG    +L PL+   +LLD   C++  +   D  + +      KE K   K ++    
Sbjct:   142 MKDGKNIGNLCPLKFDKILLD-APCSTFAKIGFDLEKSY------KEIKNIAKTQKKLLH 194

Query:   224 KAIVRSE-HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAE 273
              A+   +   EL++          TKEE  + + N+  S    + + +D E
Sbjct:   195 SALKALKIGGELVY-----STCTFTKEENEEVIENALKSEFKLELLDIDLE 240

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2140844 Nsun5 "NOL1/NOP2/Sun domain family, member 5" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 61/213 (28%), Positives = 90/213 (42%)

Query:    21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPP 77
             F++ N L      A D   R      G  + LE++ A LK +   L+ +  L      P 
Sbjct:   137 FVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRA-LKGQHFLLDPL--LPELLVFPA 193

Query:    78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
                +     Y+ G +   D AS      L+   G HV+D CAAPG K   I  ++ + G 
Sbjct:   194 QTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGK 253

Query:   138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNS- 190
             +   D    RLAA  TL+ +  +   C L   D  T S +  R      +LLDP SC+  
Sbjct:   254 IFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQRYSQVQYILLDP-SCSGS 311

Query:   191 -VLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
              +L  + +   E T   P KER +A+   +  A
Sbjct:   312 GMLSRQLEEHGEGT---PSKERLQALAGFQQRA 341

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q749J3 GSU2749 "NOL1/NOP2/Sun (TRNA and rRNA cytosine-C5-methyltransferase) family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 59/230 (25%), Positives = 99/230 (43%)

Query:    13 PLPEAFLDFLKE----NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK-LEKVV 67
             PLP  FL  ++E    +  D  + S +   P  +RL    + D +E   EL+    + V 
Sbjct:     8 PLPVPFLALMEEVLPPDLRDACLASFSQEKPTSLRLNP-LKGDPDETRRELESAGFDPVP 66

Query:    68 --WLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
               W    +++  + +  +  S  +++G+IY    +S  A  AL    G+ VLDL AAPG 
Sbjct:    67 VSWYPLAFTVDGERRRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGG 126

Query:   124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APL--- 179
             K  M+  ++ + G ++ V+  R R    +  L         R ++ DG +     P    
Sbjct:   127 KTAMMAAMMENRGRLSAVEAVRGRFFRMKANLDHQG-ATMVRTYLTDGRSVGRKCPEMFD 185

Query:   180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
             R+LLD   C+S  +        W     W  RK    AR+    + ++RS
Sbjct:   186 RVLLD-APCSSEARFTRLNPESWAH---WSPRKVEEAARKQ---RGLIRS 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2749 GSU_2749 "NOL1/NOP2/sun family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 59/230 (25%), Positives = 99/230 (43%)

Query:    13 PLPEAFLDFLKE----NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK-LEKVV 67
             PLP  FL  ++E    +  D  + S +   P  +RL    + D +E   EL+    + V 
Sbjct:     8 PLPVPFLALMEEVLPPDLRDACLASFSQEKPTSLRLNP-LKGDPDETRRELESAGFDPVP 66

Query:    68 --WLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
               W    +++  + +  +  S  +++G+IY    +S  A  AL    G+ VLDL AAPG 
Sbjct:    67 VSWYPLAFTVDGERRRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGG 126

Query:   124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APL--- 179
             K  M+  ++ + G ++ V+  R R    +  L         R ++ DG +     P    
Sbjct:   127 KTAMMAAMMENRGRLSAVEAVRGRFFRMKANLDHQG-ATMVRTYLTDGRSVGRKCPEMFD 185

Query:   180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
             R+LLD   C+S  +        W     W  RK    AR+    + ++RS
Sbjct:   186 RVLLD-APCSSEARFTRLNPESWAH---WSPRKVEEAARKQ---RGLIRS 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9V106 PYRAB06230 "tRNA (cytosine(49)-C(5))-methyltransferase" [Pyrococcus abyssi GE5 (taxid:272844)]

 Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 55/192 (28%), Positives = 86/192 (44%)

Query:    42 IRLKTGNEADLEEIEA--ELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
             IR+ T  + +L+EI+A  E K +LE + W  G  FY    D+     + Y  G I   +A
Sbjct:    39 IRINT-LKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEA 97

Query:    98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------LAA 150
             +S      L+    + +LD+ AAPG+K   +   + + G +   D  R R       L  
Sbjct:    98 SSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTR 157

Query:   151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV-LQEKDDTF-REWT-SRIP 207
                L+ K  + D    F     TF     R+LLD   C+SV +  K+  F R W+  ++ 
Sbjct:   158 AGVLIAKVTVKDGA-YFARYENTFD----RVLLD-APCSSVGMIRKNFKFARTWSIGKVY 211

Query:   208 WKER--KRAVKA 217
             +  R  KR + A
Sbjct:   212 YHSRLQKRLILA 223

GO:0000049 "tRNA binding" evidence=IDA

GO:0016428 "tRNA (cytosine-5-)-methyltransferase activity" evidence=IDA

GO:0030488 "tRNA methylation" evidence=IDA

UNIPROTKB|Q96CB9 NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query:    93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
             Y +DAAS   V AL +  GD VLDLCAAPG K   +L   G   ++   D++  R+A  +
Sbjct:   156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQT-GCCRNLAANDLSPSRIARLQ 214

Query:   153 TLLQKY 158
              +L  Y
Sbjct:   215 KILHSY 220

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

TIGR_CMR|CPS_0018 CPS_0018 "sun protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
 Identities = 47/154 (30%), Positives = 67/154 (43%)

Query:    49 EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
             +A LEE E E+   +E     S    L   + +A    +  G +   D A+  A   L+ 
Sbjct:   193 QALLEEAEIEI-AHVEPN---SQAIELAKPLDVAKLPGFDDGWVSIQDGAAQQAARLLDC 248

Query:   109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
                D VLD CAAPG K C I++   D  S+T +D+   RL      L +  L     +  
Sbjct:   249 QPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVHENLDRLNL--TANVIT 306

Query:   169 ADGTT---FSLAPL-RLLLD-PGSCNSVLQEKDD 197
             AD  T   +S     R+LLD P S   V++   D
Sbjct:   307 ADAATQNWWSGEQFDRILLDAPCSGTGVIRRHPD 340

GO:0000154 "rRNA modification" evidence=ISS

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

UNIPROTKB|Q0V8R7 NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:    93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
             Y +DAAS   V AL +  GD VLDLCAAPG K   +L   G   ++   D++  R +  +
Sbjct:   156 YLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQT-GCCRNLAANDLSTSRTSRLQ 214

Query:   153 TLLQKYALGD 162
              +L  Y   D
Sbjct:   215 RVLHSYVPQD 224

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036768001 SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (395 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
COG0144	355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	6e-16
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	3e-11
TIGR00446	264	TIGR00446, nop2p, NOL1/NOP2/sun family putative RN	4e-08
TIGR00563	426	TIGR00563, rsmB, ribosomal RNA small subunit methy	6e-08
PRK14904	445	PRK14904, PRK14904, 16S rRNA methyltransferase B;	3e-06
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	7e-06
PRK10901	427	PRK10901, PRK10901, 16S rRNA methyltransferase B;	2e-05
pfam01189	277	pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	5e-05
PRK14901	434	PRK14901, PRK14901, 16S rRNA methyltransferase B;	4e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	5e-04
PRK14903	431	PRK14903, PRK14903, 16S rRNA methyltransferase B;	9e-04
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.002
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.004

>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 13/203 (6%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKT--GNEADLEEIEAELKCKLEKVVWLSG 71
           L E   D L E+  +    +     PR +R+ T   +  +L E   E     EK   L  
Sbjct: 58  LVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDE 117

Query: 72  FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
              +     I     + +G IY  D AS      L+   G+ VLDLCAAPG K   + ++
Sbjct: 118 VLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAEL 177

Query: 132 IGDSGS-VTGVDVARHRLAACRTLLQKYALGDRC-RLFVADGTTF-SLAPL-----RLLL 183
           + + G+ V  VDV+  RL   R  L++  LG R   +   D      L P      R+LL
Sbjct: 178 MENEGAIVVAVDVSPKRLKRLRENLKR--LGVRNVIVVNKDARRLAELLPGGEKFDRILL 235

Query: 184 D-PGSCNSVLQEKDDTFREWTSR 205
           D P S   V++   D     T  
Sbjct: 236 DAPCSGTGVIRRDPDVKWRRTPE 258

Length = 355

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score = 63.7 bits (156), Expect = 3e-11
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 81  IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
           IA +  +K G I   D +S     AL+   GD VLD CAAPG K   I +++ ++G V  
Sbjct: 221 IAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVA 280

Query: 141 VDVARHRL 148
           +D+  H+L
Sbjct: 281 LDIHEHKL 288

Length = 444

>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 19/176 (10%)

Query: 42  IRLKT--GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI-KIATSMAYKQGKIYGIDAA 98
           IR+ T   N  DL E        LE       F+ +      I ++  Y  G  Y  +A+
Sbjct: 1   IRVNTLKINVEDLLERLENRGVVLEPT-CEEYFFEVKESPFSIGSTPEYLFGYYYPQEAS 59

Query: 99  SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
           S     AL     + VLD+ AAPG K   I  ++ + G +   ++++ R  A  + +   
Sbjct: 60  SMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNIN-- 117

Query: 159 ALGDRC-----RLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDDTFREWTSR 205
               R       +  ADG  F    L    +LLD P S   V+++     R W+  
Sbjct: 118 ----RMGVLNTIVINADGRKFGAYLLKFDAILLDAPCSGEGVIRKDPSRKRNWSEE 169

[Protein synthesis, tRNA and rRNA base modification]. Length = 264

>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
           DA++    + L     + +LD CAAPG K   IL++      V  +D+  HRL      L
Sbjct: 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENL 282

Query: 156 QKYALGDRCRLFVADGTTFSLAPL-------RLLLD-PGSCNSVLQEKDDTFREWTSR 205
           ++  LG   +    DG     +         R+LLD P S   V++   D   +W  +
Sbjct: 283 KR--LGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDI--KWLRK 336

This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426

>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 46/164 (28%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 40  RYIRLKTGNEADLEEIEAE----LKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
           R  RLKT  E  L           K  L        F    P          K G +   
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFLSKDFSLFEP--------FLKLGLVSVQ 235

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
           +     A   LN   G  VLDLCAAPG K   + +++ + G +T VD    +L   R+  
Sbjct: 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA 295

Query: 156 QKYALG-DRCRLFVADGTTFS--LAPLRLLLD-PGSCNSVLQEK 195
              ALG         D  +FS    P  +LLD P +   VL  +
Sbjct: 296 S--ALGITIIETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRR 337

Length = 445

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
           GD VLD  A  GA L       G    V GV++     A  R  L    L  R R+ V D
Sbjct: 1   GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59

Query: 171 GTTFSLAP 178
                  P
Sbjct: 60  ARELLELP 67

This family contains methyltransferase domains. Length = 117

>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
           DAA+  A + L    G+ VLD CAAPG K   IL+ +     V  +D+   RL   R  L
Sbjct: 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILE-LAPQAQVVALDIDAQRLERVRENL 288

Query: 156 QKYALGDRCRLFVADGTT 173
           Q+  LG +  + V D   
Sbjct: 289 QR--LGLKATVIVGDARD 304

Length = 427

>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
           DA+S     ALN    + +LD+CAAPG K   I +++ + G+V  VD  + RL      +
Sbjct: 70  DASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANI 129

Query: 156 QKYALGDR-CRLFVADGTTFSLAPL-----RLLLD 184
           Q+  LG     +   D        L     R+LLD
Sbjct: 130 QR--LGVFNIIVQEGDARQIDQKLLGGEFDRILLD 162

Length = 277

>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 87  YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
           Y++G     D ++      L+   G+ +LD CAAPG K   I +++GD G +  VD +  
Sbjct: 229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSAS 288

Query: 147 RL 148
           RL
Sbjct: 289 RL 290

Length = 434

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
           VLDL    GA    +    G    VTGVD++   L   R       L D   +   D   
Sbjct: 2   VLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEE 58

Query: 174 FSLAPLR----LLLDPGSCNSVLQEKDDTFREW 202
                      ++ DP   + ++++      E 
Sbjct: 59  LPPEADESFDVIISDP-PLHHLVEDLARFLEEA 90

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
           + +  G  VLD CAAPG K   I +++ D G +  VD++R ++
Sbjct: 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI 275

Length = 431

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163
             L +  GD VLD+   PG     +   +G  G V G+D +   LA  +   +   LG  
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPN 70

Query: 164 CRLFVADGT 172
                 D  
Sbjct: 71  VEFVRGDAD 79

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
           + +G  VLDL    G    ++ + +G    V G+D++   +   +   +K    +     
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFI 59

Query: 168 VAD 170
             D
Sbjct: 60  QGD 62

This family appears to be have methyltransferase activity. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	100.0
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	100.0
PRK14903	431	16S rRNA methyltransferase B; Provisional	100.0
PRK14901	434	16S rRNA methyltransferase B; Provisional	100.0
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	100.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	100.0
PRK10901	427	16S rRNA methyltransferase B; Provisional	100.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	100.0
PRK14904	445	16S rRNA methyltransferase B; Provisional	100.0
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	100.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	100.0
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	99.97
KOG2360	413	consensus Proliferation-associated nucleolar prote	99.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.52
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.49
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.48
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.43
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.33
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.33
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.33
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.31
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.3
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.29
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.29
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.28
PLN02244	340	tocopherol O-methyltransferase	99.25
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.25
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.24
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.23
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.22
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.2
PRK07402	196	precorrin-6B methylase; Provisional	99.19
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.19
PRK14967	223	putative methyltransferase; Provisional	99.17
COG4123	248	Predicted O-methyltransferase [General function pr	99.17
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.17
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.14
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.14
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.13
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.13
PRK04266	226	fibrillarin; Provisional	99.13
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.13
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.13
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.13
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.12
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.12
PRK11207	197	tellurite resistance protein TehB; Provisional	99.11
PLN02476	278	O-methyltransferase	99.09
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.08
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.08
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.08
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.07
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.07
PTZ00146	293	fibrillarin; Provisional	99.06
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.04
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.04
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.03
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.03
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.01
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.01
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.0
COG4122	219	Predicted O-methyltransferase [General function pr	99.0
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.99
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.99
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.99
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.97
PRK08317	241	hypothetical protein; Provisional	98.96
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.96
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.95
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.95
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.95
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.94
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.93
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.93
PLN02336	475	phosphoethanolamine N-methyltransferase	98.92
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.92
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.92
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.91
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.9
PRK14968	188	putative methyltransferase; Provisional	98.9
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.9
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.89
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.87
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.86
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.85
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.84
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.84
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.84
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.84
PRK12335	287	tellurite resistance protein TehB; Provisional	98.83
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.82
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.82
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.81
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.8
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.78
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.78
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.78
PRK06922	677	hypothetical protein; Provisional	98.77
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.75
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.75
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.74
PLN03075	296	nicotianamine synthase; Provisional	98.73
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.72
TIGR00438	188	rrmJ cell division protein FtsJ.	98.71
TIGR03438	301	probable methyltransferase. This model represents	98.69
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.66
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.66
KOG2904	328	consensus Predicted methyltransferase [General fun	98.64
PLN02336	475	phosphoethanolamine N-methyltransferase	98.64
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.64
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.64
PLN02490	340	MPBQ/MSBQ methyltransferase	98.64
PHA03411	279	putative methyltransferase; Provisional	98.63
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.63
PRK06202	232	hypothetical protein; Provisional	98.63
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.62
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.62
PHA03412	241	putative methyltransferase; Provisional	98.62
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.62
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.61
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.61
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.61
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.61
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.6
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.6
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.6
PRK05785	226	hypothetical protein; Provisional	98.59
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.58
PLN02672	1082	methionine S-methyltransferase	98.57
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.57
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.57
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.55
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.55
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.54
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.53
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.52
COG2520	341	Predicted methyltransferase [General function pred	98.51
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.51
PRK04457	262	spermidine synthase; Provisional	98.5
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.5
KOG1271	227	consensus Methyltransferases [General function pre	98.49
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.49
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.49
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.48
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.47
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.47
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.46
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.46
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.44
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.41
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.41
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.4
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.37
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.36
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.34
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.26
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.25
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.25
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.21
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.19
PRK10742	250	putative methyltransferase; Provisional	98.15
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.08
PRK00811	283	spermidine synthase; Provisional	98.07
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.06
KOG4300	252	consensus Predicted methyltransferase [General fun	98.05
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.03
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.03
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.02
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.0
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.99
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	97.97
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.97
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.96
KOG2730	263	consensus Methylase [General function prediction o	97.89
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.88
COG4076	252	Predicted RNA methylase [General function predicti	97.87
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.85
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.84
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.83
PRK03612	521	spermidine synthase; Provisional	97.81
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.81
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.81
PRK04148	134	hypothetical protein; Provisional	97.79
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.77
KOG2899	288	consensus Predicted methyltransferase [General fun	97.76
PRK01581	374	speE spermidine synthase; Validated	97.75
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.72
COG2521	287	Predicted archaeal methyltransferase [General func	97.66
PLN02366	308	spermidine synthase	97.65
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.62
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.62
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.59
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.55
PF13679	141	Methyltransf_32: Methyltransferase domain	97.55
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.53
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.53
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.51
KOG3010	261	consensus Methyltransferase [General function pred	97.48
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.48
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.43
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.41
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.3
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.28
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.19
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.16
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.08
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.05
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.03
PLN02823	336	spermine synthase	97.02
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.01
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.0
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.97
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.96
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.95
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.81
KOG2361	264	consensus Predicted methyltransferase [General fun	96.76
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.73
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.7
COG3897	218	Predicted methyltransferase [General function pred	96.64
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.48
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.47
KOG3115	249	consensus Methyltransferase-like protein [General	96.44
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.41
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.4
COG0286	489	HsdM Type I restriction-modification system methyl	96.15
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.14
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.09
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.04
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.98
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.95
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.89
KOG1227	351	consensus Putative methyltransferase [General func	95.52
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.46
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.43
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.33
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.32
PHA01634	156	hypothetical protein	95.3
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.07
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.0
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	94.92
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	94.75
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.72
PRK11524	284	putative methyltransferase; Provisional	94.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	94.01
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.7
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	93.64
PRK13699	227	putative methylase; Provisional	93.47
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.44
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.0
COG2933	358	Predicted SAM-dependent methyltransferase [General	92.87
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.28
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	92.22
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	91.91
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	91.53
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	89.89
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.78
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	89.51
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	88.76
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	86.4
TIGR00497	501	hsdM type I restriction system adenine methylase (	86.34
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	85.79
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	85.58
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	85.53
KOG4058	199	consensus Uncharacterized conserved protein [Funct	85.46
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	85.14
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	85.0
PRK10458	467	DNA cytosine methylase; Provisional	84.23
COG4798	238	Predicted methyltransferase [General function pred	83.96
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	83.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	83.09
PRK00536	262	speE spermidine synthase; Provisional	83.05
KOG2782	303	consensus Putative SAM dependent methyltransferase	82.63
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	82.54
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.43
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	81.99
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	81.18

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.2e-47  Score=357.07  Aligned_cols=238  Identities=24%  Similarity=0.317  Sum_probs=204.9

Q ss_pred             cCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCCCCc
Q 021397           10 SKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIA   82 (313)
Q Consensus        10 ~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~~~~   82 (313)
                      .+|++|+|+++ +.+.+|.+..  +.. .+.++|+++|+|+   +.+++.+.|+.. |+...+..+.+.++.+....++.
T Consensus        50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~  128 (355)
T COG0144          50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEA-GVLDEKPWVLDEVLRIEASGPIG  128 (355)
T ss_pred             ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhc-ccccccCCccccEEEecCCCCcc
Confidence            56999999999 6777887743  333 4578889999998   567778888765 66555554556788888877889


Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcE-EEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS-VTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .+++|.+|+|++||.+||+++.+|+|+||++|||+||||||||+|+|++|.+.+. |+|+|++++|++.+++|++|+|+.
T Consensus       129 ~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~  208 (355)
T COG0144         129 RLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR  208 (355)
T ss_pred             cChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999987554 599999999999999999999997


Q ss_pred             CcEEEEecCCC----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          162 DRCRLFVADGT----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       162 ~~v~~~~~D~~----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                       |+.+++.|++          .||.+++| ||    |++|+++++|++  .|.....+......+|.++|.++.+++++ 
T Consensus       209 -nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC----Sg~G~irr~Pd~--~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-  280 (355)
T COG0144         209 -NVIVVNKDARRLAELLPGGEKFDRILLDAPC----SGTGVIRRDPDV--KWRRTPEDIAELAKLQKEILAAALKLLKP-  280 (355)
T ss_pred             -ceEEEecccccccccccccCcCcEEEECCCC----CCCcccccCccc--cccCCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence             5888888874          27888888 88    999999999999  56666667777889999999999999866 


Q ss_pred             CcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          231 HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                                ||+||||||| ++|+|||+||.+.+.+
T Consensus       281 ----------GG~LVYSTCS-~~~eENE~vV~~~L~~  306 (355)
T COG0144         281 ----------GGVLVYSTCS-LTPEENEEVVERFLER  306 (355)
T ss_pred             ----------CCEEEEEccC-CchhcCHHHHHHHHHh
Confidence                      9999999999 9999999999766654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=100.00  E-value=1.8e-46  Score=364.30  Aligned_cols=236  Identities=19%  Similarity=0.247  Sum_probs=206.4

Q ss_pred             CCChHHHHH-HHHHcCC-Chh--hhhh-cCCCCeEEEecCC---hHHHHHHHHHhcCCceEEeccCCCcEEeCCC----C
Q 021397           12 LPLPEAFLD-FLKENGL-DPS--VYSA-ADSTPRYIRLKTG---NEADLEEIEAELKCKLEKVVWLSGFYSLPPD----I   79 (313)
Q Consensus        12 ys~P~w~~~-~~~~~g~-~~~--~~~~-~~~~~~~~Rvn~~---~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~----~   79 (313)
                      ..+|+||++ |.+.+|. ++.  ++.+ ++++|+++|||+.   .+++.+.|++. |+.+++++|+|+++.+...    .
T Consensus         2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~-g~~~~~~p~~~~g~~~~~~~~~~~   80 (470)
T PRK11933          2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPY-GWTLTPIPWCEEGFWIERDDEDAL   80 (470)
T ss_pred             CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhC-CCceeECCCCCceEEEecCccccC
Confidence            359999999 7778896 332  4444 5888899999974   46777777765 9999999999999998742    2


Q ss_pred             CCcccccccCCeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397           80 KIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK  157 (313)
Q Consensus        80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  157 (313)
                      .+..++.|..|+||+||+|||+++.++  ++++|++|||+||||||||+++|+++++.|.|+|+|+++.|++.+++|+++
T Consensus        81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r  160 (470)
T PRK11933         81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR  160 (470)
T ss_pred             CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999  899999999999999999999999999889999999999999999999999


Q ss_pred             cCCCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397          158 YALGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR  228 (313)
Q Consensus       158 ~g~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r  228 (313)
                      +|+. ++.+++.|+.        .||.|++| ||    |++|+++++|++...|+++  +.....++|.++|.++.++++
T Consensus       161 ~G~~-nv~v~~~D~~~~~~~~~~~fD~ILvDaPC----SG~G~~rk~p~~~~~~s~~--~v~~l~~lQ~~iL~~A~~~Lk  233 (470)
T PRK11933        161 CGVS-NVALTHFDGRVFGAALPETFDAILLDAPC----SGEGTVRKDPDALKNWSPE--SNLEIAATQRELIESAFHALK  233 (470)
T ss_pred             cCCC-eEEEEeCchhhhhhhchhhcCeEEEcCCC----CCCcccccCHHHhhhCCHH--HHHHHHHHHHHHHHHHHHHcC
Confidence            9996 7999999975        37888999 89    9999999999997777654  445678899999999999986


Q ss_pred             ccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          229 SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       229 ~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      +           ||+||||||| ++|+|||+||.+++++
T Consensus       234 p-----------GG~LVYSTCT-~~~eENE~vV~~~L~~  260 (470)
T PRK11933        234 P-----------GGTLVYSTCT-LNREENQAVCLWLKET  260 (470)
T ss_pred             C-----------CcEEEEECCC-CCHHHHHHHHHHHHHH
Confidence            6           9999999999 9999999999877654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=4e-44  Score=347.13  Aligned_cols=241  Identities=15%  Similarity=0.179  Sum_probs=210.8

Q ss_pred             cccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-
Q 021397            6 DGEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP-   77 (313)
Q Consensus         6 ~~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~-   77 (313)
                      +.++.+||+|+|+++ |.+.+|.+.+  ++. .++++|.++|+|+   +++++.+.|+++ |+.+++.++.|+++.++. 
T Consensus       126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~  204 (431)
T PRK14903        126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEE-GTEAVPGKHSPFSLIVRKL  204 (431)
T ss_pred             hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHC-CCeeEECCCCCceEEEcCC
Confidence            347889999999999 8899997754  344 4589999999997   456778888776 999999999999999875 


Q ss_pred             CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397           78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK  157 (313)
Q Consensus        78 ~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  157 (313)
                      ...+..++.|++|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.+.|+|+|+|++|++.+++|+++
T Consensus       205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r  284 (431)
T PRK14903        205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR  284 (431)
T ss_pred             CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999998789999999999999999999999


Q ss_pred             cCCCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397          158 YALGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR  228 (313)
Q Consensus       158 ~g~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r  228 (313)
                      +|+. +++++++|+.        .||.|++| ||    |+.|+++++|++.  |.....+......+|.+++.++.+.++
T Consensus       285 ~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC----sg~G~~~~~p~~~--~~~~~~~~~~l~~~Q~~iL~~a~~~Lk  357 (431)
T PRK14903        285 LKLS-SIEIKIADAERLTEYVQDTFDRILVDAPC----TSLGTARNHPEVL--RRVNKEDFKKLSEIQLRIVSQAWKLLE  357 (431)
T ss_pred             cCCC-eEEEEECchhhhhhhhhccCCEEEECCCC----CCCccccCChHHH--HhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9996 6999999974        36777888 78    8899999999984  555555666778899999999999886


Q ss_pred             ccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397          229 SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD  266 (313)
Q Consensus       229 ~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~  266 (313)
                      +           ||+||||||| ++|+|||+||...++
T Consensus       358 p-----------GG~LvYsTCs-~~~eEne~vv~~fl~  383 (431)
T PRK14903        358 K-----------GGILLYSTCT-VTKEENTEVVKRFVY  383 (431)
T ss_pred             C-----------CCEEEEEECC-CChhhCHHHHHHHHH
Confidence            6           9999999999 999999999976554

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=2e-43  Score=343.24  Aligned_cols=241  Identities=18%  Similarity=0.225  Sum_probs=210.2

Q ss_pred             ccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCC-
Q 021397            7 GEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPD-   78 (313)
Q Consensus         7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~-   78 (313)
                      .++.+||+|+|+++ |.+.+|.+.+  ++. .+.++|.++|+|+   +.+++.+.|+++ |+.+++.+|+|+++.+... 
T Consensus       142 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~  220 (434)
T PRK14901        142 RLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEA-GITATPIPGLPQGLRLTGNP  220 (434)
T ss_pred             HHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHC-CCceEECCCCCCeEEecCCC
Confidence            37789999999999 8889997753  444 4588999999997   456778888876 9999999999999999753 


Q ss_pred             CCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397           79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus        79 ~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      ..+..+++|++|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.|++.+++|++++
T Consensus       221 ~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~  300 (434)
T PRK14901        221 GSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL  300 (434)
T ss_pred             CccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence            35888999999999999999999999999999999999999999999999999987789999999999999999999999


Q ss_pred             CCCCcEEEEecCCCC-----------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhh
Q 021397          159 ALGDRCRLFVADGTT-----------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAI  226 (313)
Q Consensus       159 g~~~~v~~~~~D~~~-----------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~  226 (313)
                      |+. +|+++++|+..           ||.+++| ||    |++|+++++|++  .|.....+......+|.+++.++.++
T Consensus       301 g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPC----Sg~G~~~r~p~~--~~~~~~~~~~~l~~~Q~~iL~~a~~~  373 (434)
T PRK14901        301 GLK-SIKILAADSRNLLELKPQWRGYFDRILLDAPC----SGLGTLHRHPDA--RWRQTPEKIQELAPLQAELLESLAPL  373 (434)
T ss_pred             CCC-eEEEEeCChhhcccccccccccCCEEEEeCCC----CcccccccCcch--hhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            996 69999999853           5667777 77    888999999998  67666666667788899999999998


Q ss_pred             ccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          227 VRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       227 ~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      ++|           ||+||||||| ++|+|||++|.+.+++
T Consensus       374 lkp-----------gG~lvystcs-i~~~Ene~~v~~~l~~  402 (434)
T PRK14901        374 LKP-----------GGTLVYATCT-LHPAENEAQIEQFLAR  402 (434)
T ss_pred             cCC-----------CCEEEEEeCC-CChhhHHHHHHHHHHh
Confidence            866           9999999999 9999999999666554

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=100.00  E-value=4.7e-43  Score=339.97  Aligned_cols=242  Identities=18%  Similarity=0.196  Sum_probs=207.3

Q ss_pred             cccccCCCChHHHHH-HHHHcCCCh-hhhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397            6 DGEISKLPLPEAFLD-FLKENGLDP-SVYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI   79 (313)
Q Consensus         6 ~~~~~~ys~P~w~~~-~~~~~g~~~-~~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~   79 (313)
                      +.++.+||+|+|+++ |.+.++.+. .+.. .++++|+++|+|+   +.+++.+.|+++ |+.+++.+|.|+++.+..+.
T Consensus       129 ~~l~~~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~  207 (426)
T TIGR00563       129 NALDARYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEA-GMKGFPHDLAPDAVRLETPA  207 (426)
T ss_pred             HhHHHHcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhc-CCceeeCCCCCCeEEECCCC
Confidence            457889999999999 888885442 2443 4589999999997   456778888876 99999999999999998655


Q ss_pred             CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397           80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus        80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      .+..++.|++|++++||.+|++++.++++++|++|||+|||||+||.++++.++ .++|+|+|++++|++.+++|++++|
T Consensus       208 ~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g  286 (426)
T TIGR00563       208 AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG  286 (426)
T ss_pred             CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence            688999999999999999999999999999999999999999999999999987 6899999999999999999999999


Q ss_pred             CCCcEEEEecCCC---------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397          160 LGDRCRLFVADGT---------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS  229 (313)
Q Consensus       160 ~~~~v~~~~~D~~---------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~  229 (313)
                      +..++.+..+|+.         .||.+++| ||    |++|+++++|++  .|.....+......+|.+++.++.++++|
T Consensus       287 ~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPc----Sg~G~~~~~p~~--~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp  360 (426)
T TIGR00563       287 LTIKAETKDGDGRGPSQWAENEQFDRILLDAPC----SATGVIRRHPDI--KWLRKPRDIAELAELQSEILDAIWPLLKT  360 (426)
T ss_pred             CCeEEEEeccccccccccccccccCEEEEcCCC----CCCcccccCcch--hhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8533444666653         37777888 78    999999999998  67666666777788999999999998866


Q ss_pred             cCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          230 EHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       230 ~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                                 ||+||||||| ++|+|||+||...+.+
T Consensus       361 -----------gG~lvystcs-~~~~Ene~~v~~~l~~  386 (426)
T TIGR00563       361 -----------GGTLVYATCS-VLPEENSEQIKAFLQE  386 (426)
T ss_pred             -----------CcEEEEEeCC-CChhhCHHHHHHHHHh
Confidence                       9999999999 9999999999655543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=100.00  E-value=4.3e-43  Score=322.51  Aligned_cols=214  Identities=22%  Similarity=0.301  Sum_probs=186.0

Q ss_pred             hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCc--EEeCCCCCCcccccccCCeEEEecHHHHHHHHhcCC
Q 021397           34 AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGF--YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI  108 (313)
Q Consensus        34 ~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~  108 (313)
                      .+.++|.++|+|+   +++++.+.|++. |+.+++.++.+++  +.......+..++.|++|++++||.+||+++.+|++
T Consensus         5 ~n~~~~~~iRvN~~k~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~~   83 (283)
T PF01189_consen    5 NNCPPPVTIRVNTLKISREELLEELEEE-GIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALDP   83 (283)
T ss_dssp             CTS--GEEEEE-TTTSSHHHHHHHHHHT-THEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHTT
T ss_pred             cCCCCCeEEEECcCcCCHHHHHHHHhhc-ccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccccccc
Confidence            4688999999997   457788899876 9999999999998  344455678999999999999999999999999999


Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---------CCCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---------TFSLAPL  179 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---------~~d~v~~  179 (313)
                      ++|+.|||+||||||||.++++.|++.|.|+|+|++++|+..++++++++|+. ++.++..|++         .||.+++
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhhc
Confidence            99999999999999999999999998999999999999999999999999996 6888888874         3788888


Q ss_pred             c-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhc----cccCcceeEeecCCcEEEEEcCCCCCc
Q 021397          180 R-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIV----RSEHPELIFYGRRSGIVGLTKEEIYQS  254 (313)
Q Consensus       180 D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~----r~~~~El~~~~k~gG~lvysTcs~~~p  254 (313)
                      | ||    |++|+++++|++  .|.....+......+|.++|+++.+++    ++           ||+||||||| ++|
T Consensus       163 DaPC----Sg~G~i~r~p~~--~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-----------gG~lvYsTCS-~~~  224 (283)
T PF01189_consen  163 DAPC----SGLGTIRRNPDI--KWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-----------GGRLVYSTCS-LSP  224 (283)
T ss_dssp             ECSC----CCGGGTTTCTTH--HHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-----------EEEEEEEESH-HHG
T ss_pred             CCCc----cchhhhhhccch--hhcccccccchHHHHHHHHHHHHHHhhcccccC-----------CCeEEEEecc-HHH
Confidence            9 88    999999999998  455555666677888999999999988    77           9999999999 999


Q ss_pred             ccchhhhhhcccc
Q 021397          255 VCNSEVSSSGYDK  267 (313)
Q Consensus       255 ~Ene~vv~~~~~~  267 (313)
                      +|||+||...+++
T Consensus       225 eENE~vV~~fl~~  237 (283)
T PF01189_consen  225 EENEEVVEKFLKR  237 (283)
T ss_dssp             GGTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999766554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=3.7e-40  Score=319.72  Aligned_cols=239  Identities=19%  Similarity=0.254  Sum_probs=205.8

Q ss_pred             cccccCCCChHHHHH-HHHHcCCCh-hhhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397            6 DGEISKLPLPEAFLD-FLKENGLDP-SVYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI   79 (313)
Q Consensus         6 ~~~~~~ys~P~w~~~-~~~~~g~~~-~~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~   79 (313)
                      ..++.+||+|+|+++ |.+.+|.+. .+.. .+.++|.++|+|+   +++++.+.|+++ |+.+++.+|.|+++.+....
T Consensus       135 ~~~~~~~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  213 (427)
T PRK10901        135 ADPVARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEA-GIEAFPHAVGPDAIRLETPV  213 (427)
T ss_pred             hchHhHhcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhC-CCceeecCCCCCeEEECCCC
Confidence            357889999999999 888886442 2444 4589999999997   457778888876 99999999999999998655


Q ss_pred             CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397           80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus        80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      .+..+++|++|++++||.+|++++.++++++|++|||+|||||++|.++++.+++ +.|+|+|+++.|++.+++|++++|
T Consensus       214 ~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g  292 (427)
T PRK10901        214 PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLG  292 (427)
T ss_pred             CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcC
Confidence            6889999999999999999999999999999999999999999999999998754 799999999999999999999999


Q ss_pred             CCCcEEEEecCCC---------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397          160 LGDRCRLFVADGT---------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS  229 (313)
Q Consensus       160 ~~~~v~~~~~D~~---------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~  229 (313)
                      +  +++++++|+.         .||.+++| ||    +++|+++++|++  .|.....+.......|.+++..+.++++|
T Consensus       293 ~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc----s~~G~~~~~p~~--~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp  364 (427)
T PRK10901        293 L--KATVIVGDARDPAQWWDGQPFDRILLDAPC----SATGVIRRHPDI--KWLRRPEDIAALAALQSEILDALWPLLKP  364 (427)
T ss_pred             C--CeEEEEcCcccchhhcccCCCCEEEECCCC----CcccccccCccc--cccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8  3788999984         36677778 67    888999999997  57666666666778899999999988865


Q ss_pred             cCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397          230 EHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD  266 (313)
Q Consensus       230 ~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~  266 (313)
                                 ||+++||||| +.++|||+++...+.
T Consensus       365 -----------GG~lvystcs-~~~~Ene~~v~~~l~  389 (427)
T PRK10901        365 -----------GGTLLYATCS-ILPEENEQQIKAFLA  389 (427)
T ss_pred             -----------CCEEEEEeCC-CChhhCHHHHHHHHH
Confidence                       9999999999 999999999965554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=1.2e-39  Score=317.88  Aligned_cols=240  Identities=21%  Similarity=0.265  Sum_probs=208.9

Q ss_pred             ccccCCCChHHHHH-HHHHcCCChh--hhhh-cCCCCeEEEecCC---hHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397            7 GEISKLPLPEAFLD-FLKENGLDPS--VYSA-ADSTPRYIRLKTG---NEADLEEIEAELKCKLEKVVWLSGFYSLPPDI   79 (313)
Q Consensus         7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~~-~~~~~~~~Rvn~~---~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~   79 (313)
                      .++.+||+|+|+++ |.+.+|.+.+  ++.+ +.++|.++|+|+.   .+++.+.|+++ |+.+++.+|.|+++.++. .
T Consensus       142 ~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~-~  219 (444)
T PRK14902        142 RLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEE-GYEVEESLLSPEALVIEK-G  219 (444)
T ss_pred             HHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHc-CceeEEcCCCCCeEEEeC-C
Confidence            36789999999999 8888987754  4444 5889999999974   56777888876 999999999999999986 5


Q ss_pred             CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397           80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus        80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      .+..++.|++|.+++||.+|++++.++++++|++|||+|||||++|+++++.+++.+.|+|+|+++.+++.+++|++++|
T Consensus       220 ~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g  299 (444)
T PRK14902        220 NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG  299 (444)
T ss_pred             CcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999999999998667899999999999999999999999


Q ss_pred             CCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          160 LGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       160 ~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                      +. +++++++|+.        .||.+++| ||    ++.|+++++|++  .|............+|..++..+.++++| 
T Consensus       300 ~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc----sg~G~~~~~p~~--~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-  371 (444)
T PRK14902        300 LT-NIETKALDARKVHEKFAEKFDKILVDAPC----SGLGVIRRKPDI--KYNKTKEDIESLQEIQLEILESVAQYLKK-  371 (444)
T ss_pred             CC-eEEEEeCCcccccchhcccCCEEEEcCCC----CCCeeeccCcch--hhcCCHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence            96 5999999984        36677777 67    888999999997  56666566667788899999999988865 


Q ss_pred             CcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          231 HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                                ||+||||||| +.++|||.|+.+.+++
T Consensus       372 ----------GG~lvystcs-~~~~Ene~vv~~~l~~  397 (444)
T PRK14902        372 ----------GGILVYSTCT-IEKEENEEVIEAFLEE  397 (444)
T ss_pred             ----------CCEEEEEcCC-CChhhhHHHHHHHHHh
Confidence                      9999999999 9999999999665543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=8.4e-39  Score=311.77  Aligned_cols=238  Identities=18%  Similarity=0.194  Sum_probs=199.9

Q ss_pred             ccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397            7 GEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI   79 (313)
Q Consensus         7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~   79 (313)
                      .++.+||+|+|+++ |.+.+|.+.+  +.. .+.+||.++|+|+   +.+++.+.|.++ |+.+++.++ + .+.+... 
T Consensus       144 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~-~~~~~~~~~-~-~~~~~~~-  219 (445)
T PRK14904        144 RLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADA-SVTFEKSGL-P-NFFLSKD-  219 (445)
T ss_pred             HHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhC-CCceEEcCc-c-eEEEecc-
Confidence            46789999999999 8888997754  444 3578888999997   566777788766 888877664 3 3455432 


Q ss_pred             CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397           80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus        80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      .....+.|..|.+++||++|++++.++++++|++|||+|||||+||.++++.+++.+.|+|+|+|+.|++.++++++++|
T Consensus       220 ~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  299 (445)
T PRK14904        220 FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG  299 (445)
T ss_pred             ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC
Confidence            22233899999999999999999999999999999999999999999999998777899999999999999999999999


Q ss_pred             CCCcEEEEecCCCC------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCc
Q 021397          160 LGDRCRLFVADGTT------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP  232 (313)
Q Consensus       160 ~~~~v~~~~~D~~~------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~  232 (313)
                      +. +|+++++|+..      ||.+++| ||    |++|+++++|++  .|.............|.+++.++.+.+++   
T Consensus       300 ~~-~v~~~~~Da~~~~~~~~fD~Vl~D~Pc----sg~g~~~r~p~~--~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---  369 (445)
T PRK14904        300 IT-IIETIEGDARSFSPEEQPDAILLDAPC----TGTGVLGRRAEL--RWKLTPEKLAELVGLQAELLDHAASLLKP---  369 (445)
T ss_pred             CC-eEEEEeCcccccccCCCCCEEEEcCCC----CCcchhhcCcch--hhcCCHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence            95 79999999864      7778888 88    999999999998  46655556666788899999999998866   


Q ss_pred             ceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          233 ELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       233 El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                              ||+|+|+||| ++|+|||+||...+++
T Consensus       370 --------gG~lvystcs-~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        370 --------GGVLVYATCS-IEPEENELQIEAFLQR  395 (445)
T ss_pred             --------CcEEEEEeCC-CChhhHHHHHHHHHHh
Confidence                    9999999999 9999999999666554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=100.00  E-value=3.1e-39  Score=300.02  Aligned_cols=274  Identities=17%  Similarity=0.166  Sum_probs=210.8

Q ss_pred             ccccCCCChHHHHH-HHHHcCCChh--hhhh-cCCCCeEEEecCCh---HHHHHHHHHhcCCceEEe-ccCCCcEEeCC-
Q 021397            7 GEISKLPLPEAFLD-FLKENGLDPS--VYSA-ADSTPRYIRLKTGN---EADLEEIEAELKCKLEKV-VWLSGFYSLPP-   77 (313)
Q Consensus         7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~~-~~~~~~~~Rvn~~~---~~~~~~L~~~~g~~~~~~-~~~~~~~~l~~-   77 (313)
                      ++|..|++-..+.. +++.+...+.  .+++ ..++|.++|.|+.+   -+....|... |+...+. .|..-++.+-. 
T Consensus       130 ~~~~~y~y~~~l~~~~~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nr-gv~~~pl~~ws~vgl~v~~s  208 (460)
T KOG1122|consen  130 DGAHYYAYGVFLAEKLMELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNR-GVNLDPLGKWSKVGLVVFDS  208 (460)
T ss_pred             cccceechHHHHHHHhcccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhc-ccCcccccccccceEEEecC
Confidence            45667777777766 4443322222  2233 47888999999754   3445555544 7765443 47777777754 


Q ss_pred             CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397           78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK  157 (313)
Q Consensus        78 ~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  157 (313)
                      ..++..++.|..|++.+|+.+|.+++.+|+||||++||||||||||||++||.+|+++|.|+|+|.+..|+..++.|+.+
T Consensus       209 ~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r  288 (460)
T KOG1122|consen  209 VVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR  288 (460)
T ss_pred             ccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEecCCCC---------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhc
Q 021397          158 YALGDRCRLFVADGTT---------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIV  227 (313)
Q Consensus       158 ~g~~~~v~~~~~D~~~---------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~  227 (313)
                      +|+. +..+.+.|+..         ||.|++| ||    |++|++.+.+.+  .|.....+..+...+|++++..|..++
T Consensus       289 lGv~-ntiv~n~D~~ef~~~~~~~~fDRVLLDAPC----SGtgvi~K~~~v--kt~k~~~di~~~~~LQr~LllsAi~lv  361 (460)
T KOG1122|consen  289 LGVT-NTIVSNYDGREFPEKEFPGSFDRVLLDAPC----SGTGVISKDQSV--KTNKTVKDILRYAHLQRELLLSAIDLV  361 (460)
T ss_pred             hCCC-ceEEEccCcccccccccCcccceeeecCCC----CCCccccccccc--ccchhHHHHHHhHHHHHHHHHHHHhhc
Confidence            9996 68888999864         5666677 67    777788888776  676777777788999999999999999


Q ss_pred             cccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccce-eec-cccccCCCcccccccccccccccccccCCccccc
Q 021397          228 RSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKV-LVD-AECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD  305 (313)
Q Consensus       228 r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~-l~d-~e~~~~~~~~~~~~~~~w~~~~~~~~~~~~~r~~  305 (313)
                      ++           ||+||||||| +.++|||+||++.+++. -+. ++|..+.   +.+|  .+.+..|++.+...+|+.
T Consensus       362 ~~-----------GGvLVYSTCS-I~~~ENE~vV~yaL~K~p~~kL~p~~~~i---G~~G--~~~~~~~~psl~~~~r~y  424 (460)
T KOG1122|consen  362 KA-----------GGVLVYSTCS-ITVEENEAVVDYALKKRPEVKLVPTGLDI---GGEG--RFRGGRFHPSLKLTRRFY  424 (460)
T ss_pred             cC-----------CcEEEEEeee-cchhhhHHHHHHHHHhCCceEeccccccC---CCCC--cccCcccCcchhheeeec
Confidence            76           9999999999 99999999999988875 111 2222222   2222  345555666665555553

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=100.00  E-value=7.1e-38  Score=285.68  Aligned_cols=205  Identities=19%  Similarity=0.216  Sum_probs=176.2

Q ss_pred             EEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEE
Q 021397           42 IRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP-DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL  117 (313)
Q Consensus        42 ~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDl  117 (313)
                      +|||+   +++++++.|++. |+.+++.. .|+++.+.. ...+..++.|++|++++||.+|++++.++++++|++|||+
T Consensus         1 ~RvN~lk~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl   78 (264)
T TIGR00446         1 IRVNTLKISVADLLQRLENR-GVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM   78 (264)
T ss_pred             CeecCCCCCHHHHHHHHHhC-CCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence            36664   678888899876 88887754 466776763 3358899999999999999999999999999999999999


Q ss_pred             CCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-------CCCccccc-cccCccccc
Q 021397          118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-------TFSLAPLR-LLLDPGSCN  189 (313)
Q Consensus       118 cagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-------~~d~v~~D-~~l~~~s~s  189 (313)
                      |||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+. ++++++.|+.       .||.+++| ||    |++
T Consensus        79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc----sg~  153 (264)
T TIGR00446        79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLDAPC----SGE  153 (264)
T ss_pred             CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEcCCC----CCC
Confidence            99999999999999987789999999999999999999999986 6999999974       37788888 88    899


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      |+++++|+..  |.............|.+++..+.+++++           ||+||||||| ++++|||+||.+.+++
T Consensus       154 G~~~~~p~~~--~~~~~~~~~~l~~~q~~iL~~a~~~lkp-----------gG~lvYstcs-~~~~Ene~vv~~~l~~  217 (264)
T TIGR00446       154 GVIRKDPSRK--KNWSEEDIQEISALQKELIDSAFDALKP-----------GGVLVYSTCS-LEPEENEAVVDYLLEK  217 (264)
T ss_pred             cccccChhhh--hcCCHHHHHHHHHHHHHHHHHHHHhcCC-----------CCEEEEEeCC-CChHHHHHHHHHHHHh
Confidence            9999999984  4444455566778899999999998866           9999999999 9999999999766554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.4e-31  Score=246.67  Aligned_cols=210  Identities=22%  Similarity=0.317  Sum_probs=161.1

Q ss_pred             EEeccCCCcEEeCCCC---------CCcccc-----cccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHH
Q 021397           64 EKVVWLSGFYSLPPDI---------KIATSM-----AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL  129 (313)
Q Consensus        64 ~~~~~~~~~~~l~~~~---------~~~~~~-----~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la  129 (313)
                      .+.+|.|+.+.+....         .+...+     ...-|.++.||.+||+++.+|+++||++|||||||||+||.++.
T Consensus        95 ~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLL  174 (375)
T KOG2198|consen   95 FELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLL  174 (375)
T ss_pred             ccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHH
Confidence            4567788776665321         122233     34678999999999999999999999999999999999999998


Q ss_pred             HHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC----------------CCCccccc-cccCccccc
Q 021397          130 DIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----------------TFSLAPLR-LLLDPGSCN  189 (313)
Q Consensus       130 ~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~----------------~~d~v~~D-~~l~~~s~s  189 (313)
                      +.+..   .|.|+|+|.+..|+..+++.+++..-. ++.+...|+.                .||.|++| ||    |+.
T Consensus       175 eal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPC----S~D  249 (375)
T KOG2198|consen  175 EALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPC----SGD  249 (375)
T ss_pred             HHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCchhhhhhcceeEEeccc----CCC
Confidence            87742   369999999999999999999777643 5556655553                25566667 67    778


Q ss_pred             cccccccccccc-ccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccce
Q 021397          190 SVLQEKDDTFRE-WTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKV  268 (313)
Q Consensus       190 g~l~~~p~~~~~-w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~  268 (313)
                      |++++++++++. |.....  ..+..+|.++|++..+++++           ||+||||||| ++|.|||+||+..+.++
T Consensus       250 gt~rk~~~i~~~~w~~~~~--~~L~~LQ~~iL~rgl~lLk~-----------GG~lVYSTCS-LnpieNEaVV~~~L~~~  315 (375)
T KOG2198|consen  250 GTLRKNPNIWKEGWKTQRA--LGLHALQLRILRRGLRLLKV-----------GGRLVYSTCS-LNPIENEAVVQEALQKV  315 (375)
T ss_pred             cccccCchHhhhhhhhhhc--cCChHHHHHHHHHHHHHhcC-----------CCEEEEeccC-CCchhhHHHHHHHHHHh
Confidence            899999999888 866542  34467899999999999966           9999999999 99999999998777654


Q ss_pred             eecccc---ccCC-Cccccccccccccc
Q 021397          269 LVDAEC---THDG-SIKHIQKFENWGWT  292 (313)
Q Consensus       269 l~d~e~---~~~~-~~~~~~~~~~w~~~  292 (313)
                      -.+.+.   +.+. .+.++++.+.|.--
T Consensus       316 ~~~~~lv~~~~~lp~l~r~~g~t~~~~~  343 (375)
T KOG2198|consen  316 GGAVELVDVSGDLPGLKRMFGSTGWKVH  343 (375)
T ss_pred             cCcccceeeccccccceecCCCCcceEE
Confidence            333332   2222 34578888888743

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.1e-23  Score=194.51  Aligned_cols=209  Identities=21%  Similarity=0.228  Sum_probs=153.7

Q ss_pred             CCCCeEEEecCCh---HHHHHHHHHhcCC---------ceEEeccCCCcEEeCCCCCCcccccccCCeEEEecHHHHHHH
Q 021397           36 DSTPRYIRLKTGN---EADLEEIEAELKC---------KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV  103 (313)
Q Consensus        36 ~~~~~~~Rvn~~~---~~~~~~L~~~~g~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~~~Qd~ss~~~~  103 (313)
                      .+.|+|+|+|+.+   ++.+..|..+ +.         .+--.++.++.+.++.+..+...+.|+.|.+.+||.+|.+++
T Consensus       128 ~~~pr~vRINtlk~~~~e~~~~L~~e-~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA  206 (413)
T KOG2360|consen  128 IPLPRYVRINTLKGTTDEALDYLDYE-KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPA  206 (413)
T ss_pred             CCCceeEEeecccCchhhhhhhhhhh-hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchh
Confidence            5899999999854   3334444333 22         222344556666666555678899999999999999999999


Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC----C----
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF----S----  175 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~----d----  175 (313)
                      +.|+|.+|..|+|.||+||.||.|+|..+.+.|+|.|.|.+..|.+.+++.++..|.. .++...+|+...    +    
T Consensus       207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v  285 (413)
T KOG2360|consen  207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDV  285 (413)
T ss_pred             hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccce
Confidence            9999999999999999999999999999999999999999999999999999999986 677888887541    1    


Q ss_pred             -ccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCC
Q 021397          176 -LAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ  253 (313)
Q Consensus       176 -~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~  253 (313)
                       .+++| +|    |+||+..+.-...-.=.+........+..|..++.++...-+            --+|+||||| ++
T Consensus       286 ~~iL~Dpsc----SgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~------------~k~vvystcs-~~  348 (413)
T KOG2360|consen  286 TYILVDPSC----SGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN------------LKRLVYSTCS-LH  348 (413)
T ss_pred             eEEEeCCCC----CCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc------------hhheeeecch-hh
Confidence             24455 34    666654433222110111122223447778877777665222            3379999999 99


Q ss_pred             cccchhhhhh
Q 021397          254 SVCNSEVSSS  263 (313)
Q Consensus       254 p~Ene~vv~~  263 (313)
                      .+|||+||..
T Consensus       349 reene~vv~d  358 (413)
T KOG2360|consen  349 REENEQVVQE  358 (413)
T ss_pred             hhhhhHHHHH
Confidence            9999999953

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=3.2e-16  Score=139.83  Aligned_cols=119  Identities=22%  Similarity=0.303  Sum_probs=99.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      -..++..+.+.+|++|||+|||||-.+..+++..+ .++|+++|+|++||+.+++.+...+..+ ++++.+||..+++  
T Consensus        40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf--  115 (238)
T COG2226          40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF--  115 (238)
T ss_pred             HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC--
Confidence            34566677777999999999999999999999988 7999999999999999999999998874 9999999999984  


Q ss_pred             cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      -|..||.++++..+|+-+++-                         +    ...|+++|+||||+++.-.=+
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~-------------------------~----aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDID-------------------------K----ALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHH-------------------------H----HHHHHHHhhcCCeEEEEEEcC
Confidence            478888889999998887751                         1    124788889999966544433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.52  E-value=4.6e-14  Score=126.47  Aligned_cols=118  Identities=21%  Similarity=0.307  Sum_probs=82.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .++..+.+++|.+|||+|||||..+..+++..+..++|+++|+|+.|++.+++++++.+.. +|+++++|++.+++  -|
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~--~d  114 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF--PD  114 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S---T
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC--CC
Confidence            4555678899999999999999999999998877789999999999999999999999886 89999999999885  36


Q ss_pred             cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..||.++|+..++.-+|.                  .+.           ..|+++++||||+++.-.-+
T Consensus       115 ~sfD~v~~~fglrn~~d~------------------~~~-----------l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPDR------------------ERA-----------LREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             T-EEEEEEES-GGG-SSH------------------HHH-----------HHHHHHHEEEEEEEEEEEEE
T ss_pred             CceeEEEHHhhHHhhCCH------------------HHH-----------HHHHHHHcCCCeEEEEeecc
Confidence            777777999888877763                  111           13566677889998876665

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.49  E-value=4.6e-13  Score=105.60  Aligned_cols=61  Identities=26%  Similarity=0.382  Sum_probs=56.1

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ||.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++.+.+..++++++++|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            688999999999999999999655 4789999999999999999998788778999999999

...

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.48  E-value=4.9e-13  Score=128.51  Aligned_cols=132  Identities=14%  Similarity=0.078  Sum_probs=97.5

Q ss_pred             cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 021397           84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-D  162 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~  162 (313)
                      ..++++|+|..|......+..+.   +|.+|||+|||+|+++++++.  ++..+|+++|+|+.+++.+++|++.+|+. +
T Consensus       197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~  271 (396)
T PRK15128        197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS  271 (396)
T ss_pred             ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence            46789999999988877766553   588999999999999887664  34458999999999999999999999985 4


Q ss_pred             cEEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          163 RCRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       163 ~v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                      +++++++|+.           .||.+++| |.|..                   ..........-...+...+.+++++ 
T Consensus       272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------------~k~~l~~~~~~y~~l~~~a~~lLk~-  331 (396)
T PRK15128        272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------------NKSQLMGACRGYKDINMLAIQLLNP-  331 (396)
T ss_pred             cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------------ChHHHHHHHHHHHHHHHHHHHHcCC-
Confidence            7999999973           46777777 44221                   0011111122234445556666654 


Q ss_pred             CcceeEeecCCcEEEEEcCC
Q 021397          231 HPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs  250 (313)
                                ||.+++++||
T Consensus       332 ----------gG~lv~~scs  341 (396)
T PRK15128        332 ----------GGILLTFSCS  341 (396)
T ss_pred             ----------CeEEEEEeCC
Confidence                      9999999998

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.43  E-value=9.8e-13  Score=125.28  Aligned_cols=132  Identities=20%  Similarity=0.172  Sum_probs=106.3

Q ss_pred             cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 021397           84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-D  162 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~  162 (313)
                      ..+.++|+|..|..+...+...+.   |++|||++|-||++|.++|.  ++..+|++||+|...++.+++|++.+|+. .
T Consensus       194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~  268 (393)
T COG1092         194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD  268 (393)
T ss_pred             CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence            347799999999999988887763   99999999999999999986  34459999999999999999999999985 4


Q ss_pred             cEEEEecCC-----------CCCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          163 RCRLFVADG-----------TTFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       163 ~v~~~~~D~-----------~~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                      ++.++++|+           ..||.|++| |.|.         ++++          ......+-...++..+.++++| 
T Consensus       269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~---------r~k~----------~~~~~~rdy~~l~~~~~~iL~p-  328 (393)
T COG1092         269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA---------RSKK----------QEFSAQRDYKDLNDLALRLLAP-  328 (393)
T ss_pred             ceeeehhhHHHHHHHHHhcCCcccEEEECCcccc---------cCcc----------cchhHHHHHHHHHHHHHHHcCC-
Confidence            588999997           369999999 5532         2222          2223345556677778888766 


Q ss_pred             CcceeEeecCCcEEEEEcCC
Q 021397          231 HPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs  250 (313)
                                ||+++.|||+
T Consensus       329 ----------gG~l~~~s~~  338 (393)
T COG1092         329 ----------GGTLVTSSCS  338 (393)
T ss_pred             ----------CCEEEEEecC
Confidence                      9999999998

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.33  E-value=1.5e-11  Score=104.91  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=67.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +-..+....|.|+||+.++|+|||+|+.|..++ ++++.++|+|+|.++++++..++|++++|++ |++++.+|+-.
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~   95 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPE   95 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchH
Confidence            344556678899999999999999999999999 6777899999999999999999999999975 89999999854

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.33  E-value=3.9e-12  Score=112.61  Aligned_cols=132  Identities=20%  Similarity=0.135  Sum_probs=99.0

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC-----cEEEEEcCCHHHHHHHHHHHHHcCCCCc--EEEEecCCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-----GSVTGVDVARHRLAACRTLLQKYALGDR--CRLFVADGTT  173 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~-----~~V~avD~s~~~l~~~~~~~~~~g~~~~--v~~~~~D~~~  173 (313)
                      ..+..|+|.+|+++||+|+|+|-.|+-+.+..+..     ++|+.+|+|++||..++++.++.++..+  +.++.+||+.
T Consensus        91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            45677889999999999999999999999998753     7999999999999999999988887655  8999999998


Q ss_pred             CCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCC
Q 021397          174 FSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ  253 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~  253 (313)
                      +++  -|..+|.-+.++.+|.-+++.                 +            ...|.|+|+||||+..   |=-|+
T Consensus       171 LpF--dd~s~D~yTiafGIRN~th~~-----------------k------------~l~EAYRVLKpGGrf~---cLeFs  216 (296)
T KOG1540|consen  171 LPF--DDDSFDAYTIAFGIRNVTHIQ-----------------K------------ALREAYRVLKPGGRFS---CLEFS  216 (296)
T ss_pred             CCC--CCCcceeEEEecceecCCCHH-----------------H------------HHHHHHHhcCCCcEEE---EEEcc
Confidence            873  134455556677777666541                 1            1235677888999776   75244


Q ss_pred             cccchhhhhhcccc
Q 021397          254 SVCNSEVSSSGYDK  267 (313)
Q Consensus       254 p~Ene~vv~~~~~~  267 (313)
                      ..||+ .+.+++|.
T Consensus       217 kv~~~-~l~~fy~~  229 (296)
T KOG1540|consen  217 KVENE-PLKWFYDQ  229 (296)
T ss_pred             ccccH-HHHHHHHh
Confidence            44554 44444443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.33  E-value=1e-11  Score=114.06  Aligned_cols=131  Identities=16%  Similarity=0.150  Sum_probs=94.7

Q ss_pred             cccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .-..+.++|+|..|.+...++....   .|.+|||++|-+|++|.+++.  ++..+|++||.|...++.+++|++.+|+.
T Consensus        98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~  172 (286)
T PF10672_consen   98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD  172 (286)
T ss_dssp             ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred             EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3446789999999999999887764   588999999999999998775  34458999999999999999999999975


Q ss_pred             -CcEEEEecCCC----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397          162 -DRCRLFVADGT----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS  229 (313)
Q Consensus       162 -~~v~~~~~D~~----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~  229 (313)
                       ++++++..|+.          .||.|.+| |.|.         +.     .|.        ..+-..+++..+.+++++
T Consensus       173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~---------k~-----~~~--------~~~~y~~L~~~a~~ll~~  230 (286)
T PF10672_consen  173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA---------KS-----KFD--------LERDYKKLLRRAMKLLKP  230 (286)
T ss_dssp             CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE---------SS-----TCE--------HHHHHHHHHHHHHHTEEE
T ss_pred             ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC---------CC-----HHH--------HHHHHHHHHHHHHHhcCC
Confidence             57899999973          57888888 5542         00     111        112344566677777765


Q ss_pred             cCcceeEeecCCcEEEEEcCC
Q 021397          230 EHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       230 ~~~El~~~~k~gG~lvysTcs  250 (313)
                                 ||.|+.+|||
T Consensus       231 -----------gG~l~~~scs  240 (286)
T PF10672_consen  231 -----------GGLLLTCSCS  240 (286)
T ss_dssp             -----------EEEEEEEE--
T ss_pred             -----------CCEEEEEcCC
Confidence                       9999999999

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=3.2e-11  Score=109.99  Aligned_cols=119  Identities=21%  Similarity=0.254  Sum_probs=86.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH--cCCCCcEEEEecCCCCCCccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK--YALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      .+...+.++++++|||+|||+|..+..+++..+..+.|+|+|+|+.|++.++++...  .+...+++++++|+..+++  
T Consensus        64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--  141 (261)
T PLN02233         64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--  141 (261)
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--
Confidence            345567788899999999999999999998876567999999999999999877542  1222379999999988764  


Q ss_pred             cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .|..||.+.++.++++-++.                  .+.+.           |++.++||||+++..+.+
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~------------------~~~l~-----------ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDR------------------LKAMQ-----------EMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             CCCCEeEEEEecccccCCCH------------------HHHHH-----------HHHHHcCcCcEEEEEECC
Confidence            24456655777666554432                  11122           233345679999998876

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=3.2e-11  Score=106.13  Aligned_cols=74  Identities=12%  Similarity=0.238  Sum_probs=66.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ......++++++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|+++.++.++++++.+|+..
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~  135 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence            44566788899999999999999999999998876689999999999999999999999986679999999864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.29  E-value=2.8e-11  Score=105.86  Aligned_cols=75  Identities=21%  Similarity=0.350  Sum_probs=65.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..++...+++.++++|||+|||+|..+..++..++..++|+++|+++.+++.+++|++++++.+++.++.+|+..
T Consensus        29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~  103 (198)
T PRK00377         29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE  103 (198)
T ss_pred             HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence            344455678999999999999999999999988776689999999999999999999999965689999999865

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.29  E-value=3.3e-11  Score=124.03  Aligned_cols=135  Identities=17%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-  161 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-  161 (313)
                      -....++|+|..|.....++....   +|.+|||+|||+|+++++++..  +..+|+++|+|+.+++.+++|++.+|+. 
T Consensus       514 ~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~  588 (702)
T PRK11783        514 LTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSG  588 (702)
T ss_pred             cCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            345678999999998888777654   5889999999999999999974  3357999999999999999999999985 


Q ss_pred             CcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCc
Q 021397          162 DRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP  232 (313)
Q Consensus       162 ~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~  232 (313)
                      ++++++++|+.        .||.|.+| |.|..    +  ....+   .|        ........++..+.+++++   
T Consensus       589 ~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~----~--~~~~~---~~--------~~~~~y~~l~~~a~~lL~~---  648 (702)
T PRK11783        589 RQHRLIQADCLAWLKEAREQFDLIFIDPPTFSN----S--KRMED---SF--------DVQRDHVALIKDAKRLLRP---  648 (702)
T ss_pred             cceEEEEccHHHHHHHcCCCcCEEEECCCCCCC----C--Cccch---hh--------hHHHHHHHHHHHHHHHcCC---
Confidence            57999999962        57888888 44320    0  00000   11        1122344455556666654   


Q ss_pred             ceeEeecCCcEEEEEcCC
Q 021397          233 ELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       233 El~~~~k~gG~lvysTcs  250 (313)
                              ||++++++|+
T Consensus       649 --------gG~l~~~~~~  658 (702)
T PRK11783        649 --------GGTLYFSNNK  658 (702)
T ss_pred             --------CCEEEEEeCC
Confidence                    9999999998

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.28  E-value=4.2e-11  Score=100.07  Aligned_cols=83  Identities=18%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      +.+.+|||+|||+|..+..+++..+..++++++|+|+.+++.+++++++.++. +++++++|+.+++.. +...||.+.+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~-~~~~~D~I~~   79 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQE-LEEKFDIIIS   79 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccc-cCCCeeEEEE
Confidence            56889999999999999999976655689999999999999999999999997 899999999887632 1134444466


Q ss_pred             ccccc
Q 021397          189 NSVLQ  193 (313)
Q Consensus       189 sg~l~  193 (313)
                      .+++.
T Consensus        80 ~~~l~   84 (152)
T PF13847_consen   80 NGVLH   84 (152)
T ss_dssp             ESTGG
T ss_pred             cCchh
Confidence            66653

...

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=5.1e-11  Score=105.39  Aligned_cols=83  Identities=20%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |....+..-...+...+++++|++|||+|||+|+.|..+++..+..++|+++|+++.+++.++++++++|+. +++++.+
T Consensus        56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~g  134 (212)
T PRK13942         56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVG  134 (212)
T ss_pred             CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC
Confidence            444445555566777889999999999999999999999998876689999999999999999999999985 7999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus       135 d~~~  138 (212)
T PRK13942        135 DGTL  138 (212)
T ss_pred             Cccc
Confidence            9864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.28  E-value=6.9e-11  Score=105.40  Aligned_cols=92  Identities=18%  Similarity=0.303  Sum_probs=73.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ......+.+++|++|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++.++. +++++.+|+..++.  .
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~  111 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELPF--D  111 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCCC--C
Confidence            44556778889999999999999999999998766689999999999999999999888874 79999999977653  1


Q ss_pred             ccccCcccccccccc
Q 021397          180 RLLLDPGSCNSVLQE  194 (313)
Q Consensus       180 D~~l~~~s~sg~l~~  194 (313)
                      +..||.+.+...++.
T Consensus       112 ~~~fD~V~~~~~l~~  126 (231)
T TIGR02752       112 DNSFDYVTIGFGLRN  126 (231)
T ss_pred             CCCccEEEEeccccc
Confidence            234444444444443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.25  E-value=8.5e-11  Score=111.21  Aligned_cols=92  Identities=14%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             HHHhcCC-----CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          102 AVSALNI-----SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       102 ~~~~l~~-----~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +...+.+     +++++|||+|||+|+.+..+++..  ...|+|+|+|+.+++.++++++..++.++++++.+|+..+++
T Consensus       105 ~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~  182 (340)
T PLN02244        105 SLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF  182 (340)
T ss_pred             HHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC
Confidence            4445555     678999999999999999999876  368999999999999999999998887789999999987654


Q ss_pred             cccccccCccccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~p~  197 (313)
                        .|..||.+.+...+.+.++
T Consensus       183 --~~~~FD~V~s~~~~~h~~d  201 (340)
T PLN02244        183 --EDGQFDLVWSMESGEHMPD  201 (340)
T ss_pred             --CCCCccEEEECCchhccCC
Confidence              2455666566666655554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.25  E-value=6.7e-11  Score=106.50  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ....+|.-|.+  ++...+++.||++||+.|.|+|+.|..++..+++.|+|+..|+++.+.+.+++|++++|+.+++++.
T Consensus        20 rtQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~   97 (247)
T PF08704_consen   20 RTQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVH   97 (247)
T ss_dssp             SS----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred             CcceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeE
Confidence            34456665654  5667899999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ecCCC
Q 021397          168 VADGT  172 (313)
Q Consensus       168 ~~D~~  172 (313)
                      +.|..
T Consensus        98 ~~Dv~  102 (247)
T PF08704_consen   98 HRDVC  102 (247)
T ss_dssp             ES-GG
T ss_pred             eccee
Confidence            99985

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=7.6e-11  Score=104.93  Aligned_cols=89  Identities=26%  Similarity=0.370  Sum_probs=77.8

Q ss_pred             ccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        85 ~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      ..|+.+--.+--+.|.+++..+++.||++|||.|.|+|..|..||...++.|+|+..|+.+..++.|++|++..|+.+++
T Consensus        69 ~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v  148 (256)
T COG2519          69 LSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV  148 (256)
T ss_pred             HhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence            34665555555555667888999999999999999999999999999998999999999999999999999999998779


Q ss_pred             EEEecCCCC
Q 021397          165 RLFVADGTT  173 (313)
Q Consensus       165 ~~~~~D~~~  173 (313)
                      .+..+|...
T Consensus       149 ~~~~~Dv~~  157 (256)
T COG2519         149 TLKLGDVRE  157 (256)
T ss_pred             EEEeccccc
Confidence            999999864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.23  E-value=1.1e-10  Score=103.24  Aligned_cols=74  Identities=22%  Similarity=0.380  Sum_probs=66.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ...+..++++++|++|||+|||+|..+..+++..+..++|+++|+++.+++.++++++++|+. +++++.+|+..
T Consensus        66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~  139 (215)
T TIGR00080        66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence            345667788999999999999999999999998776688999999999999999999999985 79999999854

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.22  E-value=8.4e-11  Score=100.40  Aligned_cols=75  Identities=21%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      |.++.+++..+...++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++|++.+++.+ ++++..|..
T Consensus        17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~   91 (170)
T PF05175_consen   17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLF   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTT
T ss_pred             CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccc
Confidence            67888888888776889999999999999999998754 3579999999999999999999999974 999999974

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.20  E-value=1.1e-10  Score=106.94  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA  177 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v  177 (313)
                      .-..++..++++||++|||+|||.|+.+..+++..+  .+|+++.+|+...+.+++.+++.|+.+++++...|...++. 
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-  126 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-  126 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence            344677888999999999999999999999999874  69999999999999999999999998899999999877655 


Q ss_pred             ccccccCcccccccccccc
Q 021397          178 PLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       178 ~~D~~l~~~s~sg~l~~~p  196 (313)
                      .+|.    +.+.|++.+-+
T Consensus       127 ~fD~----IvSi~~~Ehvg  141 (273)
T PF02353_consen  127 KFDR----IVSIEMFEHVG  141 (273)
T ss_dssp             S-SE----EEEESEGGGTC
T ss_pred             CCCE----EEEEechhhcC
Confidence            4444    37778776653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.19  E-value=2e-10  Score=100.22  Aligned_cols=82  Identities=11%  Similarity=0.118  Sum_probs=71.7

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |.-..|.+..+++...++++++++|||+|||+|..+..+++..+ .+.|+++|+|+.+++.+++|++++++. +++++.+
T Consensus        20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~   97 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG   97 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence            44466788888888889999999999999999999999987654 479999999999999999999999985 7999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus        98 d~~~  101 (196)
T PRK07402         98 SAPE  101 (196)
T ss_pred             chHH
Confidence            9854

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.19  E-value=6e-11  Score=94.26  Aligned_cols=61  Identities=33%  Similarity=0.440  Sum_probs=55.7

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      |.+|||+|||+|..+..+++..  ..+++++|+++..++.+++++...++.++++++++|+..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   61 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARD   61 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhh
Confidence            6799999999999999999875  479999999999999999999999987789999999853

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.17  E-value=3.7e-10  Score=100.52  Aligned_cols=87  Identities=24%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             CeEEEecHHHHHHHHh---cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           90 GKIYGIDAASGAAVSA---LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~---l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      |.|..|..+ .+++..   +.++++++|||+|||+|..+..++.. + ..+|+++|+++.+++.+++|++..++  ++++
T Consensus        14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~   88 (223)
T PRK14967         14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDV   88 (223)
T ss_pred             CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEE
Confidence            555666544 344433   34678899999999999999998875 3 35899999999999999999999887  5888


Q ss_pred             EecCCC------CCCcccccc
Q 021397          167 FVADGT------TFSLAPLRL  181 (313)
Q Consensus       167 ~~~D~~------~~d~v~~D~  181 (313)
                      +.+|..      .||.+..||
T Consensus        89 ~~~d~~~~~~~~~fD~Vi~np  109 (223)
T PRK14967         89 RRGDWARAVEFRPFDVVVSNP  109 (223)
T ss_pred             EECchhhhccCCCeeEEEECC
Confidence            888874      355555553

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.17  E-value=1.6e-10  Score=103.40  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-----  172 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----  172 (313)
                      .|++++.+..+....+|||+|||.|..++.+|++..+ .+|++||+++.+.+.|++|++.+++.++|+++++|..     
T Consensus        32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            4788888888888999999999999999999998765 8999999999999999999999999999999999984     


Q ss_pred             ----CCCccccc-cccC
Q 021397          173 ----TFSLAPLR-LLLD  184 (313)
Q Consensus       173 ----~~d~v~~D-~~l~  184 (313)
                          .||.|..+ |-|.
T Consensus       111 ~~~~~fD~Ii~NPPyf~  127 (248)
T COG4123         111 LVFASFDLIICNPPYFK  127 (248)
T ss_pred             ccccccCEEEeCCCCCC
Confidence                36677777 4433

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.17  E-value=3.6e-10  Score=103.45  Aligned_cols=87  Identities=22%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD  184 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~  184 (313)
                      ...+++|++|||+|||+|..+..+++.++..++|+++|+++.+++.++++.+..++. +++++.+|+..+++  .+..||
T Consensus        72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~--~~~~fD  148 (272)
T PRK11873         72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV--ADNSVD  148 (272)
T ss_pred             hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC--CCCcee
Confidence            346789999999999999999988888877679999999999999999999999985 79999999876553  123344


Q ss_pred             cccccccccc
Q 021397          185 PGSCNSVLQE  194 (313)
Q Consensus       185 ~~s~sg~l~~  194 (313)
                      .+.+..++..
T Consensus       149 ~Vi~~~v~~~  158 (272)
T PRK11873        149 VIISNCVINL  158 (272)
T ss_pred             EEEEcCcccC
Confidence            4444444433

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.14  E-value=2.9e-10  Score=98.18  Aligned_cols=63  Identities=14%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +|.+|||+|||+|..+..++... +.++|+|+|+|+.+++.++++++++++. +++++++|+..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~  104 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF  104 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc
Confidence            48899999999999999998754 3478999999999999999999999985 699999999875

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.14  E-value=4.3e-10  Score=101.70  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +.++.+|||+|||+|..+..+++.+ .+.++|+|+|+|+.|++.+++++++++...+++++++|+..++.
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~  123 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI  123 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC
Confidence            4578899999999999999998864 34579999999999999999999998876689999999877654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=5.6e-10  Score=101.75  Aligned_cols=95  Identities=17%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |-..-..++..+.++||++|||+|||.|+.+..+|+..+  .+|+|+++|+++.+.+++.++..|+.+++++...|-+.+
T Consensus        57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~  134 (283)
T COG2230          57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF  134 (283)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence            334445577788999999999999999999999999873  799999999999999999999999988899999998876


Q ss_pred             CccccccccCcccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +-- +|    .++..|++.+-.
T Consensus       135 ~e~-fD----rIvSvgmfEhvg  151 (283)
T COG2230         135 EEP-FD----RIVSVGMFEHVG  151 (283)
T ss_pred             ccc-cc----eeeehhhHHHhC
Confidence            643 44    448888876654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.13  E-value=3.6e-10  Score=99.64  Aligned_cols=83  Identities=20%  Similarity=0.418  Sum_probs=66.7

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |....|-.--..+.++|+++||++|||+|||+|+.|..++.+.+..+.|+++|+++..++.+++++++++.. ||.++.+
T Consensus        52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~g  130 (209)
T PF01135_consen   52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVG  130 (209)
T ss_dssp             TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES
T ss_pred             eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEc
Confidence            444434333344667889999999999999999999999999988889999999999999999999999996 7999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus       131 dg~~  134 (209)
T PF01135_consen  131 DGSE  134 (209)
T ss_dssp             -GGG
T ss_pred             chhh
Confidence            9854

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK04266 fibrillarin; Provisional

Probab=99.13  E-value=5.8e-10  Score=99.56  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             HHHHHHHHh--cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           97 AASGAAVSA--LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        97 ~ss~~~~~~--l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .++.+++.+  +++++|++|||+|||+|.++.++++.++ .+.|+|+|+++.|++.+.+++++.   .|+.++.+|+..
T Consensus        57 ~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~  131 (226)
T PRK04266         57 LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARK  131 (226)
T ss_pred             hHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCC
Confidence            334444433  8899999999999999999999999886 689999999999999888887654   368999999864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.13  E-value=4.6e-10  Score=103.63  Aligned_cols=72  Identities=22%  Similarity=0.306  Sum_probs=62.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCccccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLR  180 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D  180 (313)
                      ++++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+.      .||.+..|
T Consensus       119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            44567999999999999999998765 47999999999999999999999998767999999973      36666677

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=5.8e-10  Score=97.18  Aligned_cols=81  Identities=16%  Similarity=0.311  Sum_probs=70.9

Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      .|.+.-|-.--....++|++++|++||++|||+|+.|..||++.   ++|+++|+.+...+.+++|++.+|+. ||.+++
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~  126 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE-NVTVRH  126 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            46655555445567788999999999999999999999999986   48999999999999999999999997 699999


Q ss_pred             cCCCC
Q 021397          169 ADGTT  173 (313)
Q Consensus       169 ~D~~~  173 (313)
                      +|+..
T Consensus       127 gDG~~  131 (209)
T COG2518         127 GDGSK  131 (209)
T ss_pred             CCccc
Confidence            99954

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.13  E-value=7e-10  Score=95.99  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..++.....+...+++.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++|++++++. +++++.+|+.
T Consensus        14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~   91 (187)
T PRK08287         14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP   91 (187)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence            34555566677788888999999999999999999998754 479999999999999999999999885 6999998874

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.12  E-value=7.9e-10  Score=94.97  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC---
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~---  173 (313)
                      ..+.++...+...++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++|++..+.  +++++.+|...   
T Consensus         6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   80 (179)
T TIGR00537         6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR   80 (179)
T ss_pred             ccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC
Confidence            345666677777778899999999999999999852   3899999999999999999998886  58888888743   


Q ss_pred             --CCccccc
Q 021397          174 --FSLAPLR  180 (313)
Q Consensus       174 --~d~v~~D  180 (313)
                        ||.+..+
T Consensus        81 ~~fD~Vi~n   89 (179)
T TIGR00537        81 GKFDVILFN   89 (179)
T ss_pred             CcccEEEEC
Confidence              4555555

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.12  E-value=8e-10  Score=99.23  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ...+++..++...++.+|||+|||+|+-++.++..++..++|+++|+++++++.+++|+++.|+.++++++.+|+..
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~  131 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS  131 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence            34556666666677889999999999999999998877789999999999999999999999998889999999843

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.11  E-value=8.4e-10  Score=96.46  Aligned_cols=88  Identities=17%  Similarity=0.093  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      +..+...+...++.+|||+|||+|..+..+++.   ..+|+|+|+|+.+++.++++++..++. ++++...|...++.  
T Consensus        19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~--   92 (197)
T PRK11207         19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF--   92 (197)
T ss_pred             hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc--
Confidence            345566677778899999999999999999985   358999999999999999999988885 68899999876543  


Q ss_pred             cccccCccccccccc
Q 021397          179 LRLLLDPGSCNSVLQ  193 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~  193 (313)
                       +..||.+.|+++++
T Consensus        93 -~~~fD~I~~~~~~~  106 (197)
T PRK11207         93 -DGEYDFILSTVVLM  106 (197)
T ss_pred             -CCCcCEEEEecchh
Confidence             33355556766653

>PLN02476 O-methyltransferase

Probab=99.09  E-value=1.4e-09  Score=99.44  Aligned_cols=82  Identities=6%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      ...+.....++...++...+..+|||+|++.|+.|+++|..+++.|+|+++|.++++.+.+++++++.|+.++|+++.+|
T Consensus        99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd  178 (278)
T PLN02476         99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL  178 (278)
T ss_pred             ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            34556666777777777788899999999999999999999887889999999999999999999999998899999999


Q ss_pred             CC
Q 021397          171 GT  172 (313)
Q Consensus       171 ~~  172 (313)
                      +.
T Consensus       179 A~  180 (278)
T PLN02476        179 AA  180 (278)
T ss_pred             HH
Confidence            73

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.08  E-value=1e-09  Score=95.20  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+++++++.++. +++++.+|+..++.
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~  109 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ  109 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC
Confidence            3589999999999999999998654 479999999999999999999999986 59999999977553

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.08  E-value=2.3e-09  Score=85.51  Aligned_cols=70  Identities=16%  Similarity=0.286  Sum_probs=61.2

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +...+.+.++++|||+|||+|..+..+++..++ ++|+++|+|+.+++.++++++.+++. +++++.+|+..
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~   80 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPE   80 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccc
Confidence            445667778899999999999999999998764 79999999999999999999999886 68998888753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.08  E-value=1.3e-09  Score=102.62  Aligned_cols=72  Identities=26%  Similarity=0.342  Sum_probs=60.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ...+.++++++|+.|||.|||+|+.+..++..   ...|+|+|+++.|++.+++|++.+|+.+ +.+..+|+..++
T Consensus       172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~  243 (329)
T TIGR01177       172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLP  243 (329)
T ss_pred             HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCC
Confidence            33445667889999999999999998876653   3689999999999999999999999974 889999987543

This family is found exclusively in the Archaea.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.07  E-value=1.2e-09  Score=99.15  Aligned_cols=119  Identities=14%  Similarity=0.143  Sum_probs=80.5

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---------CCCccccc-
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---------TFSLAPLR-  180 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---------~~d~v~~D-  180 (313)
                      +.+|||+|||+|..++.+++..+. .+|+|+|+|+.+++.+++|++.++.    +++++|..         .||.+.+| 
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence            468999999999999999987653 5899999999999999999988763    56777753         36777777 


Q ss_pred             cccCcccccccccc-cccccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQE-KDDTFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~-~p~~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |+    ...+.+.. .|+. +.+.+...-  .......+..++..+.+.+++           ||.+++.+..
T Consensus       162 Py----~~~~~~~~~~~e~-~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-----------gG~l~l~~~~  218 (251)
T TIGR03704       162 PY----VPTDAIALMPPEA-RDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-----------GGHLLVETSE  218 (251)
T ss_pred             CC----CCchhhhcCCHHH-HhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-----------CCEEEEEECc
Confidence            55    22232222 2332 111111100  012345566677777777755           9999999876

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.07  E-value=1.4e-09  Score=101.46  Aligned_cols=70  Identities=23%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRL  181 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~  181 (313)
                      ..+|||+|||+|..+..++...+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+.      .||.+..||
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP  209 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNP  209 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence            36899999999999999998764 47899999999999999999999998767999999963      367777773

>PTZ00146 fibrillarin; Provisional

Probab=99.06  E-value=1.5e-09  Score=99.68  Aligned_cols=65  Identities=23%  Similarity=0.343  Sum_probs=54.8

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.+++|++|||+|||||++|.++++.+++.+.|+|+|+++.+++.+.+.+++.   .||.++..|++.
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~  192 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARY  192 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccC
Confidence            56789999999999999999999999987899999999988776666555432   368899999864

>TIGR00740 methyltransferase, putative

Probab=99.04  E-value=2.7e-09  Score=95.85  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +.++.+|||+|||+|..+..+++... +.++|+++|+|+.|++.++++++..+...+++++++|+..++.
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~  120 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  120 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence            35788999999999999999998753 3579999999999999999999887765579999999987664

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.04  E-value=9.2e-10  Score=96.62  Aligned_cols=64  Identities=14%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC-CCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-TTFS  175 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~-~~~d  175 (313)
                      ++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.++++++..++. ++.++++|+ ..++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~  104 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLL  104 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHH
Confidence            578999999999999999998765 368999999999999999999998884 799999998 5443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.03  E-value=3.4e-09  Score=97.81  Aligned_cols=124  Identities=12%  Similarity=0.103  Sum_probs=83.4

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCccccccccC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRLLLD  184 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~~l~  184 (313)
                      +.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++++.++++++.+|..      .||.+..||-+.
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi  193 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI  193 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence            36999999999999999998865 36899999999999999999999998656999999863      467777774332


Q ss_pred             cccccccccccccccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          185 PGSCNSVLQEKDDTFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       185 ~~s~sg~l~~~p~~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ....   +...++.. .|.+...-  .........+++..+.+.+++           ||.+++.++.
T Consensus       194 ~~~~---~~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-----------gG~l~~e~g~  246 (284)
T TIGR00536       194 DEED---LADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKP-----------NGFLVCEIGN  246 (284)
T ss_pred             Ccch---hhcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-----------CCEEEEEECc
Confidence            2111   11112111 12211100  011123445555666666654           9999998886

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.03  E-value=1.2e-09  Score=102.29  Aligned_cols=86  Identities=13%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .+.+|.+|||+|||+|..+..+++.   ...|+|+|+++++++.++++++..+...+++++++|+..++.  .+..||.+
T Consensus       128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V  202 (322)
T PLN02396        128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV  202 (322)
T ss_pred             cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence            3567889999999999999999863   368999999999999999887766554579999999877653  23456666


Q ss_pred             ccccccccccc
Q 021397          187 SCNSVLQEKDD  197 (313)
Q Consensus       187 s~sg~l~~~p~  197 (313)
                      .|..++.+-++
T Consensus       203 i~~~vLeHv~d  213 (322)
T PLN02396        203 LSLEVIEHVAN  213 (322)
T ss_pred             EEhhHHHhcCC
Confidence            88888876665

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.01  E-value=5.7e-09  Score=98.70  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--  172 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--  172 (313)
                      .|..+.++...+......+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++++.++.  .+++..|+.  
T Consensus       181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~  257 (342)
T PRK09489        181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD  257 (342)
T ss_pred             CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence            477888888877666667999999999999999998754 368999999999999999999999874  466777753  


Q ss_pred             ---CCCcccccccc
Q 021397          173 ---TFSLAPLRLLL  183 (313)
Q Consensus       173 ---~~d~v~~D~~l  183 (313)
                         .||.+..+|.|
T Consensus       258 ~~~~fDlIvsNPPF  271 (342)
T PRK09489        258 IKGRFDMIISNPPF  271 (342)
T ss_pred             cCCCccEEEECCCc
Confidence               35555555543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.01  E-value=4e-09  Score=99.04  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+.+.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.++.+.+...+..+...++.++.+|+..++.   +
T Consensus       113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~  187 (322)
T PRK15068        113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---L  187 (322)
T ss_pred             HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---c
Confidence            3445666678899999999999999999886 3 247999999999987665543433333479999999887764   4


Q ss_pred             cccCccccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~  197 (313)
                      ..||.+.|.+++.+..+
T Consensus       188 ~~FD~V~s~~vl~H~~d  204 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRS  204 (322)
T ss_pred             CCcCEEEECChhhccCC
Confidence            45666688888765443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.00  E-value=2.6e-09  Score=93.22  Aligned_cols=85  Identities=19%  Similarity=0.038  Sum_probs=64.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+.+.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++++..++  ++.+...|...++.   +
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~---~   92 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL---N   92 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc---c
Confidence            4445666667789999999999999999974   36899999999999999999988887  37777778754432   3


Q ss_pred             cccCccccccccc
Q 021397          181 LLLDPGSCNSVLQ  193 (313)
Q Consensus       181 ~~l~~~s~sg~l~  193 (313)
                      ..+|.+.++.+++
T Consensus        93 ~~fD~I~~~~~~~  105 (195)
T TIGR00477        93 EDYDFIFSTVVFM  105 (195)
T ss_pred             CCCCEEEEecccc
Confidence            3345445555553

Part of a tellurite-reducing operon tehA and tehB

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.00  E-value=2.5e-09  Score=97.04  Aligned_cols=86  Identities=16%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      .-+...+.+.++.+|||+|||+|..+..+++..+ .++|+|+|+|+.|++.++++        +++++.+|+..+.   .
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~---~   86 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK---P   86 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC---C
Confidence            3345567778899999999999999999998864 47899999999999988752        4678889987653   2


Q ss_pred             ccccCccccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~  197 (313)
                      +..||.+.|..+++..++
T Consensus        87 ~~~fD~v~~~~~l~~~~d  104 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPE  104 (255)
T ss_pred             CCCceEEEEehhhhhCCC
Confidence            455666677777654443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.00  E-value=9.5e-10  Score=95.87  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+.+|||+|||+|..+..+++..+ ...|+|+|+++.+++.+++++++.++. |++++++|+..+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~   78 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANEL   78 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHH
Confidence            456999999999999999998865 478999999999999999999999986 799999999754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.00  E-value=3.9e-09  Score=93.19  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=68.9

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe-cCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV-ADG  171 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~-~D~  171 (313)
                      .+...++..++......+||++|.+.|..|++||..++..++++++|+++++.+.+++|+++.|+.++|+++. +|+
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda  121 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA  121 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence            5666777778888888999999999999999999999877899999999999999999999999998888888 476

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.99  E-value=4.3e-09  Score=95.47  Aligned_cols=91  Identities=22%  Similarity=0.282  Sum_probs=67.5

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .|...+..+...+.+.++.+|||+|||+|..+..+++..+ .+.|+|+|+|+.+++.+++++     . ++.++.+|+..
T Consensus        15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~   87 (258)
T PRK01683         15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----P-DCQFVEADIAS   87 (258)
T ss_pred             HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhc
Confidence            3444455556667778899999999999999999998864 479999999999999998763     2 57888999875


Q ss_pred             CCccccccccCcccccccccc
Q 021397          174 FSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      +..   +..||.+.++.+++.
T Consensus        88 ~~~---~~~fD~v~~~~~l~~  105 (258)
T PRK01683         88 WQP---PQALDLIFANASLQW  105 (258)
T ss_pred             cCC---CCCccEEEEccChhh
Confidence            431   234454566655543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.99  E-value=2.6e-09  Score=97.02  Aligned_cols=82  Identities=13%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.++++++..|+.++++++++|+..+.. ..+..||.+.|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-HLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-hcCCCCCEEEe
Confidence            45689999999999999999985   368999999999999999999999987689999999876532 12334555566


Q ss_pred             cccccc
Q 021397          189 NSVLQE  194 (313)
Q Consensus       189 sg~l~~  194 (313)
                      .+++..
T Consensus       119 ~~vl~~  124 (255)
T PRK11036        119 HAVLEW  124 (255)
T ss_pred             hhHHHh
Confidence            666543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.99  E-value=7.5e-09  Score=92.11  Aligned_cols=93  Identities=23%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.++.+|+..++.  .
T Consensus        41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~  118 (239)
T PRK00216         41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--P  118 (239)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--C
Confidence            34455666778899999999999999999998753579999999999999999998876665578999999876542  1


Q ss_pred             ccccCcccccccccc
Q 021397          180 RLLLDPGSCNSVLQE  194 (313)
Q Consensus       180 D~~l~~~s~sg~l~~  194 (313)
                      +..+|.+.++..+..
T Consensus       119 ~~~~D~I~~~~~l~~  133 (239)
T PRK00216        119 DNSFDAVTIAFGLRN  133 (239)
T ss_pred             CCCccEEEEeccccc
Confidence            234454455555443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.97  E-value=3.1e-09  Score=96.12  Aligned_cols=89  Identities=20%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+|...+..+...+...++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.++++..      .+.++++|+.
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~   95 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE   95 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence            368888888888887777889999999999999888763   3689999999999999887632      2457888987


Q ss_pred             CCCccccccccCcccccccc
Q 021397          173 TFSLAPLRLLLDPGSCNSVL  192 (313)
Q Consensus       173 ~~d~v~~D~~l~~~s~sg~l  192 (313)
                      .+++  .+..||.+.++..+
T Consensus        96 ~~~~--~~~~fD~V~s~~~l  113 (251)
T PRK10258         96 SLPL--ATATFDLAWSNLAV  113 (251)
T ss_pred             cCcC--CCCcEEEEEECchh
Confidence            7653  23445544554444

>PRK08317 hypothetical protein; Provisional

Probab=98.96  E-value=1.1e-08  Score=90.63  Aligned_cols=89  Identities=24%  Similarity=0.362  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +...+.+.++.+|||+|||+|..+..+++.++..++++++|+++.+++.++++....  ..++.+..+|+..++.  .+.
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~   86 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF--PDG   86 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC--CCC
Confidence            445677889999999999999999999998755579999999999999999873322  2378999999876553  123


Q ss_pred             ccCcccccccccc
Q 021397          182 LLDPGSCNSVLQE  194 (313)
Q Consensus       182 ~l~~~s~sg~l~~  194 (313)
                      .||.+.+..++..
T Consensus        87 ~~D~v~~~~~~~~   99 (241)
T PRK08317         87 SFDAVRSDRVLQH   99 (241)
T ss_pred             CceEEEEechhhc
Confidence            4444455554443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.96  E-value=9.8e-09  Score=96.19  Aligned_cols=71  Identities=15%  Similarity=0.332  Sum_probs=63.1

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ....++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++++|+. ++.++.+|+..
T Consensus        72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~  142 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY  142 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence            445667889999999999999999999998865678999999999999999999999985 79999999754

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.95  E-value=1.5e-08  Score=94.38  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ....+...++..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++++++.|+.++++++.+|+...+
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~  212 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES  212 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence            345566677788889999999999999999999875 478999997 7899999999999999888999999986543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.95  E-value=1.3e-08  Score=89.88  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |....+-.....+...+.++++++|||+|||+|..+..+++..   ++|+++|+++.+++.++++++++++. +++++.+
T Consensus        58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~  133 (212)
T PRK00312         58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG  133 (212)
T ss_pred             CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC
Confidence            4444444444556677889999999999999999999888764   48999999999999999999999986 6999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus       134 d~~~  137 (212)
T PRK00312        134 DGWK  137 (212)
T ss_pred             Cccc
Confidence            9743

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.95  E-value=7.8e-09  Score=94.48  Aligned_cols=74  Identities=27%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccc
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPL  179 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~  179 (313)
                      +...++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.+++|++ .+...++.++.+|..      .||.+..
T Consensus       104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~  181 (275)
T PRK09328        104 LLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVS  181 (275)
T ss_pred             ccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEE
Confidence            3456788999999999999999999875 4799999999999999999998 333347999999873      4666666


Q ss_pred             cc
Q 021397          180 RL  181 (313)
Q Consensus       180 D~  181 (313)
                      ||
T Consensus       182 np  183 (275)
T PRK09328        182 NP  183 (275)
T ss_pred             CC
Confidence            73

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.95  E-value=7.3e-09  Score=94.62  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             cccCCeEEEecH-HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           86 AYKQGKIYGIDA-ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        86 ~~~~G~~~~Qd~-ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      .|..|++..... .+..++..+.+.++.+|||+|||+|+.+..+++..  .++|+++|+|+.+++.+++++..   .+++
T Consensus        27 ~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i  101 (263)
T PTZ00098         27 IFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKI  101 (263)
T ss_pred             HhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCce
Confidence            345566666533 24445567788999999999999999999998764  36899999999999999987653   2479


Q ss_pred             EEEecCCCCCCccccccccCcccccccc
Q 021397          165 RLFVADGTTFSLAPLRLLLDPGSCNSVL  192 (313)
Q Consensus       165 ~~~~~D~~~~d~v~~D~~l~~~s~sg~l  192 (313)
                      .+..+|+...++.  +..||.+.+..++
T Consensus       102 ~~~~~D~~~~~~~--~~~FD~V~s~~~l  127 (263)
T PTZ00098        102 EFEANDILKKDFP--ENTFDMIYSRDAI  127 (263)
T ss_pred             EEEECCcccCCCC--CCCeEEEEEhhhH
Confidence            9999998754431  2334444444433

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.94  E-value=1.8e-09  Score=94.93  Aligned_cols=74  Identities=16%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+++..++......+||++|++.|.-|+++|+.+++.++|+++|+++.+.+.+++++++.|+.++|+++.+|+.
T Consensus        34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~  107 (205)
T PF01596_consen   34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL  107 (205)
T ss_dssp             HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred             HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence            34444444444567999999999999999999998889999999999999999999999999889999999984

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00452 methyltransferase, putative

Probab=98.93  E-value=1.1e-08  Score=95.45  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL  182 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~  182 (313)
                      ...+++.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.++.+++..-+..+...++.+...|+..++.   +..
T Consensus       114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~  188 (314)
T TIGR00452       114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYA  188 (314)
T ss_pred             HHhcCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCC
Confidence            33456788999999999999999888865 2 257999999999998765433333333467788888766553   235


Q ss_pred             cCccccccccccccc
Q 021397          183 LDPGSCNSVLQEKDD  197 (313)
Q Consensus       183 l~~~s~sg~l~~~p~  197 (313)
                      ||.+.|.|++.+.++
T Consensus       189 FD~V~s~gvL~H~~d  203 (314)
T TIGR00452       189 FDTVFSMGVLYHRKS  203 (314)
T ss_pred             cCEEEEcchhhccCC
Confidence            666688888866554

Known examples to date are restricted to the proteobacteria.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.93  E-value=3e-09  Score=82.59  Aligned_cols=74  Identities=22%  Similarity=0.321  Sum_probs=56.5

Q ss_pred             EEEECCCcChHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397          114 VLDLCAAPGAKLCMILDII--GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV  191 (313)
Q Consensus       114 VLDlcagpG~kt~~la~~~--~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~  191 (313)
                      |||+|||+|..+..+++..  +....++++|+|+.+++.++++.+..+.  +++++++|+..++.  .+..++.+.|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~--~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF--SDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH--HSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc--cCCCeeEEEEcCC
Confidence            7999999999999999986  2236899999999999999999988777  68999999988653  3455555566553

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.92  E-value=1.1e-08  Score=101.11  Aligned_cols=92  Identities=17%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..++..+.+.++.+|||+|||+|..+..+++..  ...|+|+|+|+.+++.++++....  ..++++..+|+...++  .
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~--~  329 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY--P  329 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC--C
Confidence            345566677889999999999999999999875  368999999999999999887533  3479999999876543  2


Q ss_pred             ccccCccccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~  197 (313)
                      +..||.+.|.+++.+.++
T Consensus       330 ~~~fD~I~s~~~l~h~~d  347 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQD  347 (475)
T ss_pred             CCCEEEEEECCcccccCC
Confidence            345666677777765544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.92  E-value=1.7e-08  Score=96.45  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEecCCC-
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG--DRCRLFVADGT-  172 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~~v~~~~~D~~-  172 (313)
                      |..+.+....+....+.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++|++.++..  .+++++..|+. 
T Consensus       214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            88898888888766677999999999999999998864 479999999999999999999888753  26888888863 


Q ss_pred             -----CCCccccccccC
Q 021397          173 -----TFSLAPLRLLLD  184 (313)
Q Consensus       173 -----~~d~v~~D~~l~  184 (313)
                           .||.|+.+|.|.
T Consensus       293 ~~~~~~fDlIlsNPPfh  309 (378)
T PRK15001        293 GVEPFRFNAVLCNPPFH  309 (378)
T ss_pred             cCCCCCEEEEEECcCcc
Confidence                 466666666543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.92  E-value=1.9e-09  Score=95.38  Aligned_cols=106  Identities=21%  Similarity=0.216  Sum_probs=79.9

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      -+|.+|||+|||-|..+..||+.   +..|+|+|++++.++.++..+.+.|+  ++......+..+...  --.||.+.|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~--~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASA--GGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhc--CCCccEEEE
Confidence            47999999999999999999985   37899999999999999999988887  355554444322110  024455588


Q ss_pred             cccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          189 NSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       189 sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      --++.|-|+.                  ...++.+.+++||           ||.++.||=-
T Consensus       131 mEVlEHv~dp------------------~~~~~~c~~lvkP-----------~G~lf~STin  163 (243)
T COG2227         131 MEVLEHVPDP------------------ESFLRACAKLVKP-----------GGILFLSTIN  163 (243)
T ss_pred             hhHHHccCCH------------------HHHHHHHHHHcCC-----------CcEEEEeccc
Confidence            8889888875                  1234567777755           9999999975

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.91  E-value=1.5e-08  Score=97.31  Aligned_cols=83  Identities=13%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---
Q 021397           97 AASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---  172 (313)
Q Consensus        97 ~ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---  172 (313)
                      ....++-.++. +.++.+|||+|||+|..+..++...+ ..+|+|+|+|+.+++.+++|+++++.  +++++++|..   
T Consensus       237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~  313 (423)
T PRK14966        237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTD  313 (423)
T ss_pred             cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccc
Confidence            33344433332 45677999999999999999987654 47899999999999999999999886  6999999873   


Q ss_pred             -----CCCccccccc
Q 021397          173 -----TFSLAPLRLL  182 (313)
Q Consensus       173 -----~~d~v~~D~~  182 (313)
                           .||.+..||.
T Consensus       314 l~~~~~FDLIVSNPP  328 (423)
T PRK14966        314 MPSEGKWDIIVSNPP  328 (423)
T ss_pred             cccCCCccEEEECCC
Confidence                 2566666643

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.90  E-value=1.3e-08  Score=96.98  Aligned_cols=130  Identities=8%  Similarity=0.105  Sum_probs=87.8

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++|..-  ....+....+..+||+|||+|..+.++|...+ ...++|+|+++.+++.+.+++.+.|+. |+.++++|+..
T Consensus       108 ~~d~~~--~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~  183 (390)
T PRK14121        108 ILDIDN--FLDFISKNQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARL  183 (390)
T ss_pred             cCCHHH--HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHH
Confidence            555442  23344556678999999999999999999875 478999999999999999999999996 79999999975


Q ss_pred             CCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          174 FSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +...+.+.+     .+.++-+.|+.   |....-    ..-.+...+..+.+.+           ++||.+...|.+
T Consensus       184 ll~~~~~~s-----~D~I~lnFPdP---W~KkrH----RRlv~~~fL~e~~RvL-----------kpGG~l~l~TD~  237 (390)
T PRK14121        184 LLELLPSNS-----VEKIFVHFPVP---WDKKPH----RRVISEDFLNEALRVL-----------KPGGTLELRTDS  237 (390)
T ss_pred             hhhhCCCCc-----eeEEEEeCCCC---ccccch----hhccHHHHHHHHHHHc-----------CCCcEEEEEEEC
Confidence            432112222     22333334553   522211    1112233344444444           569999999997

>PRK14968 putative methyltransferase; Provisional

Probab=98.90  E-value=2.1e-08  Score=86.01  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEe
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFV  168 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~-v~~~~  168 (313)
                      |.|..... +.++...+...++.+|||+|||+|..+..++..   ...|+++|+|+.+++.++++++..++.++ +.++.
T Consensus         4 ~~~~p~~~-~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
T PRK14968          4 EVYEPAED-SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR   79 (188)
T ss_pred             cccCcchh-HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe
Confidence            44444333 455556666688999999999999999999987   36899999999999999999998887533 88888


Q ss_pred             cCCC
Q 021397          169 ADGT  172 (313)
Q Consensus       169 ~D~~  172 (313)
                      +|..
T Consensus        80 ~d~~   83 (188)
T PRK14968         80 SDLF   83 (188)
T ss_pred             cccc
Confidence            8864

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.90  E-value=1.1e-08  Score=91.97  Aligned_cols=70  Identities=26%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRL  181 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~  181 (313)
                      .+.+|||+|||+|..+..+++..++ ..|+++|+++.+++.++++++..++. ++.++++|+.      .||.+..||
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~np  162 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNP  162 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECC
Confidence            3569999999999999999987653 68999999999999999999999985 7999999974      355555663

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.89  E-value=1.6e-08  Score=97.11  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..++..+++++|++|||+|||+|+.+..+++..+  .+|+|+|+|+.+++.++++++  ++  ++++...|...++    
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~----  226 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN----  226 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC----
Confidence            4466677889999999999999999999998753  689999999999999998874  33  4778888876542    


Q ss_pred             ccccCcccccccccc
Q 021397          180 RLLLDPGSCNSVLQE  194 (313)
Q Consensus       180 D~~l~~~s~sg~l~~  194 (313)
                       ..||.+.+.+++.+
T Consensus       227 -~~fD~Ivs~~~~eh  240 (383)
T PRK11705        227 -GQFDRIVSVGMFEH  240 (383)
T ss_pred             -CCCCEEEEeCchhh
Confidence             23443455555543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=3.5e-09  Score=92.13  Aligned_cols=121  Identities=16%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC--------------
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT--------------  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~--------------  173 (313)
                      +++|+.|+|+||+||||+..+++.++.++.|+|+|+.+-..           +. +|.++++|++.              
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~-~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IP-GVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CC-CceEEeeeccCccHHHHHHHHcCCC
Confidence            46799999999999999999999999888899999977542           11 35666666532              


Q ss_pred             -CCccccc--cc----------------cCcc-ccccccccccc-ccccccccchhHHH--HHHHHHHHHHhhhhhcccc
Q 021397          174 -FSLAPLR--LL----------------LDPG-SCNSVLQEKDD-TFREWTSRIPWKER--KRAVKARENAASKAIVRSE  230 (313)
Q Consensus       174 -~d~v~~D--~~----------------l~~~-s~sg~l~~~p~-~~~~w~~~~~~~~~--~~~~q~~~l~~~~~~~r~~  230 (313)
                       .|.|..|  |.                +... .+..++.+... +.+.++++......  .++.+..+...++..+|+.
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~  190 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKR  190 (205)
T ss_pred             CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCC
Confidence             2333333  10                0000 01112222222 56778777776543  3778888888999999999


Q ss_pred             CcceeEeecC
Q 021397          231 HPELIFYGRR  240 (313)
Q Consensus       231 ~~El~~~~k~  240 (313)
                      |+|+|++++.
T Consensus       191 S~E~y~v~~~  200 (205)
T COG0293         191 SREIYLVAKG  200 (205)
T ss_pred             CceEEEEEec
Confidence            9999999875

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.8e-08  Score=92.80  Aligned_cols=95  Identities=22%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             cCCeEEEecHHHHHHHHhc-CCCCCC-EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 021397           88 KQGKIYGIDAASGAAVSAL-NISAGD-HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR  165 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l-~~~~g~-~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~  165 (313)
                      .++.+.+....-.++-.++ ...... +|||+|||+|..++.++...++ ..|+|+|+|+.+++.+++|++++|+ .++.
T Consensus        86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~  163 (280)
T COG2890          86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-VRVL  163 (280)
T ss_pred             CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence            3455555555554444432 222223 7999999999999999998654 6999999999999999999999998 4677


Q ss_pred             EEecCCC-----CCCccccccccC
Q 021397          166 LFVADGT-----TFSLAPLRLLLD  184 (313)
Q Consensus       166 ~~~~D~~-----~~d~v~~D~~l~  184 (313)
                      ++.+|..     .||.+.++|-+.
T Consensus       164 ~~~~dlf~~~~~~fDlIVsNPPYi  187 (280)
T COG2890         164 VVQSDLFEPLRGKFDLIVSNPPYI  187 (280)
T ss_pred             EEeeecccccCCceeEEEeCCCCC
Confidence            7777752     588888885544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.86  E-value=2.7e-08  Score=90.15  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      .|..|.    -+.+......+.  +.++.+|||+|||+|..+..++.. +. ..|+|+|+|+.+++.+++|++.+++.++
T Consensus        97 afgtg~----h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~~~  170 (250)
T PRK00517         97 AFGTGT----HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVELN  170 (250)
T ss_pred             ccCCCC----CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            455555    233444444433  568999999999999988876653 43 4799999999999999999999988545


Q ss_pred             EEEEecCCCCCCcc
Q 021397          164 CRLFVADGTTFSLA  177 (313)
Q Consensus       164 v~~~~~D~~~~d~v  177 (313)
                      +.+..+|. .||.+
T Consensus       171 ~~~~~~~~-~fD~V  183 (250)
T PRK00517        171 VYLPQGDL-KADVI  183 (250)
T ss_pred             EEEccCCC-CcCEE
Confidence            66655554 44544

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=7.7e-09  Score=78.17  Aligned_cols=73  Identities=23%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             EEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397          115 LDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       115 LDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      ||+|||+|..+..+++.  +...|+++|+++.+++.++++....    ++.+..+|++.+++  .|..||.+.+.+++.+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~--~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF--PDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS---TT-EEEEEEESHGGG
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc--ccccccccccccceee
Confidence            89999999999999997  3479999999999999999876543    45699999988864  3566666677776654


Q ss_pred             c
Q 021397          195 K  195 (313)
Q Consensus       195 ~  195 (313)
                      -
T Consensus        73 ~   73 (95)
T PF08241_consen   73 L   73 (95)
T ss_dssp             S
T ss_pred             c
Confidence            3

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.84  E-value=7.8e-09  Score=96.86  Aligned_cols=66  Identities=14%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..+...++.+|||+|||+|..++.+++.   ...|+|+|+++.+++.+++|++.+++. +++++++|+..
T Consensus       167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~  232 (315)
T PRK03522        167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQ  232 (315)
T ss_pred             HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHH
Confidence            3444446789999999999999999984   368999999999999999999999984 79999999854

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.84  E-value=3.1e-08  Score=87.87  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV  191 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~  191 (313)
                      ++|||+|||+|+.+..+++..+ ...|+++|+|+.+++.++++++..|+.++++++..|....+.   ...||.+.+..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehHHH
Confidence            3799999999999999998864 368999999999999999999999988789999999854332   223555566666


Q ss_pred             ccccc
Q 021397          192 LQEKD  196 (313)
Q Consensus       192 l~~~p  196 (313)
                      +.+.+
T Consensus        77 l~~~~   81 (224)
T smart00828       77 IHHIK   81 (224)
T ss_pred             HHhCC
Confidence            55443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.84  E-value=1.7e-08  Score=100.28  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRLLL  183 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~~l  183 (313)
                      ++.+|||+|||+|..++.++...++ .+|+|+|+|+.+++.+++|++++++.+++.++.+|+.      .||.+.+||-+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence            4568999999999999999987653 7999999999999999999999998768999999863      47777777443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.9e-08  Score=85.87  Aligned_cols=91  Identities=20%  Similarity=0.115  Sum_probs=68.3

Q ss_pred             cCCeEEEecHHHHHHHH--hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 021397           88 KQGKIYGIDAASGAAVS--ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR  165 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~--~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~  165 (313)
                      .+-|-.+-+.++.++..  ..+.-.|..|+|+|||+|..++..+-+ + ..+|+|+|+++++++.+++|+.+++  +++.
T Consensus        21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l~--g~v~   96 (198)
T COG2263          21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEELL--GDVE   96 (198)
T ss_pred             ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhhC--CceE
Confidence            33344444556655433  345667889999999999999877654 4 3699999999999999999999944  3799


Q ss_pred             EEecCCCCCC----ccccccc
Q 021397          166 LFVADGTTFS----LAPLRLL  182 (313)
Q Consensus       166 ~~~~D~~~~d----~v~~D~~  182 (313)
                      ++.+|++.|+    .+..||-
T Consensus        97 f~~~dv~~~~~~~dtvimNPP  117 (198)
T COG2263          97 FVVADVSDFRGKFDTVIMNPP  117 (198)
T ss_pred             EEEcchhhcCCccceEEECCC
Confidence            9999998764    3455655

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.83  E-value=3.3e-08  Score=91.39  Aligned_cols=81  Identities=22%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD  184 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~  184 (313)
                      .+...++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++++..++  ++++...|+...+.   +..||
T Consensus       115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~---~~~fD  186 (287)
T PRK12335        115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI---QEEYD  186 (287)
T ss_pred             HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc---cCCcc
Confidence            333334569999999999999999884   36899999999999999999999888  58888888765432   44455


Q ss_pred             ccccccccc
Q 021397          185 PGSCNSVLQ  193 (313)
Q Consensus       185 ~~s~sg~l~  193 (313)
                      .+.+..++.
T Consensus       187 ~I~~~~vl~  195 (287)
T PRK12335        187 FILSTVVLM  195 (287)
T ss_pred             EEEEcchhh
Confidence            556665553

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.82  E-value=3.4e-08  Score=89.14  Aligned_cols=78  Identities=10%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .....+++..++......+||++|++.|.-|+++|..++..|+|+++|+++.+.+.+++++++.|+.++|+++.+|+.
T Consensus        64 ~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         64 SADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            345667776666666677999999999999999999988789999999999999999999999999889999999873

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.82  E-value=3.4e-08  Score=87.17  Aligned_cols=55  Identities=27%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +++|.+|||+|||||.++..+++..+..+.|+|+|+++ +          .... +++++++|+...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~  103 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDE  103 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCCh
Confidence            46789999999999999999999987778999999998 1          1233 588999998764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.81  E-value=4.7e-08  Score=84.82  Aligned_cols=75  Identities=24%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..-|. +..++..-++.++||+|||.|..+..+|++   +-.|+|+|+|+..++.+++.+++.++  .|+....|...++
T Consensus        17 ~~hs~-v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~   90 (192)
T PF03848_consen   17 PTHSE-VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFD   90 (192)
T ss_dssp             ---HH-HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS
T ss_pred             CCcHH-HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcc
Confidence            33444 445566667789999999999999999985   36899999999999999999999998  4999999987765


Q ss_pred             c
Q 021397          176 L  176 (313)
Q Consensus       176 ~  176 (313)
                      .
T Consensus        91 ~   91 (192)
T PF03848_consen   91 F   91 (192)
T ss_dssp             -
T ss_pred             c
Confidence            4

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.80  E-value=2.8e-08  Score=86.88  Aligned_cols=67  Identities=19%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +++|+.|+|++||-|.+++.+|+.. +...|+|+|+++..++.+++|++.+++.+++.++++|+..+.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~  165 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL  165 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence            6789999999999999999999853 346899999999999999999999999988999999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=5.6e-08  Score=89.05  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--  172 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--  172 (313)
                      -|..|.++..-+....+.+|||+|||.|..++.+++..+ ..+|+-+|+|...++.+++|++.+++. +..+...|..  
T Consensus       143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~  220 (300)
T COG2813         143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP  220 (300)
T ss_pred             cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc
Confidence            388999999999888888999999999999999999876 589999999999999999999999986 4466666652  


Q ss_pred             ---CCCccccccccC
Q 021397          173 ---TFSLAPLRLLLD  184 (313)
Q Consensus       173 ---~~d~v~~D~~l~  184 (313)
                         .||.|..+|-|.
T Consensus       221 v~~kfd~IisNPPfh  235 (300)
T COG2813         221 VEGKFDLIISNPPFH  235 (300)
T ss_pred             ccccccEEEeCCCcc
Confidence               477777776643

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.78  E-value=8.1e-08  Score=84.53  Aligned_cols=89  Identities=22%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+...++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++..   ...++.++.+|+...+.  .+
T Consensus        30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~--~~  104 (223)
T TIGR01934        30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF--ED  104 (223)
T ss_pred             HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC--CC
Confidence            34455556688999999999999999999887544689999999999999998875   22368899999876552  12


Q ss_pred             cccCcccccccccc
Q 021397          181 LLLDPGSCNSVLQE  194 (313)
Q Consensus       181 ~~l~~~s~sg~l~~  194 (313)
                      ..+|.+.++..++.
T Consensus       105 ~~~D~i~~~~~~~~  118 (223)
T TIGR01934       105 NSFDAVTIAFGLRN  118 (223)
T ss_pred             CcEEEEEEeeeeCC
Confidence            33444455555543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.78  E-value=9.4e-08  Score=84.66  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.++.+|||+|||+|..+..++..   ...|+|+|+|+.+++.+++++...+..+++.+.++|+...+
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC  117 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence            567899999999999999999874   35899999999999999999988776557999999987654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK06922 hypothetical protein; Provisional

Probab=98.77  E-value=7.7e-08  Score=96.63  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL  182 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~  182 (313)
                      ...++..++.+|||+|||+|..+..+++..+ .+.|+|+|+|+.|++.+++++...+.  ++.++++|+..++..+-+..
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeS  487 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKES  487 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCC
Confidence            3455666789999999999999999998765 47999999999999999998776664  68889999876542222333


Q ss_pred             cCccccccccc
Q 021397          183 LDPGSCNSVLQ  193 (313)
Q Consensus       183 l~~~s~sg~l~  193 (313)
                      ||.+.++.+++
T Consensus       488 FDvVVsn~vLH  498 (677)
T PRK06922        488 VDTIVYSSILH  498 (677)
T ss_pred             EEEEEEchHHH
Confidence            44444444443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.75  E-value=1.2e-07  Score=87.64  Aligned_cols=79  Identities=18%  Similarity=0.291  Sum_probs=60.8

Q ss_pred             cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      .|-+|.    .+...+...++.  ..+|++|||+|||+|..+..+++. + ..+|+|+|+++.+++.+++|++.+++.++
T Consensus       137 aFgtG~----h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~  210 (288)
T TIGR00406       137 AFGTGT----HPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDR  210 (288)
T ss_pred             cccCCC----CHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence            355554    345555544443  567899999999999999887764 3 36899999999999999999999998766


Q ss_pred             EEEEecC
Q 021397          164 CRLFVAD  170 (313)
Q Consensus       164 v~~~~~D  170 (313)
                      +.+...|
T Consensus       211 ~~~~~~~  217 (288)
T TIGR00406       211 LQVKLIY  217 (288)
T ss_pred             eEEEecc
Confidence            7776665

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.75  E-value=3.7e-08  Score=96.48  Aligned_cols=67  Identities=22%  Similarity=0.268  Sum_probs=59.2

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +...+.+.+|++|||+|||+|..++.+++..   ..|+|+|+|+.+++.+++|++.+++. +++++++|+.
T Consensus       289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~  355 (443)
T PRK13168        289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLE  355 (443)
T ss_pred             HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChH
Confidence            3445667889999999999999999999863   58999999999999999999999986 6999999974

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.74  E-value=1.7e-08  Score=85.25  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..|+|+|||-||-|+++|+..   .+|+|+|+++.+++.+++|++-+|+.++|+++++|..
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~   58 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFF   58 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HH
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHH
Confidence            369999999999999999863   4799999999999999999999999889999999974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.73  E-value=1.4e-07  Score=87.00  Aligned_cols=65  Identities=15%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             CCCEEEEECCCcChHHHHH-HHHhCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCcEEEEecCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMI-LDIIGDSGSVTGVDVARHRLAACRTLLQK-YALGDRCRLFVADGTTF  174 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~l-a~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~~~~v~~~~~D~~~~  174 (313)
                      ++++|+|+|||||+.|..+ +....++++++++|+++.+++.+++++++ .|+.+++++..+|+...
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~  189 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV  189 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence            6789999999999875544 43444568999999999999999999965 88887899999998654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.72  E-value=6.1e-08  Score=86.09  Aligned_cols=94  Identities=18%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             EEecHHHHHHHHhcCC---CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           93 YGIDAASGAAVSALNI---SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        93 ~~Qd~ss~~~~~~l~~---~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      .+|...+..+...+..   ..+.+|||+|||+|..+..+++..+ ...++++|+++.+++.+++++.     .++.++.+
T Consensus        14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~   87 (240)
T TIGR02072        14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICG   87 (240)
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEec
Confidence            3566555555554442   3457999999999999999999864 4679999999999998886643     26888999


Q ss_pred             CCCCCCccccccccCcccccccccc
Q 021397          170 DGTTFSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       170 D~~~~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      |+...+.  .+..||.+.+..++..
T Consensus        88 d~~~~~~--~~~~fD~vi~~~~l~~  110 (240)
T TIGR02072        88 DAEKLPL--EDSSFDLIVSNLALQW  110 (240)
T ss_pred             chhhCCC--CCCceeEEEEhhhhhh
Confidence            9876653  2345665566666543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.71  E-value=1e-07  Score=82.50  Aligned_cols=57  Identities=32%  Similarity=0.426  Sum_probs=46.3

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ...+++|++|||+|||||+.+..+++.....++|+++|+|+.+           ... +++++++|+..
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~   83 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTD   83 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCC
Confidence            3456789999999999999999999987656789999999865           122 57788888754

>TIGR03438 probable methyltransferase

Probab=98.69  E-value=2.3e-07  Score=86.45  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .++.+|||+|||+|.+|..+++.+.....++++|+|+.||+.+++++......-++..+++|+..
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            46789999999999999999998753468999999999999999988764322257788999865

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.66  E-value=6.5e-08  Score=92.00  Aligned_cols=68  Identities=22%  Similarity=0.327  Sum_probs=52.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +..++++.++ .|||++||.|.+|+.+|+..   .+|+|+|+++.+++.|++|++.+++. |++++.+++..+
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~  256 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch
Confidence            4556777766 89999999999999999753   68999999999999999999999996 799998887543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.66  E-value=1.1e-07  Score=88.00  Aligned_cols=75  Identities=20%  Similarity=0.357  Sum_probs=58.3

Q ss_pred             cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      +|-+|.    -+..+++..++.  ..+|++|||+|||+|-.++..+.+ + ..+|+|+|+++..++.+++|++.+|+.++
T Consensus       139 AFGTG~----H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~  212 (295)
T PF06325_consen  139 AFGTGH----HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDR  212 (295)
T ss_dssp             SS-SSH----CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred             cccCCC----CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence            456664    455666666654  578999999999999999887765 4 36899999999999999999999999876


Q ss_pred             EEE
Q 021397          164 CRL  166 (313)
Q Consensus       164 v~~  166 (313)
                      +.+
T Consensus       213 ~~v  215 (295)
T PF06325_consen  213 IEV  215 (295)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=2.2e-07  Score=83.52  Aligned_cols=62  Identities=23%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+..+||+|||+|..++.++..++ ++.|+|+|.|+.++..+.+|++++++.+++.+++.+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me  209 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME  209 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence            456899999999999999999888 68999999999999999999999999999999877653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.64  E-value=3.4e-07  Score=90.41  Aligned_cols=94  Identities=19%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |......+...+.+.++.+|||+|||+|..+..+++..   .+|+|+|+++.+++.+++.   .+...++.++++|+...
T Consensus        22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~   95 (475)
T PLN02336         22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSP   95 (475)
T ss_pred             CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEeccccc
Confidence            33444555667777788899999999999999999863   5899999999999876542   22224789999998643


Q ss_pred             CccccccccCcccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~  194 (313)
                      +....+..||.+.|..++.+
T Consensus        96 ~~~~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         96 DLNISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             ccCCCCCCEEEEehhhhHHh
Confidence            32222344555566665543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.64  E-value=1.4e-07  Score=87.42  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..+......++..+++.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...+..++++++.+|+
T Consensus        18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3344445566777888999999999999999999999986   2579999999999999999998877545899999999


Q ss_pred             CCCC
Q 021397          172 TTFS  175 (313)
Q Consensus       172 ~~~d  175 (313)
                      ..++
T Consensus        95 l~~~   98 (294)
T PTZ00338         95 LKTE   98 (294)
T ss_pred             hhhc
Confidence            6544

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.5e-07  Score=91.51  Aligned_cols=68  Identities=19%  Similarity=0.294  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +..+++..++++|||+-||.|++|+.+|+.   ..+|+|+|+++.+++.+++|++.+|+. |+++..+|+..
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~  352 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEE  352 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHH
Confidence            556677888999999999999999999964   368999999999999999999999997 59999999854

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.64  E-value=1.7e-07  Score=88.45  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..+++..+. ..|+++|+|+.+++.++++..   . .+++++.+|+..+++  .+..||.+.+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~-~~i~~i~gD~e~lp~--~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---L-KECKIIEGDAEDLPF--PTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---c-cCCeEEeccHHhCCC--CCCceeEEEE
Confidence            46789999999999999999887653 689999999999999998754   2 257889999876553  1334454456


Q ss_pred             cccccccc
Q 021397          189 NSVLQEKD  196 (313)
Q Consensus       189 sg~l~~~p  196 (313)
                      .++++..+
T Consensus       185 ~~~L~~~~  192 (340)
T PLN02490        185 AGSIEYWP  192 (340)
T ss_pred             cChhhhCC
Confidence            66554433

>PHA03411 putative methyltransferase; Provisional

Probab=98.63  E-value=2.3e-07  Score=84.46  Aligned_cols=71  Identities=18%  Similarity=0.225  Sum_probs=55.6

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC------CCcccc
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT------FSLAPL  179 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~------~d~v~~  179 (313)
                      +.++++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++     . +++++++|+..      ||.+++
T Consensus        60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~~~kFDlIIs  132 (279)
T PHA03411         60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFESNEKFDVVIS  132 (279)
T ss_pred             hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcccCCCcEEEE
Confidence            3456678999999999999999888753 368999999999999998763     2 57888998854      555666


Q ss_pred             cccc
Q 021397          180 RLLL  183 (313)
Q Consensus       180 D~~l  183 (313)
                      ||.|
T Consensus       133 NPPF  136 (279)
T PHA03411        133 NPPF  136 (279)
T ss_pred             cCCc
Confidence            6553

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=2.1e-07  Score=79.27  Aligned_cols=127  Identities=19%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcC------------------CHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV------------------ARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~------------------s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      ++|+++|||+||+||.|+....++.++.|.|.++|+                  ++.....+.+.+   .- -.+.++..
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~l---p~-r~VdvVlS  142 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEAL---PN-RPVDVVLS  142 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhC---CC-CcccEEEe
Confidence            357999999999999999999999988899999996                  333333333333   22 25777878


Q ss_pred             CCCC----CCc----cccccc---cCccccccccccccc-ccccccccchhHHHH--HHHHHHHHHhhhhhccccCccee
Q 021397          170 DGTT----FSL----APLRLL---LDPGSCNSVLQEKDD-TFREWTSRIPWKERK--RAVKARENAASKAIVRSEHPELI  235 (313)
Q Consensus       170 D~~~----~d~----v~~D~~---l~~~s~sg~l~~~p~-~~~~w~~~~~~~~~~--~~~q~~~l~~~~~~~r~~~~El~  235 (313)
                      |+..    +..    ..++-|   +.  ...-....+.. +.|.|.++....+.+  ...+..+..-++++.|.+|.|.|
T Consensus       143 DMapnaTGvr~~Dh~~~i~LC~s~l~--~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y  220 (232)
T KOG4589|consen  143 DMAPNATGVRIRDHYRSIELCDSALL--FALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETY  220 (232)
T ss_pred             ccCCCCcCcchhhHHHHHHHHHHHHH--HhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCcccccccccee
Confidence            8743    110    011112   10  00001111111 678899888776543  66777777889999999999999


Q ss_pred             EeecC
Q 021397          236 FYGRR  240 (313)
Q Consensus       236 ~~~k~  240 (313)
                      ++|..
T Consensus       221 ~v~~~  225 (232)
T KOG4589|consen  221 LVCLN  225 (232)
T ss_pred             eeeee
Confidence            99765

>PRK06202 hypothetical protein; Provisional

Probab=98.63  E-value=1.4e-07  Score=84.36  Aligned_cols=89  Identities=18%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIG---DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ...+...++.+|||+|||+|..+..+++...   ...+|+|+|+|+.+++.++++....+    +.+...|+..++.  .
T Consensus        53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~--~  126 (232)
T PRK06202         53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA--E  126 (232)
T ss_pred             HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc--c
Confidence            3344446778999999999999999987653   23489999999999999988754333    4455555544442  2


Q ss_pred             ccccCccccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~  197 (313)
                      +..||.+.|+.++++-++
T Consensus       127 ~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        127 GERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             CCCccEEEECCeeecCCh
Confidence            456676688887766554

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.62  E-value=7.5e-08  Score=89.01  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=60.1

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +...+.+++|+.++|++||.||.|..+++..++.+.|+|+|.++.+++.++++++.  . ++++++++|..
T Consensus        11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-~ri~~i~~~f~   78 (296)
T PRK00050         11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-GRFTLVHGNFS   78 (296)
T ss_pred             HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-CcEEEEeCCHH
Confidence            55677889999999999999999999999987678999999999999999988865  2 47999998874

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.62  E-value=1.1e-08  Score=78.81  Aligned_cols=81  Identities=21%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             EEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397          115 LDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       115 LDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      ||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...+.. +......+............||.+.+.+++++
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            7999999999999999874 589999999999999999999888754 34444333222111000024555577777766


Q ss_pred             ccc
Q 021397          195 KDD  197 (313)
Q Consensus       195 ~p~  197 (313)
                      .++
T Consensus        79 l~~   81 (99)
T PF08242_consen   79 LED   81 (99)
T ss_dssp             -S-
T ss_pred             hhh
Confidence            543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.62  E-value=7.1e-07  Score=76.87  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCc--------EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG--------SVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~--------~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      .-|..++.+.++++|+.|||-+||+|+..+..+....+..        .++|.|+++++++.+++|++.+|+.+.+.+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            3345566778899999999999999999998887765433        38999999999999999999999987899999


Q ss_pred             cCCCCCC
Q 021397          169 ADGTTFS  175 (313)
Q Consensus       169 ~D~~~~d  175 (313)
                      .|++.++
T Consensus        95 ~D~~~l~  101 (179)
T PF01170_consen   95 WDARELP  101 (179)
T ss_dssp             --GGGGG
T ss_pred             cchhhcc
Confidence            9998766

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.62  E-value=2.2e-07  Score=82.86  Aligned_cols=85  Identities=15%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG--DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~--~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      +|.....+..++..   ...+.+|||+|||+|..+..+++.+.  ....|+|+|+++.+++.+++|+.      ++.++.
T Consensus        33 FfTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~  103 (241)
T PHA03412         33 FFTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWIN  103 (241)
T ss_pred             cCCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEE
Confidence            44455555544322   23478999999999999999998753  24689999999999999998752      467888


Q ss_pred             cCCC------CCCccccccccC
Q 021397          169 ADGT------TFSLAPLRLLLD  184 (313)
Q Consensus       169 ~D~~------~~d~v~~D~~l~  184 (313)
                      +|+.      .||.|..+|-|.
T Consensus       104 ~D~~~~~~~~~FDlIIsNPPY~  125 (241)
T PHA03412        104 ADALTTEFDTLFDMAISNPPFG  125 (241)
T ss_pred             cchhcccccCCccEEEECCCCC
Confidence            8874      366777775544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.62  E-value=7.3e-08  Score=86.19  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEecCCCCCCcccccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-----RCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-----~v~~~~~D~~~~d~v~~D~  181 (313)
                      .+..|.+|||+|||.|-.|.+||+.   +..|+|+|+++.+++.+++........+     ++++.+.|++.+-     +
T Consensus        86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~  157 (282)
T KOG1270|consen   86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----G  157 (282)
T ss_pred             cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----c
Confidence            3445789999999999999999986   3689999999999999998833322211     2444444544321     4


Q ss_pred             ccCccccccccccccc
Q 021397          182 LLDPGSCNSVLQEKDD  197 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~  197 (313)
                      +||.+.|+-++.|-.+
T Consensus       158 ~fDaVvcsevleHV~d  173 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKD  173 (282)
T ss_pred             ccceeeeHHHHHHHhC
Confidence            4666689888866543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.62  E-value=1e-07  Score=93.06  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +...+.+.++++|||+|||+|..++.+++..   ..|+|+|+++.+++.+++|++.+++. +++++.+|+.
T Consensus       284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~  350 (431)
T TIGR00479       284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLE  350 (431)
T ss_pred             HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHH
Confidence            3445567788999999999999999999863   58999999999999999999999985 7999999974

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.61  E-value=1.2e-07  Score=83.07  Aligned_cols=71  Identities=15%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCccccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLR  180 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D  180 (313)
                      .++.+|||+|||+|..++.++...  ..+|+++|+++..++.+++|++.+++. +++++++|+.        .||.+++|
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEEC
Confidence            568899999999999998655432  368999999999999999999999985 7999999873        25666666


Q ss_pred             cc
Q 021397          181 LL  182 (313)
Q Consensus       181 ~~  182 (313)
                      |-
T Consensus       129 PP  130 (199)
T PRK10909        129 PP  130 (199)
T ss_pred             CC
Confidence            44

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.61  E-value=1.7e-07  Score=85.97  Aligned_cols=62  Identities=13%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDS--GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .++.+|||+|||+|..+..+++..+..  ..|+|+|+|+.+++.++++.     . ++.+..+|+..+++
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp~  147 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLPF  147 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCCC
Confidence            456789999999999999999876532  37999999999999987542     2 57889999877653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=3.8e-07  Score=83.99  Aligned_cols=70  Identities=23%  Similarity=0.389  Sum_probs=58.4

Q ss_pred             cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      +|-+|.    -+...+..++++  .++|.+|||+|||+|-.++.++++ + ...|+|+|+++-.++.+++|++++++.
T Consensus       140 AFGTG~----HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~  211 (300)
T COG2264         140 AFGTGT----HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVE  211 (300)
T ss_pred             ccCCCC----ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCc
Confidence            455665    456667777765  568999999999999999988875 3 468999999999999999999999986

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.61  E-value=2e-07  Score=81.14  Aligned_cols=73  Identities=22%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.++-.+++. +.+.+-.+|.|+|||||..|..++++.+. ..|+|+|-|+.|++.+++.+     . ++++..+|...+
T Consensus        16 tRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl~~w   87 (257)
T COG4106          16 TRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----P-DATFEEADLRTW   87 (257)
T ss_pred             cCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----C-CCceecccHhhc
Confidence            4445455443 34566789999999999999999999875 79999999999999987543     2 688999998765


Q ss_pred             C
Q 021397          175 S  175 (313)
Q Consensus       175 d  175 (313)
                      .
T Consensus        88 ~   88 (257)
T COG4106          88 K   88 (257)
T ss_pred             C
Confidence            3

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=3e-07  Score=82.55  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=74.1

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      .+-..|.-|.+  ++...|++.||.+|++.|.|+|+.+..+++.+++.|+++..|++..|.+.+.+.+++.|+.++++++
T Consensus        85 RTQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~  162 (314)
T KOG2915|consen   85 RTQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT  162 (314)
T ss_pred             cceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence            44455555543  5677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q 021397          168 VADGT  172 (313)
Q Consensus       168 ~~D~~  172 (313)
                      +-|..
T Consensus       163 hrDVc  167 (314)
T KOG2915|consen  163 HRDVC  167 (314)
T ss_pred             Eeecc
Confidence            98875

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=4e-07  Score=80.09  Aligned_cols=79  Identities=8%  Similarity=0.075  Sum_probs=71.2

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +=+...+++..++......++||+|.-+|..++..|..++..|+|+++|+++...+...+..+..|..++|.++++++.
T Consensus        57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~  135 (237)
T KOG1663|consen   57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL  135 (237)
T ss_pred             cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence            3356677777777777788999999999999999999999999999999999999999999999999999999999884

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.60  E-value=1.5e-07  Score=86.32  Aligned_cols=73  Identities=21%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..-...++..+++.++++|||+|||+|..|..+++..   .+|+|+|+++.+++.+++++..    ++++++++|+..++
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~  100 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD  100 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC
Confidence            3344556677888999999999999999999999873   3899999999999999987642    37999999997655

>PRK05785 hypothetical protein; Provisional

Probab=98.59  E-value=2.6e-07  Score=82.56  Aligned_cols=75  Identities=17%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++..  .+.|+|+|+|++|++.+++.         ...+++|+..+++  .|..||.+.++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~--~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF--RDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC--CCCCEEEEEec
Confidence            47899999999999999998875  36899999999999998753         1246788887764  35667766887


Q ss_pred             cccccccc
Q 021397          190 SVLQEKDD  197 (313)
Q Consensus       190 g~l~~~p~  197 (313)
                      .++++.++
T Consensus       118 ~~l~~~~d  125 (226)
T PRK05785        118 FALHASDN  125 (226)
T ss_pred             ChhhccCC
Confidence            77765444

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.58  E-value=2.7e-07  Score=87.77  Aligned_cols=58  Identities=10%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+|||+|||+|.+++.+++..   ..|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence            479999999999999999864   48999999999999999999999986 69999999754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02672 methionine S-methyltransferase

Probab=98.57  E-value=3.7e-07  Score=96.92  Aligned_cols=91  Identities=18%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             cCCeEEEecHHHHHHHHhcCCC-----CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 021397           88 KQGKIYGIDAASGAAVSALNIS-----AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-  161 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~-----~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-  161 (313)
                      ..|-+.+.+.+-.+ ++.+...     ++.+|||+|||+|..++.+++..++ .+|+|+|+|+.+++.+++|+++++++ 
T Consensus        92 ~p~VLIPRpeTE~l-ve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~  169 (1082)
T PLN02672         92 IPSIFIPEDWSFTF-YEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDD  169 (1082)
T ss_pred             CCCcccCchhHHHH-HHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCccc
Confidence            34455555544444 4434422     2468999999999999999998754 69999999999999999999987542 


Q ss_pred             --------------CcEEEEecCCCC--------CCccccc
Q 021397          162 --------------DRCRLFVADGTT--------FSLAPLR  180 (313)
Q Consensus       162 --------------~~v~~~~~D~~~--------~d~v~~D  180 (313)
                                    ++++++++|...        ||.+..+
T Consensus       170 ~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN  210 (1082)
T PLN02672        170 DGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGC  210 (1082)
T ss_pred             ccccccccccccccccEEEEECchhhhccccCCceEEEEEC
Confidence                          469999999732        5666666

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.57  E-value=1.9e-07  Score=81.18  Aligned_cols=60  Identities=17%  Similarity=0.110  Sum_probs=54.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      +|.+|||+|||+|..++.++.+.  ...|+++|.++..++.+++|++.+++.++++++++|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~  108 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA  108 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence            58899999999999999999862  3589999999999999999999999876799999998

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.57  E-value=2.9e-07  Score=78.32  Aligned_cols=69  Identities=23%  Similarity=0.337  Sum_probs=59.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++..+++.++++|||+|||+|..|..+++.   .++|+|+|+++.+++.+++++..  . ++++++++|+..++
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~   72 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFD   72 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCC
Confidence            3556778889999999999999999999987   26899999999999999998854  2 37999999997765

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.55  E-value=8e-07  Score=78.90  Aligned_cols=79  Identities=18%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ..++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.+++++...+..+++.+..+|....     +..||.+.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~v~  132 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-----LGRFDTVV  132 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-----cCCcCEEE
Confidence            356789999999999999999875   2579999999999999999998888755789998884321     23455556


Q ss_pred             ccccccc
Q 021397          188 CNSVLQE  194 (313)
Q Consensus       188 ~sg~l~~  194 (313)
                      +..++.+
T Consensus       133 ~~~~l~~  139 (230)
T PRK07580        133 CLDVLIH  139 (230)
T ss_pred             Ecchhhc
Confidence            6665543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.55  E-value=8.1e-07  Score=79.26  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      .++...+.+.++.+|||+|||+|..+..+++.   ...|+++|+++.+++.+++++...+.  ++.++..|+..+... .
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~  111 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-H  111 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-c
Confidence            45555556678899999999999999988875   25799999999999999999888776  577887777654311 1


Q ss_pred             ccccCcccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p  196 (313)
                      +..||.+.++.++...+
T Consensus       112 ~~~fD~Ii~~~~l~~~~  128 (233)
T PRK05134        112 PGQFDVVTCMEMLEHVP  128 (233)
T ss_pred             CCCccEEEEhhHhhccC
Confidence            12344445655554433

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.54  E-value=1.3e-07  Score=81.78  Aligned_cols=72  Identities=29%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC-----------CCCCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-----------TTFSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~-----------~~~d~v~  178 (313)
                      +|.+|||++||+|..++..+.+  +...|+.||.++..+..+++|++..+..++++++..|+           ..||+++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence            7999999999999999988775  34689999999999999999999999987799999995           3578888


Q ss_pred             ccccc
Q 021397          179 LRLLL  183 (313)
Q Consensus       179 ~D~~l  183 (313)
                      +||-+
T Consensus       120 lDPPY  124 (183)
T PF03602_consen  120 LDPPY  124 (183)
T ss_dssp             E--ST
T ss_pred             ECCCc
Confidence            88653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.53  E-value=5.9e-07  Score=83.90  Aligned_cols=75  Identities=23%  Similarity=0.333  Sum_probs=62.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-CCCCCCc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-DGTTFSL  176 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~~~d~  176 (313)
                      -|...+.+..+++|+.|||=.||||+....+.- +|  ..++|+|++..|++-++.|++.+++. ...+... |++..++
T Consensus       185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G--~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl  260 (347)
T COG1041         185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MG--ARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL  260 (347)
T ss_pred             HHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cC--ceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC
Confidence            356677888899999999999999999876654 44  78999999999999999999999986 4655555 9987663

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.53  E-value=4.4e-07  Score=82.64  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.......++..+++.++++|||+|||+|..|..+++.   ...|+|+|+++.+++.++++++.  . ++++++++|+..
T Consensus        13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~   86 (258)
T PRK14896         13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALK   86 (258)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEecccc
Confidence            33444566777788889999999999999999999987   25899999999999999988754  2 379999999976


Q ss_pred             CC
Q 021397          174 FS  175 (313)
Q Consensus       174 ~d  175 (313)
                      ++
T Consensus        87 ~~   88 (258)
T PRK14896         87 VD   88 (258)
T ss_pred             CC
Confidence            54

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.52  E-value=7.8e-07  Score=78.74  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEEEEecCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------GDRCRLFVADGTTF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~~v~~~~~D~~~~  174 (313)
                      .++.+|||+|||.|.-+..+|++   +-.|+|+|+|+.+++.+.+.   .++              ..+|+++++|+..+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence            57789999999999999999974   36899999999999976432   221              12588899998776


Q ss_pred             C
Q 021397          175 S  175 (313)
Q Consensus       175 d  175 (313)
                      +
T Consensus       107 ~  107 (213)
T TIGR03840       107 T  107 (213)
T ss_pred             C
Confidence            5

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=3.8e-07  Score=85.54  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             cccccccCCeEEEecHHHHH-----------HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q 021397           82 ATSMAYKQGKIYGIDAASGA-----------AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA  150 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss~~-----------~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~  150 (313)
                      ..+-.-..|..+-.|.+..+           ++..  ..+|+.|+||.||-|.+|+.+|..-.  ..|+|+|+++..++.
T Consensus       151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~--v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~  226 (341)
T COG2520         151 TETIHRENGCRFKVDVAKVYFSPRLSTERARVAEL--VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEY  226 (341)
T ss_pred             ceEEEecCCEEEEEchHHeEECCCchHHHHHHHhh--hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHH
Confidence            44555567777778877422           2222  35699999999999999999998732  349999999999999


Q ss_pred             HHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          151 CRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       151 ~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +++|++.+++.+.+..+++|++.+..
T Consensus       227 L~eNi~LN~v~~~v~~i~gD~rev~~  252 (341)
T COG2520         227 LKENIRLNKVEGRVEPILGDAREVAP  252 (341)
T ss_pred             HHHHHHhcCccceeeEEeccHHHhhh
Confidence            99999999998779999999977654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.51  E-value=2.6e-07  Score=88.55  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=55.7

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++..++.+|||+|||+|..++.++..   ...|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus       229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~  292 (374)
T TIGR02085       229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAK  292 (374)
T ss_pred             HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHH
Confidence            44456789999999999999999964   358999999999999999999999986 79999999743

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04457 spermidine synthase; Provisional

Probab=98.50  E-value=1.2e-06  Score=80.12  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=53.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .++.+|||+|||.|..+..+++..+ ..+|+++|+++.+++.+++++...+..++++++.+|+.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~  127 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA  127 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence            4567999999999999999998875 47999999999999999998765544458999999984

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.50  E-value=4.6e-07  Score=84.77  Aligned_cols=79  Identities=16%  Similarity=0.081  Sum_probs=60.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEecCCCCCCccccccccCc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL----GDRCRLFVADGTTFSLAPLRLLLDP  185 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~~v~~~~~D~~~~d~v~~D~~l~~  185 (313)
                      +|.+|||+|||+|..+..+++.   ...|+|+|+|+.|++.++++++..+.    ..++++...|...+     +..||.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~  215 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT  215 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence            5789999999999999999974   35899999999999999999877532    12577888887543     334555


Q ss_pred             ccccccccccc
Q 021397          186 GSCNSVLQEKD  196 (313)
Q Consensus       186 ~s~sg~l~~~p  196 (313)
                      +.|..++.+.|
T Consensus       216 Vv~~~vL~H~p  226 (315)
T PLN02585        216 VTCLDVLIHYP  226 (315)
T ss_pred             EEEcCEEEecC
Confidence            57777765544

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.49  E-value=5.3e-07  Score=76.59  Aligned_cols=62  Identities=23%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|||+|||.|..-..|++.- =.+.++++|.|++.++.|+..+++.++.+.|++.+.|....
T Consensus        69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence            499999999999999998753 24569999999999999999999999987799999998753

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.49  E-value=4.1e-07  Score=79.47  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..+||+|||.|.+...+|...++ ..++|+|++..++..+.+.+.+.++. |+.++++|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHH
Confidence            38999999999999999998764 78999999999999999999999996 89999999976

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.49  E-value=3.7e-07  Score=80.28  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .+.++.+|||+|||+|..+..+++..+ ...++|+|+|+.+++.+++++     . ++.+..+|+.. +.  .+..||.+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~-~~--~~~sfD~V  109 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD-PF--KDNFFDLV  109 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC-CC--CCCCEEEE
Confidence            345678999999999999999988764 378999999999999998763     1 46677888765 22  24455555


Q ss_pred             cccccccc
Q 021397          187 SCNSVLQE  194 (313)
Q Consensus       187 s~sg~l~~  194 (313)
                      .+.+++.+
T Consensus       110 ~~~~vL~h  117 (204)
T TIGR03587       110 LTKGVLIH  117 (204)
T ss_pred             EECChhhh
Confidence            77777654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.48  E-value=1.1e-06  Score=77.71  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=58.4

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      ..+.+|||+|||+|..+..+++.   ...++++|+++.+++.+++++...+.. ++.+...|+..+.... +..+|.+.+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~D~i~~  118 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-AKSFDVVTC  118 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-CCCccEEEe
Confidence            35789999999999999988874   246999999999999999999887764 5888888876543211 123444445


Q ss_pred             cccc
Q 021397          189 NSVL  192 (313)
Q Consensus       189 sg~l  192 (313)
                      ..++
T Consensus       119 ~~~l  122 (224)
T TIGR01983       119 MEVL  122 (224)
T ss_pred             hhHH
Confidence            4444

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.47  E-value=1.2e-06  Score=80.11  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCCCEEEEECCCcCh----HHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHHHH------Hc----------------
Q 021397          109 SAGDHVLDLCAAPGA----KLCMILDIIGD----SGSVTGVDVARHRLAACRTLLQ------KY----------------  158 (313)
Q Consensus       109 ~~g~~VLDlcagpG~----kt~~la~~~~~----~~~V~avD~s~~~l~~~~~~~~------~~----------------  158 (313)
                      .++.+|||+|||+|.    .+..+++..+.    ..+|+|+|+|+.+++.+++.+-      ..                
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            355799999999996    45566665442    4689999999999999997531      00                


Q ss_pred             ----CCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397          159 ----ALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       159 ----g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~  194 (313)
                          .+.++|.+.++|+...+.  .+..||.+.|..++..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~y  215 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIY  215 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHh
Confidence                012367888888876543  2345666677666543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.47  E-value=1.1e-06  Score=75.65  Aligned_cols=84  Identities=25%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             HHHHHHHhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---
Q 021397           98 ASGAAVSALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---  172 (313)
Q Consensus        98 ss~~~~~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---  172 (313)
                      .-..+...+.+  -+|.++||++||+|+.++..+.+  +...++.+|.+...+..+++|++.+++..+++++..|+.   
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L  106 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL  106 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence            33344455655  47999999999999999998886  346899999999999999999999997778999999973   


Q ss_pred             -------CCCcccccccc
Q 021397          173 -------TFSLAPLRLLL  183 (313)
Q Consensus       173 -------~~d~v~~D~~l  183 (313)
                             .||+|++||-|
T Consensus       107 ~~~~~~~~FDlVflDPPy  124 (187)
T COG0742         107 KQLGTREPFDLVFLDPPY  124 (187)
T ss_pred             HhcCCCCcccEEEeCCCC
Confidence                   38888888664

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.46  E-value=5e-07  Score=86.27  Aligned_cols=59  Identities=10%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.+|||+|||+|.+|+.+++..   ..|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~  265 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEE  265 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHH
Confidence            3579999999999999998763   48999999999999999999999986 79999999743

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.46  E-value=5e-07  Score=78.07  Aligned_cols=91  Identities=19%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      |=|..-.+.+...|.-..-.++||+|||.|..|..||.+.   ..++|+|+|+..++.++++++..  . +|++.+.|..
T Consensus        26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dvp   99 (201)
T PF05401_consen   26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--P-HVEWIQADVP   99 (201)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TT
T ss_pred             HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcCC
Confidence            3344333444444544455789999999999999999874   58999999999999999887643  3 7999999986


Q ss_pred             CCCccccccccCcccccccc
Q 021397          173 TFSLAPLRLLLDPGSCNSVL  192 (313)
Q Consensus       173 ~~d~v~~D~~l~~~s~sg~l  192 (313)
                      .+.   .+..||.+.+|.++
T Consensus       100 ~~~---P~~~FDLIV~SEVl  116 (201)
T PF05401_consen  100 EFW---PEGRFDLIVLSEVL  116 (201)
T ss_dssp             T------SS-EEEEEEES-G
T ss_pred             CCC---CCCCeeEEEEehHh
Confidence            642   12344444555544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.44  E-value=1.7e-06  Score=83.00  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             HHHHHhcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------
Q 021397          100 GAAVSALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------  172 (313)
Q Consensus       100 ~~~~~~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------  172 (313)
                      .+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+++. +++++++|+.      
T Consensus        46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~  123 (382)
T PRK04338         46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEE  123 (382)
T ss_pred             HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhc
Confidence            3444444433 457999999999999999988764 358999999999999999999999986 5789999974      


Q ss_pred             -CCCcccccc
Q 021397          173 -TFSLAPLRL  181 (313)
Q Consensus       173 -~~d~v~~D~  181 (313)
                       .||.+.+||
T Consensus       124 ~~fD~V~lDP  133 (382)
T PRK04338        124 RKFDVVDIDP  133 (382)
T ss_pred             CCCCEEEECC
Confidence             355555554

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=6e-07  Score=87.05  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +-+.+++.++..++|+|||+|..++.+|+..   .+|+++++++..++-|+.|++.+|+. |++++++-++..--.++++
T Consensus       375 i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~  450 (534)
T KOG2187|consen  375 IGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP  450 (534)
T ss_pred             HHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc
Confidence            4566788889999999999999999999864   68999999999999999999999997 7999999666543334456


Q ss_pred             ccC
Q 021397          182 LLD  184 (313)
Q Consensus       182 ~l~  184 (313)
                      |++
T Consensus       451 ~~~  453 (534)
T KOG2187|consen  451 CCD  453 (534)
T ss_pred             CCC
Confidence            543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.41  E-value=3.1e-06  Score=75.24  Aligned_cols=63  Identities=14%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEEEEecCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------GDRCRLFVADGT  172 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~~v~~~~~D~~  172 (313)
                      .+.++.+|||+|||.|.-+..+|+.   +..|+|+|+|+..++.+.+   +.++              ..+|++.++|+.
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~  107 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF  107 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence            4456789999999999999999974   3689999999999998642   2222              236888899987


Q ss_pred             CCC
Q 021397          173 TFS  175 (313)
Q Consensus       173 ~~d  175 (313)
                      .++
T Consensus       108 ~l~  110 (218)
T PRK13255        108 ALT  110 (218)
T ss_pred             CCC
Confidence            663

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.40  E-value=1.4e-06  Score=72.51  Aligned_cols=84  Identities=23%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             HHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           98 ASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        98 ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      -+.++..+.. ..++.+|||+|||.|..+..+++.   ..+++++|+++.+++.         .  ++.....+....+ 
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~-   73 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPP-   73 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---------T--TSEEEEEECHTHH-
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhh-
Confidence            3445555554 567899999999999999999664   2489999999999987         1  2333333322111 


Q ss_pred             cccccccCccccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~p~  197 (313)
                       ..+..||.+.|..++.+.++
T Consensus        74 -~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   74 -FPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             -CHSSSEEEEEEESSGGGSSH
T ss_pred             -ccccchhhHhhHHHHhhccc
Confidence             12345555688888877765

...

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.37  E-value=3.8e-08  Score=84.57  Aligned_cols=129  Identities=22%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHH-----------------HHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-----------------LAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~-----------------l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ++.+|||+||||||+|..+.+..+..+.|+|+|+.+..                 .+.+++.+...+  ..++++..|+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~--~~~dlv~~D~~  100 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESG--EKFDLVLSDMA  100 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTT--CSESEEEE---
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccc--cCcceeccccc
Confidence            45899999999999999999987556899999998761                 111111111000  13444444441


Q ss_pred             CC-Cc-cccc------cccC-ccccccccccccc-ccccccccchhH--HHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397          173 TF-SL-APLR------LLLD-PGSCNSVLQEKDD-TFREWTSRIPWK--ERKRAVKARENAASKAIVRSEHPELIFYGRR  240 (313)
Q Consensus       173 ~~-d~-v~~D------~~l~-~~s~sg~l~~~p~-~~~~w~~~~~~~--~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~  240 (313)
                      .- .. ...|      -++. ...+...++.... +++.+.......  ....+.|..+...++..+|++++|+|+++++
T Consensus       101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~  180 (181)
T PF01728_consen  101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLVCRG  180 (181)
T ss_dssp             ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEESEE
T ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEEEcC
Confidence            10 00 0000      0000 0011112233332 445555433322  2235667777677888889999999998764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.36  E-value=4.4e-06  Score=62.75  Aligned_cols=60  Identities=27%  Similarity=0.376  Sum_probs=48.0

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +|+|+|||+|..+..+++  .....++++|+++..++.+++.....+. .++.++..|...+.
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   60 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELP   60 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhc
Confidence            489999999999999987  2357999999999999998865444444 36889988886654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.34  E-value=2e-06  Score=78.08  Aligned_cols=73  Identities=25%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ....++..+++.++++|||+|||+|..|..+++..   ..|+++|+++.+++.+++++..   ..+++++++|+..++.
T Consensus        17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~   89 (253)
T TIGR00755        17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL   89 (253)
T ss_pred             HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh
Confidence            34456667788899999999999999999999875   3599999999999999987643   2379999999987654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=1.1e-05  Score=68.58  Aligned_cols=121  Identities=13%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC------CCCCccccccccC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG------TTFSLAPLRLLLD  184 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~------~~~d~v~~D~~l~  184 (313)
                      ..-++++|||+|..+..+++..++.....|.|+++.+++...+.++.++.  ++++++.|.      .+.|.+.++|-++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence            56899999999999999999998878899999999999999999998887  588888886      3567778887777


Q ss_pred             cccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          185 PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       185 ~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +.++.-.-  ...+-..|.+...-.....    +++.....++.|           .|..+.-+|.
T Consensus       122 pt~~~~i~--~~~i~~a~aGG~~Gr~v~d----~ll~~v~~iLSp-----------~Gv~Ylv~~~  170 (209)
T KOG3191|consen  122 PTSDEEIG--DEGIASAWAGGKDGREVTD----RLLPQVPDILSP-----------RGVFYLVALR  170 (209)
T ss_pred             cCCcccch--hHHHHHHHhcCcchHHHHH----HHHhhhhhhcCc-----------CceEEeeehh
Confidence            65543221  2223345765433222211    222333444433           7777777776

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=1.1e-05  Score=74.20  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=59.3

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +...+..-.|.+|||+|||.|+.+..++..  +...|+|+|.+..-..+.+..-+-.|....+..+..-...++.   ..
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---~~  181 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---LG  181 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc---cC
Confidence            444454567999999999999999999876  3358999999998776654433334443223222112223332   34


Q ss_pred             ccCccccccccccccc
Q 021397          182 LLDPGSCNSVLQEKDD  197 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~  197 (313)
                      .||.+-|-|++.|..+
T Consensus       182 ~FDtVF~MGVLYHrr~  197 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRS  197 (315)
T ss_pred             CcCEEEEeeehhccCC
Confidence            5677789999876654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.25  E-value=2.8e-06  Score=75.77  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV  191 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~  191 (313)
                      -.+||+|||.|.+...+|+..++ ..++|+|+....+..+.+.+.+.++. |+.+++.||..+-..+++..    +.+++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~----sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDG----SLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCC----CeeEE
Confidence            47999999999999999999765 68999999999999999999999996 89999999976432222221    44555


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          192 LQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       192 l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .-.-||-   |-...-.+.+.  .|...+....+           ++++||.|...|=.
T Consensus       124 ~i~FPDP---WpKkRH~KRRl--~~~~fl~~~a~-----------~Lk~gG~l~~aTD~  166 (227)
T COG0220         124 YINFPDP---WPKKRHHKRRL--TQPEFLKLYAR-----------KLKPGGVLHFATDN  166 (227)
T ss_pred             EEECCCC---CCCcccccccc--CCHHHHHHHHH-----------HccCCCEEEEEecC
Confidence            5555664   43222211111  11111222223           34669999988854

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.25  E-value=3.9e-06  Score=78.55  Aligned_cols=73  Identities=19%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEe-cCC-----------CCCCc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFV-ADG-----------TTFSL  176 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~-~D~-----------~~~d~  176 (313)
                      ++.+|||+|||+|+....++.... ...++|+|+++..++.+++|++.+ ++.++|++.. .|.           ..||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            467999999999999999888765 378999999999999999999999 7877888764 222           24666


Q ss_pred             ccccccc
Q 021397          177 APLRLLL  183 (313)
Q Consensus       177 v~~D~~l  183 (313)
                      +..+|-|
T Consensus       193 ivcNPPf  199 (321)
T PRK11727        193 TLCNPPF  199 (321)
T ss_pred             EEeCCCC
Confidence            6677443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.21  E-value=4.9e-06  Score=79.61  Aligned_cols=69  Identities=12%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCcccccc
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~  181 (313)
                      -+|||+.||+|..++.++...++...|+++|+++..++.+++|++.+++. ++++++.|+.        .||++.+||
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            48999999999999999987544468999999999999999999999885 6899999974        478888886

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=6e-06  Score=74.74  Aligned_cols=73  Identities=25%  Similarity=0.323  Sum_probs=63.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA  177 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v  177 (313)
                      ...++..+++++++.||++|+|.|..|..|++..   ..|+|+|+++.+++.+++.+.   ..+|++++.+|+..+|+.
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence            4567888999999999999999999999999974   579999999999999998765   224899999999877653

>PRK10742 putative methyltransferase; Provisional

Probab=98.15  E-value=8.4e-06  Score=73.17  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCCCC--EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc------C--CCCcEEEEe
Q 021397           99 SGAAVSALNISAGD--HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY------A--LGDRCRLFV  168 (313)
Q Consensus        99 s~~~~~~l~~~~g~--~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g--~~~~v~~~~  168 (313)
                      .+.++.++++++|.  +|||+.||.|.-++.++.+   ++.|+++|.|+.....+++++++.      +  +..++++++
T Consensus        75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            46788999999998  9999999999999999986   367999999999999999999985      3  224789999


Q ss_pred             cCCC--------CCCcccccccc
Q 021397          169 ADGT--------TFSLAPLRLLL  183 (313)
Q Consensus       169 ~D~~--------~~d~v~~D~~l  183 (313)
                      +|+.        .||+|.+||-|
T Consensus       152 ~da~~~L~~~~~~fDVVYlDPMf  174 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYLDPMF  174 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEECCCC
Confidence            9872        57888889775

>TIGR00417 speE spermidine synthase

Probab=98.08  E-value=4.1e-05  Score=70.21  Aligned_cols=71  Identities=24%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCcEEEEecCCC--------CCCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL---GDRCRLFVADGT--------TFSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~~v~~~~~D~~--------~~d~v~  178 (313)
                      .+.+||++|||.|+.+..+++..+ ..+|+++|+++.+++.+++++...+.   ..+++++.+|+.        .||.+.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            345999999999999888877542 36899999999999999998865431   236888889873        466666


Q ss_pred             ccc
Q 021397          179 LRL  181 (313)
Q Consensus       179 ~D~  181 (313)
                      +|+
T Consensus       151 ~D~  153 (270)
T TIGR00417       151 VDS  153 (270)
T ss_pred             EeC
Confidence            663

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK00811 spermidine synthase; Provisional

Probab=98.07  E-value=3.7e-05  Score=71.01  Aligned_cols=63  Identities=24%  Similarity=0.363  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C--CCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L--GDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~--~~~v~~~~~D~~~  173 (313)
                      ...+|||+|||.|+.+..+++.. +..+|+++|+++.+++.+++.+...+  .  ..+++++.+|+..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~  142 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK  142 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH
Confidence            45799999999999999998753 34689999999999999999887643  1  3479999999853

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=3.4e-06  Score=69.16  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +--+|..++|+|||.|..++..+  +.....|+|+|+++..++...+|++...+  ++.++++|...
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdild  107 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILD  107 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccc
Confidence            33468999999999999995544  34446899999999999999999999988  57888888743

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.05  E-value=1.6e-05  Score=69.01  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEecCCCCCCcccccccc
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR-LFVADGTTFSLAPLRLLL  183 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~-~~~~D~~~~d~v~~D~~l  183 (313)
                      ++.......||++|||||..--..-.  .+...|+++|.+++|-+.+.+.++..... ++. ++.+|+++++-. .|...
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l-~d~s~  146 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL-ADGSY  146 (252)
T ss_pred             HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc-ccCCe
Confidence            34444445789999999987544432  14578999999999999999888777543 676 999999987732 35555


Q ss_pred             Cccccccccccccc
Q 021397          184 DPGSCNSVLQEKDD  197 (313)
Q Consensus       184 ~~~s~sg~l~~~p~  197 (313)
                      |.+.|+-++-...+
T Consensus       147 DtVV~TlvLCSve~  160 (252)
T KOG4300|consen  147 DTVVCTLVLCSVED  160 (252)
T ss_pred             eeEEEEEEEeccCC
Confidence            55566666555444

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.03  E-value=1.1e-05  Score=70.00  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC-CCccccccccCccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLDPGS  187 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-~d~v~~D~~l~~~s  187 (313)
                      +++++|||+|||+|..+..+++..  ...++++|+++.+++.++++        +++++.+|+.. ++. ..+..||.+.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~-~~~~sfD~Vi   80 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEA-FPDKSFDYVI   80 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccc-cCCCCcCEEE
Confidence            477899999999999998888653  25689999999999887531        35677788754 211 1234566667


Q ss_pred             cccccccccc
Q 021397          188 CNSVLQEKDD  197 (313)
Q Consensus       188 ~sg~l~~~p~  197 (313)
                      |..++++.++
T Consensus        81 ~~~~l~~~~d   90 (194)
T TIGR02081        81 LSQTLQATRN   90 (194)
T ss_pred             EhhHhHcCcC
Confidence            7777655443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.03  E-value=1.3e-05  Score=74.83  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHh------CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII------GDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~------~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      |.|+-=..-+.+++.++.++++.+|+|.|||+|++...+.+.+      .....++|+|+++..+..++-|+.-.|....
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            5555555667788889999999999999999999998888754      2347899999999999999988876665322


Q ss_pred             -EEEEecCCC---------CCCcccccccc
Q 021397          164 -CRLFVADGT---------TFSLAPLRLLL  183 (313)
Q Consensus       164 -v~~~~~D~~---------~~d~v~~D~~l  183 (313)
                       ..+..+|..         .||.++.+|-|
T Consensus       106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf  135 (311)
T PF02384_consen  106 NINIIQGDSLENDKFIKNQKFDVIIGNPPF  135 (311)
T ss_dssp             GCEEEES-TTTSHSCTST--EEEEEEE--C
T ss_pred             cccccccccccccccccccccccccCCCCc
Confidence             357788862         46666667554

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.02  E-value=8.4e-05  Score=65.51  Aligned_cols=66  Identities=26%  Similarity=0.356  Sum_probs=53.7

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.+++|.+||-+||++|..-.|+++..+..|.|+|||.|+...+.+-..+++..   ||..+.+|++..
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P  134 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHP  134 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSG
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCCh
Confidence            346789999999999999999999999988999999999988888776666653   799999999753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.00  E-value=2.9e-05  Score=68.03  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             CeEEEecHHHHHHHHhcCCCC--CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           90 GKIYGIDAASGAAVSALNISA--GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~--g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      -..++|-+-+.-+.++|++.+  ..-|||+|||+|-.+..+.+-   ....+++|||+.||+.+.+.  .+.    -.++
T Consensus        28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e----gdli   98 (270)
T KOG1541|consen   28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE----GDLI   98 (270)
T ss_pred             eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh----cCee
Confidence            457889998888888888776  678999999999998877652   35789999999999999862  222    1356


Q ss_pred             ecCCC
Q 021397          168 VADGT  172 (313)
Q Consensus       168 ~~D~~  172 (313)
                      .+|+-
T Consensus        99 l~DMG  103 (270)
T KOG1541|consen   99 LCDMG  103 (270)
T ss_pred             eeecC
Confidence            67763

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.99  E-value=2.8e-05  Score=70.15  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      -++...++++++.||++|-|||..|..|.+.   ..+|+|+|+++.|+..+.++.+.....+..+++.+|....|.-.+|
T Consensus        49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd  125 (315)
T KOG0820|consen   49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFD  125 (315)
T ss_pred             HHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccc
Confidence            3556677899999999999999999999986   3589999999999999999987776667899999999776654555


Q ss_pred             cc
Q 021397          181 LL  182 (313)
Q Consensus       181 ~~  182 (313)
                      -|
T Consensus       126 ~c  127 (315)
T KOG0820|consen  126 GC  127 (315)
T ss_pred             ee
Confidence            44

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=97.97  E-value=2e-05  Score=77.93  Aligned_cols=133  Identities=21%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHH-------------HHHHHHHHHHcCCCCcEEEEecCCCC-
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------------LAACRTLLQKYALGDRCRLFVADGTT-  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~-------------l~~~~~~~~~~g~~~~v~~~~~D~~~-  173 (313)
                      ++++..|||+||+||+|....++.|+-++.|+|+|+-+-.             -+.++..++..--.....++..|+.. 
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapn  121 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPN  121 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCc
Confidence            4678899999999999999999999988899999986533             12222222221111234567777642 


Q ss_pred             CCcc-ccc----cccCcc---ccccccccccc-ccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397          174 FSLA-PLR----LLLDPG---SCNSVLQEKDD-TFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRR  240 (313)
Q Consensus       174 ~d~v-~~D----~~l~~~---s~sg~l~~~p~-~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~  240 (313)
                      .... .-|    .||..-   ...+.+++... +-+.+....-.  .....+++.++....+...|..|.|+|++|..
T Consensus       122 Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~  199 (780)
T KOG1098|consen  122 VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLG  199 (780)
T ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeec
Confidence            1100 000    111100   00111111111 11222222211  23458999999999999999999999999875

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.97  E-value=3.6e-05  Score=72.59  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=74.7

Q ss_pred             HHHHHHHhcC----CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---------CCCcE
Q 021397           98 ASGAAVSALN----ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---------LGDRC  164 (313)
Q Consensus        98 ss~~~~~~l~----~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---------~~~~v  164 (313)
                      -|.++...+.    -.++.+|||||||-||-..=....  +-..++|+|++...++.++++.+...         ..-..
T Consensus        46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a  123 (331)
T PF03291_consen   46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA  123 (331)
T ss_dssp             HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred             HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence            3455555443    127899999999999987766553  45789999999999999999884321         11135


Q ss_pred             EEEecCCCCCC--ccccc--cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397          165 RLFVADGTTFS--LAPLR--LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR  240 (313)
Q Consensus       165 ~~~~~D~~~~d--~v~~D--~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~  240 (313)
                      .++.+|...-.  ..+.+  ..||.+||--.++..      |...        +.-..++.++...++|           
T Consensus       124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~------Fese--------~~ar~~l~Nvs~~Lk~-----------  178 (331)
T PF03291_consen  124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYA------FESE--------EKARQFLKNVSSLLKP-----------  178 (331)
T ss_dssp             EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGG------GSSH--------HHHHHHHHHHHHTEEE-----------
T ss_pred             heeccccccchhhhhccccCCCcceeehHHHHHHh------cCCH--------HHHHHHHHHHHHhcCC-----------
Confidence            67888875322  12223  366777887766542      1110        1112345667777765           


Q ss_pred             CcEEEEEcCC
Q 021397          241 SGIVGLTKEE  250 (313)
Q Consensus       241 gG~lvysTcs  250 (313)
                      ||+.+-+|-+
T Consensus       179 GG~FIgT~~d  188 (331)
T PF03291_consen  179 GGYFIGTTPD  188 (331)
T ss_dssp             EEEEEEEEE-
T ss_pred             CCEEEEEecC
Confidence            9988777655

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.96  E-value=1.4e-05  Score=68.99  Aligned_cols=76  Identities=24%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ++||.+|||+|||.|..-.++.+.  .+....|+|+++..+..+.++    |    +.++++|+..-=.-+.|..||.+.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VI   80 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVI   80 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEe
Confidence            468999999999999999888875  347899999999988766643    4    458999985311112245555556


Q ss_pred             cccccc
Q 021397          188 CNSVLQ  193 (313)
Q Consensus       188 ~sg~l~  193 (313)
                      .+.++.
T Consensus        81 lsqtLQ   86 (193)
T PF07021_consen   81 LSQTLQ   86 (193)
T ss_pred             hHhHHH
Confidence            666553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.89  E-value=9.7e-06  Score=70.88  Aligned_cols=83  Identities=13%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             ccCCeEEEecHH-HHHHHHhc-CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           87 YKQGKIYGIDAA-SGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        87 ~~~G~~~~Qd~s-s~~~~~~l-~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      ..+|++.+--+. +..++... ..-.-+.|+|..||-||-|++.|...   ..|+++|+++-++..+++|++-+|+.++|
T Consensus        69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rI  145 (263)
T KOG2730|consen   69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRI  145 (263)
T ss_pred             cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCcee
Confidence            356777765443 22222221 11145689999999999999998763   57999999999999999999999999999


Q ss_pred             EEEecCCC
Q 021397          165 RLFVADGT  172 (313)
Q Consensus       165 ~~~~~D~~  172 (313)
                      +++++|..
T Consensus       146 tFI~GD~l  153 (263)
T KOG2730|consen  146 TFICGDFL  153 (263)
T ss_pred             EEEechHH
Confidence            99999973

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.88  E-value=6.3e-05  Score=68.65  Aligned_cols=73  Identities=22%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA  177 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v  177 (313)
                      ...++..+++.++..|||+|+|+|..|..+++..   ..|+++|+++..++.+++.+.   ...+++++.+|+..++..
T Consensus        19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence            4557778889999999999999999999999874   689999999999999997654   234899999999887653

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.87  E-value=2.3e-05  Score=66.96  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      +.+.|+|+|+|-.+...|+..   -+|+|++.++++.+.+.+|+.-.|.. |++++.+|+..+++...|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~fe~AD   98 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDFENAD   98 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccccccc
Confidence            789999999999999888873   48999999999999999999777874 899999999998875555

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.85  E-value=0.00022  Score=65.19  Aligned_cols=87  Identities=18%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc-cccccccCcccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APLRLLLDPGSC  188 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~-v~~D~~l~~~s~  188 (313)
                      .-+|||++||+|.--+-+.+..+. ...|.-.|.|+.-++..++.++..|+.+.+++.++|+...+- ..++|.-..+..
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV  215 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV  215 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence            458999999999998877776654 358999999999999999999999998656999999865432 223443223355


Q ss_pred             ccccccccc
Q 021397          189 NSVLQEKDD  197 (313)
Q Consensus       189 sg~l~~~p~  197 (313)
                      ||...-.||
T Consensus       216 sGL~ElF~D  224 (311)
T PF12147_consen  216 SGLYELFPD  224 (311)
T ss_pred             ecchhhCCc
Confidence            665544443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.85  E-value=4.2e-05  Score=71.01  Aligned_cols=68  Identities=24%  Similarity=0.348  Sum_probs=59.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +..+|.+++|+.++|+-+|-||.|..+++.+++ |+|+|+|.++.+++.++++++.++  +++.+++++..
T Consensus        12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~   79 (305)
T TIGR00006        12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFA   79 (305)
T ss_pred             HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHH
Confidence            456778899999999999999999999998875 999999999999999999988764  47899988764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.84  E-value=9.2e-05  Score=73.81  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+..+||+|||.|.++..+|...++ ..++|+|++...+..+.+.+.+.++. |+.++..|+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~  408 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDL  408 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHH
Confidence            3568999999999999999998765 68999999999999999999999996 79998888654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=5.9e-05  Score=65.62  Aligned_cols=72  Identities=19%  Similarity=0.334  Sum_probs=60.0

Q ss_pred             HHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEE-EEEcCCHHHHHHHHHHHHHcCC---------CCcEEEEec
Q 021397          102 AVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSV-TGVDVARHRLAACRTLLQKYAL---------GDRCRLFVA  169 (313)
Q Consensus       102 ~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V-~avD~s~~~l~~~~~~~~~~g~---------~~~v~~~~~  169 (313)
                      +.+.|+  ++||.+.||+|+|+|+.|..++.+++..|.+ +++|..++.++..++|+.+.--         ..++.++.+
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            455676  8999999999999999999999888776664 9999999999999999987641         135778888


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |++.
T Consensus       152 Dgr~  155 (237)
T KOG1661|consen  152 DGRK  155 (237)
T ss_pred             Cccc
Confidence            8864

>PRK03612 spermidine synthase; Provisional

Probab=97.81  E-value=9.2e-05  Score=74.11  Aligned_cols=64  Identities=28%  Similarity=0.253  Sum_probs=49.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH--HHHc---CC-CCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL--LQKY---AL-GDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~--~~~~---g~-~~~v~~~~~D~~~  173 (313)
                      +++.+|||+|+|.|..+..+++. +...+|+++|+++++++.++++  +...   .+ +++++++.+|+..
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~  365 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN  365 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence            45679999999999999988874 3336999999999999999984  3222   12 2479999999853

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.81  E-value=0.0001  Score=72.19  Aligned_cols=66  Identities=20%  Similarity=0.254  Sum_probs=53.1

Q ss_pred             CCEEEEECCCcChHHHHHHHH---hCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          111 GDHVLDLCAAPGAKLCMILDI---IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~---~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +..|+|+|||+|-.+...++.   .+...+|+|+|.|+.+...+++.+++.+..++|+++.+|++.+..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC
Confidence            467999999999998665543   344569999999999999888888899998899999999998764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.81  E-value=0.00031  Score=66.77  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             cccccccCCeEEEecHH------HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC--------------------
Q 021397           82 ATSMAYKQGKIYGIDAA------SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS--------------------  135 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~s------s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~--------------------  135 (313)
                      +....++.||-.-+-.+      +..+..+.+.+++..++|--||+|...+..|.+..+-                    
T Consensus       157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l  236 (381)
T COG0116         157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL  236 (381)
T ss_pred             CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence            34467788876666555      2334455677888999999999999999888765321                    


Q ss_pred             -----------c-------EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          136 -----------G-------SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       136 -----------~-------~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                                 +       .++|+|+++.+++.|+.|+++.|+.+.|++.++|++.+.
T Consensus       237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~  294 (381)
T COG0116         237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK  294 (381)
T ss_pred             HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC
Confidence                       1       378999999999999999999999999999999998654

>PRK04148 hypothetical protein; Provisional

Probab=97.79  E-value=0.00012  Score=59.83  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .+...+....+.+|||+|||+|. .+..+++.   +..|+|+|+++.+++.++++    +    +.++.+|..+.+.
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~   72 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCH
Confidence            34444544467899999999997 66667653   36899999999988877654    2    5688888765543

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.77  E-value=2e-05  Score=70.37  Aligned_cols=40  Identities=33%  Similarity=0.385  Sum_probs=34.6

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA  150 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~  150 (313)
                      .+|..|||+|||||++|..+++. + ..+|+|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence            36789999999999999999986 3 4689999999988764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.76  E-value=9.7e-05  Score=65.66  Aligned_cols=48  Identities=19%  Similarity=0.211  Sum_probs=43.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      .+..+||+||-.|..|++||+..+. -.|+|+||++..++.|+++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence            3568999999999999999999875 57999999999999999998654

>PRK01581 speE spermidine synthase; Validated

Probab=97.75  E-value=0.00023  Score=67.49  Aligned_cols=69  Identities=23%  Similarity=0.295  Sum_probs=51.0

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH--H---HHcCC-CCcEEEEecCCCC--------CCc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL--L---QKYAL-GDRCRLFVADGTT--------FSL  176 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~--~---~~~g~-~~~v~~~~~D~~~--------~d~  176 (313)
                      ..+||++|+|.|+.+..+.+. ++..+|+++|+++.+++.+++.  +   .+..+ ..+++++.+|+..        ||+
T Consensus       151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            469999999999977777764 3346899999999999999962  1   12222 3589999999853        555


Q ss_pred             cccc
Q 021397          177 APLR  180 (313)
Q Consensus       177 v~~D  180 (313)
                      +.+|
T Consensus       230 IIvD  233 (374)
T PRK01581        230 IIID  233 (374)
T ss_pred             EEEc
Confidence            5555

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.72  E-value=0.00012  Score=59.88  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=49.9

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .|||+||+.|..+..+++..+ .++|+++|.++.+.+.++++++.+++. ++.++.....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence            489999999999999998754 469999999999999999999999885 5888776553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.66  E-value=5.8e-05  Score=66.75  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCcEEEEecCCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-GDRCRLFVADGT  172 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~~v~~~~~D~~  172 (313)
                      +....++.|++|||.|.|-|+.++..+++  +..+|+.++.++..++.+.-|==..++ ..+++++.+|+.
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~  195 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY  195 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence            44567888999999999999999988875  234899999999999887644211111 125789999973

>PLN02366 spermidine synthase

Probab=97.65  E-value=0.0004  Score=64.91  Aligned_cols=63  Identities=16%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~  172 (313)
                      ....+||++|+|.|+.+..+++. ++..+|+.+|+++.+++.+++.+...+  + +.+++++.+|+.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~  155 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV  155 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence            34679999999999999999876 434689999999999999999886542  2 248999999974

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.62  E-value=0.0003  Score=63.41  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ...++||+|||-|+.|..++....   +|+|.|.|+.|..+++    +.|.    +++..|  .+.-  .+..||.++|-
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~----~kg~----~vl~~~--~w~~--~~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLS----KKGF----TVLDID--DWQQ--TDFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHH----hCCC----eEEehh--hhhc--cCCceEEEeeh
Confidence            356899999999999999998764   6999999999876655    4454    233222  1211  12345566888


Q ss_pred             cccccccc
Q 021397          190 SVLQEKDD  197 (313)
Q Consensus       190 g~l~~~p~  197 (313)
                      .++.|..+
T Consensus       159 NvLDRc~~  166 (265)
T PF05219_consen  159 NVLDRCDR  166 (265)
T ss_pred             hhhhccCC
Confidence            77766543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.00056  Score=59.32  Aligned_cols=65  Identities=23%  Similarity=0.342  Sum_probs=55.8

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.+++|++||=+||++|....|++...+ .|.|+|++.|+.....+-..+++.   .|+-.+.+|++..
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P  136 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKP  136 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCc
Confidence            3467899999999999999999999998 699999999999888777776653   3788999999753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.59  E-value=0.00031  Score=72.76  Aligned_cols=92  Identities=15%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             cccccccCCeEEEecHHH------HHHHHhcCC-CCCCEEEEECCCcChHHHHHHHHhC---------------------
Q 021397           82 ATSMAYKQGKIYGIDAAS------GAAVSALNI-SAGDHVLDLCAAPGAKLCMILDIIG---------------------  133 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss------~~~~~~l~~-~~g~~VLDlcagpG~kt~~la~~~~---------------------  133 (313)
                      +..+.++.|+-..+.++.      ..+..+.+. +++..++|-+||+|...+..|....                     
T Consensus       155 sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~  234 (702)
T PRK11783        155 SGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDE  234 (702)
T ss_pred             CCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCH
Confidence            344556666644333332      222233344 5688999999999999988876421                     


Q ss_pred             --------------------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          134 --------------------DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       134 --------------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                                          ....|+|+|+++.+++.+++|++.+|+.+.+++.++|+..
T Consensus       235 ~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~  294 (702)
T PRK11783        235 ALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD  294 (702)
T ss_pred             HHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh
Confidence                                1236999999999999999999999998779999999854

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.55  E-value=0.001  Score=59.70  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-CCCcccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPL  179 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-~~d~v~~  179 (313)
                      .+....+..+..+|+|+|.|.|..+..+++..++ .+++..|. +..++.+++       .++|+++.+|.. .++.  .
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~  159 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--A  159 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--E
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--c
Confidence            3445667777789999999999999999999875 79999998 778887776       358999999985 2222  3


Q ss_pred             ccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCC--cEEEEEcCCCCCcccc
Q 021397          180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRS--GIVGLTKEEIYQSVCN  257 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~g--G~lvysTcs~~~p~En  257 (313)
                      |    ....+.+++       .|..+.         -..+|+++.++++|           |  |+|+....- +.+...
T Consensus       160 D----~~~l~~vLh-------~~~d~~---------~~~iL~~~~~al~p-----------g~~g~llI~e~~-~~~~~~  207 (241)
T PF00891_consen  160 D----VYLLRHVLH-------DWSDED---------CVKILRNAAAALKP-----------GKDGRLLIIEMV-LPDDRT  207 (241)
T ss_dssp             S----EEEEESSGG-------GS-HHH---------HHHHHHHHHHHSEE-----------CTTEEEEEEEEE-ECSSSS
T ss_pred             c----ceeeehhhh-------hcchHH---------HHHHHHHHHHHhCC-----------CCCCeEEEEeec-cCCCCC
Confidence            3    223344443       443311         23345566666655           7  888777665 444333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.55  E-value=0.00031  Score=57.98  Aligned_cols=63  Identities=19%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDII---GDSGSVTGVDVARHRLAACRTLLQKYA--LGDRCRLFVADG  171 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~---~~~~~V~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~  171 (313)
                      .+...|+|+|||-|..+..++..+   .....|+++|.++..++.+++..++.+  ...++.+..++.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   91 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI   91 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence            677899999999999999999944   234689999999999999999998887  433455555544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.53  E-value=0.00051  Score=64.24  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      -.+..|||+|||+|-.++..|+. | ..+|+|+|.|.-. +.+++.++.+++.+.|+++.+.+..+
T Consensus        59 f~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence            36889999999999999988876 3 4689999988766 89999999999988899999988765

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.53  E-value=0.00086  Score=59.83  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH------------HHcCCCCcEEEEecCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL------------QKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~------------~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+.++.+||+.|||.|.-+.+||+.   +-.|+|+|+|+..++.+.+..            .++. ..++++.++|...+
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l  115 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNL  115 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcCC
Confidence            3446789999999999999999985   357999999999999876521            0111 13689999998766


Q ss_pred             C
Q 021397          175 S  175 (313)
Q Consensus       175 d  175 (313)
                      +
T Consensus       116 ~  116 (226)
T PRK13256        116 P  116 (226)
T ss_pred             C
Confidence            4

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.51  E-value=0.00043  Score=63.97  Aligned_cols=93  Identities=22%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CC----cEEEEecCCC
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-GD----RCRLFVADGT  172 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~----~v~~~~~D~~  172 (313)
                      -|+++-..+  ++++.++|||||-||-.+-.-..  +-+.++|+||.+--+++++++.+.+.- ..    .+.++.+|-.
T Consensus       107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            467666655  67899999999999997766543  246899999999999999877664421 11    3678899875


Q ss_pred             CC---Cccccc-cccCcccccccccc
Q 021397          173 TF---SLAPLR-LLLDPGSCNSVLQE  194 (313)
Q Consensus       173 ~~---d~v~~D-~~l~~~s~sg~l~~  194 (313)
                      .-   +.+..+ |-||.+||.-.++-
T Consensus       183 ~~~l~d~~e~~dp~fDivScQF~~HY  208 (389)
T KOG1975|consen  183 KERLMDLLEFKDPRFDIVSCQFAFHY  208 (389)
T ss_pred             hhHHHHhccCCCCCcceeeeeeeEee
Confidence            32   222234 66888899877653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.48  E-value=0.00029  Score=62.66  Aligned_cols=51  Identities=16%  Similarity=0.107  Sum_probs=39.0

Q ss_pred             HHHHhcCCCCCC-EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397          101 AAVSALNISAGD-HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       101 ~~~~~l~~~~g~-~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  154 (313)
                      +.-.+....++. .++|+|||+|--+..+|+..   -+|+|+|+|+.||+.+++.
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcC
Confidence            444445555665 89999999996667777764   3699999999999987754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.48  E-value=0.00022  Score=66.85  Aligned_cols=56  Identities=29%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.+|+++||+||+|||+|..++++   +..|+|||..+     +...+..   ..+|+....|+..+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~~---~~~V~h~~~d~fr~  264 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLMD---TGQVEHLRADGFKF  264 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhhC---CCCEEEEeccCccc
Confidence            368999999999999999999986   35999999554     2222222   23788888887554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.44  E-value=0.00016  Score=69.29  Aligned_cols=72  Identities=22%  Similarity=0.228  Sum_probs=55.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecCCC--------CCCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-~v~~~~~D~~--------~~d~v~~D~  181 (313)
                      +-+|||.=||+|--++-.+..+++...|+++|+|++.++.+++|++.+++.+ ++++.+.|+.        .||+|-+||
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP  129 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP  129 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence            4589999999999999999887666799999999999999999999999986 6899999984        366666664


Q ss_pred             c
Q 021397          182 L  182 (313)
Q Consensus       182 ~  182 (313)
                      -
T Consensus       130 f  130 (377)
T PF02005_consen  130 F  130 (377)
T ss_dssp             S
T ss_pred             C
Confidence            3

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.43  E-value=7.2e-05  Score=65.99  Aligned_cols=44  Identities=25%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  154 (313)
                      ..+-.++||+|||+|-.+..|-.+.   ..++++|+|.+|++++.++
T Consensus       123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence            3345799999999999999888775   4799999999999988754

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.41  E-value=0.0011  Score=55.82  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +..+...++..|..||++|.|+|-.|-.+.++.-....++++|.|++-...+.+..   .   .+.++++|+...+
T Consensus        38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p---~~~ii~gda~~l~  107 (194)
T COG3963          38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---P---GVNIINGDAFDLR  107 (194)
T ss_pred             HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---C---CccccccchhhHH
Confidence            34445667888999999999999999999988766678999999999998887543   2   3668999987655

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.0011  Score=60.95  Aligned_cols=68  Identities=21%  Similarity=0.289  Sum_probs=62.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ++..|.++|+...+|.--|-||.|..+.+..+..++++|+|.++.+++.+++.+..++  +++.++++..
T Consensus        15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F   82 (314)
T COG0275          15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF   82 (314)
T ss_pred             HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence            5678899999999999999999999999999888899999999999999999998877  3788888765

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.28  E-value=0.00092  Score=59.46  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .++||.+||=|||++|..-.|++...++.+.|+|+|.|...=..+-..+++.   .||..+..|++..
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP  217 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHP  217 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCc
Confidence            4789999999999999999999999999999999999986544444333332   3788899999754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.00088  Score=59.17  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=28.5

Q ss_pred             CEEEEECCCcChHHHHHHHHhCC----Cc----EEEEEcCCHH
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGD----SG----SVTGVDVARH  146 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~----~~----~V~avD~s~~  146 (313)
                      .+|.|+||+||+|+..+++.+..    .+    .|+|||+.+.
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M   85 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM   85 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence            57999999999999999998743    22    3999998653

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.19  E-value=0.0015  Score=58.00  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH-c-----C-----CCCcEEEEecCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK-Y-----A-----LGDRCRLFVADGTTF  174 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~-----g-----~~~~v~~~~~D~~~~  174 (313)
                      +..+++.+||+.|||.|.-...+|+.   +-.|+|+|+|+..++.+.+.... .     +     -.++|+++++|...+
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            45678889999999999999999985   35899999999999988432111 0     0     013578999998765


Q ss_pred             C
Q 021397          175 S  175 (313)
Q Consensus       175 d  175 (313)
                      +
T Consensus       110 ~  110 (218)
T PF05724_consen  110 P  110 (218)
T ss_dssp             G
T ss_pred             C
Confidence            4

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.16  E-value=0.0014  Score=57.57  Aligned_cols=59  Identities=24%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      |.|+||--|.....|.+.- ...+++|+|+++.-++.++++++++|+.++|++..+|+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~   59 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE   59 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred             CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence            6899999999999999852 2347999999999999999999999999899999999743

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.08  E-value=0.0005  Score=63.93  Aligned_cols=68  Identities=24%  Similarity=0.353  Sum_probs=52.2

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +...|.++++..++|+--|.||.|..+.+..++ ++|+|+|.++.+++.++++++.+  .+++.+++++..
T Consensus        12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~   79 (310)
T PF01795_consen   12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS   79 (310)
T ss_dssp             HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred             HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence            556778999999999999999999999999887 99999999999999999887655  347888888764

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.05  E-value=0.00073  Score=52.55  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=16.7

Q ss_pred             EEECCCcChHHHHHHHHhCCCc--EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          115 LDLCAAPGAKLCMILDIIGDSG--SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       115 LDlcagpG~kt~~la~~~~~~~--~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      |++|++.|..|..+++.+...+  +++++|..+. .+..++.+++.++.++++++.+|..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~   59 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSP   59 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-TH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcH
Confidence            6899999999999998876544  7999999997 4556666666777778999999974

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.03  E-value=0.0014  Score=55.99  Aligned_cols=62  Identities=21%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--LGDRCRLFVADG  171 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~  171 (313)
                      ..++.+||++|||.|--++.++... ....|++.|.++ .++.++.|++.++  ...++.+...|-
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W  106 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW  106 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence            3468899999999999999888874 346899999999 9999999999876  445677776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02823 spermine synthase

Probab=97.02  E-value=0.0064  Score=57.50  Aligned_cols=69  Identities=17%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCcEEEEecCCC--------CCCcccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---LGDRCRLFVADGT--------TFSLAPL  179 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~~v~~~~~D~~--------~~d~v~~  179 (313)
                      ..+||-+|+|.|+.+..+.+..+ ..+|+++|+++..++.+++.+...+   -+.+++++.+|+.        .||++++
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            46899999999999988877533 3689999999999999998875432   1358999999984        3666666


Q ss_pred             c
Q 021397          180 R  180 (313)
Q Consensus       180 D  180 (313)
                      |
T Consensus       183 D  183 (336)
T PLN02823        183 D  183 (336)
T ss_pred             c
Confidence            6

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.01  E-value=0.0029  Score=54.73  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +++|+|+|.|-=++.+|=..+ ..+++-+|.+.+++.-++.-...+|+. |++++++.++.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc
Confidence            899999999999999988775 478999999999999999999999997 79999999877

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.00044  Score=67.19  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----------CCCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-----------TFSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----------~~d~  176 (313)
                      -.++-+|||.-||+|--++..|..+++-+.|+|+|.++..++..++|++.++..+.++....|+.           .||+
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV  186 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence            34567999999999999999999999888999999999999999999999988877888888873           5777


Q ss_pred             cccccc
Q 021397          177 APLRLL  182 (313)
Q Consensus       177 v~~D~~  182 (313)
                      |-+||-
T Consensus       187 IDLDPy  192 (525)
T KOG1253|consen  187 IDLDPY  192 (525)
T ss_pred             EecCCC
Confidence            777754

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.97  E-value=0.0023  Score=53.95  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             EEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCCCCCCccccccccCcccccccccccc
Q 021397          139 TGVDVARHRLAACRTLLQKYA--LGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       139 ~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +|+|+|+.|++.++++.+..+  ...+++++++|+..++.  .|..||.+.+..+++.-+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~fD~v~~~~~l~~~~   58 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--DDCEFDAVTMGYGLRNVV   58 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--CCCCeeEEEecchhhcCC
Confidence            489999999999987765332  22379999999988764  234566667666665433

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.96  E-value=0.0023  Score=64.12  Aligned_cols=59  Identities=17%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCC-------CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGD-------SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~-------~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      +.+|||.|||+|++...+++.+..       ...++|+|+++..+..++.++..++.. .+.+.+.|
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-~~~i~~~d   97 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL-EINVINFN   97 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC-Cceeeecc
Confidence            458999999999999999887631       246899999999999999999877621 24444444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.003  Score=55.82  Aligned_cols=64  Identities=16%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +.+++|+|+|+|-=++.+|=.. +...|+-+|...+|+.-++...+.+|++ |++++++.++.+..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQ  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhccc
Confidence            6899999999999999998444 4567999999999999999999999996 79999999887653

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.81  E-value=0.0054  Score=54.83  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             HHHHHhcCCCCCC--EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--C------CcEEEEec
Q 021397          100 GAAVSALNISAGD--HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--G------DRCRLFVA  169 (313)
Q Consensus       100 ~~~~~~l~~~~g~--~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~------~~v~~~~~  169 (313)
                      +.++.++++++|.  +|||+-+|-|.-++.+|.. |  ++|+++|.|+-....++.-++++.-  .      .+++++++
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence            5677788888875  8999999999999999964 4  6899999999988888877665521  1      37899999


Q ss_pred             CCC--------CCCccccccccC
Q 021397          170 DGT--------TFSLAPLRLLLD  184 (313)
Q Consensus       170 D~~--------~~d~v~~D~~l~  184 (313)
                      |+.        .+|.|.+||-|-
T Consensus       140 d~~~~L~~~~~s~DVVY~DPMFp  162 (234)
T PF04445_consen  140 DALEYLRQPDNSFDVVYFDPMFP  162 (234)
T ss_dssp             -CCCHCCCHSS--SEEEE--S--
T ss_pred             CHHHHHhhcCCCCCEEEECCCCC
Confidence            974        467778887754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.76  E-value=0.0036  Score=55.81  Aligned_cols=60  Identities=17%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             EEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +||++|||-|.....+.+..++ .-.|+|+|.|+.+++..+++.....  .++...+.|.+.-
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~  134 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP  134 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch
Confidence            8999999999999999887554 2589999999999999998865444  2566677776543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0027  Score=59.87  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=57.5

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC--------CCCCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------TTFSLAPLRL  181 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~--------~~~d~v~~D~  181 (313)
                      ..+|+|.-+|+|--++-+|...+.. +|+.+|+|++.++.+++|++.+... +..+++.|+        ..||+|-+||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiDP  129 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDIDP  129 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecCC
Confidence            6799999999999999999887754 8999999999999999999998443 577777887        3467666664

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.70  E-value=0.005  Score=57.36  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .|..|||+|||+|-.+...++.  +..+|+|++.| +|.+.+++.++.+.+.++|.++.+..+.+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi  238 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI  238 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc
Confidence            4678999999999999988875  34689999987 57788999988888888999998887654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.64  E-value=0.0031  Score=54.56  Aligned_cols=59  Identities=22%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .|.+|||+|+|+|--++..+..  +...|++.|+.+.....++-|++.+|.  .|.++..|..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLI  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc--eeEEeecccc
Confidence            4899999999999998877764  346899999999999999999999997  5888888764

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.48  E-value=0.031  Score=48.95  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.+||++|||+|-.+.++|+.++. -.-.-.|.++..+..++..++..++.+-...+.-|+..
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~   87 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA   87 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence            346999999999999999999975 67889999999999999988888876322345556554

The function of this family is unknown.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.47  E-value=0.0078  Score=53.03  Aligned_cols=62  Identities=15%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      +.+.++.|+||--|+....+.+... ...++|.|+++.-++.+.+++++.++.+++++..+|+
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg   76 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG   76 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC
Confidence            4567799999999999999988643 4689999999999999999999999999999999998

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.44  E-value=0.0086  Score=52.12  Aligned_cols=61  Identities=10%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC-------CCCcEEEEecCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA-------LGDRCRLFVADGTT  173 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-------~~~~v~~~~~D~~~  173 (313)
                      .-.+.|+|||-||....++.+.++ ..|+|.+|..+..+..+++++.++       .. |+.+...++..
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk  128 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMK  128 (249)
T ss_pred             cceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchh
Confidence            346899999999999999998875 689999999988888888877665       33 56777776644

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.41  E-value=0.012  Score=55.16  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--EecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRL--FVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~--~~~D~~  172 (313)
                      .++..++|+|||.|.||..+.+.+..   ...-+++|+|...|+.+.+++.....+ .+++  +++|..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~  142 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYD  142 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHH
Confidence            46779999999999999998887742   246899999999999999998733332 3444  777753

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.40  E-value=0.011  Score=52.02  Aligned_cols=61  Identities=23%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             cHHHHHHHHhcCCCCC---CEEEEECCCcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHH
Q 021397           96 DAASGAAVSALNISAG---DHVLDLCAAPGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g---~~VLDlcagpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~  156 (313)
                      ..+|.+....+...++   -+++|-|||.|+..+.+.-+-++. ..|+|.|+++++++.+++|+.
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            4567666666655443   489999999999988877654332 369999999999999999885

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.15  E-value=0.013  Score=58.21  Aligned_cols=81  Identities=14%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      |.||-=...+.+.+.++.|++..+|+|-|||+|+.-...++.++.   ...++|.|+++.....++-|+--+|+..++.+
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            777766677888999999999999999999999999998888853   36799999999999999999988888533445


Q ss_pred             EecC
Q 021397          167 FVAD  170 (313)
Q Consensus       167 ~~~D  170 (313)
                      ..+|
T Consensus       246 ~~~d  249 (489)
T COG0286         246 RHGD  249 (489)
T ss_pred             cccc
Confidence            5544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.14  E-value=0.031  Score=49.15  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC-CCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ-------KYAL-GDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~-------~~g~-~~~v~~~~~D~~~  173 (313)
                      +...+++.+++..+|+|||.|...+++|-..+ -.+.+|+|+.+...+.++...+       .+|. ..++++..+|...
T Consensus        34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            44667899999999999999999988887664 3569999999998777664433       3343 2367788888654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.09  E-value=0.0028  Score=60.69  Aligned_cols=64  Identities=16%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~-v~~~~~D~~~~  174 (313)
                      .++|+.|-|+|||-|-+++.++..   ...|+|+|.++++++.++.|++.+.+... |+++..||..|
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            468999999999999999998875   38999999999999999999988877655 89999998654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.04  E-value=0.013  Score=53.91  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      ..+|||+|||||.-+..+.+..+....++++|.|+.|++.++..++...
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            3689999999998888777777755689999999999999888776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.98  E-value=0.019  Score=51.88  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=55.4

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCcEEEEecCCC-------
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL---GDRCRLFVADGT-------  172 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~~v~~~~~D~~-------  172 (313)
                      +.++.+ ...+||=+|-|.|+.+..+.+.- ...+|+++|+++..++.+++-+.....   +.+++++.+|+.       
T Consensus        70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~  147 (246)
T PF01564_consen   70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ  147 (246)
T ss_dssp             HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred             HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence            334444 46799999999999999887653 236899999999999999987765432   258999999983       


Q ss_pred             --CCCccccc
Q 021397          173 --TFSLAPLR  180 (313)
Q Consensus       173 --~~d~v~~D  180 (313)
                        .||.+..|
T Consensus       148 ~~~yDvIi~D  157 (246)
T PF01564_consen  148 EEKYDVIIVD  157 (246)
T ss_dssp             ST-EEEEEEE
T ss_pred             CCcccEEEEe
Confidence              46666666

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.95  E-value=0.056  Score=49.91  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCC---
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGT---  172 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~---  172 (313)
                      ...++....+.| .+||=+|-|.|+.+..+.+... -.+++.|||++..++.+++-+....  . +.+++++..|+.   
T Consensus        66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v  143 (282)
T COG0421          66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL  143 (282)
T ss_pred             HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence            334555566677 6999999999999999998764 4689999999999999998876543  2 258999999983   


Q ss_pred             -----CCCccccc
Q 021397          173 -----TFSLAPLR  180 (313)
Q Consensus       173 -----~~d~v~~D  180 (313)
                           .||.+..|
T Consensus       144 ~~~~~~fDvIi~D  156 (282)
T COG0421         144 RDCEEKFDVIIVD  156 (282)
T ss_pred             HhCCCcCCEEEEc
Confidence                 36666666

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.89  E-value=0.016  Score=55.79  Aligned_cols=56  Identities=21%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      .|||+|+|+|-.+.+.+....  -.|+|++.-..|.+.+++...+.|..++|.++..-
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence            589999999999988887653  47999999999999999999999999899887543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.52  E-value=0.0076  Score=55.35  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=51.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .|+.|.||-||-|++|+...-..+ ...|+|+|.++..++.++++++.+++.++..++.+|-+.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~  256 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN  256 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence            368999999999999993333333 468999999999999999999999887777788888654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.46  E-value=0.056  Score=50.18  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=43.3

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVAD  170 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D  170 (313)
                      .-++||+|+|.-..-..|+.... +-.++|.|+++..++.|++|++++ ++.++|+++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence            45899999999887655555543 479999999999999999999999 898889987553

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.43  E-value=0.14  Score=48.50  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH--HHcC---C-CCcEEEEecCCC--------CC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL--QKYA---L-GDRCRLFVADGT--------TF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~--~~~g---~-~~~v~~~~~D~~--------~~  174 (313)
                      +...+||=+|-|-|--...+.+. +.-++|+-+|++|+|++.++++.  +..+   + +.+++++..|+.        .|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            44578999999998887777765 44579999999999999999543  3222   1 247899999984        46


Q ss_pred             Cccccc
Q 021397          175 SLAPLR  180 (313)
Q Consensus       175 d~v~~D  180 (313)
                      |.+.+|
T Consensus       367 D~vIVD  372 (508)
T COG4262         367 DVVIVD  372 (508)
T ss_pred             cEEEEe
Confidence            777666

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.33  E-value=0.012  Score=54.98  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHH-------HHHHHHHHcCCCC-cEEEEecC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA-------ACRTLLQKYALGD-RCRLFVAD  170 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~-------~~~~~~~~~g~~~-~v~~~~~D  170 (313)
                      |-+.+....++||+-|+|-..|+|+.-...|..   ++.|+|.||+-.++.       ..+.|++++|... -+.++.+|
T Consensus       197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D  273 (421)
T KOG2671|consen  197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD  273 (421)
T ss_pred             HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence            444555667899999999999999998877765   379999999988877       4678999999542 25677888


Q ss_pred             CCC--------CCccccccc
Q 021397          171 GTT--------FSLAPLRLL  182 (313)
Q Consensus       171 ~~~--------~d~v~~D~~  182 (313)
                      .++        ||.+..||-
T Consensus       274 ~sn~~~rsn~~fDaIvcDPP  293 (421)
T KOG2671|consen  274 FSNPPLRSNLKFDAIVCDPP  293 (421)
T ss_pred             ccCcchhhcceeeEEEeCCC
Confidence            754        556666644

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.32  E-value=0.34  Score=37.68  Aligned_cols=58  Identities=29%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++|+|||+|..+ .++........++++|+++.++...+......+.. .+.+...|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEecccc
Confidence            999999999988 55554432237999999999999855444332221 15777777654

>PHA01634 hypothetical protein

Probab=95.30  E-value=0.052  Score=43.90  Aligned_cols=49  Identities=8%  Similarity=-0.011  Sum_probs=42.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .+.+|+|+||+-|..++..+-.  +...|+|++.+++..+..+++++-+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhee
Confidence            4789999999999999998854  446899999999999999999877644

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.07  E-value=0.068  Score=49.46  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CEEEEECCCcChHH----HHHHHHhCC---CcEEEEEcCCHHHHHHHHHH
Q 021397          112 DHVLDLCAAPGAKL----CMILDIIGD---SGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       112 ~~VLDlcagpG~kt----~~la~~~~~---~~~V~avD~s~~~l~~~~~~  154 (313)
                      -+||.+||++|-=.    ..+.+..+.   ..+|+|.|+|+..++.|++.
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            59999999999643    333443322   35799999999999999865

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.00  E-value=0.014  Score=57.22  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEE---cCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGV---DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      .+||+|||.|+++..|.++   +..++++   |.++..++.+-    +-|+..-+.+  .-...+++  .|..||.+-|+
T Consensus       120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~--~~s~rLPf--p~~~fDmvHcs  188 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFAL----ERGVPAMIGV--LGSQRLPF--PSNAFDMVHCS  188 (506)
T ss_pred             EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhh----hcCcchhhhh--hccccccC--Cccchhhhhcc
Confidence            6899999999999999875   2233232   44444443332    2344311111  11123332  45566666676


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..+-       .|......                     -.-|+.++++|||+.|+|.=-
T Consensus       189 rc~i-------~W~~~~g~---------------------~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  189 RCLI-------PWHPNDGF---------------------LLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             cccc-------cchhcccc---------------------eeehhhhhhccCceEEecCCc
Confidence            6432       35443211                     012455667779999999887

; GO: 0008168 methyltransferase activity

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.026  Score=50.39  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHH
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA  149 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~  149 (313)
                      +|..+||+||.+||+|..+.+.  +..+|+|+|.....+.
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~  116 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLH  116 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccC
Confidence            5889999999999999999986  3468999999876554

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.90  E-value=0.043  Score=50.43  Aligned_cols=42  Identities=17%  Similarity=0.168  Sum_probs=35.3

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  156 (313)
                      +|+|++||.|+.+.-+.+. + -..|+++|+++..++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC
Confidence            6999999999998887764 3 3468999999999999998863

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=94.75  E-value=0.041  Score=52.56  Aligned_cols=71  Identities=23%  Similarity=0.250  Sum_probs=57.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+.....+++..++|++||-|+.+..++..-  ...++++|.++-.+.+........++.++..++.+|...-
T Consensus       102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~  172 (364)
T KOG1269|consen  102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM  172 (364)
T ss_pred             HHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC
Confidence            3444567788999999999999999999874  3679999999999999888888888776666677776543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.72  E-value=0.053  Score=47.61  Aligned_cols=83  Identities=17%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             CeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           90 GKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDII---GDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~---~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      |.-.+|.+--+.+...+  +++| +.|+++|.+-||-+...|+.+   ++.++|+++|++........  .+.+.+.++|
T Consensus        11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI   87 (206)
T PF04989_consen   11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRI   87 (206)
T ss_dssp             TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTE
T ss_pred             CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCce
Confidence            55556666555443322  2343 699999999999999887654   46689999999655443222  2334455689


Q ss_pred             EEEecCCCCCC
Q 021397          165 RLFVADGTTFS  175 (313)
Q Consensus       165 ~~~~~D~~~~d  175 (313)
                      +++.+|....+
T Consensus        88 ~~i~Gds~d~~   98 (206)
T PF04989_consen   88 TFIQGDSIDPE   98 (206)
T ss_dssp             EEEES-SSSTH
T ss_pred             EEEECCCCCHH
Confidence            99999986543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11524 putative methyltransferase; Provisional

Probab=94.45  E-value=0.085  Score=48.66  Aligned_cols=46  Identities=20%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK  157 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  157 (313)
                      .+|+.|||-++|+|..+. +|..++  -.-+|+|++++.++.++++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            589999999999987655 455554  3699999999999999988753

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=94.01  E-value=0.24  Score=40.81  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       137 ~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +|+|.||.+.+++..+++++..++.++++++...-..++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~   40 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE   40 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh
Confidence            5899999999999999999999988789999888776654

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.70  E-value=0.12  Score=45.09  Aligned_cols=43  Identities=21%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      -.+|+.|||-+||+|..+. +|..++  -+-+++|+++..++.+++
T Consensus       189 t~~gdiVlDpF~GSGTT~~-aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAV-AAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHH-HHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHH-HHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            3579999999999987655 445554  479999999999988864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=93.64  E-value=0.43  Score=43.71  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             CCEEEEECCCcCh----HHHHHHHHhCC----CcEEEEEcCCHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGA----KLCMILDIIGD----SGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       111 g~~VLDlcagpG~----kt~~la~~~~~----~~~V~avD~s~~~l~~~~~  153 (313)
                      .-+||-+||++|-    .+..+.+..+.    ..+|+|.|+|...|+.|++
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            4589999999994    45555666542    4689999999999999874

>PRK13699 putative methylase; Provisional

Probab=93.47  E-value=0.2  Score=44.78  Aligned_cols=49  Identities=20%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      -.+|+.|||-.||+|+...... .++  -..+|+|+++.-.+.+.++++...
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~-~~~--r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAAL-QSG--RRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHH-HcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence            3589999999999987665544 444  468999999999999988887653

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.44  E-value=0.23  Score=46.39  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=53.9

Q ss_pred             ccccccCCeEEEecHHH-HHHHHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397           83 TSMAYKQGKIYGIDAAS-GAAVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss-~~~~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      +.-.|.+|.+ +|..|- .-+....++++|.+||=+||||=|. |...|+.++ ..+|+.+|+++.|++.+++    +|.
T Consensus       142 d~vs~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga  215 (354)
T KOG0024|consen  142 DNVSFEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGA  215 (354)
T ss_pred             CCCchhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCC
Confidence            3344566653 455543 3356677899999999999999555 666677776 4799999999999999885    576


Q ss_pred             C
Q 021397          161 G  161 (313)
Q Consensus       161 ~  161 (313)
                      .
T Consensus       216 ~  216 (354)
T KOG0024|consen  216 T  216 (354)
T ss_pred             e
Confidence            3

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.00  E-value=0.35  Score=42.81  Aligned_cols=61  Identities=18%  Similarity=0.091  Sum_probs=39.8

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      -.+.||+|||-|..|-.+.-.+  -.+|..+|..++.++.+++.+...+ ....++++.-.+.|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f  116 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDF  116 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-
T ss_pred             cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhc
Confidence            4689999999999998764322  3589999999999999997654311 11245555555544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.87  E-value=0.17  Score=45.97  Aligned_cols=57  Identities=23%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.+|+...|+||.|||+|-++.++   .-.|+|+|.-+-+     +++-..|   .|+-...|+..|.
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~  265 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFR  265 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhccc---ceeeeeccCcccc
Confidence            458999999999999999998875   4689999975432     2332233   5788888886653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.28  E-value=0.24  Score=45.80  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +++|++||-||.+.-+.+. + -..|.|+|+++...+..+.|..        ....+|.+.++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~   54 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP--------EVICGDITEID   54 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCH
T ss_pred             cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc--------ccccccccccc
Confidence            6999999999999988764 2 2378999999999999998863        56778876554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=92.22  E-value=0.84  Score=40.27  Aligned_cols=77  Identities=10%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcCh--HHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGA--KLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~--kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..++.++..+..=.....+++.+|+-|.  .|+.|+... ...|+++|+-.++..+...++.+..+|+.+.++++.+|.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            45566776666554555789999776443  344443322 235799999999998888899999899876679998885

The function of this family is unknown.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=91.91  E-value=0.41  Score=43.22  Aligned_cols=61  Identities=13%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+..+|+|+|||-==.++..-... .+...+|.||+...++.+.+.+..++.  +..+...|..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~  164 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLL  164 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TT
T ss_pred             CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeee
Confidence            346899999999877776554332 246899999999999999999999997  4566666653

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=91.53  E-value=0.82  Score=42.06  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             CEEEEECCCcChHHHH-HHHHhCCCcEEEEEcCCHHHHHHHHHHHH-HcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCM-ILDIIGDSGSVTGVDVARHRLAACRTLLQ-KYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~-la~~~~~~~~V~avD~s~~~l~~~~~~~~-~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|+=+||||=-.|.. +++..+.+..|+++|+++.+.+.+++.++ ..|+..++.++.+|+...
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc
Confidence            4999999999877654 45554445689999999999999999888 667777899999998654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=89.89  E-value=0.9  Score=40.83  Aligned_cols=87  Identities=18%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             ccccccCCeEEEecHHHHHHHHh-cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSA-LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~-l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....|.+|+......-+...... -.--.|.+||=+|  -+-.+...+.+.+....|+.+|+++..++-+++.+++.|+ 
T Consensus        16 ~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-   92 (243)
T PF01861_consen   16 PDVELDQGYATPETTLRRAALMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-   92 (243)
T ss_dssp             --GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred             CccccccccccHHHHHHHHHHHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-
Confidence            34567777777655544332211 1123588998554  6666555555555567999999999999999999999999 


Q ss_pred             CcEEEEecCCCC
Q 021397          162 DRCRLFVADGTT  173 (313)
Q Consensus       162 ~~v~~~~~D~~~  173 (313)
                       +|+.+..|.+.
T Consensus        93 -~i~~~~~DlR~  103 (243)
T PF01861_consen   93 -PIEAVHYDLRD  103 (243)
T ss_dssp             --EEEE---TTS
T ss_pred             -ceEEEEecccc
Confidence             49999999863

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.78  E-value=1  Score=43.01  Aligned_cols=53  Identities=17%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      +.++..+.+..+-+.|.|+|+|+|..+..|+-..  +-.|.|+|-|....+++++
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            4445555555666799999999999999998654  4789999999665555543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=89.51  E-value=1.1  Score=36.70  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=32.1

Q ss_pred             EECCCcC--hHHHHHH-HHhCCCcEEEEEcCCHHHHHHHHHH--HHHcCCCCcEEEEe
Q 021397          116 DLCAAPG--AKLCMIL-DIIGDSGSVTGVDVARHRLAACRTL--LQKYALGDRCRLFV  168 (313)
Q Consensus       116 DlcagpG--~kt~~la-~~~~~~~~V~avD~s~~~l~~~~~~--~~~~g~~~~v~~~~  168 (313)
                      |+||.-|  ..+..+. +..+..++|+++|.++..++.++++  +.-....+.+++..
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~   58 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP   58 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence            8999999  6655554 2455568999999999999999999  54443222344443

; PDB: 2PY6_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=88.76  E-value=1.4  Score=42.07  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=40.2

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  154 (313)
                      ....+++|++||..|+|+ |..+.++|+..+. ..|+++|.++.+++.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence            345677899999999887 7778888888753 4699999999998887753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=86.40  E-value=0.96  Score=39.47  Aligned_cols=43  Identities=12%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             CCEEEEECCCcChHH----HHHHHHhCC----CcEEEEEcCCHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKL----CMILDIIGD----SGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       111 g~~VLDlcagpG~kt----~~la~~~~~----~~~V~avD~s~~~l~~~~~  153 (313)
                      .-+||.+||++|-=+    ..+.+..+.    .-+|+|.|+|+..++.|++
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            358999999999643    333442221    3489999999999998874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=86.34  E-value=2.5  Score=42.28  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             cCCeEEEecHHHHHHHHhcCCC--CCCEEEEECCCcChHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397           88 KQGKIYGIDAASGAAVSALNIS--AGDHVLDLCAAPGAKLCMILDIIG---DSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~--~g~~VLDlcagpG~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..|.++.-..-+.+.+..+++.  |+..|.|+|||+|+.-....+.++   ....+++.+....+...++.|+.-++.
T Consensus       193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~  270 (501)
T TIGR00497       193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI  270 (501)
T ss_pred             cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence            3566666666677777777765  678999999999998765544432   124689999999999999988766665

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.79  E-value=1.6  Score=38.85  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=50.3

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ++...+.-..+.|+++|-||||.|..+.+.  +..++..++++...+.-++...+....  +..+..+|+..|
T Consensus        42 IvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~~--~~~IHh~D~LR~  110 (326)
T KOG0821|consen   42 IVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAPG--KLRIHHGDVLRF  110 (326)
T ss_pred             HHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCCc--ceEEecccccee
Confidence            444455556789999999999999998864  235788888888877777765553333  677888887544

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.58  E-value=1.2  Score=41.94  Aligned_cols=43  Identities=19%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  156 (313)
                      .+++|++||-||...-+.+. + --.+.|+|+++..++..+.|..
T Consensus         4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCC
Confidence            57999999999999777654 2 2468999999999999988764

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=85.53  E-value=0.97  Score=41.31  Aligned_cols=64  Identities=22%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             CEEEEECCCc--ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          112 DHVLDLCAAP--GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       112 ~~VLDlcagp--G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ...||+|||-  -+.+-.+|+...+..+|+-+|+++-.+..++..+....- +...++.+|.+..+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~  135 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA  135 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH
Confidence            5799999994  456778888888889999999999999988887765432 248899999986543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.46  E-value=1.6  Score=36.36  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ..++.-.+..+.+|+|+|-|..-++.++.-  --.-+++|+++-.+...+-..-|.|+.....+...|.-.+|.
T Consensus        65 LSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl  136 (199)
T KOG4058|consen   65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL  136 (199)
T ss_pred             HHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence            334444566789999999999988887752  235789999999998888878888888778888888877765

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=85.14  E-value=6.6  Score=37.15  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             hcCCCCC----CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397          105 ALNISAG----DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus       105 ~l~~~~g----~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      .+....|    ...+|+|+|.|..+-.+....+   .|-+++.+..-+-.++..+. .|    |+.+-+|+
T Consensus       168 il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdm  230 (342)
T KOG3178|consen  168 ILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDM  230 (342)
T ss_pred             hhhhhcccccCceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccc
Confidence            3444455    7899999999999999988654   48899999888877776664 44    55667776

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=85.00  E-value=0.23  Score=43.64  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ..++||+|||-|-.|.+++-..   .+|+|.+.|..|..+++.
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence            3589999999999999998765   369999999998877664

>PRK10458 DNA cytosine methylase; Provisional

Probab=84.23  E-value=3.1  Score=41.22  Aligned_cols=43  Identities=19%  Similarity=0.162  Sum_probs=35.6

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      .-+++|++||.||.+.-+-.. + .-.|.++|+++...+.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence            458999999999999888553 3 236899999999999888874

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=83.96  E-value=1.3  Score=38.65  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=37.4

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHH
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH  146 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~  146 (313)
                      .+.++++|++|+|+--|.|.+|..++..++.+|.|++.=..+.
T Consensus        42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~   84 (238)
T COG4798          42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL   84 (238)
T ss_pred             EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence            3557899999999999999999999999999999998765443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=83.37  E-value=0.46  Score=45.13  Aligned_cols=34  Identities=32%  Similarity=0.668  Sum_probs=28.4

Q ss_pred             hhhcccceeeccccccCCCccccccccccccccc
Q 021397          261 SSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTL  294 (313)
Q Consensus       261 v~~~~~~~l~d~e~~~~~~~~~~~~~~~w~~~~~  294 (313)
                      ....||+||+|++|+.|+.+++.+.+-.|+|.+-
T Consensus       233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~  266 (375)
T KOG2198|consen  233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQ  266 (375)
T ss_pred             hhhhcceeEEecccCCCcccccCchHhhhhhhhh
Confidence            3568999999999999999999988877765543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=83.09  E-value=3  Score=39.54  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             cCCCCCCEEEEECCC-cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          106 LNISAGDHVLDLCAA-PGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       106 l~~~~g~~VLDlcag-pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      .+++||++|+=.|+| -|..+.++|+.++  .+|+|+|+++++++.+++
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~  208 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK  208 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH
Confidence            567899999888877 4456778888776  799999999999987764

>PRK00536 speE spermidine synthase; Provisional

Probab=83.05  E-value=6.7  Score=35.85  Aligned_cols=75  Identities=11%  Similarity=0.004  Sum_probs=52.3

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEec----CCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVA----DGTTF  174 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~----D~~~~  174 (313)
                      ++....+.| .+||=+|.|-|+....+.+.  + .+|+-||+++..++.+++-+-..  ++ +.+++++..    +...|
T Consensus        65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~f  140 (262)
T PRK00536         65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKY  140 (262)
T ss_pred             HHHhhCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcC
Confidence            344444444 79999999999999999886  2 49999999999999999854332  12 235666542    12356


Q ss_pred             Cccccc
Q 021397          175 SLAPLR  180 (313)
Q Consensus       175 d~v~~D  180 (313)
                      |.+.+|
T Consensus       141 DVIIvD  146 (262)
T PRK00536        141 DLIICL  146 (262)
T ss_pred             CEEEEc
Confidence            666666

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=82.63  E-value=0.41  Score=42.33  Aligned_cols=53  Identities=13%  Similarity=0.065  Sum_probs=44.4

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      +.+.+.|.+|...+||--|.||.|..|.+.-+ ..+++|.|.+|-+-+.++...
T Consensus        35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhh
Confidence            56788899999999999999999999999865 478999999987766655444

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.54  E-value=3.6  Score=38.56  Aligned_cols=56  Identities=11%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      +....+++||++|.=.|.|.=|.+...-.+..+.++|+|+|+++++.+.++    ++|..
T Consensus       184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT  239 (375)
T KOG0022|consen  184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT  239 (375)
T ss_pred             hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcc
Confidence            445667899999999988876766655545555689999999999998876    45654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.43  E-value=3  Score=40.17  Aligned_cols=62  Identities=23%  Similarity=0.238  Sum_probs=42.8

Q ss_pred             cCCeEEEe-cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397           88 KQGKIYGI-DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus        88 ~~G~~~~Q-d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      ..+++|-| .+....-..+|++.|+++||=+++|- ..++.++.  .+..+|+|||+|+..+..++
T Consensus        12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG-~N~L~yL~--~~P~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAG-CNALDYLL--AGPKRIHAVDLNPAQNALLE   74 (380)
T ss_pred             ccceeeccccCCcHHHHHHhCCCCCCeEEEEccCC-chHHHHHh--cCCceEEEEeCCHHHHHHHH
Confidence            33555554 23344556789999999999997664 44444432  34579999999999877666

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=81.99  E-value=2.3  Score=39.84  Aligned_cols=40  Identities=15%  Similarity=0.120  Sum_probs=33.0

Q ss_pred             EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397          114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      |+|++||.||.+.-+.+. + --.|.|+|+++..++..+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhC
Confidence            689999999999888653 2 235788999999999988875

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=81.18  E-value=4.7  Score=38.15  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=42.8

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .+...+++++|++|.=.|+|-=|.+......+-+.++|+|+|+++.+++.++    ++|..
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT  232 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGAT  232 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCc
Confidence            3566788999999999998865555444444445689999999999998876    45654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
2yxl_A	450	Crystal Structure Of Ph0851 Length = 450		1e-06
1sqf_A	429	The Crystal Structure Of E. Coli Fmu Binary Complex		2e-05
4fp9_A	360	Human Mterf4-Nsun4 Protein Complex Length = 360		4e-05
2b9e_A	309	Human Nsun5 Protein Length = 309		5e-05
4fzv_A	359	Crystal Structure Of The Human Mterf4:nsun4:sam Ter		8e-05
3a4t_A	274	Crystal Structure Of Atrm4 From M.Jannaschii With S		7e-04

>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 83  TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
           TS A+ +GKI   + AS  A   L+   G+ V+DL AAPG K   + +++ + G +   D
Sbjct: 232 TSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291
Query: 143 VARHRLAACRTLLQKYAL 160
           V + R+   +  +++  +
Sbjct: 292 VDKMRMKRLKDFVKRMGI 309

>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86  AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
            ++ G +   DA++   ++ L    G+H+LDLCAAPG K   IL++  ++  V  VD+  
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
            RL+     L++  LG +  +   DG           F     R+LLD P S   V++  
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
            D        I W  R R +
Sbjct: 335 PD--------IKWLRRDRDI 346

>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93  YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
           Y +DAAS   V AL +  GD VLDLCAAPG K   +L   G   ++   D++  R+A  +
Sbjct: 132 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIARLQ 190
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
            +L  Y       G++ R+   DG
Sbjct: 191 KILHSYVPEEIRDGNQVRVTSWDG 214

>pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 87  YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
           Y+ G +   D AS      L+   G HV+D CAAPG K   +  ++ + G +   D+   
Sbjct: 79  YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 138
Query: 147 RLAACRTLLQK 157
           RLA+  TLL +
Sbjct: 139 RLASMATLLAR 149

>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 91  KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
           + Y  DAAS   V AL +  GD VLDLCAAPG K   +L   G   ++   D++  R+A 
Sbjct: 129 EYYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIAR 187
Query: 151 CRTLLQKYAL-----GDRCRLFVADG 171
            + +L  Y       G++ R+   DG
Sbjct: 188 LQKILHSYVPEEIRDGNQVRVTSWDG 213

>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
            LN    D +LD+CAAPG K   +  ++ + G++  V++++ R  A ++ + +  +
Sbjct: 78  VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	1e-18
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	2e-17
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	2e-16
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	2e-16
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	3e-16
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	7e-16
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	3e-14
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	5e-13
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	6e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	8e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	6e-05
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	9e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-04

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWL- 69
             E  +   +               PR  R   LK  +  DL +   +   + ++V W  
Sbjct: 28  WGERAIRIAEAMEKPL---------PRCFRVNTLKI-SVQDLVKRLNKKGFQFKRVPWAK 77

Query: 70  SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            GF        I ++  +  G IY  +A+S     AL+   G+ V D+ AAPG K   + 
Sbjct: 78  EGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 137

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFVADGTTFSLAPL---RLLLD- 184
            ++ + G +   DV  +RL   R  L +  LG     LF +         +   ++LLD 
Sbjct: 138 QLMRNDGVIYAFDVDENRLRETRLNLSR--LGVLNVILFHSSSLHIGELNVEFDKILLDA 195

Query: 185 PGSCNSVLQEKDDTFREWT 203
           P + +  + +  +     T
Sbjct: 196 PCTGSGTIHKNPERKWNRT 214

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 39  PRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
            ++IR   LK  N   L++        LEK      F        I ++  Y  G     
Sbjct: 10  MQFIRVNTLKI-NPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
             +S      LN    D +LD+CAAPG K   +  ++ + G++  V++++ R  A
Sbjct: 69  SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA 123

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 25/199 (12%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
           L E   DF                  +  R   LK      ++   +E   +L+   + +
Sbjct: 20  LGEEASDFFSALEQGSV--------KKGFRWNPLKPAGLDMVQTYHSE---ELQPAPYSN 68

Query: 71  -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            GF           S  ++ G  Y  + ++    +A     G+ VLDLCAAPG K   + 
Sbjct: 69  EGFLGTVN----GKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLA 124

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----RLLLD- 184
             +   G +   ++   R       ++++ + +   +                 R+++D 
Sbjct: 125 AQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIVVDA 183

Query: 185 PGSCNSVLQEKDDTFREWT 203
           P S   + ++  +  +EWT
Sbjct: 184 PCSGEGMFRKDPNAIKEWT 202

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 21/209 (10%)

Query: 14  LPEAFLDFLKENGLDPSVYSA---ADSTPRY--IR---LKTGNEADLEEIEAELKCKLEK 65
            P+AFL  ++E       +     A   P    IR   LK  + AD  ++ A     L  
Sbjct: 8   FPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKI-SVADFLQLTAPYGWTLTP 66

Query: 66  VVWLS-GFY---SLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCA 119
           + W   GF+        + + ++  +  G  Y  +A+S   V+AL  + +A   V+D+ A
Sbjct: 67  IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAA 126

Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
           APG+K   I   + + G++   + +  R+      + +  + +   L   DG  F  A  
Sbjct: 127 APGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVP 185

Query: 180 ----RLLLD-PGSCNSVLQEKDDTFREWT 203
                +LLD P S   V+++  D  + W+
Sbjct: 186 EMFDAILLDAPCSGEGVVRKDPDALKNWS 214

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 30/181 (16%)

Query: 35  ADSTPRYIR---LKTGNEADLEEIEAE-----------------LKCKLEKVVWLSGFYS 74
           A   PR++R   LKT ++  ++  + +                           +     
Sbjct: 7   ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66

Query: 75  LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
            P    +     Y+ G +   D AS      L+   G HV+D CAAPG K   +  ++ +
Sbjct: 67  FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126

Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRC-RLFVADGTTFSLAPL------RLLLDPGS 187
            G +   D+   RLA+  TLL +   G  C  L   D    S +         +LLDP S
Sbjct: 127 QGKIFAFDLDAKRLASMATLLAR--AGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP-S 183

Query: 188 C 188
           C
Sbjct: 184 C 184

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 20/203 (9%)

Query: 14  LPEAFLDFLKEN-GLD-PSVYSAADSTPRY--IR---LKTGNEADLEEIEAELKCKLEKV 66
           LP+AFL  + E  G + P+   A     R   +R   LK       E  +      L  +
Sbjct: 2   LPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKL----PPEAFQRISPWPLRPI 57

Query: 67  VWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
            W   GFY  P + +      +  G  Y  + ++ A    L+   G+ VLDL AAPG K 
Sbjct: 58  PWCQEGFY-YPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKT 116

Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----RL 181
             +   +G  G +   +V   R+      +++   G    +  A     + A      R+
Sbjct: 117 THLAARMGGKGLLLANEVDGKRVRGLLENVER--WGAPLAVTQAPPRALAEAFGTYFHRV 174

Query: 182 LLD-PGSCNSVLQEKDDTFREWT 203
           LLD P S   + ++  +  R W 
Sbjct: 175 LLDAPCSGEGMFRKDREAARHWG 197

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 50  ADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL 106
           A++EE+  EL+    ++ +   +     +       TS A+ +GKI   + AS  A   L
Sbjct: 196 ANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVL 255

Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-DRCR 165
           +   G+ V+DL AAPG K   + +++ + G +   DV + R+   +  +++  +G    +
Sbjct: 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR--MGIKIVK 313

Query: 166 LFVADGTTF 174
             V D    
Sbjct: 314 PLVKDARKA 322

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 39  PRYIRLKTGNEADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
           P ++R+        +   A L     K            L     +     ++ G +   
Sbjct: 173 PMWLRINR-THHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQ 231

Query: 96  DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
           DA++   ++ L    G+H+LDLCAAPG K   IL++  +   V  VD+   RL+     L
Sbjct: 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNL 290

Query: 156 QKYALGDRCRLFVADGTT 173
           ++  LG +  +   DG  
Sbjct: 291 KR--LGMKATVKQGDGRY 306

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL------ 154
           A   A  +  G+ +L++    G    ++ D +G SG VTG+D+A     A  TL      
Sbjct: 34  AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH 93

Query: 155 LQKYALGDRCRLFVADGTTFSLAPL 179
           L    LGDR  +      +  L P+
Sbjct: 94  LLAGPLGDRLTVHFNTNLSDDLGPI 118

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 71  GFYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            F  L P I      M      ++  DAA    V+   IS GD +++     GA    + 
Sbjct: 55  EFKILRPRIVDYLDKMKRGPQIVHPKDAA--LIVAYAGISPGDFIVEAGVGSGALTLFLA 112

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
           +I+G  G V   ++           ++     DR  + + D
Sbjct: 113 NIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD 153

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 16/118 (13%)

Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD-------VARHRLAACR 152
           G+ + A     G  VLDL    G  + +   ++G+ G V GVD       VAR  +    
Sbjct: 73  GSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132

Query: 153 TLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQ---EKDDTFREW 202
                       R         + A    + D  S      N V      K   F+E 
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPD-SSVDIVISNCVCNLSTNKLALFKEI 189

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 11/70 (15%), Positives = 20/70 (28%)

Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
           +  G  V  +     ++L  +         + G+D     L     L   +AL  +  L 
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175

Query: 168 VADGTTFSLA 177
             D       
Sbjct: 176 RQDAWKLDTR 185

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%)

Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164
            + +  GD V+D     G     +  ++G++G V G D+    +A     L    L DR 
Sbjct: 17  KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76

Query: 165 RLFVAD 170
            L    
Sbjct: 77  TLIKDG 82

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
             I+   H++D     G    +++ ++ +    TG+D     LA  R L +   L     
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL--LPYDSE 75

Query: 166 LFVADGTTFSLAPLRLLLDPGS-----CNSVLQ---EKDDTFREW 202
               D T   L                C++ L      +   ++ 
Sbjct: 76  FLEGDATEIEL--------NDKYDIAICHAFLLHMTTPETMLQKM 112

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
           +    +  G  VLD+    G  L  +  ++G+ G V  +DV    +      + K  L  
Sbjct: 30  LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-K 88

Query: 163 RCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQE---KDDTFRE 201
              +  ++         ++ L   +           E         E
Sbjct: 89  NVEVLKSEEN-------KIPLPDNTVDFIFMAFTFHELSEPLKFLEE 128

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 72  FYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
            Y L P +     +M  +   +Y  D++       L++  GD ++D     GA   ++  
Sbjct: 75  GYILIPSLIDEIMNMKRRTQIVYPKDSS--FIAMMLDVKEGDRIIDTGVGSGAMCAVLAR 132

Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
            +G SG V   +          + L K+ L +R  + V D 
Sbjct: 133 AVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 173

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 69  LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV----SALNISAGDHVLDLCAAPGAK 124
            +  ++      +        G    +D A+        + L++ +GD VLD+    G  
Sbjct: 16  FTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGK- 74

Query: 125 LCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
               + +       VTG+ ++R ++           L +R     AD
Sbjct: 75  --PAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYAD 119

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 95  IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
            +              G  VL+     GA   +IL        +T +D++   L   R  
Sbjct: 22  AETLEKLLHHDTVYPPGAKVLEAGCGIGA-QTVILAKNNPDAEITSIDISPESLEKAREN 80

Query: 155 LQKYALGDRCRLFVAD 170
            +K  +    +   A+
Sbjct: 81  TEKNGI-KNVKFLQAN 95

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 94  GIDAASGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
           G   A+  AVS +  ++    + D+    G +   + D +   G +TG+D+    +    
Sbjct: 29  GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFN 86

Query: 153 TLLQKYALGDRCRLFVAD 170
               K    DR +     
Sbjct: 87  ENAVKANCADRVKGITGS 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 44/216 (20%)

Query: 58  ELKCKLE-KVVWLS-GFYSLPPDI-KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHV 114
           +++CK++ K+ WL+    + P  + ++   + Y+    +   +   + +     S    +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 115 LDLCAAPGAKLC-MILDIIGDSGSVTGVDVARHRLAACRTLL--QKYALGDRCRLFVADG 171
             L  +   + C ++L  + ++ +    +++      C+ LL  +   + D   L  A  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTD--FLSAATT 286

Query: 172 TTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH 231
           T  SL    + L P        E      ++    P    +  +               +
Sbjct: 287 THISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVLTT-------------N 326

Query: 232 PELIFYGRRSGIVGLTKEEI-----YQSVCNSEVSS 262
           P  +     S I    ++ +     ++ V   ++++
Sbjct: 327 PRRL-----SIIAESIRDGLATWDNWKHVNCDKLTT 357

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 94  GIDAASGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
           G    +  A+S + N++    + D+    G +  ++   +   G VTG+D     +    
Sbjct: 29  GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFN 86

Query: 153 TLLQKYALGDRCRLFVAD 170
              ++  L +R    V  
Sbjct: 87  RNARQSGLQNRVTGIVGS 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	100.0
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	100.0
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	100.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	100.0
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	100.0
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	100.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	100.0
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	100.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	100.0
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.61
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.52
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.47
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.44
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.41
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.4
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.39
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.39
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.38
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.35
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.34
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.33
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.32
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.32
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.32
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.32
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.32
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.31
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.31
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.31
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.3
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.3
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.3
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.3
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.3
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.3
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.3
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.3
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.29
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.29
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.29
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.29
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.29
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.28
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.28
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.26
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.24
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.24
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.23
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.23
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.23
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.21
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.21
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.2
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.2
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.19
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.18
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.18
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.18
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.17
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.17
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.17
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.17
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.17
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.17
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.16
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.16
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.16
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.16
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.16
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.15
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.15
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.15
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.15
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.15
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.14
3ocj_A	305	Putative exported protein; structural genomics, PS	99.14
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.14
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.14
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.14
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.13
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.13
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.13
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.13
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.12
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.12
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.12
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.11
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.11
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.11
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.11
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.11
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.11
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.11
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.1
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.09
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.09
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.09
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.08
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.07
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.06
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.06
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.06
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.05
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.05
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.05
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.05
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.05
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.04
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.03
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.03
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.03
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.03
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.03
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.02
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.02
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.01
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.01
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.01
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.0
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.0
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.0
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.99
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.99
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.98
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.98
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.98
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.97
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.96
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.96
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.95
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.95
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.95
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.95
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.94
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.94
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.94
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.94
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.94
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.93
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.93
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.93
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.92
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.92
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.92
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.92
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.92
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.92
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.92
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.92
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.91
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.91
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.91
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.9
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.9
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.9
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.89
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.88
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.88
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.87
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.87
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.87
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.86
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.86
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.86
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.85
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.85
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.84
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.84
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.84
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.84
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.83
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.83
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.83
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.81
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.81
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.81
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.81
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.8
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.8
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.79
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.79
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.79
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.78
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.78
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.78
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.78
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.77
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.77
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.77
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.76
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.76
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.76
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.76
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.75
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.74
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.74
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.73
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.73
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.73
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.72
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.72
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.71
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.71
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.71
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.7
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.68
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.65
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.63
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.63
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.62
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.62
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.6
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.6
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.59
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.58
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.56
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.56
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.56
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.56
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.55
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.55
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.54
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.53
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.52
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.51
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.51
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.5
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.5
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.5
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.49
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.49
2o07_A	304	Spermidine synthase; structural genomics, structur	98.49
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.47
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.47
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.47
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.46
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.46
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.45
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.45
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.44
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.43
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.41
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.4
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.4
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.37
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.37
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.36
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.34
3khk_A	544	Type I restriction-modification system methylation	98.31
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.31
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.3
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.26
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.24
3ufb_A	530	Type I restriction-modification system methyltran	98.22
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.21
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.2
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.18
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.17
3lkd_A	542	Type I restriction-modification system methyltrans	98.15
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.15
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.13
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.12
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.07
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.05
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.04
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.04
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.96
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.93
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.86
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.85
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.84
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.76
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.75
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.7
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.52
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.51
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.38
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.37
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.29
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.27
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.21
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.88
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.56
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.07
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.03
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.99
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.78
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.72
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.22
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.2
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.04
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.87
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.74
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.74
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.59
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.52
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.51
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.21
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.56
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.5
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.29
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.27
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.28
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.92
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	90.68
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.63
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	90.26
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.23
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	89.16
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.98
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	88.74
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.46
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	88.45
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.4
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.29
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	88.2
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	88.07
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	88.03
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.68
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	87.66
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	87.33
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.29
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	87.09
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	86.89
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	85.24
3gms_A	340	Putative NADPH:quinone reductase; structural genom	84.66
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	84.56
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	83.68
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	82.63
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	82.41
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	82.2
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	81.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	81.83
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	80.34

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=100.00  E-value=1.2e-42  Score=323.57  Aligned_cols=274  Identities=18%  Similarity=0.238  Sum_probs=213.4

Q ss_pred             cccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-
Q 021397            6 DGEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP-   77 (313)
Q Consensus         6 ~~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~-   77 (313)
                      ..|+.+||+|+|+++ |.+.+| +..  ++. .+.++|+++|||+   +++++.+.|++. |+.+++.+|+|+++.+.. 
T Consensus         8 ~~l~~~~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~   85 (315)
T 1ixk_A            8 LDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKK-GFQFKRVPWAKEGFCLTRE   85 (315)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHT-TCEEEEETTEEEEEEEEEC
T ss_pred             HHHHHHhCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhC-CCeeeECCCCCceEEEeCC
Confidence            457889999999999 788899 533  444 3588999999997   457788888876 999999999999988853 


Q ss_pred             CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397           78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK  157 (313)
Q Consensus        78 ~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  157 (313)
                      +..+..++.|.+|++++||.+|++++.++++++|++|||+|||||++|.++++.+++.+.|+|+|+|+.|++.+++|+++
T Consensus        86 ~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~  165 (315)
T 1ixk_A           86 PFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR  165 (315)
T ss_dssp             SSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999987778999999999999999999999


Q ss_pred             cCCCCcEEEEecCCCC-------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397          158 YALGDRCRLFVADGTT-------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS  229 (313)
Q Consensus       158 ~g~~~~v~~~~~D~~~-------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~  229 (313)
                      +|+. +++++++|+..       ||.+++| ||    |+.|+++++|++...|+.  .........|.+++..+.++++|
T Consensus       166 ~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d~Pc----sg~g~~~~~p~~~~~~~~--~~~~~~~~~q~~~L~~~~~~Lkp  238 (315)
T 1ixk_A          166 LGVL-NVILFHSSSLHIGELNVEFDKILLDAPC----TGSGTIHKNPERKWNRTM--DDIKFCQGLQMRLLEKGLEVLKP  238 (315)
T ss_dssp             HTCC-SEEEESSCGGGGGGGCCCEEEEEEECCT----TSTTTCC--------CCH--HHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             hCCC-eEEEEECChhhcccccccCCEEEEeCCC----CCcccccCChhHhhcCCH--HHHHHHHHHHHHHHHHHHHhCCC
Confidence            9986 69999999864       5556666 66    888899999998555544  34455577888888888888866


Q ss_pred             cCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccceeeccccccCCCcccccccccccccccccccCCcccc
Q 021397          230 EHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERT  304 (313)
Q Consensus       230 ~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~l~d~e~~~~~~~~~~~~~~~w~~~~~~~~~~~~~r~  304 (313)
                                 ||+++|+||| ++|+|||+++...+++.  +.+.. +.+ ...+++..|.+..+.+++..+.|+
T Consensus       239 -----------GG~lv~stcs-~~~~Ene~~v~~~l~~~--~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~r~  297 (315)
T 1ixk_A          239 -----------GGILVYSTCS-LEPEENEFVIQWALDNF--DVELL-PLK-YGEPALTNPFGIELSEEIKNARRL  297 (315)
T ss_dssp             -----------EEEEEEEESC-CCGGGTHHHHHHHHHHS--SEEEE-CCC-SSEECCSSGGGCCCCGGGGGSEEE
T ss_pred             -----------CCEEEEEeCC-CChHHhHHHHHHHHhcC--CCEEe-cCC-ccccCcccccccccccccCCEEEE
Confidence                       9999999999 99999999996655431  11110 111 223566777766555544444443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=100.00  E-value=3.8e-41  Score=329.40  Aligned_cols=239  Identities=18%  Similarity=0.236  Sum_probs=197.1

Q ss_pred             cccCCCChHHHHH-HHHHcCCC---hhhhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397            8 EISKLPLPEAFLD-FLKENGLD---PSVYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI   79 (313)
Q Consensus         8 ~~~~ys~P~w~~~-~~~~~g~~---~~~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~   79 (313)
                      |...|++|+||++ |.+.+|.+   ..++. .+.++|+++|||+   +.+++.+.|++. |+.+++++|+|+++.+....
T Consensus         2 ~~~~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~   80 (479)
T 2frx_A            2 AQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPY-GWTLTPIPWCEEGFWIERDN   80 (479)
T ss_dssp             -----CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGG-CCCCCEETTEEEEEC-----
T ss_pred             CCccccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHc-CCceeecCCCCceEEEecCc
Confidence            3456899999999 66678875   23444 4588999999997   457777888766 99999999999998886421


Q ss_pred             ----CCcccccccCCeEEEecHHHHHHHHhcCCC--CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397           80 ----KIATSMAYKQGKIYGIDAASGAAVSALNIS--AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus        80 ----~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~--~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                          .+..+++|.+|.+++||++||+++.+++++  +|++|||+|||||+||+++|+.+++.+.|+|+|+|+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~  160 (479)
T 2frx_A           81 EDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA  160 (479)
T ss_dssp             ----CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred             ccccCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence                578999999999999999999999999998  99999999999999999999999877899999999999999999


Q ss_pred             HHHHcCCCCcEEEEecCCCC--------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhh
Q 021397          154 LLQKYALGDRCRLFVADGTT--------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASK  224 (313)
Q Consensus       154 ~~~~~g~~~~v~~~~~D~~~--------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~  224 (313)
                      |++++|+. ++.++++|+..        ||.|++| ||    |++|+++++|++...|++.  +.......|.+++..+.
T Consensus       161 n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc----Sg~G~~~~~pd~~~~~~~~--~~~~l~~~q~~iL~~a~  233 (479)
T 2frx_A          161 NISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDAPC----SGEGVVRKDPDALKNWSPE--SNQEIAATQRELIDSAF  233 (479)
T ss_dssp             HHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEECCC----CCGGGGGTCTTSSSSCCHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECCCc----CCcccccCCHHHHhhcCHh--HHHHHHHHHHHHHHHHH
Confidence            99999986 79999999853        5667777 77    8889999999987677654  34455678888899999


Q ss_pred             hhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397          225 AIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD  266 (313)
Q Consensus       225 ~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~  266 (313)
                      ++++|           ||+||||||| ++++|||++|.+.++
T Consensus       234 ~~Lkp-----------GG~LvysTcs-~~~~Ene~vv~~~l~  263 (479)
T 2frx_A          234 HALRP-----------GGTLVYSTCT-LNQEENEAVCLWLKE  263 (479)
T ss_dssp             HHEEE-----------EEEEEEEESC-CSSTTTHHHHHHHHH
T ss_pred             HhcCC-----------CCEEEEeccc-CCcccCHHHHHHHHH
Confidence            88866           9999999999 999999999976654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=100.00  E-value=9.6e-41  Score=324.27  Aligned_cols=234  Identities=18%  Similarity=0.238  Sum_probs=198.9

Q ss_pred             CChHHHHH-HHHHcCCChh-hhh-hcCC-CCeEEEecCChHHHHHHHHHhcCCceEEeccCCCcEEeCCCCCCccccccc
Q 021397           13 PLPEAFLD-FLKENGLDPS-VYS-AADS-TPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYK   88 (313)
Q Consensus        13 s~P~w~~~-~~~~~g~~~~-~~~-~~~~-~~~~~Rvn~~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~   88 (313)
                      .+|+||++ |.+.+|.+.. ++. .+++ +|.++|||+.+.+. +.+.+..|+.+++++|+|+++++.....+..++.|.
T Consensus         1 ~lP~w~~~~~~~~~g~e~~~~l~a~~~~~~~~~lRvN~lk~~~-~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~~~   79 (464)
T 3m6w_A            1 MLPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPP-EAFQRISPWPLRPIPWCQEGFYYPEEARPGPHPFFY   79 (464)
T ss_dssp             CCCHHHHHHHHHHHGGGHHHHHHHHHTSCCCCEEEECTTTCCH-HHHHHHCSSCCEEETTEEEEEECCTTCCCSSSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCH-HHHHHHcCCCceecCCCCceEEECCCCCcccChHHh
Confidence            38999999 7778896633 443 4577 89999999865442 222223478889999999999998655689999999


Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      +|++++||++|++++.++++++|++|||+|||||++|+++|+.+++.+.|+|+|+|+.|++.+++|++++|+.  +.+++
T Consensus        80 ~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~  157 (464)
T 3m6w_A           80 AGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQ  157 (464)
T ss_dssp             TTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEEC
T ss_pred             CCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEE
Confidence            9999999999999999999999999999999999999999999987789999999999999999999999984  89999


Q ss_pred             cCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeec
Q 021397          169 ADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGR  239 (313)
Q Consensus       169 ~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k  239 (313)
                      +|+.        .||.|++| ||    |++|+++++|++...|++  .........|.+++..+.++++|          
T Consensus       158 ~Da~~l~~~~~~~FD~Il~D~Pc----Sg~G~~rr~pd~~~~~~~--~~~~~l~~~Q~~iL~~a~~~Lkp----------  221 (464)
T 3m6w_A          158 APPRALAEAFGTYFHRVLLDAPC----SGEGMFRKDREAARHWGP--SAPKRMAEVQKALLAQASRLLGP----------  221 (464)
T ss_dssp             SCHHHHHHHHCSCEEEEEEECCC----CCGGGTTTCTTSGGGCCT--THHHHHHHHHHHHHHHHHTTEEE----------
T ss_pred             CCHHHhhhhccccCCEEEECCCc----CCccccccChHHhhhcCH--HHHHHHHHHHHHHHHHHHHhcCC----------
Confidence            9963        47788888 88    999999999998666654  44455678889999999988866          


Q ss_pred             CCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          240 RSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       240 ~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                       ||+||||||| ++|+|||++|.+.+++
T Consensus       222 -GG~LvysTCs-~~~eEne~vv~~~l~~  247 (464)
T 3m6w_A          222 -GGVLVYSTCT-FAPEENEGVVAHFLKA  247 (464)
T ss_dssp             -EEEEEEEESC-CCGGGTHHHHHHHHHH
T ss_pred             -CcEEEEEecc-CchhcCHHHHHHHHHH
Confidence             9999999999 9999999999776654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=100.00  E-value=4.3e-41  Score=326.33  Aligned_cols=231  Identities=15%  Similarity=0.205  Sum_probs=194.8

Q ss_pred             CCChHHHHH-HHHHcCCChh-hhh-hcCCCC-eEEEecCChHHHHHHHHHhcCCceE---EeccCCCcEEeCCCCCCccc
Q 021397           12 LPLPEAFLD-FLKENGLDPS-VYS-AADSTP-RYIRLKTGNEADLEEIEAELKCKLE---KVVWLSGFYSLPPDIKIATS   84 (313)
Q Consensus        12 ys~P~w~~~-~~~~~g~~~~-~~~-~~~~~~-~~~Rvn~~~~~~~~~L~~~~g~~~~---~~~~~~~~~~l~~~~~~~~~   84 (313)
                      +++|+||++ |.+.+|.+.. ++. .++++| .++|||+.+.+   .+.+..|+.++   +++|+|++++ .  ..+..+
T Consensus         6 ~~~P~w~~~~~~~~~g~e~~~~~~a~~~~~~~~~lRvN~lk~~---~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~   79 (456)
T 3m4x_A            6 TTLPQQFIKKYRLLLGEEASDFFSALEQGSVKKGFRWNPLKPA---GLDMVQTYHSEELQPAPYSNEGFL-G--TVNGKS   79 (456)
T ss_dssp             -CCCHHHHHHHHHHHGGGHHHHHHHHHHCCCCCEEECCTTSTT---HHHHHHHHTCSSCCBCTTCTTEEE-S--CCCTTS
T ss_pred             hhChHHHHHHHHHHhCHHHHHHHHHcCCCCCCcEEEEcCccHH---HHHHhcCCcccccCCCCCCcceEE-c--CCCCCC
Confidence            689999999 7778896633 443 457888 99999986642   22212255556   8999999988 3  246899


Q ss_pred             ccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        85 ~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      +.|.+|++++||++||+++.++++++|++|||+|||||+||+++|+.+++.+.|+|+|+|+.|++.+++|++++|+. ++
T Consensus        80 ~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv  158 (456)
T 3m4x_A           80 FLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NA  158 (456)
T ss_dssp             HHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SE
T ss_pred             hHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Confidence            99999999999999999999999999999999999999999999999987789999999999999999999999996 79


Q ss_pred             EEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCccee
Q 021397          165 RLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELI  235 (313)
Q Consensus       165 ~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~  235 (313)
                      .++++|+.        .||.|++| ||    |++|+++++|++...|+..  ........|.+++..+.++++|      
T Consensus       159 ~v~~~Da~~l~~~~~~~FD~Il~DaPC----Sg~G~~rr~p~~~~~~~~~--~~~~l~~~Q~~iL~~a~~~Lkp------  226 (456)
T 3m4x_A          159 IVTNHAPAELVPHFSGFFDRIVVDAPC----SGEGMFRKDPNAIKEWTEE--SPLYCQKRQQEILSSAIKMLKN------  226 (456)
T ss_dssp             EEECCCHHHHHHHHTTCEEEEEEECCC----CCGGGTTTCHHHHHHCCTT--HHHHHHHHHHHHHHHHHHTEEE------
T ss_pred             EEEeCCHHHhhhhccccCCEEEECCCC----CCccccccCHHHhhhcCHH--HHHHHHHHHHHHHHHHHHhcCC------
Confidence            99999973        47788888 88    9999999999986666554  4455678888999999998866      


Q ss_pred             EeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          236 FYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       236 ~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                           ||+||||||| ++|+|||++|.+.+++
T Consensus       227 -----GG~LvYsTCs-~~~eEne~vv~~~l~~  252 (456)
T 3m4x_A          227 -----KGQLIYSTCT-FAPEENEEIISWLVEN  252 (456)
T ss_dssp             -----EEEEEEEESC-CCGGGTHHHHHHHHHH
T ss_pred             -----CcEEEEEEee-cccccCHHHHHHHHHh
Confidence                 9999999999 9999999999776654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.1e-39  Score=317.40  Aligned_cols=239  Identities=18%  Similarity=0.225  Sum_probs=204.7

Q ss_pred             ccccCCCChHHHHH-HHHHcCCChh--hhh-hc-CCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCC
Q 021397            7 GEISKLPLPEAFLD-FLKENGLDPS--VYS-AA-DSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPD   78 (313)
Q Consensus         7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~-~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~   78 (313)
                      .++.+||+|+|+++ |.+.+| +.+  ++. .+ .++|+++|+|+   +++++.+.|+++ |+.+++.+|+|+++.+...
T Consensus       150 ~~~~~~~~P~w~~~~~~~~~g-~~~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~  227 (450)
T 2yxl_A          150 ELEWKYLAPSWLIERVKGILG-DETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEED-GVEVVRSERVPTILKIKGP  227 (450)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHG-GGHHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHT-TCCEEECSSCTTEEEEESC
T ss_pred             hhhhHhcCcHHHHHHHHHHhh-HHHHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhC-CccceecCccCceEEeCCC
Confidence            36778999999999 788899 433  443 46 78999999997   457788888876 9999999999999999655


Q ss_pred             CCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397           79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus        79 ~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      ..+..++.|.+|++++||.+|++++.++++++|++|||+|||||++|.++++.+++.+.|+|+|+++.+++.++++++++
T Consensus       228 ~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~  307 (450)
T 2yxl_A          228 YNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM  307 (450)
T ss_dssp             CCTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CCcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999999999999876689999999999999999999999


Q ss_pred             CCCCcEEEEecCCCC---------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397          159 ALGDRCRLFVADGTT---------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR  228 (313)
Q Consensus       159 g~~~~v~~~~~D~~~---------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r  228 (313)
                      |+. +++++++|+..         ||.+++| ||    |++|+++++|++.  |.....+.......|..++..+.++++
T Consensus       308 g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc----sg~g~~~~~pd~~--~~~~~~~~~~l~~~q~~iL~~a~~~Lk  380 (450)
T 2yxl_A          308 GIK-IVKPLVKDARKAPEIIGEEVADKVLLDAPC----TSSGTIGKNPELR--WRLREDKINEMSQLQRELLESAARLVK  380 (450)
T ss_dssp             TCC-SEEEECSCTTCCSSSSCSSCEEEEEEECCC----CCGGGTTTSTTHH--HHCCTTSHHHHHHHHHHHHHHHHTTEE
T ss_pred             CCC-cEEEEEcChhhcchhhccCCCCEEEEcCCC----CCCeeeccChhhh--hhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            986 79999999854         4556666 66    8888999999984  544445556667788888888888876


Q ss_pred             ccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397          229 SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD  266 (313)
Q Consensus       229 ~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~  266 (313)
                      |           ||+|+|+||| ++|+|||+++...++
T Consensus       381 p-----------GG~lvy~tcs-~~~~ene~~v~~~l~  406 (450)
T 2yxl_A          381 P-----------GGRLLYTTCS-IFKEENEKNIRWFLN  406 (450)
T ss_dssp             E-----------EEEEEEEESC-CCGGGTHHHHHHHHH
T ss_pred             C-----------CcEEEEEeCC-CChhhHHHHHHHHHH
Confidence            5           9999999999 999999999965544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=100.00  E-value=7.4e-39  Score=309.74  Aligned_cols=236  Identities=19%  Similarity=0.238  Sum_probs=203.8

Q ss_pred             cccCCCChHHHHH-HHHHcCCChh-hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCCCC
Q 021397            8 EISKLPLPEAFLD-FLKENGLDPS-VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKI   81 (313)
Q Consensus         8 ~~~~ys~P~w~~~-~~~~~g~~~~-~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~~~   81 (313)
                      ++ +||+|+|+++ |.+.+|.+.. ++. .+.++|+++|+|+   +.+++.+.|.++ |+.+++.+|+|+++.+.....+
T Consensus       140 ~~-~~~~p~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~  217 (429)
T 1sqg_A          140 DA-RYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEA-GMKGFPHADYPDAVRLETPAPV  217 (429)
T ss_dssp             GG-GGCSCHHHHHHHHHHCTTTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHT-TCCEECCTTCTTEEEESSCCCG
T ss_pred             hh-hhcCcHHHHHHHHHHhhHHHHHHHHhCCCCCCeEEEEcCCCCCHHHHHHHHHhC-CCceeecCCCCCEEEECCCCCc
Confidence            45 8999999999 8888995432 443 4588999999997   467788888876 9999999999999999876778


Q ss_pred             cccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ..+++|..|.+++||.+|++++.++++++|++|||+|||||++|.++++.+++ +.|+|+|+++.+++.++++++++|+ 
T Consensus       218 ~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-  295 (429)
T 1sqg_A          218 HALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-  295 (429)
T ss_dssp             GGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-
T ss_pred             ccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-
Confidence            99999999999999999999999999999999999999999999999999865 8999999999999999999999998 


Q ss_pred             CcEEEEecCCC---------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccC
Q 021397          162 DRCRLFVADGT---------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH  231 (313)
Q Consensus       162 ~~v~~~~~D~~---------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~  231 (313)
                       +++++++|+.         .||.+++| ||    +++|+++++|++  .|.....+.......|..++..+.++++|  
T Consensus       296 -~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc----sg~g~~~~~p~~--~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp--  366 (429)
T 1sqg_A          296 -KATVKQGDGRYPSQWCGEQQFDRILLDAPC----SATGVIRRHPDI--KWLRRDRDIPELAQLQSEILDAIWPHLKT--  366 (429)
T ss_dssp             -CCEEEECCTTCTHHHHTTCCEEEEEEECCC----CCGGGTTTCTTH--HHHCCTTHHHHHHHHHHHHHHHHGGGEEE--
T ss_pred             -CeEEEeCchhhchhhcccCCCCEEEEeCCC----CcccccCCCcch--hhcCCHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence             4789999984         35667777 77    888999999998  45555555666678899999998888866  


Q ss_pred             cceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397          232 PELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD  266 (313)
Q Consensus       232 ~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~  266 (313)
                               ||+|+|+||| ++|+|||+++...++
T Consensus       367 ---------GG~lvystcs-~~~~ene~~v~~~l~  391 (429)
T 1sqg_A          367 ---------GGTLVYATCS-VLPEENSLQIKAFLQ  391 (429)
T ss_dssp             ---------EEEEEEEESC-CCGGGTHHHHHHHHH
T ss_pred             ---------CCEEEEEECC-CChhhHHHHHHHHHH
Confidence                     9999999999 999999999865544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=100.00  E-value=1.8e-38  Score=294.37  Aligned_cols=214  Identities=18%  Similarity=0.237  Sum_probs=167.4

Q ss_pred             cCCCCeEEEecC---ChHHHHHHHHHhcCCceEEecc------------------CCCcEEeCCCCCCcccccccCCeEE
Q 021397           35 ADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVW------------------LSGFYSLPPDIKIATSMAYKQGKIY   93 (313)
Q Consensus        35 ~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~------------------~~~~~~l~~~~~~~~~~~~~~G~~~   93 (313)
                      ..++|+++|||+   +++++++.|+++ |+.+++.+|                  +|+++.++....+..+++|++|+++
T Consensus         7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~   85 (309)
T 2b9e_A            7 ASQLPRFVRVNTLKTCSDDVVDYFKRQ-GFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLI   85 (309)
T ss_dssp             --CCCEEEEECTTTCCHHHHHHHHHHT-TCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEE
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHhC-CCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEE
Confidence            367899999996   567888888876 998888744                  4677777765678999999999999


Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +||.+|++++.++++++|++|||+|||||+||+++++.+++.+.|+|+|+++.|++.+++|++++|+. +++++++|+..
T Consensus        86 ~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~  164 (309)
T 2b9e_A           86 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLA  164 (309)
T ss_dssp             ECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             EECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHh
Confidence            99999999999999999999999999999999999999977799999999999999999999999996 79999999743


Q ss_pred             ----------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCc
Q 021397          174 ----------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSG  242 (313)
Q Consensus       174 ----------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG  242 (313)
                                ||.|++| ||    |++|+++++|+....+.....+......+|.+++.++.+++           + ||
T Consensus       165 ~~~~~~~~~~fD~Vl~D~Pc----Sg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-----------~-gG  228 (309)
T 2b9e_A          165 VSPSDPRYHEVHYILLDPSC----SGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP-----------S-LQ  228 (309)
T ss_dssp             SCTTCGGGTTEEEEEECCCC----CC------------------CCHHHHHHHHHHHHHHHTTCT-----------T-CC
T ss_pred             cCccccccCCCCEEEEcCCc----CCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc-----------C-CC
Confidence                      4567777 77    88899999998622111123344556788899888887754           3 89


Q ss_pred             EEEEEcCCCCCcccchhhhhhcccc
Q 021397          243 IVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       243 ~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      +||||||| ++|+|||++|.+.+.+
T Consensus       229 ~lvYsTCs-~~~~Ene~~v~~~l~~  252 (309)
T 2b9e_A          229 RLVYSTCS-LCQEENEDVVRDALQQ  252 (309)
T ss_dssp             EEEEEESC-CCGGGTHHHHHHHHTT
T ss_pred             EEEEECCC-CChHHhHHHHHHHHHh
Confidence            99999999 9999999999766554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=100.00  E-value=1.3e-36  Score=286.47  Aligned_cols=171  Identities=24%  Similarity=0.304  Sum_probs=144.0

Q ss_pred             CCCCcccccccCCe-----EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397           78 DIKIATSMAYKQGK-----IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus        78 ~~~~~~~~~~~~G~-----~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      .+.+..++.|.+|.     ||+||.+||+++.+|+++||++|||+||||||||++|++.++ .+.|+|+|+++.|++.++
T Consensus       111 ~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~  189 (359)
T 4fzv_A          111 RGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQ  189 (359)
T ss_dssp             TTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHH
T ss_pred             CCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHH
Confidence            34577778777665     788889999999999999999999999999999999999764 478999999999999999


Q ss_pred             HHHHHcCCC-----CcEEEEecCCC--------CCCccccc-cccCccccc--ccccccccccccccccchhHHHHHHHH
Q 021397          153 TLLQKYALG-----DRCRLFVADGT--------TFSLAPLR-LLLDPGSCN--SVLQEKDDTFREWTSRIPWKERKRAVK  216 (313)
Q Consensus       153 ~~~~~~g~~-----~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~s--g~l~~~p~~~~~w~~~~~~~~~~~~~q  216 (313)
                      +|++++|..     .++.++..|++        .||.|++| ||    |++  |+++++|++...|++  .+......+|
T Consensus       190 ~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPC----Sg~g~g~~r~~~~~~~~~~~--~~~~~l~~lQ  263 (359)
T 4fzv_A          190 KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPC----TTDRHSLHEEENNIFKRSRK--KERQILPVLQ  263 (359)
T ss_dssp             HHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCC----CCHHHHTTCCTTCTTSGGGH--HHHHTHHHHH
T ss_pred             HHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCcc----CCCCCcccccChhhhhhCCH--HHHHHHHHHH
Confidence            999999763     46899999985        36677777 77    775  577888998655543  4445567889


Q ss_pred             HHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          217 ARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       217 ~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      .++|.++.++++|           ||+||||||| ++|+|||+||...+++
T Consensus       264 ~~iL~~a~~~lkp-----------GG~LVYsTCS-l~~~ENE~vV~~~L~~  302 (359)
T 4fzv_A          264 VQLLAAGLLATKP-----------GGHVVYSTCS-LSHLQNEYVVQGAIEL  302 (359)
T ss_dssp             HHHHHHHHHTEEE-----------EEEEEEEESC-CCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-----------CcEEEEEeCC-CchhhCHHHHHHHHHh
Confidence            9999999998866           9999999999 9999999999766653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=100.00  E-value=4.3e-34  Score=260.63  Aligned_cols=207  Identities=18%  Similarity=0.226  Sum_probs=163.8

Q ss_pred             cCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEe-CCCCCCcccccccCCeEEEecHHHHHHHHhcCCCC
Q 021397           35 ADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSL-PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISA  110 (313)
Q Consensus        35 ~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~  110 (313)
                      ..++|+++|+|+   +++++.+.|++. |+.+++ +|.|+++.+ ..+..+..++.|..|++++||.+|++++.++++++
T Consensus         6 ~~~~~~~~rvn~~~~~~~~~~~~l~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~   83 (274)
T 3ajd_A            6 KGEKMQFIRVNTLKINPEVLKKRLENK-GVVLEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPRE   83 (274)
T ss_dssp             ---CCEEEEECTTTCCHHHHHHHHHTT-TCEEEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCCCT
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHHC-CCeecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCCCC
Confidence            367899999996   567788888876 999988 999999998 34456889999999999999999999999999999


Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----------CCCcccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-----------TFSLAPL  179 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----------~~d~v~~  179 (313)
                      |++|||+|||||++|.++++.+++.+.|+|+|+++.+++.+++|++++|+. +++++++|+.           .||.+++
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKILL  162 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEEE
Confidence            999999999999999999999876689999999999999999999999986 7999999974           3566777


Q ss_pred             c-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccch
Q 021397          180 R-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNS  258 (313)
Q Consensus       180 D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene  258 (313)
                      | ||    ++.|+++++|    .|+....  ......|.+++..+.++++|           ||+++|+||| ++++|||
T Consensus       163 d~Pc----s~~g~~~~~p----~~~~~~~--~~~~~~~~~~l~~~~~~Lkp-----------gG~lv~stcs-~~~~ene  220 (274)
T 3ajd_A          163 DAPC----SGNIIKDKNR----NVSEEDI--KYCSLRQKELIDIGIDLLKK-----------DGELVYSTCS-MEVEENE  220 (274)
T ss_dssp             EECC----C----------------HHHH--TGGGTCHHHHHHHHHHHEEE-----------EEEEEEEESC-CCTTSSH
T ss_pred             cCCC----CCCcccccCC----CCCHHHH--HHHHHHHHHHHHHHHHhCCC-----------CCEEEEEECC-CChHHhH
Confidence            7 66    7788898887    4543322  22234567777777777765           9999999999 9999999


Q ss_pred             hhhhhccc
Q 021397          259 EVSSSGYD  266 (313)
Q Consensus       259 ~vv~~~~~  266 (313)
                      ++|.+.++
T Consensus       221 ~~v~~~l~  228 (274)
T 3ajd_A          221 EVIKYILQ  228 (274)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99966554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.61  E-value=1.8e-15  Score=144.33  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=105.5

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      -..++++|+|+.|+.+..++...+  ++|++|||+|||+|++|+++++. +  ..|+|+|+|+.+++.+++|++.+|+..
T Consensus       189 ~~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~~  263 (393)
T 4dmg_A          189 LALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLRV  263 (393)
T ss_dssp             TTTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred             chhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence            356789999999999998887664  47999999999999999999985 2  459999999999999999999999863


Q ss_pred             cEEEEecCCCC--------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcc
Q 021397          163 RCRLFVADGTT--------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPE  233 (313)
Q Consensus       163 ~v~~~~~D~~~--------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~E  233 (313)
                        .+.++|+..        ||.+.+| |+|                   .............+..++..+.++++|    
T Consensus       264 --~~~~~D~~~~l~~~~~~fD~Ii~dpP~f-------------------~~~~~~~~~~~~~~~~ll~~a~~~Lkp----  318 (393)
T 4dmg_A          264 --DIRHGEALPTLRGLEGPFHHVLLDPPTL-------------------VKRPEELPAMKRHLVDLVREALRLLAE----  318 (393)
T ss_dssp             --EEEESCHHHHHHTCCCCEEEEEECCCCC-------------------CSSGGGHHHHHHHHHHHHHHHHHTEEE----
T ss_pred             --cEEEccHHHHHHHhcCCCCEEEECCCcC-------------------CCCHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence              466888743        4555555 332                   222222333445566677777777755    


Q ss_pred             eeEeecCCcEEEEEcCCCCCcccch
Q 021397          234 LIFYGRRSGIVGLTKEEIYQSVCNS  258 (313)
Q Consensus       234 l~~~~k~gG~lvysTcs~~~p~Ene  258 (313)
                             ||+|+|+||| ..+.+++
T Consensus       319 -------GG~Lv~~s~s-~~~~~~~  335 (393)
T 4dmg_A          319 -------EGFLWLSSCS-YHLRLED  335 (393)
T ss_dssp             -------EEEEEEEECC-TTSCHHH
T ss_pred             -------CCEEEEEECC-CCCCHHH
Confidence                   9999999999 7776665

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.56  E-value=4e-14  Score=125.60  Aligned_cols=77  Identities=26%  Similarity=0.301  Sum_probs=62.2

Q ss_pred             ecHHHHHHHHhcC---CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           95 IDAASGAAVSALN---ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        95 Qd~ss~~~~~~l~---~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..-+..+...++   +++|++|||+|||||++|.++|+.+++.|+|+|+|+|+.|++.+.+.+++.   .|+.++.+|+
T Consensus        58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da  134 (232)
T 3id6_C           58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADA  134 (232)
T ss_dssp             TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCT
T ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccc
Confidence            4444444444444   889999999999999999999999988899999999999987776666553   3799999999


Q ss_pred             CCC
Q 021397          172 TTF  174 (313)
Q Consensus       172 ~~~  174 (313)
                      +..
T Consensus       135 ~~~  137 (232)
T 3id6_C          135 RFP  137 (232)
T ss_dssp             TCG
T ss_pred             ccc
Confidence            754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.52  E-value=3.3e-13  Score=118.03  Aligned_cols=120  Identities=15%  Similarity=0.164  Sum_probs=83.2

Q ss_pred             CChHHHHHHHHHhcCCc-----------eEEeccCCCcEEeCCCCCCcccccccCCeEEEecHHH-HHHHHhcC--CCCC
Q 021397           46 TGNEADLEEIEAELKCK-----------LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS-GAAVSALN--ISAG  111 (313)
Q Consensus        46 ~~~~~~~~~L~~~~g~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~~~Qd~ss-~~~~~~l~--~~~g  111 (313)
                      .+++++++.|++. |+.           +.+..|.+..       .....+.+..+..+++++.. ..+...+.  ++++
T Consensus         7 ~~~~~l~~~l~~~-g~~~~~~~~~a~~~~~r~~f~~~~-------~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~   78 (226)
T 1i1n_A            7 ASHSELIHNLRKN-GIIKTDKVFEVMLATDRSHYAKCN-------PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG   78 (226)
T ss_dssp             SSHHHHHHHHHHT-TSCCSHHHHHHHHTSCGGGTCSSC-------TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTT
T ss_pred             chHHHHHHHHHHc-CCcCCHHHHHHHHhCCHHHcCCCc-------cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCC
Confidence            4567778888765 753           1112222221       12222333333345555552 23444554  7889


Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEecCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL----GDRCRLFVADGTT  173 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~~v~~~~~D~~~  173 (313)
                      .+|||+|||+|.++.++++.++..++|+++|+++.+++.+++++++.+.    .+++.++.+|+..
T Consensus        79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            9999999999999999999886667999999999999999999998764    2479999999864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.49  E-value=1.1e-13  Score=131.87  Aligned_cols=138  Identities=16%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             ccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        85 ~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      ..+++|+|+.|.....++..++  ++|++|||+|||+|+++..+++.  +..+|+|+|+|+.+++.+++|++.+|+.+++
T Consensus       194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v  269 (396)
T 2as0_A          194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM  269 (396)
T ss_dssp             SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred             cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence            4567799988888877776553  57899999999999999999985  2468999999999999999999999986579


Q ss_pred             EEEecCCC-----------CCCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcc
Q 021397          165 RLFVADGT-----------TFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPE  233 (313)
Q Consensus       165 ~~~~~D~~-----------~~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~E  233 (313)
                      +++++|+.           .||.+.+||.                  .|.............+..++..+.++++|    
T Consensus       270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP------------------~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----  327 (396)
T 2as0_A          270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPP------------------AFVQHEKDLKAGLRAYFNVNFAGLNLVKD----  327 (396)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEEEEEECCC------------------CSCSSGGGHHHHHHHHHHHHHHHHTTEEE----
T ss_pred             eEEECCHHHHHHHHHhhCCCCCEEEECCC------------------CCCCCHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence            99999974           3455555522                  01111111222233444555666666654    


Q ss_pred             eeEeecCCcEEEEEcCCCCCccc
Q 021397          234 LIFYGRRSGIVGLTKEEIYQSVC  256 (313)
Q Consensus       234 l~~~~k~gG~lvysTcs~~~p~E  256 (313)
                             ||+++|++|+ .+..+
T Consensus       328 -------gG~lv~~~~~-~~~~~  342 (396)
T 2as0_A          328 -------GGILVTCSCS-QHVDL  342 (396)
T ss_dssp             -------EEEEEEEECC-TTSCH
T ss_pred             -------CcEEEEEECC-CCCCH
Confidence                   9999999998 55433

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.49  E-value=7.6e-14  Score=132.50  Aligned_cols=136  Identities=16%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      ....+++|+|+.|...+.+++.+    +|++|||+|||+|+++..+++.   ...|+|+|+|+.+++.+++|++.+|+. 
T Consensus       186 ~~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~-  257 (382)
T 1wxx_A          186 LRAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-  257 (382)
T ss_dssp             CSTTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-
T ss_pred             chhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence            34567889999998887765544    7889999999999999999987   368999999999999999999999986 


Q ss_pred             cEEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          163 RCRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       163 ~v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                      +++++++|+.           .||.+.+| |.+                   .............+..++..+.++++| 
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~Lkp-  317 (382)
T 1wxx_A          258 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAF-------------------AKGKKDVERAYRAYKEVNLRAIKLLKE-  317 (382)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS-------------------CCSTTSHHHHHHHHHHHHHHHHHTEEE-
T ss_pred             CceEEECCHHHHHHHHHhcCCCeeEEEECCCCC-------------------CCChhHHHHHHHHHHHHHHHHHHhcCC-
Confidence            5999999974           34555555 321                   111112223334455566667777655 


Q ss_pred             CcceeEeecCCcEEEEEcCCCCCcccc
Q 021397          231 HPELIFYGRRSGIVGLTKEEIYQSVCN  257 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs~~~p~En  257 (313)
                                ||++++++|+ .+..++
T Consensus       318 ----------gG~l~~~~~~-~~~~~~  333 (382)
T 1wxx_A          318 ----------GGILATASCS-HHMTEP  333 (382)
T ss_dssp             ----------EEEEEEEECC-TTSCHH
T ss_pred             ----------CCEEEEEECC-CCCCHH
Confidence                      9999999999 665554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.48  E-value=1.7e-13  Score=139.54  Aligned_cols=142  Identities=16%  Similarity=0.103  Sum_probs=105.3

Q ss_pred             cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 021397           84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-D  162 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~  162 (313)
                      ...+++|+|..|+...+++....   +|.+|||+|||+|+++++++..  +..+|+++|+|+.+++.+++|++.+|+. +
T Consensus       516 ~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~  590 (703)
T 3v97_A          516 TDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGR  590 (703)
T ss_dssp             SSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred             cccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence            46779999999999998887754   6899999999999999999873  3467999999999999999999999986 5


Q ss_pred             cEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcc
Q 021397          163 RCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPE  233 (313)
Q Consensus       163 ~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~E  233 (313)
                      +++++++|+.        .||.|++| |+|..         .......|        .....+..++..+.++++|    
T Consensus       591 ~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~---------~~~~~~~~--------~~~~~~~~ll~~a~~~Lkp----  649 (703)
T 3v97_A          591 AHRLIQADCLAWLREANEQFDLIFIDPPTFSN---------SKRMEDAF--------DVQRDHLALMKDLKRLLRA----  649 (703)
T ss_dssp             TEEEEESCHHHHHHHCCCCEEEEEECCCSBC----------------CC--------BHHHHHHHHHHHHHHHEEE----
T ss_pred             ceEEEecCHHHHHHhcCCCccEEEECCccccC---------CccchhHH--------HHHHHHHHHHHHHHHhcCC----
Confidence            7999999974        46777777 45320         00000011        1223455566667777755    


Q ss_pred             eeEeecCCcEEEEEcCCCCCcccchh
Q 021397          234 LIFYGRRSGIVGLTKEEIYQSVCNSE  259 (313)
Q Consensus       234 l~~~~k~gG~lvysTcs~~~p~Ene~  259 (313)
                             ||+|++|+|+ -.-..+++
T Consensus       650 -------gG~L~~s~~~-~~~~~~~~  667 (703)
T 3v97_A          650 -------GGTIMFSNNK-RGFRMDLD  667 (703)
T ss_dssp             -------EEEEEEEECC-TTCCCCHH
T ss_pred             -------CcEEEEEECC-cccccCHH
Confidence                   9999999998 44444443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.47  E-value=6.5e-14  Score=133.55  Aligned_cols=86  Identities=16%  Similarity=0.088  Sum_probs=74.6

Q ss_pred             cccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC-
Q 021397           82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-  160 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-  160 (313)
                      .....+++|+|..|....+++..+   .+|.+|||+|||+|++++++++.  +...|+|+|+|+.+++.+++|++.+|+ 
T Consensus       195 ~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~  269 (396)
T 3c0k_A          195 DIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD  269 (396)
T ss_dssp             CTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             eccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344677889999999988887766   57899999999999999999984  236899999999999999999999998 


Q ss_pred             CCcEEEEecCCC
Q 021397          161 GDRCRLFVADGT  172 (313)
Q Consensus       161 ~~~v~~~~~D~~  172 (313)
                      .++++++++|+.
T Consensus       270 ~~~v~~~~~D~~  281 (396)
T 3c0k_A          270 LSKAEFVRDDVF  281 (396)
T ss_dssp             GGGEEEEESCHH
T ss_pred             ccceEEEECCHH
Confidence            657999999973

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.44  E-value=4.9e-13  Score=120.58  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++..+.++...  ++||.+|||+|||+|..+..+++..+. +.+|+|+|+|+.|++.++++++..+...+|+++++|+..
T Consensus        57 ~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           57 ISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             HHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            44444555444  578999999999999999999987653 358999999999999999999998887789999999988


Q ss_pred             CCccccccccCcccccccccc
Q 021397          174 FSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      ++...+|.    +.+..++..
T Consensus       135 ~~~~~~d~----v~~~~~l~~  151 (261)
T 4gek_A          135 IAIENASM----VVLNFTLQF  151 (261)
T ss_dssp             CCCCSEEE----EEEESCGGG
T ss_pred             cccccccc----ceeeeeeee
Confidence            77543342    255555543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.41  E-value=5.5e-13  Score=126.79  Aligned_cols=134  Identities=15%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      ...++++|+|..|.....++...+  .+|.+|||+|||+|++++.+|+.  +...|+++|+|+.+++.+++|++.+|+.+
T Consensus       187 ~~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~  262 (385)
T 2b78_A          187 LNDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDM  262 (385)
T ss_dssp             SSSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred             ccccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            345667799988888877777665  57899999999999999999974  23589999999999999999999999865


Q ss_pred             -cEEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397          163 -RCRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS  229 (313)
Q Consensus       163 -~v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~  229 (313)
                       +++++++|+.           .||.+.+| |.+..  ..+   ...              .......+++..+.++++|
T Consensus       263 ~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~--~~~---~~~--------------~~~~~~~~ll~~~~~~L~p  323 (385)
T 2b78_A          263 ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFAR--NKK---EVF--------------SVSKDYHKLIRQGLEILSE  323 (385)
T ss_dssp             TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------CCC--------------CHHHHHHHHHHHHHHTEEE
T ss_pred             cceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCC--Chh---hHH--------------HHHHHHHHHHHHHHHhcCC
Confidence             7999999973           35666666 33110  000   001              1112233444555666654


Q ss_pred             cCcceeEeecCCcEEEEEcCC
Q 021397          230 EHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       230 ~~~El~~~~k~gG~lvysTcs  250 (313)
                                 ||+|++++|+
T Consensus       324 -----------gG~l~~~~~~  333 (385)
T 2b78_A          324 -----------NGLIIASTNA  333 (385)
T ss_dssp             -----------EEEEEEEECC
T ss_pred             -----------CcEEEEEeCC
Confidence                       9999999998

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.40  E-value=7.5e-13  Score=115.69  Aligned_cols=82  Identities=13%  Similarity=0.125  Sum_probs=72.2

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ..+++..++++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            45667777888777777788999999999999999999987656899999999999999999999999977799999997


Q ss_pred             CC
Q 021397          172 TT  173 (313)
Q Consensus       172 ~~  173 (313)
                      ..
T Consensus       120 ~~  121 (221)
T 3u81_A          120 QD  121 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.39  E-value=5.4e-12  Score=109.30  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +......+...+++.++++|||+|||+|..+..+++.   .++|+|+|+|+.+++.++++++++|+.++++++.+|+..
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            3344455667788999999999999999999999987   379999999999999999999999987579999999876

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.39  E-value=4.4e-12  Score=112.52  Aligned_cols=94  Identities=18%  Similarity=0.264  Sum_probs=77.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      ...+...+.+.++.+|||+|||+|..+..+++..+  ..|+|+|+|+.+++.++++++..|+.++++++.+|+..++.  
T Consensus        25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--  100 (256)
T 1nkv_A           25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--  100 (256)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--
Confidence            34456677888999999999999999999998863  68999999999999999999999987689999999987653  


Q ss_pred             cccccCccccccccccccc
Q 021397          179 LRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~  197 (313)
                       +..||.+.|.+++.+.++
T Consensus       101 -~~~fD~V~~~~~~~~~~~  118 (256)
T 1nkv_A          101 -NEKCDVAACVGATWIAGG  118 (256)
T ss_dssp             -SSCEEEEEEESCGGGTSS
T ss_pred             -CCCCCEEEECCChHhcCC
Confidence             555666677777655443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.38  E-value=2.9e-12  Score=114.78  Aligned_cols=84  Identities=11%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             CCeEEEecHH-------HHHHHHhcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397           89 QGKIYGIDAA-------SGAAVSALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus        89 ~G~~~~Qd~s-------s~~~~~~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .++...|+..       +.+++.++.++ ++.+|||+|||+|..+..+++..+  +.|+|+|+++.+++.+++|++.+++
T Consensus        20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~   97 (259)
T 3lpm_A           20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQL   97 (259)
T ss_dssp             TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCC
Confidence            4555556655       78888899888 999999999999999999998732  4999999999999999999999999


Q ss_pred             CCcEEEEecCCCCC
Q 021397          161 GDRCRLFVADGTTF  174 (313)
Q Consensus       161 ~~~v~~~~~D~~~~  174 (313)
                      .++++++++|+..+
T Consensus        98 ~~~v~~~~~D~~~~  111 (259)
T 3lpm_A           98 EDQIEIIEYDLKKI  111 (259)
T ss_dssp             TTTEEEECSCGGGG
T ss_pred             cccEEEEECcHHHh
Confidence            87899999998643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.35  E-value=1.3e-11  Score=106.13  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |.+ .++.....+...+.++++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+++++++.++ ++++++.+
T Consensus        21 g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~   97 (204)
T 3e05_A           21 KLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEA   97 (204)
T ss_dssp             TTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEEC
T ss_pred             CcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeC
Confidence            666 4555556667778899999999999999999999999853 47999999999999999999999998 47999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus        98 d~~~  101 (204)
T 3e05_A           98 FAPE  101 (204)
T ss_dssp             CTTT
T ss_pred             Chhh
Confidence            9854

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.34  E-value=3.4e-12  Score=111.25  Aligned_cols=80  Identities=11%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++...++++..++...++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|+..
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            44666777776666778899999999999999999998865689999999999999999999999997779999999843

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.33  E-value=3.7e-12  Score=112.82  Aligned_cols=67  Identities=25%  Similarity=0.354  Sum_probs=60.2

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.++||++|||+|||+|..+.++|+..++.|+|+|+|+++.|++.+++++++.+   |+..+.+|+...+
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~  139 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPE  139 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGG
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCcc
Confidence            568999999999999999999999999999999999999999999998876543   7899999987643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.32  E-value=1.5e-11  Score=112.27  Aligned_cols=123  Identities=13%  Similarity=0.060  Sum_probs=91.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+.+++|.+|||+|||+|..+..+++..+  ..|+|+|+|+.+++.++++++..|+.++++++.+|+..+     +
T Consensus        63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~  135 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----D  135 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----C
T ss_pred             HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----C
Confidence            456677889999999999999999999999875  689999999999999999999999977899999999776     4


Q ss_pred             cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..||.+.+.+++.+.|+..   ......      .....+....+++           ||||+++..+.+
T Consensus       136 ~~fD~v~~~~~~~~~~d~~---~~~~~~------~~~~~l~~~~~~L-----------kpgG~l~i~~~~  185 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGA---GDAGFE------RYDTFFKKFYNLT-----------PDDGRMLLHTIT  185 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCS---SCCCTT------HHHHHHHHHHHSS-----------CTTCEEEEEEEE
T ss_pred             CCccEEEEcchHHhcCccc---cccchh------HHHHHHHHHHHhc-----------CCCcEEEEEEEe
Confidence            4455557777776665421   000000      0112223334444           559999998887

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.32  E-value=1.1e-11  Score=109.48  Aligned_cols=97  Identities=14%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .|++++..++..++++++.+|||+|||+|..+..+++..   ..|+++|+|+.+++.++++++..++. ++.++.+|+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~   80 (239)
T 1xxl_A            5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAES   80 (239)
T ss_dssp             -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTB
T ss_pred             ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEeccccc
Confidence            578899999999999999999999999999999998763   58999999999999999999999986 79999999987


Q ss_pred             CCccccccccCcccccccccccc
Q 021397          174 FSLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +++  .+..||.+.|..++.+.+
T Consensus        81 ~~~--~~~~fD~v~~~~~l~~~~  101 (239)
T 1xxl_A           81 LPF--PDDSFDIITCRYAAHHFS  101 (239)
T ss_dssp             CCS--CTTCEEEEEEESCGGGCS
T ss_pred             CCC--CCCcEEEEEECCchhhcc
Confidence            653  234555557766665444

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.32  E-value=2.1e-12  Score=115.18  Aligned_cols=80  Identities=11%  Similarity=0.128  Sum_probs=70.2

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++...+.++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|+..
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            44666777776766778899999999999999999998875689999999999999999999999997789999999854

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.32  E-value=9.7e-12  Score=106.16  Aligned_cols=69  Identities=23%  Similarity=0.418  Sum_probs=62.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++++++|||+|||+|..+..+++..++.+.|+|+|+++.+++.++++++..|+.++++++++|+..++
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   87 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD   87 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh
Confidence            467899999999999999999999986567999999999999999999999998668999999986553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.32  E-value=5.7e-12  Score=106.54  Aligned_cols=64  Identities=16%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+++|++|||+|||+|..+..+++.   .++|+|+|+|+.+++.++++++..++ +++++++.|...+
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l   82 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL   82 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH
Confidence            3578999999999999999999986   47999999999999999999999998 4799999777654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.31  E-value=9.7e-12  Score=110.88  Aligned_cols=108  Identities=11%  Similarity=0.179  Sum_probs=78.5

Q ss_pred             cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      .++|.....+.|......+...+.+.++.+|||+|||+|..+..+++..   ..|+++|+|+.+++.++++++..++. +
T Consensus        11 ~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~   86 (260)
T 1vl5_A           11 HHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-Q   86 (260)
T ss_dssp             ------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-S
T ss_pred             ceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-c
Confidence            3566667777777777788888888999999999999999999998763   48999999999999999999999886 7


Q ss_pred             EEEEecCCCCCCccccccccCccccccccccccc
Q 021397          164 CRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       164 v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      +.++.+|+..+++  .|..||.+.|..++.+.++
T Consensus        87 v~~~~~d~~~l~~--~~~~fD~V~~~~~l~~~~d  118 (260)
T 1vl5_A           87 VEYVQGDAEQMPF--TDERFHIVTCRIAAHHFPN  118 (260)
T ss_dssp             EEEEECCC-CCCS--CTTCEEEEEEESCGGGCSC
T ss_pred             eEEEEecHHhCCC--CCCCEEEEEEhhhhHhcCC
Confidence            9999999987663  2345565577766655443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.31  E-value=1.1e-11  Score=112.05  Aligned_cols=92  Identities=14%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             CcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-C
Q 021397           81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-A  159 (313)
Q Consensus        81 ~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g  159 (313)
                      ......+..+...+++..+..++..++++++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.+++++++. |
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g  160 (275)
T 1yb2_A           81 MYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD  160 (275)
T ss_dssp             GGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HHHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            344456677777788888888888999999999999999999999999998655579999999999999999999988 8


Q ss_pred             CCCcEEEEecCCCC
Q 021397          160 LGDRCRLFVADGTT  173 (313)
Q Consensus       160 ~~~~v~~~~~D~~~  173 (313)
                      .. +++++.+|+..
T Consensus       161 ~~-~v~~~~~d~~~  173 (275)
T 1yb2_A          161 IG-NVRTSRSDIAD  173 (275)
T ss_dssp             CT-TEEEECSCTTT
T ss_pred             CC-cEEEEECchhc
Confidence            64 79999999865

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.31  E-value=8.5e-12  Score=116.31  Aligned_cols=95  Identities=15%  Similarity=0.070  Sum_probs=78.8

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....++.|++..|......+...+. ..++.+|||+|||+|+.+..++..  + ..|+++|+|+.+++.+++|++.+++.
T Consensus       125 ~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~  201 (332)
T 2igt_A          125 FTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLE  201 (332)
T ss_dssp             CCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCT
T ss_pred             cCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3456788999999988777777664 457889999999999999999984  2 49999999999999999999999986


Q ss_pred             C-cEEEEecCCC-----------CCCccccc
Q 021397          162 D-RCRLFVADGT-----------TFSLAPLR  180 (313)
Q Consensus       162 ~-~v~~~~~D~~-----------~~d~v~~D  180 (313)
                      + +++++++|+.           .||.+.+|
T Consensus       202 ~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          202 QAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             TSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             ccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            4 4999999973           36666666

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.30  E-value=2.4e-11  Score=111.66  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             cHHHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           96 DAASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        96 d~ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.....+...+. ++++.+|||+|||+|..+..+++..+  ..|+|+|+|+.+++.++++++..|+.++++++.+|+..+
T Consensus       102 ~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  179 (312)
T 3vc1_A          102 SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT  179 (312)
T ss_dssp             HHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC
Confidence            333444566676 78899999999999999999999863  689999999999999999999999877899999999876


Q ss_pred             CccccccccCcccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~  194 (313)
                      ++  .+..||.+.+..++.+
T Consensus       180 ~~--~~~~fD~V~~~~~l~~  197 (312)
T 3vc1_A          180 PF--DKGAVTASWNNESTMY  197 (312)
T ss_dssp             CC--CTTCEEEEEEESCGGG
T ss_pred             CC--CCCCEeEEEECCchhh
Confidence            53  2345555566665543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.30  E-value=1.5e-11  Score=102.76  Aligned_cols=81  Identities=14%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      +|.+..++.. ..+...+.+.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..++.+++ ++.
T Consensus         5 ~g~~t~~~~~-~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~   81 (178)
T 3hm2_A            5 DGQLTKQHVR-ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQ   81 (178)
T ss_dssp             -CCSHHHHHH-HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEE
T ss_pred             CCcccHHHHH-HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEe
Confidence            3454444433 4445566888999999999999999999998764 479999999999999999999999987578 888


Q ss_pred             cCCC
Q 021397          169 ADGT  172 (313)
Q Consensus       169 ~D~~  172 (313)
                      +|+.
T Consensus        82 ~d~~   85 (178)
T 3hm2_A           82 QGAP   85 (178)
T ss_dssp             CCTT
T ss_pred             cchH
Confidence            8874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.30  E-value=2.1e-11  Score=108.21  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .+.++.+|||+|||+|..+..+++..+  ++|+|+|+|+.+++.++++++..|+.++++++++|+..++.  .+..||.+
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~v  118 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--QNEELDLI  118 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--CTTCEEEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--CCCCEEEE
Confidence            567889999999999999999999864  49999999999999999999999998779999999987663  23455655


Q ss_pred             cccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCC
Q 021397          187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ  253 (313)
Q Consensus       187 s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~  253 (313)
                      .|.+++.+. +.                  ...+....+++           +|||+++.+++++..
T Consensus       119 ~~~~~l~~~-~~------------------~~~l~~~~~~L-----------~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          119 WSEGAIYNI-GF------------------ERGMNEWSKYL-----------KKGGFIAVSEASWFT  155 (257)
T ss_dssp             EEESCSCCC-CH------------------HHHHHHHHTTE-----------EEEEEEEEEEEEESS
T ss_pred             EecChHhhc-CH------------------HHHHHHHHHHc-----------CCCcEEEEEEeeccC
Confidence            777766443 11                  11223334444           559999999876333

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.30  E-value=5.8e-12  Score=111.61  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ..++...++++..++...++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            33455666666666666678899999999999999999998766899999999999999999999999976899999998


Q ss_pred             CC
Q 021397          172 TT  173 (313)
Q Consensus       172 ~~  173 (313)
                      ..
T Consensus       132 ~~  133 (237)
T 3c3y_A          132 ML  133 (237)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.30  E-value=2.1e-11  Score=114.32  Aligned_cols=79  Identities=20%  Similarity=0.231  Sum_probs=68.1

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +..-+..+..++.++++.+|||+|||+|..+..++...++...|+|+|+++.+++.+++|+++.|+. +++++++|+..+
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~  266 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL  266 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence            3334455666778889999999999999999999998744578999999999999999999999997 899999998764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.30  E-value=4.4e-12  Score=111.51  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ..|...+|...+.++..++.+.++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.+++++++.|+.+++.++
T Consensus        32 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  110 (233)
T 2gpy_A           32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELL  110 (233)
T ss_dssp             HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3466678888888888888888899999999999999999999875 479999999999999999999999987679999


Q ss_pred             ecCCCCC
Q 021397          168 VADGTTF  174 (313)
Q Consensus       168 ~~D~~~~  174 (313)
                      .+|+..+
T Consensus       111 ~~d~~~~  117 (233)
T 2gpy_A          111 FGDALQL  117 (233)
T ss_dssp             CSCGGGS
T ss_pred             ECCHHHH
Confidence            9998653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.30  E-value=2.4e-11  Score=105.26  Aligned_cols=119  Identities=14%  Similarity=0.195  Sum_probs=90.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..+...+.+.++.+|||+|||+|..+..+++..+....|+++|+|+.+++.+++++...++. +++++.+|+..++.  .
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL--P  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS--C
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC--C
Confidence            34556677889999999999999999999998755579999999999999999999999986 79999999987653  2


Q ss_pred             ccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +..||.+.+.+++.+.++.                  ...+....+++           +|||.++.+++.
T Consensus       104 ~~~fD~v~~~~~l~~~~~~------------------~~~l~~~~~~L-----------kpgG~l~i~~~~  145 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEP------------------LKFLEELKRVA-----------KPFAYLAIIDWK  145 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSH------------------HHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             CCCeeEEEeehhhhhcCCH------------------HHHHHHHHHHh-----------CCCeEEEEEEec
Confidence            3445555677666544331                  12223334444           559999998876

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.30  E-value=8e-13  Score=117.73  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=73.2

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      .+.++...++++..++...++.+|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+.++|+++.+|
T Consensus        41 ~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd  120 (242)
T 3r3h_A           41 NMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP  120 (242)
T ss_dssp             GTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred             CCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            35566777888877777778899999999999999999998876689999999999999999999999997789999999


Q ss_pred             CCC
Q 021397          171 GTT  173 (313)
Q Consensus       171 ~~~  173 (313)
                      +..
T Consensus       121 a~~  123 (242)
T 3r3h_A          121 ALD  123 (242)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.29  E-value=9.8e-12  Score=113.67  Aligned_cols=70  Identities=13%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++++++|++|||+|||||+.|..++.... +++|+|+|+|+.|++.+++++++.|+ ++++++++|+..++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC
Confidence            467899999999999999998765544433 47999999999999999999999999 68999999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.29  E-value=4.8e-12  Score=110.36  Aligned_cols=82  Identities=13%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ..++...+.++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            34555666777666666788999999999999999999987656899999999999999999999999977799999998


Q ss_pred             CC
Q 021397          172 TT  173 (313)
Q Consensus       172 ~~  173 (313)
                      ..
T Consensus       126 ~~  127 (225)
T 3tr6_A          126 KD  127 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.29  E-value=2.9e-11  Score=108.29  Aligned_cols=115  Identities=14%  Similarity=0.182  Sum_probs=87.0

Q ss_pred             HHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          102 AVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       102 ~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      +...+. +.++.+|||+|||+|..+..+++.  ..+.|+|+|+|+.+++.++++++..|+.++++++.+|+..++.  .+
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~  112 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--RN  112 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--CT
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--CC
Confidence            344444 678999999999999999999987  3469999999999999999999999997789999999987663  23


Q ss_pred             cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..||.+.|.+++.+. +.                  ...+....+++           +|||+++.++.+
T Consensus       113 ~~fD~i~~~~~~~~~-~~------------------~~~l~~~~~~L-----------kpgG~l~~~~~~  152 (267)
T 3kkz_A          113 EELDLIWSEGAIYNI-GF------------------ERGLNEWRKYL-----------KKGGYLAVSECS  152 (267)
T ss_dssp             TCEEEEEESSCGGGT-CH------------------HHHHHHHGGGE-----------EEEEEEEEEEEE
T ss_pred             CCEEEEEEcCCceec-CH------------------HHHHHHHHHHc-----------CCCCEEEEEEee
Confidence            455555777766443 11                  11223334444           559999999987

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.29  E-value=3.7e-11  Score=107.64  Aligned_cols=119  Identities=18%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      ...+...+.+.++.+|||+|||+|..+..+++..  ...|+++|+|+.+++.++++++..|+.+++.++.+|+..+++  
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  125 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--  125 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--
Confidence            3455667788899999999999999999999875  369999999999999999999999987789999999987653  


Q ss_pred             cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .+..||.+.+.+++.+.++.                  ...+....+++           +|||+++.++..
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~------------------~~~l~~~~~~L-----------~pgG~l~i~~~~  168 (273)
T 3bus_A          126 EDASFDAVWALESLHHMPDR------------------GRALREMARVL-----------RPGGTVAIADFV  168 (273)
T ss_dssp             CTTCEEEEEEESCTTTSSCH------------------HHHHHHHHTTE-----------EEEEEEEEEEEE
T ss_pred             CCCCccEEEEechhhhCCCH------------------HHHHHHHHHHc-----------CCCeEEEEEEee
Confidence            23455555777777655442                  12223334444           559999988865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.29  E-value=4.2e-11  Score=103.21  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ..|.+..+......+...++++++.+|||+|||+|..+..+++.   .++|+++|+|+.+++.++++++++++. +++++
T Consensus        55 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~  130 (210)
T 3lbf_A           55 GQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTR  130 (210)
T ss_dssp             TTSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             CCCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEE
Confidence            34566667777777888889999999999999999999999987   379999999999999999999999986 79999


Q ss_pred             ecCCCCCCccccccccCcccccccccc
Q 021397          168 VADGTTFSLAPLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       168 ~~D~~~~d~v~~D~~l~~~s~sg~l~~  194 (313)
                      .+|+.....  .+..||.+.+.+.+.+
T Consensus       131 ~~d~~~~~~--~~~~~D~i~~~~~~~~  155 (210)
T 3lbf_A          131 HGDGWQGWQ--ARAPFDAIIVTAAPPE  155 (210)
T ss_dssp             ESCGGGCCG--GGCCEEEEEESSBCSS
T ss_pred             ECCcccCCc--cCCCccEEEEccchhh
Confidence            999866432  1233444455554433

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.28  E-value=1.1e-11  Score=112.56  Aligned_cols=75  Identities=13%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .....+...  +++|++|||+|||+|+++..+++...  .+|+|+|+|+.+++.+++|++.+++.++++++++|+..+.
T Consensus       114 ~~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~  188 (278)
T 2frn_A          114 KERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             HHHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             HHHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc
Confidence            555555555  46799999999999999999998743  2799999999999999999999999767999999997654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.28  E-value=3.7e-12  Score=111.93  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             ecHHHHHHHHh---cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecC
Q 021397           95 IDAASGAAVSA---LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-DRCRLFVAD  170 (313)
Q Consensus        95 Qd~ss~~~~~~---l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~~v~~~~~D  170 (313)
                      +....+++..+   ..++++.+|||+|||+|..|..+++.+++.++|+++|+++.+++.+++++++.|+. ++++++.+|
T Consensus        38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd  117 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR  117 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred             CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence            34444444333   34455569999999999999999998876789999999999999999999999987 689999999


Q ss_pred             CCC
Q 021397          171 GTT  173 (313)
Q Consensus       171 ~~~  173 (313)
                      +..
T Consensus       118 a~~  120 (221)
T 3dr5_A          118 PLD  120 (221)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.26  E-value=6.2e-11  Score=107.69  Aligned_cols=98  Identities=14%  Similarity=0.036  Sum_probs=78.6

Q ss_pred             cHHHHHHHHhc----CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           96 DAASGAAVSAL----NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        96 d~ss~~~~~~l----~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ......+...+    .+.++.+|||+|||+|..+..+++..+  ..|+++|+|+.+++.++++++..|+.++++++.+|+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  141 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc
Confidence            33344455566    788999999999999999999999864  589999999999999999999999877899999999


Q ss_pred             CCCCccccccccCccccccccccccc
Q 021397          172 TTFSLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       172 ~~~d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      ..+++  .|..||.+.+.+++.+.++
T Consensus       142 ~~~~~--~~~~fD~v~~~~~l~~~~~  165 (297)
T 2o57_A          142 LEIPC--EDNSYDFIWSQDAFLHSPD  165 (297)
T ss_dssp             TSCSS--CTTCEEEEEEESCGGGCSC
T ss_pred             ccCCC--CCCCEeEEEecchhhhcCC
Confidence            87653  2345565677777766554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.24  E-value=1.6e-11  Score=109.58  Aligned_cols=83  Identities=8%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      ...++....+++..++...++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|
T Consensus        60 ~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd  139 (247)
T 1sui_A           60 IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP  139 (247)
T ss_dssp             GGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             CCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence            44556677777777666677889999999999999999999875689999999999999999999999987689999999


Q ss_pred             CCC
Q 021397          171 GTT  173 (313)
Q Consensus       171 ~~~  173 (313)
                      +..
T Consensus       140 a~~  142 (247)
T 1sui_A          140 ALP  142 (247)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.24  E-value=3.5e-11  Score=106.97  Aligned_cols=85  Identities=18%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      .+...+....+..+...+++.+|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.+|+.++++++.
T Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~  151 (255)
T 3mb5_A           72 RGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL  151 (255)
T ss_dssp             CCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC
T ss_pred             cccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            33333344555677778899999999999999999999999997766899999999999999999999999876699999


Q ss_pred             cCCCC
Q 021397          169 ADGTT  173 (313)
Q Consensus       169 ~D~~~  173 (313)
                      +|+..
T Consensus       152 ~d~~~  156 (255)
T 3mb5_A          152 KDIYE  156 (255)
T ss_dssp             SCGGG
T ss_pred             Cchhh
Confidence            99864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.23  E-value=6.1e-11  Score=101.99  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      ...+...+.++++ +|||+|||+|..+..+++. + ...|+++|+|+.+++.++++++..++.++++++++|+..++.  
T Consensus        33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  107 (219)
T 3dlc_A           33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--  107 (219)
T ss_dssp             HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--
T ss_pred             HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--
Confidence            3445556666777 9999999999999999987 3 369999999999999999999999987789999999987663  


Q ss_pred             cccccCcccccccccccc
Q 021397          179 LRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p  196 (313)
                      .+..||.+.+.+++.+.+
T Consensus       108 ~~~~~D~v~~~~~l~~~~  125 (219)
T 3dlc_A          108 EDNYADLIVSRGSVFFWE  125 (219)
T ss_dssp             CTTCEEEEEEESCGGGCS
T ss_pred             CcccccEEEECchHhhcc
Confidence            234455557777665543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.23  E-value=5e-11  Score=107.70  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             CCeEEEecHHHHHHHHhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           89 QGKIYGIDAASGAAVSALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      .|.+..+.....++..+++.  .++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.+++|++++++. ++++
T Consensus        86 ~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~  163 (276)
T 2b3t_A           86 PATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHI  163 (276)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEE
T ss_pred             CCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEE
Confidence            34444455555554444332  5788999999999999999998765 479999999999999999999999986 7999


Q ss_pred             EecCCCC------CCccccc
Q 021397          167 FVADGTT------FSLAPLR  180 (313)
Q Consensus       167 ~~~D~~~------~d~v~~D  180 (313)
                      +++|+..      ||.+..+
T Consensus       164 ~~~d~~~~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          164 LQSDWFSALAGQQFAMIVSN  183 (276)
T ss_dssp             ECCSTTGGGTTCCEEEEEEC
T ss_pred             EEcchhhhcccCCccEEEEC
Confidence            9999853      4555555

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.23  E-value=9.3e-11  Score=105.99  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+.+.++.+|||+|||+|..+..+++..+  ..|+++|+|+.+++.+++++++.|+.++++++.+|+..++     
T Consensus        55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----  127 (287)
T 1kpg_A           55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----  127 (287)
T ss_dssp             HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----
T ss_pred             HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----
Confidence            345566788999999999999999999997764  4999999999999999999998888778999999997765     


Q ss_pred             cccCcccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKD  196 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p  196 (313)
                      ..||.+.+.+++.+.+
T Consensus       128 ~~fD~v~~~~~l~~~~  143 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFG  143 (287)
T ss_dssp             CCCSEEEEESCGGGTC
T ss_pred             CCeeEEEEeCchhhcC
Confidence            2344446677766543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.21  E-value=2.6e-11  Score=106.83  Aligned_cols=84  Identities=11%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      +.-.++.....++..++...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++++.++.++++++.+
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG  129 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            44455667777777777777889999999999999999998543 58999999999999999999999998778999999


Q ss_pred             CCCCC
Q 021397          170 DGTTF  174 (313)
Q Consensus       170 D~~~~  174 (313)
                      |+..+
T Consensus       130 d~~~~  134 (232)
T 3ntv_A          130 NALEQ  134 (232)
T ss_dssp             CGGGC
T ss_pred             CHHHH
Confidence            98654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.21  E-value=1.2e-10  Score=107.09  Aligned_cols=117  Identities=12%  Similarity=0.173  Sum_probs=87.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..+...+.+.++.+|||+|||+|..+..+++..+  ..|+++|+|+.+++.++++++..|+.++++++.+|+..++    
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  153 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----  153 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----
Confidence            3455567788999999999999999999998873  5999999999999999999999888767999999987765    


Q ss_pred             ccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                       ..||.+.+.+++.+.++.  .              ....+....+++           +|||+++..+..
T Consensus       154 -~~fD~v~~~~~l~~~~~~--~--------------~~~~l~~~~~~L-----------kpgG~l~~~~~~  196 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGHE--N--------------YDDFFKRCFNIM-----------PADGRMTVQSSV  196 (318)
T ss_dssp             -CCCSEEEEESCGGGTCGG--G--------------HHHHHHHHHHHS-----------CTTCEEEEEEEE
T ss_pred             -CCcCEEEEeChHHhcCHH--H--------------HHHHHHHHHHhc-----------CCCcEEEEEEec
Confidence             234444666666554320  0              111223334444           559999998887

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.20  E-value=1.8e-10  Score=106.27  Aligned_cols=97  Identities=12%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .|......+...+++++|++|||+|||+|..+..+++..+..++|+++|+|+.+++.++++++..|+. +++++.+|+..
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~  137 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYY  137 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhh
Confidence            34455666777888999999999999999999999998764578999999999999999999999986 59999999876


Q ss_pred             CCccccccccCccccccccc
Q 021397          174 FSLAPLRLLLDPGSCNSVLQ  193 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~  193 (313)
                      ...  .+..||.+.+.+++.
T Consensus       138 ~~~--~~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A          138 GVP--EFSPYDVIFVTVGVD  155 (317)
T ss_dssp             CCG--GGCCEEEEEECSBBS
T ss_pred             ccc--cCCCeEEEEEcCCHH
Confidence            322  122344445555443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.20  E-value=2.7e-12  Score=113.28  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             CeEEEecH--HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           90 GKIYGIDA--ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        90 G~~~~Qd~--ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      |++..+..  +..++..+....++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++++.+++.++++++
T Consensus        56 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~  132 (241)
T 3gdh_A           56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFI  132 (241)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             ceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE
Confidence            44444444  4444445555558999999999999999999985   279999999999999999999999985589999


Q ss_pred             ecCCCC------CCccccc
Q 021397          168 VADGTT------FSLAPLR  180 (313)
Q Consensus       168 ~~D~~~------~d~v~~D  180 (313)
                      ++|+..      ||.+.+|
T Consensus       133 ~~d~~~~~~~~~~D~v~~~  151 (241)
T 3gdh_A          133 CGDFLLLASFLKADVVFLS  151 (241)
T ss_dssp             ESCHHHHGGGCCCSEEEEC
T ss_pred             ECChHHhcccCCCCEEEEC
Confidence            999853      5555555

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.19  E-value=6e-11  Score=107.52  Aligned_cols=97  Identities=20%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +..+.+...+..+.++.+|||+|||+|..+..+++..++...|+|+|+|+.+++.+++++...+.  +++++++|+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~   85 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC
Confidence            34444454556778899999999999999999998876557999999999999999999988776  7999999998765


Q ss_pred             ccccccccCccccccccccccc
Q 021397          176 LAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       176 ~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      .   +..||.+.+..++.+.++
T Consensus        86 ~---~~~fD~v~~~~~l~~~~~  104 (284)
T 3gu3_A           86 L---NDKYDIAICHAFLLHMTT  104 (284)
T ss_dssp             C---SSCEEEEEEESCGGGCSS
T ss_pred             c---CCCeeEEEECChhhcCCC
Confidence            4   334555577776655443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.18  E-value=1.5e-11  Score=116.93  Aligned_cols=84  Identities=11%  Similarity=0.015  Sum_probs=66.8

Q ss_pred             cCCeE-EEecHHHHHHH---HhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           88 KQGKI-YGIDAASGAAV---SALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        88 ~~G~~-~~Qd~ss~~~~---~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ..++| ..|.....+..   ..+..  ++|.+|||+|||+|++++.++..+++.+.|+++|+++.+++.+++|++.+|+.
T Consensus        24 ~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~  103 (392)
T 3axs_A           24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP  103 (392)
T ss_dssp             CCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            44555 35666655542   22222  57899999999999999999997654468999999999999999999999997


Q ss_pred             Cc-EEEEecCC
Q 021397          162 DR-CRLFVADG  171 (313)
Q Consensus       162 ~~-v~~~~~D~  171 (313)
                      ++ ++++++|+
T Consensus       104 ~~~v~v~~~Da  114 (392)
T 3axs_A          104 EDRYEIHGMEA  114 (392)
T ss_dssp             GGGEEEECSCH
T ss_pred             CceEEEEeCCH
Confidence            55 99999997

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.18  E-value=1.3e-10  Score=104.11  Aligned_cols=103  Identities=22%  Similarity=0.224  Sum_probs=78.2

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHH------HHHHHHHHHHHcCCCCcEEEEe
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH------RLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~------~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      |......+...+.++++.+|||+|||+|..+..+++..+..++|+++|+|+.      +++.++++++..++.++++++.
T Consensus        28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~  107 (275)
T 3bkx_A           28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF  107 (275)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence            4444455666778899999999999999999999998755579999999997      9999999999888766899999


Q ss_pred             cC-CCCCCccccccccCccccccccccccc
Q 021397          169 AD-GTTFSLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       169 ~D-~~~~d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      +| .........+..||.+.+.+++.+.++
T Consensus       108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~  137 (275)
T 3bkx_A          108 NTNLSDDLGPIADQHFDRVVLAHSLWYFAS  137 (275)
T ss_dssp             SCCTTTCCGGGTTCCCSEEEEESCGGGSSC
T ss_pred             CChhhhccCCCCCCCEEEEEEccchhhCCC
Confidence            98 222111112345666677777765544

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.18  E-value=3.7e-10  Score=97.59  Aligned_cols=84  Identities=20%  Similarity=0.326  Sum_probs=71.1

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ..|....+......+...+.+.++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++...++. +++++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~  133 (215)
T 2yxe_A           55 GYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVI  133 (215)
T ss_dssp             ETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEE
T ss_pred             CCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEE
Confidence            44555555555566777788899999999999999999999998855579999999999999999999999986 69999


Q ss_pred             ecCCC
Q 021397          168 VADGT  172 (313)
Q Consensus       168 ~~D~~  172 (313)
                      .+|+.
T Consensus       134 ~~d~~  138 (215)
T 2yxe_A          134 VGDGT  138 (215)
T ss_dssp             ESCGG
T ss_pred             ECCcc
Confidence            99974

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.17  E-value=2.8e-11  Score=114.72  Aligned_cols=91  Identities=16%  Similarity=0.063  Sum_probs=68.7

Q ss_pred             CCeEE--EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--------
Q 021397           89 QGKIY--GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--------  158 (313)
Q Consensus        89 ~G~~~--~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------  158 (313)
                      .+.|+  .|.....+....+...+|.+|||+|||+|.+++.++...++ ..|+++|+++.+++.+++|++++        
T Consensus        24 ~~~F~np~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~  102 (378)
T 2dul_A           24 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRES  102 (378)
T ss_dssp             -CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEEC
T ss_pred             CCceeCCchHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccc
Confidence            34444  45555544333322237899999999999999999998754 57999999999999999999999        


Q ss_pred             -------CCCCcEEEEecCCC--------CCCcccccc
Q 021397          159 -------ALGDRCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       159 -------g~~~~v~~~~~D~~--------~~d~v~~D~  181 (313)
                             |+. +++++++|+.        .||.+.+||
T Consensus       103 ~~~~~~~gl~-~i~v~~~Da~~~~~~~~~~fD~I~lDP  139 (378)
T 2dul_A          103 KGRAILKGEK-TIVINHDDANRLMAERHRYFHFIDLDP  139 (378)
T ss_dssp             SSEEEEESSS-EEEEEESCHHHHHHHSTTCEEEEEECC
T ss_pred             cccccccCCC-ceEEEcCcHHHHHHhccCCCCEEEeCC
Confidence                   885 5999999984        355555553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.17  E-value=4.4e-11  Score=105.49  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ++.....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+.++++++.+|+.
T Consensus        56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3445555655555556788999999999999999999876568999999999999999999999998767999999974

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.17  E-value=2.7e-10  Score=96.66  Aligned_cols=88  Identities=16%  Similarity=0.076  Sum_probs=71.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+...++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.++++++..++. +++++.+|+..++.   +
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~   95 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF---D   95 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC---C
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC---C
Confidence            4556677778899999999999999999986   368999999999999999999998885 69999999987653   4


Q ss_pred             cccCccccccccccc
Q 021397          181 LLLDPGSCNSVLQEK  195 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~  195 (313)
                      ..||.+.+.+++.+.
T Consensus        96 ~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           96 RQYDFILSTVVLMFL  110 (199)
T ss_dssp             CCEEEEEEESCGGGS
T ss_pred             CCceEEEEcchhhhC
Confidence            445555666666543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.17  E-value=5.4e-11  Score=103.90  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ......++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++.+|+.
T Consensus        54 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  131 (229)
T 2avd_A           54 TCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  131 (229)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHH
Confidence            344445555555567789999999999999999999876568999999999999999999999998768999999974

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.17  E-value=1e-10  Score=99.35  Aligned_cols=63  Identities=24%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++|++.+++ ++++++++|+..+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  105 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAV  105 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHH
Confidence            57899999999999999988774  346899999999999999999999998 4799999997543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.17  E-value=3.5e-10  Score=98.76  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=56.9

Q ss_pred             cCCCCCCEEEEECCC-cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          106 LNISAGDHVLDLCAA-PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       106 l~~~~g~~VLDlcag-pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..++++.+|||+||| +|..+..+++..  ...|+|+|+|+.+++.++++++.+++  +++++++|+.
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  114 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGG  114 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSC
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCch
Confidence            346789999999999 999999999986  37999999999999999999999998  6999999964

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.16  E-value=2.1e-11  Score=105.42  Aligned_cols=80  Identities=20%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++...+.++..++...++.+|||+|||+|..+..+++.++..++|+++|+|+.+++.+++++++.++.++++++.+|+..
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            44555555555555557789999999999999999998764589999999999999999999999987679999999854

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.16  E-value=2e-10  Score=99.93  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.+++|++|||+|||+|..+.++++..+ .+.|+|+|+|+.+++.+.+.+++.   .++.++.+|+...
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~  117 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKP  117 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCG
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCc
Confidence            4567899999999999999999999887 589999999999998888777654   2688999998764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.16  E-value=9.1e-11  Score=106.58  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.++..  +++|++|||+|||+|++++.+|.. + ..+|+|+|+|+.+++.+++|++.+|+.++++++++|+..|.
T Consensus       117 ~ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~  188 (278)
T 3k6r_A          117 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             HHHHHh--cCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc
Confidence            334444  478999999999999999999986 3 36899999999999999999999999888999999998754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.16  E-value=3.4e-10  Score=95.27  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRLFVADGTT  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-~v~~~~~D~~~  173 (313)
                      ..+..+...+.++++.+|||+|||+|..+..+++.   ...|+++|+++.+++.++++++..++.+ +++++.+|+..
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence            56677778888889999999999999999999886   3699999999999999999999998853 39999999865

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.16  E-value=2.8e-10  Score=103.63  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             CeEEEecHHHHHHHHh---cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           90 GKIYGIDAASGAAVSA---LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~---l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      |.+..+.....++-.+   +...++.+|||+|||+|..+..+++. + ..+|+|+|+|+.+++.+++|++++|+.+++++
T Consensus       100 ~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~  177 (284)
T 1nv8_A          100 GVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFV  177 (284)
T ss_dssp             TSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             CceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence            3344444444443333   22346789999999999999999998 4 57999999999999999999999999767999


Q ss_pred             EecCCCC-----C---Cccccc
Q 021397          167 FVADGTT-----F---SLAPLR  180 (313)
Q Consensus       167 ~~~D~~~-----~---d~v~~D  180 (313)
                      +++|+..     |   |.+..|
T Consensus       178 ~~~D~~~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          178 RKGEFLEPFKEKFASIEMILSN  199 (284)
T ss_dssp             EESSTTGGGGGGTTTCCEEEEC
T ss_pred             EECcchhhcccccCCCCEEEEc
Confidence            9999853     6   777677

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.15  E-value=1e-10  Score=101.14  Aligned_cols=94  Identities=18%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |..-..++...+...++.+|||+|||+|..+..+++..   ..|+|+|+|+.+++.+++++...+   +++++++|+..+
T Consensus        36 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~  109 (216)
T 3ofk_A           36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQF  109 (216)
T ss_dssp             HHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTC
T ss_pred             HHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhC
Confidence            33444556667777888999999999999999998762   589999999999999998876543   699999999887


Q ss_pred             CccccccccCccccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      +   .+..||.+.|.+++.+.++
T Consensus       110 ~---~~~~fD~v~~~~~l~~~~~  129 (216)
T 3ofk_A          110 S---TAELFDLIVVAEVLYYLED  129 (216)
T ss_dssp             C---CSCCEEEEEEESCGGGSSS
T ss_pred             C---CCCCccEEEEccHHHhCCC
Confidence            6   2455666677777765553

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.15  E-value=2e-10  Score=99.51  Aligned_cols=93  Identities=26%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC----cEEEEecCCCCCCc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD----RCRLFVADGTTFSL  176 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~----~v~~~~~D~~~~d~  176 (313)
                      .+...+...++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.++++++..++..    +++++.+|+...+.
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (217)
T 3jwh_A           20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK   98 (217)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence            445555667889999999999999999998643 3699999999999999999998877753    69999999865442


Q ss_pred             cccccccCcccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~p  196 (313)
                        .+..||.+.|..++.+-+
T Consensus        99 --~~~~fD~v~~~~~l~~~~  116 (217)
T 3jwh_A           99 --RFHGYDAATVIEVIEHLD  116 (217)
T ss_dssp             --GGCSCSEEEEESCGGGCC
T ss_pred             --cCCCcCEEeeHHHHHcCC
Confidence              123455557777665443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.15  E-value=1.1e-10  Score=100.92  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc------------CCCCcEEEEecCCC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY------------ALGDRCRLFVADGT  172 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------------g~~~~v~~~~~D~~  172 (313)
                      .+.+.++.+|||+|||+|..+..+++. +  ..|+|+|+|+.|++.++++.+..            .. .+++++++|+.
T Consensus        17 ~l~~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~   92 (203)
T 1pjz_A           17 SLNVVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA-PGIEIWCGDFF   92 (203)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC-SSSEEEEECCS
T ss_pred             hcccCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccC-CccEEEECccc
Confidence            456678999999999999999999986 2  58999999999999999875421            12 37999999998


Q ss_pred             CCCccccc-cccCcccccccccc
Q 021397          173 TFSLAPLR-LLLDPGSCNSVLQE  194 (313)
Q Consensus       173 ~~d~v~~D-~~l~~~s~sg~l~~  194 (313)
                      .++.  .| ..||.+.+.+++..
T Consensus        93 ~l~~--~~~~~fD~v~~~~~l~~  113 (203)
T 1pjz_A           93 ALTA--RDIGHCAAFYDRAAMIA  113 (203)
T ss_dssp             SSTH--HHHHSEEEEEEESCGGG
T ss_pred             cCCc--ccCCCEEEEEECcchhh
Confidence            8764  12 34555566565543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.15  E-value=2e-11  Score=104.82  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=42.6

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC-----------CCCCcc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-----------TTFSLA  177 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~-----------~~~d~v  177 (313)
                      .++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.++++++..+.  +++++++|+           ..||.+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i  105 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAERGRPWHAI  105 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhccCcccEE
Confidence            6789999999999999999999854 46999999999999999999998887  688888886           346666


Q ss_pred             cccc
Q 021397          178 PLRL  181 (313)
Q Consensus       178 ~~D~  181 (313)
                      ..||
T Consensus       106 ~~np  109 (215)
T 4dzr_A          106 VSNP  109 (215)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            6663

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.15  E-value=1.4e-10  Score=100.92  Aligned_cols=65  Identities=8%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++.+|||+|||+|..+..+|+..+ ...|+|+|+|+.+++.+++++++.++. ++.++++|+..++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~  101 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLT  101 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHH
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHH
Confidence            4678999999999999999999864 479999999999999999999999985 7999999997643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.14  E-value=8.4e-11  Score=101.36  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-DRCRLFVADGTTF  174 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~~v~~~~~D~~~~  174 (313)
                      ++.+|||+|||+|..+..++..  ....|+|+|+|+.+++.+++|++..++. ++++++++|+..+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  116 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH
Confidence            6889999999999999987765  2368999999999999999999999983 4799999997543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.14  E-value=7.3e-11  Score=108.06  Aligned_cols=115  Identities=15%  Similarity=0.033  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .++++.+|||+|||+|..+..++........|+++|+|+.+++.+++++...|+.++++++++|+..++.   +..||.+
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v  191 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT---REGYDLL  191 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC---CSCEEEE
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc---cCCeEEE
Confidence            4678999999999999999998633344579999999999999999999999987679999999987653   2344555


Q ss_pred             cccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       187 s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .+.+++.+.++.               .....++....+.+           +|||+++.++..
T Consensus       192 ~~~~~~~~~~~~---------------~~~~~~l~~~~~~L-----------kpgG~l~i~~~~  229 (305)
T 3ocj_A          192 TSNGLNIYEPDD---------------ARVTELYRRFWQAL-----------KPGGALVTSFLT  229 (305)
T ss_dssp             ECCSSGGGCCCH---------------HHHHHHHHHHHHHE-----------EEEEEEEEECCC
T ss_pred             EECChhhhcCCH---------------HHHHHHHHHHHHhc-----------CCCeEEEEEecC
Confidence            666666554442               01112233444455           559999998865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.14  E-value=4.1e-11  Score=106.07  Aligned_cols=61  Identities=8%  Similarity=-0.047  Sum_probs=53.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..+|.+|||+|||+|..+..+++..+  ..|+++|+|+.+++.++++.+..+.  ++.++.+|+.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~  118 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWE  118 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHH
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHH
Confidence            46799999999999999999987532  5899999999999999999888775  6889998874

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.14  E-value=5.6e-10  Score=96.73  Aligned_cols=65  Identities=12%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.+++++++.++. ++.++++|+..++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~  104 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLT  104 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGG
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHHH
Confidence            4688999999999999999999865 479999999999999999999999984 7999999997654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.14  E-value=8.4e-11  Score=105.59  Aligned_cols=77  Identities=19%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH---cCCCCcEEEEecCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK---YALGDRCRLFVADGTT  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~---~g~~~~v~~~~~D~~~  173 (313)
                      ..+.+++.++.+.++.+|||+|||+|..++.+++..+ ...|+|+|+++.+++.+++|++.   +++.++++++++|+..
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~  101 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL  101 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence            3467788888888899999999999999999999864 37999999999999999999988   8886679999999865


Q ss_pred             C
Q 021397          174 F  174 (313)
Q Consensus       174 ~  174 (313)
                      +
T Consensus       102 ~  102 (260)
T 2ozv_A          102 R  102 (260)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.13  E-value=1.5e-10  Score=103.48  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.++++++++|+. +++++++|+..+.
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~  143 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLA  143 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHT
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhh
Confidence            46789999999999999999998765 479999999999999999999999996 5999999987654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.13  E-value=1.5e-10  Score=102.24  Aligned_cols=67  Identities=19%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .+.++.+|||+|||+|..+..++...+ .++|+|+|+|+.+++.+++++++.|+. +++++++|+..++
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  133 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFG  133 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHT
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhc
Confidence            445789999999999999999998644 479999999999999999999999986 6999999987654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.13  E-value=4.1e-10  Score=102.56  Aligned_cols=87  Identities=8%  Similarity=0.093  Sum_probs=68.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecCCCCCCccc----cccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVADGTTFSLAP----LRLL  182 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D~~~~d~v~----~D~~  182 (313)
                      ..++.+|||+|||+|..+..+++.++...+|+|+|+|+.+++.++++++.. +...+++++++|+..++...    .+..
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            357899999999999999999987644589999999999999999999887 44458999999998876421    0134


Q ss_pred             cCcccccccccc
Q 021397          183 LDPGSCNSVLQE  194 (313)
Q Consensus       183 l~~~s~sg~l~~  194 (313)
                      ||.+.|..+++.
T Consensus       114 fD~V~~~~~l~~  125 (299)
T 3g5t_A          114 IDMITAVECAHW  125 (299)
T ss_dssp             EEEEEEESCGGG
T ss_pred             eeEEeHhhHHHH
Confidence            555566666543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.13  E-value=3e-10  Score=102.75  Aligned_cols=82  Identities=11%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD  170 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D  170 (313)
                      .|..|.........+..+.+|++|||+|||+|.++..+++..+ .++|+|+|+++.+++.+++|++.+++. ++.++++|
T Consensus       100 ~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d  177 (272)
T 3a27_A          100 IMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILAD  177 (272)
T ss_dssp             SCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESC
T ss_pred             EEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECC
Confidence            3444544444444455578899999999999999999999864 469999999999999999999999986 68999999


Q ss_pred             CCCC
Q 021397          171 GTTF  174 (313)
Q Consensus       171 ~~~~  174 (313)
                      +..+
T Consensus       178 ~~~~  181 (272)
T 3a27_A          178 NRDV  181 (272)
T ss_dssp             GGGC
T ss_pred             hHHc
Confidence            9765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.12  E-value=1.1e-10  Score=102.20  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .++..|||+|||+|..+..+|+..+ ...|+|+|+|+.+++.+++++++.|+. |+.++++|+..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~   95 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVE   95 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHH
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHH
Confidence            3678999999999999999999865 478999999999999999999999986 69999999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.12  E-value=2.8e-10  Score=98.60  Aligned_cols=94  Identities=24%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC----cEEEEecCCCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD----RCRLFVADGTTFS  175 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~----~v~~~~~D~~~~d  175 (313)
                      ..+...+...++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.+++++...++.+    +++++.+|+...+
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence            3444555567789999999999999999998643 3699999999999999999998777653    7999999986544


Q ss_pred             ccccccccCcccccccccccc
Q 021397          176 LAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       176 ~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      .  .+..||.+.|..++.+.+
T Consensus        98 ~--~~~~fD~V~~~~~l~~~~  116 (219)
T 3jwg_A           98 K--RFSGYDAATVIEVIEHLD  116 (219)
T ss_dssp             G--GGTTCSEEEEESCGGGCC
T ss_pred             c--ccCCCCEEEEHHHHHhCC
Confidence            2  234456567777765544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.12  E-value=4.8e-10  Score=101.15  Aligned_cols=76  Identities=22%  Similarity=0.297  Sum_probs=67.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +..++..+++.++.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.++++++++++.++++++.+|+..+
T Consensus       101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A          101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            3456677889999999999999999999999987656899999999999999999999999855899999998654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.11  E-value=1.6e-10  Score=101.94  Aligned_cols=80  Identities=11%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++.....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+.++++++.+|+..
T Consensus        44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34455556666666678899999999999999999998865579999999999999999999999987669999999754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.11  E-value=3.9e-10  Score=98.61  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=82.9

Q ss_pred             HHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          101 AAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       101 ~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      .+...+. ..++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.+++++...+   +++++++|+..++..  
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~--  107 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE--  107 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC--
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC--
Confidence            3444444 56789999999999999999999864 4799999999999999998875554   699999999876642  


Q ss_pred             ccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                       ..||.+.|..++.+.++.                ....++....+++           +|||.++.++..
T Consensus       108 -~~fD~v~~~~~l~~~~~~----------------~~~~~l~~~~~~L-----------kpgG~l~~~~~~  150 (234)
T 3dtn_A          108 -EKYDMVVSALSIHHLEDE----------------DKKELYKRSYSIL-----------KESGIFINADLV  150 (234)
T ss_dssp             -SCEEEEEEESCGGGSCHH----------------HHHHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             -CCceEEEEeCccccCCHH----------------HHHHHHHHHHHhc-----------CCCcEEEEEEec
Confidence             334444666666544331                0112233334444           559999998876

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.11  E-value=8.1e-10  Score=104.32  Aligned_cols=87  Identities=7%  Similarity=0.012  Sum_probs=71.7

Q ss_pred             cccccCCeEEEecHHHHHHHHh-cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           84 SMAYKQGKIYGIDAASGAAVSA-LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~-l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      ...|..++...|+..+.++... ....+|.+|||+| |+|..+..++.. +..++|+++|+|+.+++.+++|++++|+. 
T Consensus       145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-  221 (373)
T 2qm3_A          145 LHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-  221 (373)
T ss_dssp             CGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-
T ss_pred             chhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence            3456777888888877766443 2345789999999 999999999876 33479999999999999999999999986 


Q ss_pred             cEEEEecCCCC
Q 021397          163 RCRLFVADGTT  173 (313)
Q Consensus       163 ~v~~~~~D~~~  173 (313)
                      +++++.+|+..
T Consensus       222 ~v~~~~~D~~~  232 (373)
T 2qm3_A          222 DIEIFTFDLRK  232 (373)
T ss_dssp             CEEEECCCTTS
T ss_pred             CEEEEEChhhh
Confidence            79999999876

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.11  E-value=6.3e-10  Score=97.90  Aligned_cols=82  Identities=13%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             ccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        87 ~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      +..|....+......+...+.+.++.+|||+|||+|..+..+++..+  ++|+++|+++.+++.++++++..|+. ++++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~  144 (235)
T 1jg1_A           68 IPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHV  144 (235)
T ss_dssp             CSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEE
T ss_pred             cCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEE
Confidence            45666666776677777888899999999999999999999999875  68999999999999999999999986 5999


Q ss_pred             EecCC
Q 021397          167 FVADG  171 (313)
Q Consensus       167 ~~~D~  171 (313)
                      +.+|+
T Consensus       145 ~~~d~  149 (235)
T 1jg1_A          145 ILGDG  149 (235)
T ss_dssp             EESCG
T ss_pred             EECCc
Confidence            99997

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.11  E-value=4.6e-10  Score=99.45  Aligned_cols=93  Identities=19%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .|......+...+.+.++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++++     . .++.++.+|+..
T Consensus        17 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~   89 (259)
T 2p35_A           17 ERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLAT   89 (259)
T ss_dssp             GGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTT
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhh
Confidence            3555555666677788899999999999999999999875 36899999999999999877     2 368999999987


Q ss_pred             CCccccccccCcccccccccccc
Q 021397          174 FSLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       174 ~d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      ++   .+..||.+.+..++...+
T Consensus        90 ~~---~~~~fD~v~~~~~l~~~~  109 (259)
T 2p35_A           90 WK---PAQKADLLYANAVFQWVP  109 (259)
T ss_dssp             CC---CSSCEEEEEEESCGGGST
T ss_pred             cC---ccCCcCEEEEeCchhhCC
Confidence            65   244556556666665443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.11  E-value=6.5e-10  Score=99.73  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      .++.....+.++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.+++++...++. +++++.+|+..++.  .
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--~  102 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF--E  102 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS--C
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC--C
Confidence            3344445567899999999999999999999854 479999999999999999999999986 79999999987653  2


Q ss_pred             ccccCccccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~  197 (313)
                      +..||.+.+..++.+.++
T Consensus       103 ~~~fD~v~~~~~l~~~~~  120 (276)
T 3mgg_A          103 DSSFDHIFVCFVLEHLQS  120 (276)
T ss_dssp             TTCEEEEEEESCGGGCSC
T ss_pred             CCCeeEEEEechhhhcCC
Confidence            345555567766655544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.11  E-value=3.7e-10  Score=94.60  Aligned_cols=70  Identities=19%  Similarity=0.196  Sum_probs=59.7

Q ss_pred             HHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +...+. ..++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.++++++..++.++++++.+|+..
T Consensus        22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   92 (177)
T 2esr_A           22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER   92 (177)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred             HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence            334444 567899999999999999999886 3 369999999999999999999999886679999999854

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.10  E-value=2.8e-10  Score=101.04  Aligned_cols=89  Identities=12%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ..+...+.++++.+|||+|||+|..+..+++..  ...|+|+|+|+.+++.+++++...   .+++++.+|+..++.  .
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~--~  117 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF--P  117 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC--C
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC--C
Confidence            445556678899999999999999999999986  369999999999999999876544   379999999987653  2


Q ss_pred             ccccCccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEK  195 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~  195 (313)
                      +..||.+.+..++.+.
T Consensus       118 ~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          118 ENNFDLIYSRDAILAL  133 (266)
T ss_dssp             TTCEEEEEEESCGGGS
T ss_pred             CCcEEEEeHHHHHHhc
Confidence            3455555777666554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.09  E-value=8.8e-10  Score=96.23  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             ccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397           87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus        87 ~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      +..|....+......+...+.+.++.+|||+|||+|..+..+++..   ..|+++|+++.+++.+++++...+   ++++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~  120 (231)
T 1vbf_A           47 ILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKL  120 (231)
T ss_dssp             EETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEE
T ss_pred             eCCCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEE
Confidence            3456666666666677788888999999999999999999999873   689999999999999999987766   6999


Q ss_pred             EecCCCCCCccccccccCccccccccc
Q 021397          167 FVADGTTFSLAPLRLLLDPGSCNSVLQ  193 (313)
Q Consensus       167 ~~~D~~~~d~v~~D~~l~~~s~sg~l~  193 (313)
                      +.+|+....  ..+..||.+.+.+.+.
T Consensus       121 ~~~d~~~~~--~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A          121 ILGDGTLGY--EEEKPYDRVVVWATAP  145 (231)
T ss_dssp             EESCGGGCC--GGGCCEEEEEESSBBS
T ss_pred             EECCccccc--ccCCCccEEEECCcHH
Confidence            999986521  1123344445555443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.09  E-value=9.6e-10  Score=98.90  Aligned_cols=82  Identities=22%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-C-CCCcEEEEecCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-A-LGDRCRLFVADG  171 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g-~~~~v~~~~~D~  171 (313)
                      +....+..+...+++.++.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.++++++.. | +.++++++.+|+
T Consensus        83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~  162 (280)
T 1i9g_A           83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  162 (280)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence            34445556677888999999999999999999999998765689999999999999999999988 6 334799999998


Q ss_pred             CCCC
Q 021397          172 TTFS  175 (313)
Q Consensus       172 ~~~d  175 (313)
                      ...+
T Consensus       163 ~~~~  166 (280)
T 1i9g_A          163 ADSE  166 (280)
T ss_dssp             GGCC
T ss_pred             HhcC
Confidence            7653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.09  E-value=4.8e-10  Score=99.50  Aligned_cols=64  Identities=5%  Similarity=0.092  Sum_probs=56.8

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--------CCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--------ALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------g~~~~v~~~~~D~~~  173 (313)
                      +.++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.++++++.+        ++. ++.++.+|+..
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~  118 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMK  118 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHH
Confidence            45788999999999999999999864 468999999999999999999887        775 79999999876

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=9.8e-10  Score=91.68  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=65.7

Q ss_pred             EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..++.-...+...+.+.++.+|||+|||+|..+..+++   ....|+|+|+|+.+++.++++++.+++. +++++.+|+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~   93 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAE   93 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHH
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCcc
Confidence            34445555666777888999999999999999999988   3479999999999999999999999985 7999999986


Q ss_pred             C
Q 021397          173 T  173 (313)
Q Consensus       173 ~  173 (313)
                      .
T Consensus        94 ~   94 (183)
T 2yxd_A           94 D   94 (183)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.08  E-value=5.4e-10  Score=105.82  Aligned_cols=90  Identities=20%  Similarity=0.272  Sum_probs=70.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-----C-CC-CcEEEEecCCCCCCc----
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-----A-LG-DRCRLFVADGTTFSL----  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-----g-~~-~~v~~~~~D~~~~d~----  176 (313)
                      +.++.+|||+|||+|..+..+++..+..+.|+++|+|+.+++.++++++++     | .. .+++++.+|+..+..    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            568899999999999999999999865679999999999999999998766     4 21 379999999987621    


Q ss_pred             cccccccCccccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      .+.+..||.+.+..++...++
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d  181 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTN  181 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSC
T ss_pred             CCCCCCEEEEEEccchhcCCC
Confidence            112345666677776655443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.07  E-value=5.9e-10  Score=100.64  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=81.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++++..|+..+++++.+|+..++. ..+..||.+.|.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~v~~~  143 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HLETPVDLILFH  143 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GCSSCEEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hcCCCceEEEEC
Confidence            3689999999999999999986   368999999999999999999998886689999999987652 124556666777


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +++.+.++.                  ...+....+++           +|||+++.++..
T Consensus       144 ~~l~~~~~~------------------~~~l~~~~~~L-----------kpgG~l~~~~~~  175 (285)
T 4htf_A          144 AVLEWVADP------------------RSVLQTLWSVL-----------RPGGVLSLMFYN  175 (285)
T ss_dssp             SCGGGCSCH------------------HHHHHHHHHTE-----------EEEEEEEEEEEB
T ss_pred             chhhcccCH------------------HHHHHHHHHHc-----------CCCeEEEEEEeC
Confidence            777655542                  11223334444           559999988764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.07  E-value=1.4e-09  Score=93.61  Aligned_cols=112  Identities=15%  Similarity=0.068  Sum_probs=80.7

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      +...+....++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++    .+.. +++++.+|+..+   ..+
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~-~~~~~~~d~~~~---~~~  105 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLD-NVEFRQQDLFDW---TPD  105 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCT-TEEEEECCTTSC---CCS
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCC-CeEEEecccccC---CCC
Confidence            3333334778889999999999999999987   3689999999999999987    5654 799999999776   234


Q ss_pred             cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..||.+.|..++.+.++.                ....++....+.+           +|||.++.++..
T Consensus       106 ~~~D~v~~~~~l~~~~~~----------------~~~~~l~~~~~~L-----------~pgG~l~~~~~~  148 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPDD----------------RFEAFWESVRSAV-----------APGGVVEFVDVT  148 (218)
T ss_dssp             SCEEEEEEESCGGGSCHH----------------HHHHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             CceeEEEEechhhcCCHH----------------HHHHHHHHHHHHc-----------CCCeEEEEEeCC
Confidence            555656777766554431                0122233334444           559999999887

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.06  E-value=4.5e-10  Score=94.36  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=65.8

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .++.....+...+.+.++.+|||+|||+|..+..+++..   ..|+++|+|+.+++.++++++..++.+++.++.+|+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence            344555666677788999999999999999999998764   68999999999999999999999985579999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.06  E-value=7.1e-11  Score=103.94  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCC-HHHHHHH---HHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA-RHRLAAC---RTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s-~~~l~~~---~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .+++++|||+|||+|..+..+++..+ ...|+|+|+| +.+++.+   ++++++.++. ++.++.+|+..++.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPF   92 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCG
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhh
Confidence            36889999999999999999997543 4789999999 6777666   8888788886 79999999988754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.06  E-value=3.6e-10  Score=105.33  Aligned_cols=62  Identities=16%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|.+|||+|||+|+.++. ++  + ...|+|+|+|+.+++.+++|++.+++.++++++++|+..+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~  255 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV  255 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence            5789999999999999999 76  3 4799999999999999999999999866899999999754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.06  E-value=8.7e-10  Score=94.58  Aligned_cols=76  Identities=13%  Similarity=0.076  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           97 AASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        97 ~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +....+...+.  +.++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.++++++..++. +++++.+|+..+
T Consensus        45 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  121 (205)
T 3grz_A           45 QTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLAD  121 (205)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTT
T ss_pred             ccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEecccccc
Confidence            33444444444  678899999999999999998874 3 369999999999999999999999986 499999998764


Q ss_pred             C
Q 021397          175 S  175 (313)
Q Consensus       175 d  175 (313)
                      .
T Consensus       122 ~  122 (205)
T 3grz_A          122 V  122 (205)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.05  E-value=8.6e-10  Score=99.63  Aligned_cols=83  Identities=19%  Similarity=0.068  Sum_probs=67.6

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccccc
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL  183 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l  183 (313)
                      ..+...++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++...++  +++++.+|+..++.   +..|
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~---~~~f  185 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI---QENY  185 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC---CSCE
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc---cCCc
Confidence            3444457899999999999999999986   35899999999999999999999988  69999999987654   4445


Q ss_pred             Ccccccccccc
Q 021397          184 DPGSCNSVLQE  194 (313)
Q Consensus       184 ~~~s~sg~l~~  194 (313)
                      |.+.+..++.+
T Consensus       186 D~i~~~~~~~~  196 (286)
T 3m70_A          186 DFIVSTVVFMF  196 (286)
T ss_dssp             EEEEECSSGGG
T ss_pred             cEEEEccchhh
Confidence            55566666653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.05  E-value=4.3e-10  Score=106.28  Aligned_cols=89  Identities=19%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             ccccCCeEEEe------cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397           85 MAYKQGKIYGI------DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus        85 ~~~~~G~~~~Q------d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      ..++.|+-..|      ..-+..+..+. ..++.+|||+|||+|+.+..++.... .+.|+|+|+|+.+++.+++|++.+
T Consensus       187 ~l~~rgyr~~~~~a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~  264 (373)
T 3tm4_A          187 SLHKRPWRVYDHPAHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAA  264 (373)
T ss_dssp             CTTCCTTCCSCCTTCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccccCCcccccCCCCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHc
Confidence            44555654333      22233344455 78899999999999999999998643 358999999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCC
Q 021397          159 ALGDRCRLFVADGTTFS  175 (313)
Q Consensus       159 g~~~~v~~~~~D~~~~d  175 (313)
                      |+.++++++++|+..++
T Consensus       265 gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          265 GVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             TCGGGCEEEECCGGGGG
T ss_pred             CCCCceEEEECChhhCC
Confidence            98668999999987654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.05  E-value=2e-09  Score=94.41  Aligned_cols=67  Identities=25%  Similarity=0.322  Sum_probs=58.3

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+.++++++|||+|||+|..+..+++..++.++|+|+|+|+.+++.+.+++++.   .+++++.+|+...
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~  138 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHP  138 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCG
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCCh
Confidence            345778999999999999999999999865579999999999999988888776   3799999999764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.05  E-value=4.1e-10  Score=106.21  Aligned_cols=67  Identities=13%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +...+++. +.+|||+|||+|.+++.+|+.   ..+|+|+|+|+.+++.+++|++.+|+. +++++.+|+..
T Consensus       206 ~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~  272 (369)
T 3bt7_A          206 ALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEE  272 (369)
T ss_dssp             HHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHH
T ss_pred             HHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHH
Confidence            33445444 678999999999999999873   368999999999999999999999985 79999999843

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.05  E-value=1.7e-09  Score=94.20  Aligned_cols=74  Identities=9%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             HHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEec
Q 021397          100 GAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIG----DSGSVTGVDVARHRLAACRTLLQKYAL----GDRCRLFVA  169 (313)
Q Consensus       100 ~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~----~~~~V~avD~s~~~l~~~~~~~~~~g~----~~~v~~~~~  169 (313)
                      ..+...+  .++++.+|||+|||+|..+..+++..+    +.++|+++|+++.+++.+++++++.++    .++++++.+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence            3444555  578899999999999999999999875    457999999999999999999999883    247999999


Q ss_pred             CCCC
Q 021397          170 DGTT  173 (313)
Q Consensus       170 D~~~  173 (313)
                      |+..
T Consensus       148 d~~~  151 (227)
T 2pbf_A          148 NIYQ  151 (227)
T ss_dssp             CGGG
T ss_pred             ChHh
Confidence            9865

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.04  E-value=8.2e-10  Score=92.84  Aligned_cols=70  Identities=10%  Similarity=0.070  Sum_probs=58.9

Q ss_pred             HHHhc-CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l-~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +...+ ...++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.++++++..++.++++++++|+..
T Consensus        35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence            33444 3457899999999999999988873  3368999999999999999999999986679999999855

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.04  E-value=2.3e-09  Score=94.91  Aligned_cols=80  Identities=18%  Similarity=0.324  Sum_probs=68.5

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecCCC
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVADGT  172 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D~~  172 (313)
                      +....+..+...+++.++++|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.. |. ++++++.+|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~  158 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLE  158 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchh
Confidence            33334456677788999999999999999999999998765689999999999999999999988 84 47999999987


Q ss_pred             CC
Q 021397          173 TF  174 (313)
Q Consensus       173 ~~  174 (313)
                      ..
T Consensus       159 ~~  160 (258)
T 2pwy_A          159 EA  160 (258)
T ss_dssp             GC
T ss_pred             hc
Confidence            65

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.03  E-value=1.2e-09  Score=95.60  Aligned_cols=82  Identities=15%  Similarity=0.223  Sum_probs=65.8

Q ss_pred             eEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhCC-----CcEEEEEcCCHHHHHHHHHHHHHcC----
Q 021397           91 KIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGD-----SGSVTGVDVARHRLAACRTLLQKYA----  159 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~~-----~~~V~avD~s~~~l~~~~~~~~~~g----  159 (313)
                      ....|......+...+  .++++.+|||+|||+|..+..+++..+.     .++|+++|+++.+++.+++++++.+    
T Consensus        63 ~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~  142 (227)
T 1r18_A           63 VTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML  142 (227)
T ss_dssp             EEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc
Confidence            3333444445555666  5788999999999999999999997653     3589999999999999999998876    


Q ss_pred             -CCCcEEEEecCCCC
Q 021397          160 -LGDRCRLFVADGTT  173 (313)
Q Consensus       160 -~~~~v~~~~~D~~~  173 (313)
                       .. +++++.+|+..
T Consensus       143 ~~~-~v~~~~~d~~~  156 (227)
T 1r18_A          143 DSG-QLLIVEGDGRK  156 (227)
T ss_dssp             HHT-SEEEEESCGGG
T ss_pred             CCC-ceEEEECCccc
Confidence             43 79999999865

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.03  E-value=1.1e-09  Score=95.13  Aligned_cols=112  Identities=16%  Similarity=0.199  Sum_probs=81.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC----CcEEEEecCCCCCCcccccccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG----DRCRLFVADGTTFSLAPLRLLL  183 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----~~v~~~~~D~~~~d~v~~D~~l  183 (313)
                      ++++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.+++++...++.    +++.++.+|+..++.  .+..|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~  102 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--HDSSF  102 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--CTTCE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--CCCce
Confidence            357899999999999999999986   368999999999999999998877762    368999999987653  23445


Q ss_pred             CcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          184 DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       184 ~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |.+.+..++.+.++..               ....++....+++           +|||+++.++..
T Consensus       103 D~v~~~~~l~~~~~~~---------------~~~~~l~~~~~~L-----------~pgG~l~~~~~~  143 (235)
T 3sm3_A          103 DFAVMQAFLTSVPDPK---------------ERSRIIKEVFRVL-----------KPGAYLYLVEFG  143 (235)
T ss_dssp             EEEEEESCGGGCCCHH---------------HHHHHHHHHHHHE-----------EEEEEEEEEEEB
T ss_pred             eEEEEcchhhcCCCHH---------------HHHHHHHHHHHHc-----------CCCeEEEEEECC
Confidence            5556666665554420               0112333344444           459999998876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.03  E-value=1.8e-09  Score=102.11  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=67.6

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--cEEEEecCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD--RCRLFVADGT  172 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~--~v~~~~~D~~  172 (313)
                      .|..+.++...+...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++|++.+|+.+  +++++.+|+.
T Consensus       207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~  285 (375)
T 4dcm_A          207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL  285 (375)
T ss_dssp             CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred             ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence            456777888888888889999999999999999999854 4799999999999999999999998753  4888999986


Q ss_pred             C
Q 021397          173 T  173 (313)
Q Consensus       173 ~  173 (313)
                      .
T Consensus       286 ~  286 (375)
T 4dcm_A          286 S  286 (375)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.03  E-value=1.8e-09  Score=94.98  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +++|++|||+|||+|..++.+++.. ..++|+|+|+++.+++.+++|++++|+.++|++..+|+.
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l   76 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL   76 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh
Confidence            4678999999999999999999863 346899999999999999999999999878999999984

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.03  E-value=1.2e-09  Score=98.62  Aligned_cols=83  Identities=23%  Similarity=0.218  Sum_probs=66.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      +.++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.+++++...++..++.++++|+...+.. .+..||.+.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~v~  138 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVIS  138 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCEEE
Confidence            468899999999999999998876 3 3589999999999999999999888766899999999876531 234455556


Q ss_pred             cccccc
Q 021397          188 CNSVLQ  193 (313)
Q Consensus       188 ~sg~l~  193 (313)
                      |.++++
T Consensus       139 ~~~~l~  144 (298)
T 1ri5_A          139 SQFSFH  144 (298)
T ss_dssp             EESCGG
T ss_pred             ECchhh
Confidence            666553

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.02  E-value=7.4e-10  Score=95.48  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++.+|||+|||+|..+..+++..  ...|+|+|+|+.+++.+++|++..++ ++++++++|+..
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~  114 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS  114 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHH
Confidence            68899999999999999877652  25899999999999999999999998 479999999754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.02  E-value=1.8e-09  Score=100.13  Aligned_cols=81  Identities=16%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC----------CCCc
Q 021397           94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA----------LGDR  163 (313)
Q Consensus        94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----------~~~~  163 (313)
                      .....+..+...+++.+|++|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++++          ..++
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            344435556677789999999999999999999999987666899999999999999999998754          2247


Q ss_pred             EEEEecCCCCC
Q 021397          164 CRLFVADGTTF  174 (313)
Q Consensus       164 v~~~~~D~~~~  174 (313)
                      ++++.+|+...
T Consensus       169 v~~~~~d~~~~  179 (336)
T 2b25_A          169 VDFIHKDISGA  179 (336)
T ss_dssp             EEEEESCTTCC
T ss_pred             eEEEECChHHc
Confidence            99999998765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.01  E-value=1.3e-09  Score=96.53  Aligned_cols=88  Identities=13%  Similarity=-0.011  Sum_probs=67.6

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +...+...++.+|||+|||+|..+..+++..  ...|+++|+|+.+++.+++++.    ..+++++.+|+..++.  .+.
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~--~~~  107 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAI--EPD  107 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCC--CTT
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCC--CCC
Confidence            3455666689999999999999999999862  2389999999999999997765    2479999999987653  234


Q ss_pred             ccCccccccccccccc
Q 021397          182 LLDPGSCNSVLQEKDD  197 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~  197 (313)
                      .||.+.|.+++.+.++
T Consensus       108 ~fD~v~~~~~l~~~~~  123 (253)
T 3g5l_A          108 AYNVVLSSLALHYIAS  123 (253)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             CeEEEEEchhhhhhhh
Confidence            5565677777655443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=1.4e-09  Score=98.05  Aligned_cols=84  Identities=25%  Similarity=0.277  Sum_probs=66.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+.+.++.+|||+|||+|..+..+++   ..+.|+|+|+|+.+++.+++++      .++.++.+|+..++.   +
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~---~  115 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV---D  115 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC---S
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc---C
Confidence            345667788899999999999999999998   2479999999999999998764      268899999987663   4


Q ss_pred             cccCcccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKD  196 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p  196 (313)
                      ..||.+.+..++...+
T Consensus       116 ~~fD~v~~~~~l~~~~  131 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVK  131 (279)
T ss_dssp             SCEEEEEEESCGGGCS
T ss_pred             CCcCEEEEcchhhhCc
Confidence            4556567776665444

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.01  E-value=8.3e-10  Score=100.54  Aligned_cols=83  Identities=27%  Similarity=0.322  Sum_probs=64.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEecCCCCCCcc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG--DRCRLFVADGTTFSLA  177 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~~v~~~~~D~~~~d~v  177 (313)
                      ..+...+.+.++ +|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++...++.  .+++++++|+..++. 
T Consensus        73 ~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-  147 (299)
T 3g2m_A           73 REFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-  147 (299)
T ss_dssp             HHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-
T ss_pred             HHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-
Confidence            334455555444 9999999999999999976   368999999999999999999887641  379999999988764 


Q ss_pred             ccccccCccccc
Q 021397          178 PLRLLLDPGSCN  189 (313)
Q Consensus       178 ~~D~~l~~~s~s  189 (313)
                        +..||.+.|+
T Consensus       148 --~~~fD~v~~~  157 (299)
T 3g2m_A          148 --DKRFGTVVIS  157 (299)
T ss_dssp             --SCCEEEEEEC
T ss_pred             --CCCcCEEEEC
Confidence              4445544554

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.00  E-value=8.2e-10  Score=100.66  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=42.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      ++.+|||+|||+|..+..+++..+. ..|+|+|+|+.+++.++++++..+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhh
Confidence            6889999999999999999998764 699999999999999999887665

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.00  E-value=8.3e-10  Score=94.64  Aligned_cols=53  Identities=15%  Similarity=0.337  Sum_probs=44.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +++|.+|||+|||||++|..+++.   .+.|+|+|+++..           ... +++++++|+...+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~-~v~~~~~D~~~~~   75 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIA-GVRFIRCDIFKET   75 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCT-TCEEEECCTTSSS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCC-CeEEEEccccCHH
Confidence            578999999999999999999986   4799999999752           233 6899999987643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.00  E-value=2.3e-09  Score=95.02  Aligned_cols=83  Identities=11%  Similarity=0.019  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .+.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++ ..+. .++.++.+|+..+++  .+..||.+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~~d~~~~~~--~~~~fD~v  108 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVD-RKVQVVQADARAIPL--PDESVHGV  108 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSC-TTEEEEESCTTSCCS--CTTCEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccC-CceEEEEcccccCCC--CCCCeeEE
Confidence            5678899999999999999999875   368999999999999999887 3333 479999999987653  23445555


Q ss_pred             cccccccccc
Q 021397          187 SCNSVLQEKD  196 (313)
Q Consensus       187 s~sg~l~~~p  196 (313)
                      .+..+++..+
T Consensus       109 ~~~~~l~~~~  118 (263)
T 2yqz_A          109 IVVHLWHLVP  118 (263)
T ss_dssp             EEESCGGGCT
T ss_pred             EECCchhhcC
Confidence            6666665444

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.99  E-value=1.4e-09  Score=93.25  Aligned_cols=111  Identities=9%  Similarity=0.037  Sum_probs=76.7

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      ...++.+|||+|||+|..+..++...  ...|+|+|+|+.+++.++++++..+.  ++.++.+|+..++.  .+..||.+
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~~fD~v   93 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPF--KDESMSFV   93 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCS--CTTCEEEE
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCC--CCCceeEE
Confidence            35678999999999999865555443  36899999999999999999988774  68899999987653  13344544


Q ss_pred             cccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       187 s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .+.+++.+.+.                ......+....+.+           +|||.++.++.+
T Consensus        94 ~~~~~l~~~~~----------------~~~~~~l~~~~~~L-----------kpgG~l~~~~~~  130 (209)
T 2p8j_A           94 YSYGTIFHMRK----------------NDVKEAIDEIKRVL-----------KPGGLACINFLT  130 (209)
T ss_dssp             EECSCGGGSCH----------------HHHHHHHHHHHHHE-----------EEEEEEEEEEEE
T ss_pred             EEcChHHhCCH----------------HHHHHHHHHHHHHc-----------CCCcEEEEEEec
Confidence            66555543210                00112233334444           559999999887

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.99  E-value=3.1e-09  Score=93.76  Aligned_cols=65  Identities=14%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +++|++|||+|||+|..++.+++. +...+|+|+|+++.+++.+++|++++|+.++|++..+|+..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~   83 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS   83 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            567899999999999999999986 33468999999999999999999999998789999999854

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.98  E-value=1.6e-09  Score=93.66  Aligned_cols=109  Identities=14%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccccc
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL  183 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l  183 (313)
                      ..+.+.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++.     .+++++.+|+..++..   ..|
T Consensus        39 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~---~~f  107 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP---TSI  107 (220)
T ss_dssp             HHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC---SCC
T ss_pred             HHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC---CCe
Confidence            3344568899999999999999999986   3689999999999999997754     3688999999876542   345


Q ss_pred             CcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          184 DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       184 ~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |.+.|.+++.+.++..                ...++....+.+           ||||.++.++..
T Consensus       108 D~v~~~~~l~~~~~~~----------------~~~~l~~~~~~L-----------kpgG~l~i~~~~  147 (220)
T 3hnr_A          108 DTIVSTYAFHHLTDDE----------------KNVAIAKYSQLL-----------NKGGKIVFADTI  147 (220)
T ss_dssp             SEEEEESCGGGSCHHH----------------HHHHHHHHHHHS-----------CTTCEEEEEEEC
T ss_pred             EEEEECcchhcCChHH----------------HHHHHHHHHHhc-----------CCCCEEEEEecc
Confidence            5556777665544320                012233334444           559999998765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.98  E-value=1.3e-09  Score=98.16  Aligned_cols=57  Identities=19%  Similarity=0.107  Sum_probs=49.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      ...+...+.+.+|.+|||+|||+|..+..+++.   ...|+|+|+|+.|++.++++++..
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc
Confidence            344566778899999999999999999999985   368999999999999999887544

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.98  E-value=2.9e-09  Score=92.88  Aligned_cols=65  Identities=23%  Similarity=0.334  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+.++++|||+|||+|..+..+++..+..+.|+|+|+|+.+++.+++++++.   .+++++.+|+...
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~  134 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKP  134 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCG
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCc
Confidence            3778999999999999999999998865689999999999999999988765   3799999998763

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.97  E-value=3.2e-09  Score=93.70  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=67.1

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      ....+...++.+|||+|||+|..+..+++..  ...|+++|+|+.+++.+++++...   .++.++.+|+..++.  .+.
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~--~~~  157 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL--PPN  157 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC--CSS
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC--CCC
Confidence            3445566788999999999999999999875  358999999999999999887554   379999999877653  233


Q ss_pred             ccCccccccccccc
Q 021397          182 LLDPGSCNSVLQEK  195 (313)
Q Consensus       182 ~l~~~s~sg~l~~~  195 (313)
                      .||.+.|..++.+.
T Consensus       158 ~fD~v~~~~~l~~~  171 (254)
T 1xtp_A          158 TYDLIVIQWTAIYL  171 (254)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CeEEEEEcchhhhC
Confidence            45555666666544

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.96  E-value=2.4e-09  Score=101.75  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH-------HHcCCC-CcEEEEecCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL-------QKYALG-DRCRLFVADGT  172 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~-------~~~g~~-~~v~~~~~D~~  172 (313)
                      .+...+.+++|++|||+|||+|..++.+|...+ ..+|+|+|+++.+++.+++++       +.+|+. ++|+++++|+.
T Consensus       164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~  242 (438)
T 3uwp_A          164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  242 (438)
T ss_dssp             HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence            355667899999999999999999999998764 357999999999999998765       345652 58999999998


Q ss_pred             CCCc
Q 021397          173 TFSL  176 (313)
Q Consensus       173 ~~d~  176 (313)
                      .+++
T Consensus       243 ~lp~  246 (438)
T 3uwp_A          243 SEEW  246 (438)
T ss_dssp             SHHH
T ss_pred             CCcc
Confidence            7654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.96  E-value=2e-09  Score=98.87  Aligned_cols=113  Identities=12%  Similarity=0.013  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEecCCCC------CCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-----RCRLFVADGTT------FSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-----~v~~~~~D~~~------~d~v~  178 (313)
                      +|.+|||+|||+|+.+..++..  +.+.|+|+|+|+.|++.|+++....+...     ++++.+.|+..      ++...
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            5889999999999877665542  23689999999999999999887776421     25677777632      11111


Q ss_pred             cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .+..||.++|..+++..      |....         +..++....+++           ||||+++.+|..
T Consensus       126 ~~~~FD~V~~~~~lhy~------~~~~~---------~~~~l~~~~r~L-----------kpGG~~i~~~~~  171 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYS------FHPRH---------YATVMNNLSELT-----------ASGGKVLITTMD  171 (302)
T ss_dssp             CSSCEEEEEEESCGGGT------CSTTT---------HHHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             cCCCeeEEEECchHHHh------CCHHH---------HHHHHHHHHHHc-----------CCCCEEEEEeCC
Confidence            23456666887766431      11110         023344445555           459999998875

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.95  E-value=7.1e-09  Score=92.21  Aligned_cols=65  Identities=9%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.+|++|||+|||+|..++.+++. +....|+|+|+++.+++.+++|++++|+.++|++..+|+..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~   83 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA   83 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh
Confidence            567899999999999999999986 33468999999999999999999999998789999999754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.95  E-value=2.8e-09  Score=93.36  Aligned_cols=88  Identities=20%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...+...++.+|||+|||+|..+..+++. + ...|+++|+|+.+++.+++++..    .++.++.+|+..++.  .+
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~--~~  105 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHL--PQ  105 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCC--CT
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccC--CC
Confidence            4556777778999999999999999999886 2 23899999999999999876532    268999999877653  23


Q ss_pred             cccCcccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKD  196 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p  196 (313)
                      ..||.+.+..++.+.+
T Consensus       106 ~~fD~v~~~~~l~~~~  121 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVE  121 (243)
T ss_dssp             TCEEEEEEESCGGGCS
T ss_pred             CCceEEEEeccccccc
Confidence            3455556666665443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.95  E-value=3.7e-09  Score=91.60  Aligned_cols=76  Identities=20%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.++++++..+.  +++++.+|+..++.  .+..||.+.+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~~~D~v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF--EDKTFDYVIF  109 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS--CTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC--CceEEECchhcCCC--CCCcEEEEEE
Confidence            458899999999999999998863   3899999999999999999988873  79999999877653  1233444455


Q ss_pred             ccc
Q 021397          189 NSV  191 (313)
Q Consensus       189 sg~  191 (313)
                      ...
T Consensus       110 ~~~  112 (227)
T 1ve3_A          110 IDS  112 (227)
T ss_dssp             ESC
T ss_pred             cCc
Confidence            554

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.95  E-value=6.6e-09  Score=91.73  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +...++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++...+.  ++.++++|+..++
T Consensus        37 ~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           37 DAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             hcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            34567889999999999999999985   36899999999999999999988886  6899999998765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.94  E-value=2.3e-09  Score=100.02  Aligned_cols=76  Identities=20%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |..+.++...+.+.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..++.  ++++.+|+..+
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEcccccc
Confidence            45677788888777888999999999999999998753 368999999999999999999998873  67788888653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.94  E-value=1.7e-09  Score=94.68  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=62.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS  190 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg  190 (313)
                      +.+|||+|||+|..+..+++   ....|+|+|+|+.+++.+++++...+...+++++.+|+..++.   +..||.+.+.+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~  140 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP---TELFDLIFDYV  140 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC---SSCEEEEEEES
T ss_pred             CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC---CCCeeEEEECh
Confidence            45999999999999998876   3468999999999999999998876554579999999987652   33455556666


Q ss_pred             ccccc
Q 021397          191 VLQEK  195 (313)
Q Consensus       191 ~l~~~  195 (313)
                      ++...
T Consensus       141 ~l~~~  145 (235)
T 3lcc_A          141 FFCAI  145 (235)
T ss_dssp             STTTS
T ss_pred             hhhcC
Confidence            66543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.94  E-value=4.3e-09  Score=92.28  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.++++.+|||+|||+|..+..+++..+ .+.|+|+|+|+.+++.++++++..   .++.++.+|+..
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~  133 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANK  133 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTC
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCC
Confidence            4567899999999999999999999876 579999999999999999987655   379999999876

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.94  E-value=5.8e-09  Score=89.35  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.++++++..++. +++++.+|+..+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC
Confidence            478999999999999999998864 479999999999999999999999986 5999999997754

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.94  E-value=1.4e-09  Score=99.96  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=62.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+...+.+++|.+|||+|||+|+.|..+++..+ .++|+|+|+|+.+++.++++++.+|  ++++++++|+..
T Consensus        17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~   86 (301)
T 1m6y_A           17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE   86 (301)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHH
Confidence            355677889999999999999999999999875 4799999999999999999998888  379999999853

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.93  E-value=4.7e-09  Score=91.81  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.+++++...+.  ++.++++|+..++..   ..||.+.|.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~~  108 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN---RKFDLITCC  108 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS---CCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc---CCceEEEEc
Confidence            7889999999999999999876   25899999999999999999988876  689999998776532   334444665


Q ss_pred             c-ccccc
Q 021397          190 S-VLQEK  195 (313)
Q Consensus       190 g-~l~~~  195 (313)
                      . ++.+.
T Consensus       109 ~~~l~~~  115 (246)
T 1y8c_A          109 LDSTNYI  115 (246)
T ss_dssp             TTGGGGC
T ss_pred             Ccccccc
Confidence            5 55443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.93  E-value=6.1e-09  Score=98.68  Aligned_cols=74  Identities=27%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             cHHHHHHHHhc------CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397           96 DAASGAAVSAL------NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA  169 (313)
Q Consensus        96 d~ss~~~~~~l------~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~  169 (313)
                      |..+.++...+      ...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++|++.+++  +++++.+
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEc
Confidence            45555544443      2347889999999999999999986   36999999999999999999999987  4899999


Q ss_pred             CCCCC
Q 021397          170 DGTTF  174 (313)
Q Consensus       170 D~~~~  174 (313)
                      |+..+
T Consensus       288 D~~~~  292 (381)
T 3dmg_A          288 DVDEA  292 (381)
T ss_dssp             STTTT
T ss_pred             chhhc
Confidence            98654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.93  E-value=5.5e-09  Score=106.44  Aligned_cols=93  Identities=20%  Similarity=0.319  Sum_probs=73.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc------CCCCcEEEEecCCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY------ALGDRCRLFVADGTTFS  175 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~~v~~~~~D~~~~d  175 (313)
                      +...+...++.+|||+|||+|..+..+++..++...|+|+|+|+.+++.++++++..      ++. +++++++|+..++
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~dLp  791 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILEFD  791 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTSCC
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHhCC
Confidence            445556668999999999999999999986533469999999999999999977643      554 7999999998876


Q ss_pred             ccccccccCccccccccccccc
Q 021397          176 LAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       176 ~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      .  .+..||.+.|..++.+.++
T Consensus       792 ~--~d~sFDlVV~~eVLeHL~d  811 (950)
T 3htx_A          792 S--RLHDVDIGTCLEVIEHMEE  811 (950)
T ss_dssp             T--TSCSCCEEEEESCGGGSCH
T ss_pred             c--ccCCeeEEEEeCchhhCCh
Confidence            5  2455666688888876554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.92  E-value=1e-09  Score=96.52  Aligned_cols=63  Identities=8%  Similarity=-0.025  Sum_probs=54.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ++++.+|||+|||+|..+..+++. + ...|+++|+|+.+++.++++++..+.  +++++.+|+..+
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~  120 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA-P-IDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDV  120 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS-C-EEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHH
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHHHhcCC--CeEEEecCHHHh
Confidence            578899999999999999999753 2 24899999999999999999887773  799999998654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.92  E-value=2.5e-09  Score=95.55  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA  177 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v  177 (313)
                      -...+...+.+.++.+|||+|||+|..+..+++   ...+|+|+|+|+.+++.++++.       +++++.+|+..++. 
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~-   90 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL-   90 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS-
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC-
Confidence            345566677788899999999999999999997   2479999999999998776543       68999999987663 


Q ss_pred             ccccccCccccccccccccc
Q 021397          178 PLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       178 ~~D~~l~~~s~sg~l~~~p~  197 (313)
                       .+..||.+.|..++.+.++
T Consensus        91 -~~~~fD~v~~~~~l~~~~~  109 (261)
T 3ege_A           91 -PDKSVDGVISILAIHHFSH  109 (261)
T ss_dssp             -CTTCBSEEEEESCGGGCSS
T ss_pred             -CCCCEeEEEEcchHhhccC
Confidence             2455666677777765443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.92  E-value=4e-09  Score=98.34  Aligned_cols=72  Identities=21%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +...+...++.+|||+|||+|..+..+++. + ..+|+|+|+|+ +++.++++++..|+.++++++.+|+..++.
T Consensus        56 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  127 (340)
T 2fyt_A           56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL  127 (340)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHhhhhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC
Confidence            334455678999999999999999999886 3 35899999996 999999999999986689999999987653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.92  E-value=3.8e-09  Score=90.87  Aligned_cols=77  Identities=16%  Similarity=0.067  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      .+.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++       ++.++.+|+..++   .+..||.+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~---~~~~fD~v  106 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD---AIDAYDAV  106 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC---CCSCEEEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC---CCCcEEEE
Confidence            3567899999999999999999986   368999999999999999886       3557788887766   34556666


Q ss_pred             cccccccccc
Q 021397          187 SCNSVLQEKD  196 (313)
Q Consensus       187 s~sg~l~~~p  196 (313)
                      .|.+++.+.+
T Consensus       107 ~~~~~l~~~~  116 (211)
T 3e23_A          107 WAHACLLHVP  116 (211)
T ss_dssp             EECSCGGGSC
T ss_pred             EecCchhhcC
Confidence            7777665543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.92  E-value=3.5e-09  Score=93.15  Aligned_cols=82  Identities=18%  Similarity=0.058  Sum_probs=63.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++..  ...|+++|+|+.+++.+++++...+. .++.++.+|+..++..  +..||.+.+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPE--PDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCC--SSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCC--CCCEEEEEEc
Confidence            68899999999999999988764  35899999999999999999877653 3689999998766532  2345555666


Q ss_pred             ccccccc
Q 021397          190 SVLQEKD  196 (313)
Q Consensus       190 g~l~~~p  196 (313)
                      .++.+.+
T Consensus       154 ~~l~~~~  160 (241)
T 2ex4_A          154 WVIGHLT  160 (241)
T ss_dssp             SCGGGSC
T ss_pred             chhhhCC
Confidence            6665444

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.92  E-value=6.8e-09  Score=90.90  Aligned_cols=105  Identities=12%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      +.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++.   . ..+++++.+|+..++.  .+..||.+.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~-~~~~~~~~~d~~~~~~--~~~~fD~v~  121 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---E-GPDLSFIKGDLSSLPF--ENEQFEAIM  121 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---C-BTTEEEEECBTTBCSS--CTTCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---c-cCCceEEEcchhcCCC--CCCCccEEE
Confidence            357889999999999999999986   368999999999999998764   2 2479999999987663  244556667


Q ss_pred             ccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       188 ~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |..++.+.++.                  ..++....+.+           +|||+++.++..
T Consensus       122 ~~~~l~~~~~~------------------~~~l~~~~~~L-----------~pgG~l~i~~~~  155 (242)
T 3l8d_A          122 AINSLEWTEEP------------------LRALNEIKRVL-----------KSDGYACIAILG  155 (242)
T ss_dssp             EESCTTSSSCH------------------HHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             EcChHhhccCH------------------HHHHHHHHHHh-----------CCCeEEEEEEcC
Confidence            77777655442                  11223334444           559999998865

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.92  E-value=1.9e-08  Score=88.38  Aligned_cols=76  Identities=21%  Similarity=0.313  Sum_probs=66.0

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ...+..+...+++.+|++|||+|||+|..+..+++.   .++|+++|+++.+++.++++++.+++..+++++.+|+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA  152 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc
Confidence            344456677788899999999999999999999997   3799999999999999999999999866899999998653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.92  E-value=1.8e-08  Score=94.13  Aligned_cols=93  Identities=13%  Similarity=0.053  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .....+...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++++.++.++++++.+|+...+.
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  254 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  254 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence            3344556667778889999999999999999999865 469999999 99999999999999987679999999876543


Q ss_pred             cccccccCccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEK  195 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~  195 (313)
                      ...    |.+.+..+++..
T Consensus       255 ~~~----D~v~~~~vlh~~  269 (359)
T 1x19_A          255 PEA----DAVLFCRILYSA  269 (359)
T ss_dssp             CCC----SEEEEESCGGGS
T ss_pred             CCC----CEEEEechhccC
Confidence            222    333555555443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.91  E-value=4.2e-09  Score=94.23  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH----------c------CCCCcEEEEec
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK----------Y------ALGDRCRLFVA  169 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~----------~------g~~~~v~~~~~  169 (313)
                      +.+.++.+|||+|||+|..+..|++.   +..|+|+|+|+.+++.++++...          .      ....+++++++
T Consensus        64 ~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (252)
T 2gb4_A           64 LKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC  140 (252)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             ccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence            34568899999999999999999985   25899999999999999765421          0      01137999999


Q ss_pred             CCCCCCccccc-cccCcccccccccc
Q 021397          170 DGTTFSLAPLR-LLLDPGSCNSVLQE  194 (313)
Q Consensus       170 D~~~~d~v~~D-~~l~~~s~sg~l~~  194 (313)
                      |+..++..  + ..||.+.+.+++..
T Consensus       141 D~~~l~~~--~~~~FD~V~~~~~l~~  164 (252)
T 2gb4_A          141 SIFDLPRA--NIGKFDRIWDRGALVA  164 (252)
T ss_dssp             CTTTGGGG--CCCCEEEEEESSSTTT
T ss_pred             ccccCCcc--cCCCEEEEEEhhhhhh
Confidence            99876542  2 34444455555543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.91  E-value=2.3e-09  Score=91.47  Aligned_cols=62  Identities=24%  Similarity=0.392  Sum_probs=54.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..++ +|||+|||+|..+..+++.   ...|+++|+|+.+++.+++++...+.  ++.++.+|+..++
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   89 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD   89 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC
Confidence            3567 9999999999999998875   35899999999999999999998887  6999999987765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.91  E-value=2.2e-09  Score=93.86  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=62.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ..++.+|||+|||+|..+..+++..   ..|+|+|+|+.+++.+++++..     +++++++|+..+.   .+..||.+.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---~~~~fD~v~  108 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---LPRRYDNIV  108 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---CSSCEEEEE
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---cCCcccEEE
Confidence            3577899999999999999998752   4799999999999999877532     6899999987762   345566668


Q ss_pred             cccccccccc
Q 021397          188 CNSVLQEKDD  197 (313)
Q Consensus       188 ~sg~l~~~p~  197 (313)
                      |..++.+.++
T Consensus       109 ~~~~l~~~~~  118 (250)
T 2p7i_A          109 LTHVLEHIDD  118 (250)
T ss_dssp             EESCGGGCSS
T ss_pred             EhhHHHhhcC
Confidence            8887776554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.90  E-value=1.4e-09  Score=96.16  Aligned_cols=79  Identities=16%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CeEEEe-cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHH---hCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 021397           90 GKIYGI-DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI---IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR  165 (313)
Q Consensus        90 G~~~~Q-d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~---~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~  165 (313)
                      |....| .....++..++...++.+|||+|||+|+.|..+++.   +++.++|+|+|+|+.+++.++      ++.++++
T Consensus        60 ~~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~  133 (236)
T 2bm8_A           60 GLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENIT  133 (236)
T ss_dssp             TEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEE
T ss_pred             cccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceE
Confidence            334445 333344445555556789999999999999999997   455689999999999998776      1224799


Q ss_pred             EEecCCCCC
Q 021397          166 LFVADGTTF  174 (313)
Q Consensus       166 ~~~~D~~~~  174 (313)
                      ++++|+..+
T Consensus       134 ~~~gD~~~~  142 (236)
T 2bm8_A          134 LHQGDCSDL  142 (236)
T ss_dssp             EEECCSSCS
T ss_pred             EEECcchhH
Confidence            999999875

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.90  E-value=6.1e-09  Score=91.11  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++.+|||+|||+|..+..+++.    ..|+++|+|+.+++.+++++...+.  +++++.+|+..++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   92 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRELE   92 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGGCC
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhhcC
Confidence            46789999999999999988864    6899999999999999999988774  6899999987764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.90  E-value=2.5e-09  Score=94.61  Aligned_cols=64  Identities=8%  Similarity=0.084  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH------cCCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK------YALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------~g~~~~v~~~~~D~~~  173 (313)
                      ..++.+|||+|||+|..+..+|+..+ ...|+|+|+|+.+++.++++++.      .++. |+.++++|+..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~  113 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMK  113 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHH
Confidence            34677999999999999999998764 46899999999999999988765      3554 79999999975

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.89  E-value=3.3e-09  Score=95.93  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC---CcEEEEecCCCCCCc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG---DRCRLFVADGTTFSL  176 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---~~v~~~~~D~~~~d~  176 (313)
                      ..+...+...++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++...+..   .++.+..+|+..++.
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            44555566678899999999999999999986   258999999999999999887554422   257888888876541


Q ss_pred             -cccccccCccccc-ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          177 -APLRLLLDPGSCN-SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       177 -v~~D~~l~~~s~s-g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                       ...+..||.+.|. .++.+.++....  .         .....++..+.+++           +|||+++.+++.
T Consensus       124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~--~---------~~~~~~l~~~~~~L-----------kpgG~l~~~~~~  177 (293)
T 3thr_A          124 DVPAGDGFDAVICLGNSFAHLPDSKGD--Q---------SEHRLALKNIASMV-----------RPGGLLVIDHRN  177 (293)
T ss_dssp             HSCCTTCEEEEEECTTCGGGSCCSSSS--S---------HHHHHHHHHHHHTE-----------EEEEEEEEEEEC
T ss_pred             ccccCCCeEEEEEcChHHhhcCccccC--H---------HHHHHHHHHHHHHc-----------CCCeEEEEEeCC
Confidence             0123455656776 466555542100  0         01122334444555           559999988875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.88  E-value=1.3e-08  Score=97.90  Aligned_cols=70  Identities=11%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHH-------HHHHHHcCCC-CcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC-------RTLLQKYALG-DRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~-------~~~~~~~g~~-~~v~~~~~D~~  172 (313)
                      +...+++++|++|||+|||+|..+..+|+..+. ..|+|+|+++.+++.+       +++++.+|+. .+++++.+|..
T Consensus       234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            445678889999999999999999999998753 5899999999998888       9999999942 47999988654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.88  E-value=4.6e-09  Score=96.27  Aligned_cols=81  Identities=12%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..+......++..+++.++++|||+|||+|..|..+++.   .+.|+|+|+++.+++.++++++..+.. +++++.+|+
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~-~v~~~~~D~   99 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYN-NLEVYEGDA   99 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCC-CEEC----C
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECch
Confidence            5556667777888889999999999999999999999875   368999999999999999999888874 799999999


Q ss_pred             CCCCc
Q 021397          172 TTFSL  176 (313)
Q Consensus       172 ~~~d~  176 (313)
                      ..++.
T Consensus       100 ~~~~~  104 (299)
T 2h1r_A          100 IKTVF  104 (299)
T ss_dssp             CSSCC
T ss_pred             hhCCc
Confidence            76653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.88  E-value=4.7e-09  Score=98.22  Aligned_cols=65  Identities=12%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.++.+|||+|||+|..+..+++. + ..+|+|+|+| .+++.++++++..++.++++++.+|+..++
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~  128 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE  128 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc
Confidence            457899999999999999999986 3 4699999999 599999999999999877999999998764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.87  E-value=6.2e-09  Score=92.38  Aligned_cols=63  Identities=8%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++.+|||+|||+|..+..+++..++ .+|+|+|+|+.+++.++++++.+++.++++++++|+..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT  127 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence            5779999999999999999987643 79999999999999999999999987679999998643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.87  E-value=8.1e-09  Score=93.94  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..+......++..+++.++++|||+|||+|..|..+++..   .+|+|+|+|+.+++.++++++..+..++++++++|+
T Consensus        10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~   86 (285)
T 1zq9_A           10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV   86 (285)
T ss_dssp             EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence            34455556677788889999999999999999999999872   589999999999999999988777645799999999


Q ss_pred             CCCCccccc
Q 021397          172 TTFSLAPLR  180 (313)
Q Consensus       172 ~~~d~v~~D  180 (313)
                      ..++...+|
T Consensus        87 ~~~~~~~fD   95 (285)
T 1zq9_A           87 LKTDLPFFD   95 (285)
T ss_dssp             TTSCCCCCS
T ss_pred             ecccchhhc
Confidence            876543333

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.87  E-value=5.2e-09  Score=98.92  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .+...++.+|||+|||+|..+..+++. + ..+|+|+|+| .+++.++++++..++.++++++++|+..++.
T Consensus        58 ~~~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  126 (376)
T 3r0q_C           58 NKHHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL  126 (376)
T ss_dssp             TTTTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC
T ss_pred             ccccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc
Confidence            345678999999999999999999986 3 3599999999 9999999999999998789999999987653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.86  E-value=9.9e-09  Score=95.94  Aligned_cols=71  Identities=14%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +...+...++.+|||+|||+|..+..+++.  +..+|+|+|+|+ +++.++++++..|+.++++++.+|+..++
T Consensus        42 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~  112 (348)
T 2y1w_A           42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS  112 (348)
T ss_dssp             HHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred             HHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC
Confidence            444556678999999999999999999885  336999999996 88999999999998778999999998764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.86  E-value=2.1e-09  Score=93.06  Aligned_cols=71  Identities=18%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH----HHcCCCCcEEEEecCCCCCCc
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL----QKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~----~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ..+.++++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.|++.+.+++    +..++. +++++++|+..++.
T Consensus        21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~   95 (218)
T 3mq2_A           21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPP   95 (218)
T ss_dssp             HHHHTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCS
T ss_pred             HHhhccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCC
Confidence            445578899999999999999999999753 479999999999988654433    345664 79999999988664

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.86  E-value=1.6e-08  Score=92.58  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC------CCCcEEEEecCCCCCCc--cccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA------LGDRCRLFVADGTTFSL--APLR  180 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g------~~~~v~~~~~D~~~~d~--v~~D  180 (313)
                      .++.+|||+|||+|..+..+++.  ....|+++|+|+.+++.++++....+      ...++.++++|+..++.  .+.+
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  110 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD  110 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence            37889999999999999999873  34699999999999999999887652      12379999999987652  1112


Q ss_pred             --cccCccccccccc
Q 021397          181 --LLLDPGSCNSVLQ  193 (313)
Q Consensus       181 --~~l~~~s~sg~l~  193 (313)
                        ..||.+.|..+++
T Consensus       111 ~~~~fD~V~~~~~l~  125 (313)
T 3bgv_A          111 PQMCFDICSCQFVCH  125 (313)
T ss_dssp             TTCCEEEEEEETCGG
T ss_pred             CCCCEEEEEEecchh
Confidence              2566667766653

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.85  E-value=1.2e-08  Score=94.12  Aligned_cols=89  Identities=16%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             HHHHhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397          101 AAVSALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus       101 ~~~~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      .+...++.  .++.+|||+|||+|..+..+++..+ ..+++++|++ .+++.+++++.+.++.++++++.+|+...+.. 
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-  230 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG-  230 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC-
Confidence            44455666  7889999999999999999999875 3699999999 99999999999999876799999998765321 


Q ss_pred             cccccCcccccccccc
Q 021397          179 LRLLLDPGSCNSVLQE  194 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~  194 (313)
                        ..+|.+.+..+++.
T Consensus       231 --~~~D~v~~~~~l~~  244 (335)
T 2r3s_A          231 --NDYDLVLLPNFLHH  244 (335)
T ss_dssp             --SCEEEEEEESCGGG
T ss_pred             --CCCcEEEEcchhcc
Confidence              11444466655544

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.85  E-value=3.8e-09  Score=98.51  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=68.9

Q ss_pred             CeEEEecHHHHHHHHhc----CCCCCCEEEEECCCcChHHHHHHHHhCCC----cEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           90 GKIYGIDAASGAAVSAL----NISAGDHVLDLCAAPGAKLCMILDIIGDS----GSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l----~~~~g~~VLDlcagpG~kt~~la~~~~~~----~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      |.++-.+..+.+++.++    ++.++.+|||+|||+|+.+..+++.++..    ..|+|+|+++.+++.++.|+...|+ 
T Consensus       106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-  184 (344)
T 2f8l_A          106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-  184 (344)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred             CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-
Confidence            54444444444434333    56678899999999999999999887532    6899999999999999999998888 


Q ss_pred             CcEEEEecCCCC------CCccccccc
Q 021397          162 DRCRLFVADGTT------FSLAPLRLL  182 (313)
Q Consensus       162 ~~v~~~~~D~~~------~d~v~~D~~  182 (313)
                       ++.++++|+..      ||++..+|.
T Consensus       185 -~~~i~~~D~l~~~~~~~fD~Ii~NPP  210 (344)
T 2f8l_A          185 -KMTLLHQDGLANLLVDPVDVVISDLP  210 (344)
T ss_dssp             -CCEEEESCTTSCCCCCCEEEEEEECC
T ss_pred             -CceEEECCCCCccccCCccEEEECCC
Confidence             58899999743      444555543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.85  E-value=6.3e-09  Score=88.83  Aligned_cols=75  Identities=12%  Similarity=0.026  Sum_probs=59.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS  190 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg  190 (313)
                      +.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++     . .++.++.+|+..++.  .+..||.+.|..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~--~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----H-PSVTFHHGTITDLSD--SPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----C-TTSEEECCCGGGGGG--SCCCEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----C-CCCeEEeCccccccc--CCCCeEEEEehh
Confidence            889999999999999999986   35899999999999999876     2 268999999987653  234455557777


Q ss_pred             cccccc
Q 021397          191 VLQEKD  196 (313)
Q Consensus       191 ~l~~~p  196 (313)
                      ++.+.+
T Consensus       111 ~l~~~~  116 (203)
T 3h2b_A          111 SLIHMG  116 (203)
T ss_dssp             SSTTCC
T ss_pred             hHhcCC
Confidence            665543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.84  E-value=1.2e-08  Score=89.75  Aligned_cols=83  Identities=12%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc-cc--ccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP-LR--LLL  183 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~-~D--~~l  183 (313)
                      .+.++.+|||+|||+|..+..+++...   +|+|+|+|+.+++.+++++   .. .+++++++|+..++... +|  ..+
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TA-ANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CC-TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cc-cCceEEECcccccccccccccccCc
Confidence            467889999999999999999998743   7999999999999999876   32 37999999998754321 11  124


Q ss_pred             Ccccccccccccc
Q 021397          184 DPGSCNSVLQEKD  196 (313)
Q Consensus       184 ~~~s~sg~l~~~p  196 (313)
                      +.+.+..++...+
T Consensus       126 d~v~~~~~~~~~~  138 (245)
T 3ggd_A          126 ANIYMRTGFHHIP  138 (245)
T ss_dssp             CEEEEESSSTTSC
T ss_pred             cEEEEcchhhcCC
Confidence            4445565554433

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.84  E-value=2.6e-08  Score=86.80  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..+++..   ..|+++|+|+.+++.+++++     . ++.++.+|+..++.   +..||.+.|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~---~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----P-DATLHQGDMRDFRL---GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----T-TCEEEECCTTTCCC---SSCEEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----C-CCEEEECCHHHccc---CCCCcEEEE
Confidence            578899999999999999999874   38999999999999998763     2 58899999987653   334554454


Q ss_pred             cc-cccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          189 NS-VLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       189 sg-~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +. ++.+.++.               ......+....+++           +|||.++.+++.
T Consensus       107 ~~~~~~~~~~~---------------~~~~~~l~~~~~~L-----------~pgG~l~~~~~~  143 (239)
T 3bxo_A          107 MFSSVGYLKTT---------------EELGAAVASFAEHL-----------EPGGVVVVEPWW  143 (239)
T ss_dssp             CTTGGGGCCSH---------------HHHHHHHHHHHHTE-----------EEEEEEEECCCC
T ss_pred             cCchHhhcCCH---------------HHHHHHHHHHHHhc-----------CCCeEEEEEecc
Confidence            33 44433221               01122333444455           459999999876

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.84  E-value=2.9e-09  Score=88.03  Aligned_cols=59  Identities=14%  Similarity=0.010  Sum_probs=53.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++.+|||+|||+|..+..+++..   ..|+|+|+|+.+++.++++++..++  +++++++|+..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~   99 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEV   99 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHH
Confidence            78899999999999999999862   3499999999999999999999987  69999999854

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.84  E-value=1.9e-08  Score=94.21  Aligned_cols=87  Identities=24%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC-CCcccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPL  179 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-~d~v~~  179 (313)
                      .+...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|+.. ++.   
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---  247 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV---  247 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC---
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC---
Confidence            345566777889999999999999999999865 469999999 99999999999999987789999999864 221   


Q ss_pred             ccccCcccccccccc
Q 021397          180 RLLLDPGSCNSVLQE  194 (313)
Q Consensus       180 D~~l~~~s~sg~l~~  194 (313)
                        .||.+.+..++++
T Consensus       248 --~~D~v~~~~vl~~  260 (374)
T 1qzz_A          248 --TADVVLLSFVLLN  260 (374)
T ss_dssp             --CEEEEEEESCGGG
T ss_pred             --CCCEEEEeccccC
Confidence              1444466666544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.83  E-value=5.9e-09  Score=93.56  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=56.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      .+.+|||+|||+|..+..+++.   ..+|+|+|+|+.|++.++++       .++.++++|+..+++  -|..||.+.|.
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~--~~~sfD~v~~~  106 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGL--PPASVDVAIAA  106 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCC--CSSCEEEEEEC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcc--cCCcccEEEEe
Confidence            4579999999999999999875   36899999999999876531       379999999988764  35566666777


Q ss_pred             ccc
Q 021397          190 SVL  192 (313)
Q Consensus       190 g~l  192 (313)
                      .++
T Consensus       107 ~~~  109 (257)
T 4hg2_A          107 QAM  109 (257)
T ss_dssp             SCC
T ss_pred             eeh
Confidence            766

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.83  E-value=7.9e-09  Score=91.98  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=59.4

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++++.      ++.++++|+..++.   +..||.+.|
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~---~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL---GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC---SCCEEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc---cCCcCEEEE
Confidence            46789999999999999999875   3589999999999999997642      58899999988764   445555566


Q ss_pred             cc-ccccc
Q 021397          189 NS-VLQEK  195 (313)
Q Consensus       189 sg-~l~~~  195 (313)
                      .+ ++.+.
T Consensus       117 ~~~~l~~~  124 (263)
T 3pfg_A          117 MFSSIGHL  124 (263)
T ss_dssp             CTTGGGGS
T ss_pred             cCchhhhc
Confidence            65 66543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.83  E-value=8.2e-09  Score=88.49  Aligned_cols=70  Identities=21%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC----Cccccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF----SLAPLR  180 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~----d~v~~D  180 (313)
                      .+.++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.++++++..++  +++++++|+..+    |.+..|
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~D~v~~~  119 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFNSRVDIVIMN  119 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCCCCCSEEEEC
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcCCCCCEEEEc
Confidence            4668899999999999999999886 2 35899999999999999999998887  699999998754    444445

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.81  E-value=7.3e-09  Score=85.89  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=73.8

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccccc
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL  183 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l  183 (313)
                      ..+.+.++.+|||+|||+|..+..+++..   ..|+++|+++.+++.++++     . .+++++.+| ..++    +..|
T Consensus        11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d-~~~~----~~~~   76 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----F-DSVITLSDP-KEIP----DNSV   76 (170)
T ss_dssp             HHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----C-TTSEEESSG-GGSC----TTCE
T ss_pred             HhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC-CCCC----CCce
Confidence            34557789999999999999999999864   4899999999999999987     2 378999998 3222    2344


Q ss_pred             CcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          184 DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       184 ~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |.+.+..++.+.++.                  ...+....+.+           +|||+++.++..
T Consensus        77 D~v~~~~~l~~~~~~------------------~~~l~~~~~~L-----------~pgG~l~~~~~~  114 (170)
T 3i9f_A           77 DFILFANSFHDMDDK------------------QHVISEVKRIL-----------KDDGRVIIIDWR  114 (170)
T ss_dssp             EEEEEESCSTTCSCH------------------HHHHHHHHHHE-----------EEEEEEEEEEEC
T ss_pred             EEEEEccchhcccCH------------------HHHHHHHHHhc-----------CCCCEEEEEEcC
Confidence            444666666544431                  11223334444           559999998776

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.81  E-value=1.1e-08  Score=94.83  Aligned_cols=67  Identities=18%  Similarity=0.262  Sum_probs=58.2

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +...++.+|||+|||+|..+..+++. + ..+|+|+|+| .+++.++++++..++.++++++.+|+..++
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  100 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH  100 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc
Confidence            34567899999999999999998875 3 3589999999 699999999999999778999999998764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.81  E-value=1.5e-08  Score=86.94  Aligned_cols=74  Identities=19%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+    + ...|+++|+|+.+++.+++++      .++.++.+|+..++.  .+..||.+.+.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~--~~~~fD~v~~~  102 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPF--PGESFDVVLLF  102 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCS--CSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCC--CCCcEEEEEEc
Confidence            7899999999999998877    2 238999999999999998775      268899999887653  23445555677


Q ss_pred             ccccccc
Q 021397          190 SVLQEKD  196 (313)
Q Consensus       190 g~l~~~p  196 (313)
                      .++.+.+
T Consensus       103 ~~l~~~~  109 (211)
T 2gs9_A          103 TTLEFVE  109 (211)
T ss_dssp             SCTTTCS
T ss_pred             ChhhhcC
Confidence            7665544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=87.44  Aligned_cols=121  Identities=14%  Similarity=0.021  Sum_probs=78.2

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      +.++.+|||+|||+|..+..+++.. . ..|+++|+|+.+++.+++++..  . .++.++.+|+..++.  .+..||.+.
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~--~~~~fD~v~  112 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGG-F-PNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDF--PSASFDVVL  112 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTT-C-CCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCS--CSSCEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCC--CCCcccEEE
Confidence            3678999999999999999999862 2 3899999999999999988754  2 368999999977643  123344445


Q ss_pred             cccccccccc-ccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          188 CNSVLQEKDD-TFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       188 ~sg~l~~~p~-~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +.+++..... .-..|.......    .....++....+++           +|||+++..+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L-----------kpgG~li~~~~~  161 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGV----HTVDQVLSEVSRVL-----------VPGGRFISMTSA  161 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHH----HHHHHHHHHHHHHE-----------EEEEEEEEEESC
T ss_pred             ECcchhhhccccccccccccchh----HHHHHHHHHHHHhC-----------cCCCEEEEEeCC
Confidence            5544422110 001343321111    11223334444555           459999999887

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.80  E-value=9.6e-09  Score=93.26  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhC---CCcEE--EEEcCCHHHHHHHHHHHHHc-CCCCcEEEE--ecCCCCCCc---
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIG---DSGSV--TGVDVARHRLAACRTLLQKY-ALGDRCRLF--VADGTTFSL---  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~---~~~~V--~avD~s~~~l~~~~~~~~~~-g~~~~v~~~--~~D~~~~d~---  176 (313)
                      +.++.+|||+|||+|..+..++..+.   ....|  +++|+|+.|++.++++++.. ++. ++.+.  .+|+..+..   
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhc
Confidence            45778999999999998876554331   23544  99999999999999988764 443 55553  444433220   


Q ss_pred             -cccccccCccccccccccccc
Q 021397          177 -APLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       177 -v~~D~~l~~~s~sg~l~~~p~  197 (313)
                       -..|..||.+.|..++++-+|
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d  150 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKD  150 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSC
T ss_pred             cccCCCceeEEEEeeeeeecCC
Confidence             012345666688888876665

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.80  E-value=2.7e-09  Score=95.60  Aligned_cols=86  Identities=14%  Similarity=0.022  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------------------
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------------------  160 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------------------  160 (313)
                      .+.+|.+|||+|||+|..+..++..  +...|+|+|+|+.+++.++++++....                          
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            4567899999999999887766543  224799999999999999988754320                          


Q ss_pred             --CCcEE-EEecCCCCCCc-c-ccccccCcccccccccc
Q 021397          161 --GDRCR-LFVADGTTFSL-A-PLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       161 --~~~v~-~~~~D~~~~d~-v-~~D~~l~~~s~sg~l~~  194 (313)
                        ..++. ++.+|+...+. . ..++.||.+.++.+++.
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~  168 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC  168 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHH
Confidence              01244 88899876421 1 12356777788877754

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.79  E-value=8.8e-08  Score=90.04  Aligned_cols=116  Identities=18%  Similarity=0.183  Sum_probs=84.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++|+++.+|+.. +..  + 
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p--~-  267 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIP--D-  267 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCC--S-
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCC--C-
Confidence            44456677889999999999999999999865 468999999 99999999999999987789999999862 111  1 


Q ss_pred             ccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          182 LLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .+|.+.+..+++..++.                ...+++.+..+++           +|||+|+.....
T Consensus       268 ~~D~v~~~~vlh~~~d~----------------~~~~~L~~~~~~L-----------~pgG~l~i~e~~  309 (369)
T 3gwz_A          268 GADVYLIKHVLHDWDDD----------------DVVRILRRIATAM-----------KPDSRLLVIDNL  309 (369)
T ss_dssp             SCSEEEEESCGGGSCHH----------------HHHHHHHHHHTTC-----------CTTCEEEEEEEB
T ss_pred             CceEEEhhhhhccCCHH----------------HHHHHHHHHHHHc-----------CCCCEEEEEEec
Confidence            34444666666443321                1123344455555           459998887765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.79  E-value=1.3e-08  Score=97.95  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +...+++.++++|||+|||+|..+..+++.   ...|+|+|+|+.+++.+++|++.+|+. +++++++|+..
T Consensus       278 ~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~  345 (433)
T 1uwv_A          278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEE  345 (433)
T ss_dssp             HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTS
T ss_pred             HHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHH
Confidence            344567788899999999999999999976   368999999999999999999999986 79999999865

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.79  E-value=2.9e-08  Score=89.70  Aligned_cols=110  Identities=16%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCc---ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc--------c
Q 021397          110 AGDHVLDLCAAP---GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA--------P  178 (313)
Q Consensus       110 ~g~~VLDlcagp---G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v--------~  178 (313)
                      +..+|||+|||+   |..+..+++..+ ..+|+++|+|+.|++.+++++..   .++++++.+|+...+.+        .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            447999999999   988766655543 47999999999999999988743   24799999999764321        1


Q ss_pred             cc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          179 LR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       179 ~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +| ..++.+.+.++++..++-  .              ...++....+.+           +|||+|+.++..
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~--~--------------~~~~l~~~~~~L-----------~pGG~l~i~~~~  198 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPD--V--------------VDRVVGAYRDAL-----------APGSYLFMTSLV  198 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTT--T--------------HHHHHHHHHHHS-----------CTTCEEEEEEEB
T ss_pred             CCCCCCEEEEEechhhhCCcH--H--------------HHHHHHHHHHhC-----------CCCcEEEEEEec
Confidence            23 244555677777655541  0              012233334444           559999998876

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.78  E-value=4.3e-08  Score=90.59  Aligned_cols=110  Identities=19%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-CCCccccccccCc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLDP  185 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-~~d~v~~D~~l~~  185 (313)
                      +..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++++...++.++++++.+|+. .++.     .+|.
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-----~~D~  238 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-----GAGG  238 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-----SCSE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-----CCcE
Confidence            4455789999999999999999998754 68999999 9999999999999998778999999985 2221     3444


Q ss_pred             ccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       186 ~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +.|..+++..++-                ...+++++..++++           |||+|+.....
T Consensus       239 v~~~~vlh~~~~~----------------~~~~~l~~~~~~L~-----------pgG~l~i~e~~  276 (332)
T 3i53_A          239 YVLSAVLHDWDDL----------------SAVAILRRCAEAAG-----------SGGVVLVIEAV  276 (332)
T ss_dssp             EEEESCGGGSCHH----------------HHHHHHHHHHHHHT-----------TTCEEEEEECC
T ss_pred             EEEehhhccCCHH----------------HHHHHHHHHHHhcC-----------CCCEEEEEeec
Confidence            4666666544331                11233444455554           59999887765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.78  E-value=5.2e-08  Score=92.41  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             ccccccCCeEEEecHH------HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC----------------------
Q 021397           83 TSMAYKQGKIYGIDAA------SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD----------------------  134 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~s------s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~----------------------  134 (313)
                      ....++.|+...|..+      +..+..+.+..++..|||.|||+|++++.++....+                      
T Consensus       162 G~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w  241 (385)
T 3ldu_A          162 GDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIW  241 (385)
T ss_dssp             CSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHH
T ss_pred             CChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHH
Confidence            3466777876665322      233445667788999999999999999999887532                      


Q ss_pred             ---------------CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          135 ---------------SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       135 ---------------~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                                     ...|+|+|+++.+++.+++|++.+|+.+++++.++|+..+
T Consensus       242 ~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l  296 (385)
T 3ldu_A          242 WDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQF  296 (385)
T ss_dssp             HHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGC
T ss_pred             HHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhc
Confidence                           1479999999999999999999999976899999998654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.78  E-value=7.6e-09  Score=90.93  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ++++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++         +.++.+|+..+...+.+..||.+.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEE
Confidence            567899999999999999999886   25799999999999988865         567888876541111234566667


Q ss_pred             ccccccccc
Q 021397          188 CNSVLQEKD  196 (313)
Q Consensus       188 ~sg~l~~~p  196 (313)
                      |.+++.+.+
T Consensus       107 ~~~~l~~~~  115 (240)
T 3dli_A          107 ISHFVEHLD  115 (240)
T ss_dssp             EESCGGGSC
T ss_pred             ECCchhhCC
Confidence            777776554

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.78  E-value=5.2e-08  Score=82.90  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++++.+|||+|||||+++..+++.+++ .++|+|+|+|+.+           .. .+++++++|+...+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~   76 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDN   76 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchh
Confidence            578899999999999999999998763 5799999999831           23 36899999987654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.78  E-value=9.2e-09  Score=94.12  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK--YAL-GDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--~g~-~~~v~~~~~D~~~  173 (313)
                      .+.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++..  .++ ..+++++.+|+..
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~  155 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE  155 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence            458999999999999999998643 47999999999999999999865  233 2479999999743

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.77  E-value=3.9e-09  Score=94.86  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCH-------HHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR-------HRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~-------~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      ..++..++.+.++.+|||+|||+|..++.+|+.   .++|+++|+|+       .+++.+++|++.+++.++++++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            445666666677899999999999999999985   36899999999       99999999998888765699999997


Q ss_pred             C-----------CCCcccccccc
Q 021397          172 T-----------TFSLAPLRLLL  183 (313)
Q Consensus       172 ~-----------~~d~v~~D~~l  183 (313)
                      .           .||.+.+||.|
T Consensus       149 ~~~l~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          149 AEQMPALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHhhhccCCCccEEEECCCC
Confidence            3           36666667654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.77  E-value=8.3e-08  Score=90.97  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=71.4

Q ss_pred             ccccccCCeEEEecHH------HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC----------------------
Q 021397           83 TSMAYKQGKIYGIDAA------SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD----------------------  134 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~s------s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~----------------------  134 (313)
                      ..+.++.||-..|..+      +..+..+.+.+++..+||.+||+|+..+.+|....+                      
T Consensus       161 g~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w  240 (384)
T 3ldg_A          161 GPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALV  240 (384)
T ss_dssp             SSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHH
T ss_pred             CCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHH
Confidence            3456777775544332      233445667888999999999999999998876543                      


Q ss_pred             ---------------CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          135 ---------------SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       135 ---------------~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                                     ...|+|+|+++.+++.+++|++.+|+.+++++.++|+..+
T Consensus       241 ~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l  295 (384)
T 3ldg_A          241 TRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDF  295 (384)
T ss_dssp             HHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGC
T ss_pred             HHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHC
Confidence                           1469999999999999999999999987799999998654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.77  E-value=2.2e-08  Score=90.90  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=63.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .....++..+++.++++|||+|||+|..|..+++.... .++|+|+|+++.+++.++++.     ..+++++++|+..++
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCC
Confidence            34455777888999999999999999999999998643 355999999999999999883     237999999998876


Q ss_pred             c
Q 021397          176 L  176 (313)
Q Consensus       176 ~  176 (313)
                      +
T Consensus       104 ~  104 (279)
T 3uzu_A          104 F  104 (279)
T ss_dssp             G
T ss_pred             h
Confidence            5

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.76  E-value=2.7e-08  Score=84.23  Aligned_cols=55  Identities=33%  Similarity=0.351  Sum_probs=44.8

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCC--------cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE-ecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDS--------GSVTGVDVARHRLAACRTLLQKYALGDRCRLF-VADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~--------~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~-~~D~~~~  174 (313)
                      ++++.+|||+|||+|..+..+++.++..        ++|+|+|+|+.+           .+. +++++ .+|+...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~-~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLE-GATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCT-TCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCC-CCeEEEeccCCCH
Confidence            6789999999999999999999997643        799999999842           233 68888 8887543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.76  E-value=8.2e-08  Score=89.51  Aligned_cols=86  Identities=21%  Similarity=0.176  Sum_probs=68.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC-CCccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLR  180 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-~d~v~~D  180 (313)
                      +...++..++.+|||+|||+|..+..+++..+ ...++++|+ +.+++.++++++..++.++++++.+|+.. ++.    
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----  248 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR----  248 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS----
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC----
Confidence            34556677889999999999999999999865 478999999 99999999999999987789999999864 221    


Q ss_pred             cccCcccccccccc
Q 021397          181 LLLDPGSCNSVLQE  194 (313)
Q Consensus       181 ~~l~~~s~sg~l~~  194 (313)
                       .+|.+.+..++++
T Consensus       249 -~~D~v~~~~vl~~  261 (360)
T 1tw3_A          249 -KADAIILSFVLLN  261 (360)
T ss_dssp             -CEEEEEEESCGGG
T ss_pred             -CccEEEEcccccC
Confidence             1444455655543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.76  E-value=9.6e-09  Score=91.07  Aligned_cols=51  Identities=18%  Similarity=0.107  Sum_probs=43.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      ..++.+|||+|||+|..+..+++.+ .....|+|+|+|+.+++.+++++...
T Consensus        49 ~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           49 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            3467899999999999999999873 12368999999999999999998776

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.76  E-value=1.9e-08  Score=90.25  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .....++..+++.++++|||+|||+|..|..+++.   .++|+|+|+++.+++.++++++.  . ++++++++|+..+++
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~-~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--Q-KNITIYQNDALQFDF   89 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--C-TTEEEEESCTTTCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--C-CCcEEEEcchHhCCH
Confidence            34556777889999999999999999999999975   26899999999999999998865  2 379999999988764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.75  E-value=4.7e-08  Score=88.55  Aligned_cols=63  Identities=16%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcC-CHHHHHHHHHHH-----HHcCCC----CcEEEEecCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV-ARHRLAACRTLL-----QKYALG----DRCRLFVADGT  172 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~-s~~~l~~~~~~~-----~~~g~~----~~v~~~~~D~~  172 (313)
                      ..+|.+|||+|||+|..+..+++. + ..+|+|+|+ |+.+++.+++|+     +..++.    +++++...|..
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~  149 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWG  149 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTT
T ss_pred             hcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCC
Confidence            457889999999999999988874 3 358999999 899999999999     556653    36778765543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.75  E-value=9.2e-09  Score=88.71  Aligned_cols=81  Identities=23%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc-cc-
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP-LR-  180 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~-~D-  180 (313)
                      ...+...++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++       .++.+...|+..++... .+ 
T Consensus        45 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~  114 (227)
T 3e8s_A           45 LLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVG  114 (227)
T ss_dssp             HHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCC
T ss_pred             HHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccC
Confidence            33444566799999999999999999876   36899999999999999876       24667888876552111 12 


Q ss_pred             cccCccccccccc
Q 021397          181 LLLDPGSCNSVLQ  193 (313)
Q Consensus       181 ~~l~~~s~sg~l~  193 (313)
                      ..||.+.|..++.
T Consensus       115 ~~fD~v~~~~~l~  127 (227)
T 3e8s_A          115 KDYDLICANFALL  127 (227)
T ss_dssp             CCEEEEEEESCCC
T ss_pred             CCccEEEECchhh
Confidence            3356667776665

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.74  E-value=3.8e-08  Score=96.00  Aligned_cols=69  Identities=16%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..+...++.+|||+|||+|..+..+++. + ..+|+|+|+|+ +++.++++++.+|+.++++++.+|+..++
T Consensus       152 ~~l~~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~  220 (480)
T 3b3j_A          152 QNHTDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS  220 (480)
T ss_dssp             HTGGGTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred             HhhhhcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc
Confidence            3445567899999999999999988873 3 36999999998 99999999999999778999999997754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.74  E-value=4.1e-08  Score=87.61  Aligned_cols=61  Identities=23%  Similarity=0.348  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ++++.+|||+|||+|..+..+++. +  .+|+|+|+++.+++.+++|++++++.  +++..+|+..
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~  178 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA  178 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh
Confidence            578899999999999999988874 3  39999999999999999999999874  8889888754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.73  E-value=3.3e-08  Score=85.37  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL  182 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~  182 (313)
                      ...+. .++.+|||+|||+|..+..+++. +  ..|+++|+|+.+++.++++.        ..++.+|+..+.....+..
T Consensus        26 ~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~   93 (230)
T 3cc8_A           26 LKHIK-KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ   93 (230)
T ss_dssp             HTTCC-TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred             HHHhc-cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence            34444 67899999999999999999886 3  79999999999999888643        2578888876433223345


Q ss_pred             cCccccccccccccc
Q 021397          183 LDPGSCNSVLQEKDD  197 (313)
Q Consensus       183 l~~~s~sg~l~~~p~  197 (313)
                      ||.+.+..++.+.++
T Consensus        94 fD~v~~~~~l~~~~~  108 (230)
T 3cc8_A           94 FDCVIFGDVLEHLFD  108 (230)
T ss_dssp             EEEEEEESCGGGSSC
T ss_pred             cCEEEECChhhhcCC
Confidence            565577776655543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.73  E-value=5.2e-08  Score=89.16  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |.....-...++..+++.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.++++++.  . ++++++++|+
T Consensus        32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~  105 (295)
T 3gru_A           32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDA  105 (295)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECch
Confidence            3333344556777888999999999999999999999987   36899999999999999999873  3 3799999999


Q ss_pred             CCCCc
Q 021397          172 TTFSL  176 (313)
Q Consensus       172 ~~~d~  176 (313)
                      ..++.
T Consensus       106 l~~~~  110 (295)
T 3gru_A          106 LKVDL  110 (295)
T ss_dssp             TTSCG
T ss_pred             hhCCc
Confidence            87653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.73  E-value=3.1e-08  Score=95.15  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.++++|||+|||+|..+..+|+.   ...|+|+|+|+.+++.+++|++.+|+.  ++++.+|+..+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~  349 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREV  349 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTC
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHc
Confidence            577899999999999999999985   358999999999999999999999984  99999998754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.72  E-value=2.7e-08  Score=88.39  Aligned_cols=79  Identities=10%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..+......++..+++.++++|||+|||+|..|..+++..   ++|+|+|+|+.+++.++++++..   ++++++++|+
T Consensus        12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~   85 (244)
T 1qam_A           12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDI   85 (244)
T ss_dssp             BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCG
T ss_pred             ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChH
Confidence            44555566677788888899999999999999999999873   68999999999999999887542   3799999999


Q ss_pred             CCCCc
Q 021397          172 TTFSL  176 (313)
Q Consensus       172 ~~~d~  176 (313)
                      ..++.
T Consensus        86 ~~~~~   90 (244)
T 1qam_A           86 LQFKF   90 (244)
T ss_dssp             GGCCC
T ss_pred             HhCCc
Confidence            87654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.72  E-value=6.3e-08  Score=90.02  Aligned_cols=117  Identities=19%  Similarity=0.120  Sum_probs=83.4

Q ss_pred             HhcCCCC-CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397          104 SALNISA-GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL  182 (313)
Q Consensus       104 ~~l~~~~-g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~  182 (313)
                      ..++..+ +.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++++.+.++.++++++.+|+...+.. .+..
T Consensus       172 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~  248 (352)
T 3mcz_A          172 SELGVFARARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-EGGA  248 (352)
T ss_dssp             HTCGGGTTCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-TTCC
T ss_pred             HhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-CCCC
Confidence            3445556 889999999999999999998764 79999999 889999999999999877899999998765410 1222


Q ss_pred             cCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          183 LDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       183 l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      +|.+.+..+++..++-                ...+++.+..++++           |||+++.....
T Consensus       249 ~D~v~~~~vlh~~~~~----------------~~~~~l~~~~~~L~-----------pgG~l~i~e~~  289 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAR----------------EAREVIGHAAGLVK-----------PGGALLILTMT  289 (352)
T ss_dssp             EEEEEEESCGGGSCHH----------------HHHHHHHHHHHTEE-----------EEEEEEEEEEC
T ss_pred             ccEEEEecccccCCHH----------------HHHHHHHHHHHHcC-----------CCCEEEEEEec
Confidence            4444666666543321                01233344455554           59998887765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.71  E-value=3.3e-08  Score=82.65  Aligned_cols=64  Identities=20%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             cHHHHHHHHhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           96 DAASGAAVSALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        96 d~ss~~~~~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+.+..++..++.  .++.+|||+|||+|..+..+++..    .|+|+|+|+.+++.          .++++++++|+..
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----------~~~~~~~~~d~~~   72 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----------HRGGNLVRADLLC   72 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----------CSSSCEEECSTTT
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----------ccCCeEEECChhh
Confidence            4455555555655  678899999999999999998752    89999999999987          2368899999864

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.71  E-value=2e-08  Score=95.82  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CCCCcEEEEecCCC---------CCCcc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--ALGDRCRLFVADGT---------TFSLA  177 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~~~~v~~~~~D~~---------~~d~v  177 (313)
                      .+|.+|||+|||+|..++.+++.   ..+|+++|+|+.+++.+++|++.+  |+ ++++++++|+.         .||.+
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEE
Confidence            35899999999999999999875   369999999999999999999999  88 48999999985         46777


Q ss_pred             ccccccC
Q 021397          178 PLRLLLD  184 (313)
Q Consensus       178 ~~D~~l~  184 (313)
                      ++||-+.
T Consensus       168 ~lDPPrr  174 (410)
T 3ll7_A          168 YVDPARR  174 (410)
T ss_dssp             EECCEEC
T ss_pred             EECCCCc
Confidence            7786543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.71  E-value=3.6e-08  Score=91.03  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+...++..+ .+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++++.+.++.++++++.+|+.. +.   .
T Consensus       159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~  231 (334)
T 2ip2_A          159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV---P  231 (334)
T ss_dssp             HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC---C
T ss_pred             HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC---C
Confidence            3444556666 89999999999999999998753 69999999 99999999999888876689999999865 21   1


Q ss_pred             cccCcccccccccc
Q 021397          181 LLLDPGSCNSVLQE  194 (313)
Q Consensus       181 ~~l~~~s~sg~l~~  194 (313)
                      ..+|.+.+..++++
T Consensus       232 ~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          232 SNGDIYLLSRIIGD  245 (334)
T ss_dssp             SSCSEEEEESCGGG
T ss_pred             CCCCEEEEchhccC
Confidence            23444466665543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.71  E-value=1.4e-07  Score=89.57  Aligned_cols=91  Identities=14%  Similarity=0.066  Sum_probs=71.0

Q ss_pred             cccccCCeEEEec------HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC-----------------------
Q 021397           84 SMAYKQGKIYGID------AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD-----------------------  134 (313)
Q Consensus        84 ~~~~~~G~~~~Qd------~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~-----------------------  134 (313)
                      .+.++.||-..|.      .-+..+..+.+.+++..|||.|||+|+.++.+|....+                       
T Consensus       169 ~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~  248 (393)
T 3k0b_A          169 AGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWA  248 (393)
T ss_dssp             SCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHH
T ss_pred             CcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHH
Confidence            3456666643332      22333456677888999999999999999998886543                       


Q ss_pred             --------------CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          135 --------------SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       135 --------------~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                                    ...|+|+|+++.+++.+++|++.+|+.++++++++|+..+
T Consensus       249 ~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~  302 (393)
T 3k0b_A          249 DARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF  302 (393)
T ss_dssp             HHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGC
T ss_pred             HHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhC
Confidence                          1469999999999999999999999977799999998654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.70  E-value=5.4e-08  Score=91.91  Aligned_cols=65  Identities=23%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .+|..|||+|||+|..+..+|+. + ..+|+|+|.|+ +++.++++++.+|+.++|+++.+|++.++.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l  146 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL  146 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC
Confidence            37899999999999999877764 3 35899999996 889999999999998899999999987653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.68  E-value=1.4e-07  Score=88.45  Aligned_cols=81  Identities=16%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC--ccccccccCcc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS--LAPLRLLLDPG  186 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d--~v~~D~~l~~~  186 (313)
                      ..+.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++++..++.++++++.+|+....  +.   ..+|.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p---~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP---TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC---CCCSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC---CCcCEE
Confidence            45689999999999999999998754 69999999 9999999999998888678999999987642  21   123434


Q ss_pred             cccccccc
Q 021397          187 SCNSVLQE  194 (313)
Q Consensus       187 s~sg~l~~  194 (313)
                      .+..+++.
T Consensus       253 ~~~~vlh~  260 (363)
T 3dp7_A          253 WMSQFLDC  260 (363)
T ss_dssp             EEESCSTT
T ss_pred             EEechhhh
Confidence            55555543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.65  E-value=8.1e-08  Score=83.75  Aligned_cols=59  Identities=12%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-CCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-~~d  175 (313)
                      +.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++     . .+++++++|+. .++
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELP  105 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccC
Confidence            367899999999999999999986   36999999999999999987     2 26899999984 443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.65  E-value=1.5e-07  Score=78.82  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      +.++.+|||+|||+|..+..+++.   ...|+++|+++.+++.+++++     . ++.++.+|+..++..  +..||.+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~-~~~~~~~d~~~~~~~--~~~~D~i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----P-EARWVVGDLSVDQIS--ETDFDLIV  112 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTTSCCC--CCCEEEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----C-CCcEEEcccccCCCC--CCceeEEE
Confidence            468899999999999999999986   368999999999999998765     2 578999998775431  23344445


Q ss_pred             cc
Q 021397          188 CN  189 (313)
Q Consensus       188 ~s  189 (313)
                      +.
T Consensus       113 ~~  114 (195)
T 3cgg_A          113 SA  114 (195)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.63  E-value=1.1e-07  Score=84.68  Aligned_cols=71  Identities=15%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++.   ...|+++|+|+.+++.++++..     .+  ++.+|+..++.  .+..||.+.+.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~--~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPF--PSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCS--CTTCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCC--CCCCEEEEEEc
Confidence            7889999999999999999875   3689999999999999987643     12  78888877653  23344444555


Q ss_pred             ccc
Q 021397          190 SVL  192 (313)
Q Consensus       190 g~l  192 (313)
                      +.+
T Consensus       122 ~~~  124 (260)
T 2avn_A          122 GDV  124 (260)
T ss_dssp             SSH
T ss_pred             chh
Confidence            543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.63  E-value=9.4e-08  Score=78.62  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=47.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++++.+|||+|||+|..+..+++.++....|+++|+++ +++.           .+++++.+|+...+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~   75 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDEL   75 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccch
Confidence            67899999999999999999999876557999999999 6532           36899999987643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.62  E-value=1.7e-08  Score=96.00  Aligned_cols=84  Identities=20%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ..|.++--+.-+..++..+.+.++.+|||+|||+|+.+..+++..+....|+|+|+++.+++.+          .++.++
T Consensus        17 ~~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~   86 (421)
T 2ih2_A           17 SLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGI   86 (421)
T ss_dssp             ----CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEE
T ss_pred             cCceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEE
Confidence            3466666666677778888776778999999999999999999875457999999999998766          268999


Q ss_pred             ecCCCC------CCcccccc
Q 021397          168 VADGTT------FSLAPLRL  181 (313)
Q Consensus       168 ~~D~~~------~d~v~~D~  181 (313)
                      ++|+..      ||.+..+|
T Consensus        87 ~~D~~~~~~~~~fD~Ii~NP  106 (421)
T 2ih2_A           87 LADFLLWEPGEAFDLILGNP  106 (421)
T ss_dssp             ESCGGGCCCSSCEEEEEECC
T ss_pred             eCChhhcCccCCCCEEEECc
Confidence            999854      45555553

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.62  E-value=6.1e-08  Score=87.60  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=62.1

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +......++..+++.++ +|||+|||+|..|..+++..   ++|+|+|+++.+++.+++++.  +  .+++++++|+..+
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~--~--~~v~vi~~D~l~~  103 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS--G--LPVRLVFQDALLY  103 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT--T--SSEEEEESCGGGS
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC--C--CCEEEEECChhhC
Confidence            33445567788889999 99999999999999999862   689999999999999998875  2  3799999999876


Q ss_pred             Cc
Q 021397          175 SL  176 (313)
Q Consensus       175 d~  176 (313)
                      +.
T Consensus       104 ~~  105 (271)
T 3fut_A          104 PW  105 (271)
T ss_dssp             CG
T ss_pred             Ch
Confidence            54

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.60  E-value=1.6e-08  Score=89.68  Aligned_cols=85  Identities=13%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------------------
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------------------  160 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------------------  160 (313)
                      ...++.+|||+|||+|..+..+++.. . ..|+|+|+|+.+++.++++++..+.                          
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            34678899999999999999888642 1 4899999999999999988765431                          


Q ss_pred             --CCcE-EEEecCCCCCCcc-ccc-cccCccccccccc
Q 021397          161 --GDRC-RLFVADGTTFSLA-PLR-LLLDPGSCNSVLQ  193 (313)
Q Consensus       161 --~~~v-~~~~~D~~~~d~v-~~D-~~l~~~s~sg~l~  193 (313)
                        ..++ .++.+|+...+.. ... ..||.+.|..++.
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence              0127 8999998775431 111 3455556666654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.60  E-value=4.8e-08  Score=83.32  Aligned_cols=61  Identities=23%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .+.++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.++++++      +++++++|+..++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~  108 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS  108 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC
Confidence            4667899999999999999999876 3 3579999999999999998864      5789999987643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.59  E-value=1.2e-07  Score=91.57  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=75.7

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC------------CCcEEEEEcCCHHHHHHHHHHH
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG------------DSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~------------~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      ..|.++--..-+.+++..+.++++.+|||.|||+|++...+++.+.            ....++|+|+++.+++.++.|+
T Consensus       149 ~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          149 GAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             CCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            3466665566677788889999999999999999999999988752            1257999999999999999999


Q ss_pred             HHcCCCC-cEEEEecCCCC------CCcccccccc
Q 021397          156 QKYALGD-RCRLFVADGTT------FSLAPLRLLL  183 (313)
Q Consensus       156 ~~~g~~~-~v~~~~~D~~~------~d~v~~D~~l  183 (313)
                      ..+|+.. ++.+.++|+..      ||+++.+|.|
T Consensus       229 ~l~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf  263 (445)
T 2okc_A          229 YLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPF  263 (445)
T ss_dssp             HHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCS
T ss_pred             HHhCCCcCCCCEeeCCCCCCcccCCcCEEEECCCC
Confidence            9888742 47789999753      5556666443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.58  E-value=4.8e-08  Score=87.69  Aligned_cols=82  Identities=20%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             HHHHHHhcCCCCC--CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--------CCCcEEEEe
Q 021397           99 SGAAVSALNISAG--DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--------LGDRCRLFV  168 (313)
Q Consensus        99 s~~~~~~l~~~~g--~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--------~~~~v~~~~  168 (313)
                      ...+..++.+++|  .+|||+|||.|..++.+|+. +  ++|+++|+++.+.+.+++++++..        +.+++++++
T Consensus        75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            4556677888888  99999999999999999987 2  579999999999888888876542        323799999


Q ss_pred             cCCC--------CCCcccccccc
Q 021397          169 ADGT--------TFSLAPLRLLL  183 (313)
Q Consensus       169 ~D~~--------~~d~v~~D~~l  183 (313)
                      +|+.        .||.+.+||-|
T Consensus       152 ~D~~~~L~~~~~~fDvV~lDP~y  174 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYLDPMF  174 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCC
T ss_pred             CCHHHHHHhCcccCCEEEEcCCC
Confidence            9973        36666777654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.56  E-value=7.8e-08  Score=85.82  Aligned_cols=78  Identities=14%  Similarity=0.269  Sum_probs=63.4

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |.....-...++..+++.++++|||+|||+|..|..+++. + ..+|+|+|+++.+++.++++    +. .+++++++|+
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~~-~~v~~i~~D~   85 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----GD-ERLEVINEDA   85 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----CC-TTEEEECSCT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----cC-CCeEEEEcch
Confidence            3333444556777888999999999999999999999875 2 36999999999999999876    22 3799999999


Q ss_pred             CCCCc
Q 021397          172 TTFSL  176 (313)
Q Consensus       172 ~~~d~  176 (313)
                      ..+++
T Consensus        86 ~~~~~   90 (249)
T 3ftd_A           86 SKFPF   90 (249)
T ss_dssp             TTCCG
T ss_pred             hhCCh
Confidence            87764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.56  E-value=1.2e-07  Score=85.73  Aligned_cols=64  Identities=20%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             CCEEEEECCCc--ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          111 GDHVLDLCAAP--GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       111 g~~VLDlcagp--G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      -.+|||+|||+  |+.+..+++...+..+|+++|.|+.|++.+++++...+. .+++++++|++.++
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~  144 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPA  144 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHH
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChh
Confidence            36899999997  667777877665568999999999999999988765433 37999999998753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.56  E-value=1.1e-07  Score=81.35  Aligned_cols=57  Identities=12%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL  166 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~  166 (313)
                      .+.++|||+|||+|..++.++...+. .+|+|+|+|+.|++.+++++++.|..+++++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~-a~~~A~Di~~~~leiar~~~~~~g~~~~v~~  104 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEK-IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF  104 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCC-CEEEEECSCHHHHHHHHHHHHHSCCSSEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCccEEE
Confidence            45789999999999999999877654 5999999999999999999999998756766

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.55  E-value=9.9e-08  Score=86.51  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--------CCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL--------GDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~--------~~~v~~~~~D~~~  173 (313)
                      .++.+|||+|||+|+.+..+++. + ..+|+++|+++.+++.+++++ +.  ++        ..+++++.+|+..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~  145 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE  145 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH
Confidence            45689999999999999999987 4 479999999999999999988 44  32        3479999999743

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.55  E-value=1.5e-07  Score=83.95  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=51.2

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .++.+|||+|||+|..+..+++.++ ...|+++|+|+.+++.++++.      .++.++.+|+..++
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~  143 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP  143 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCC
Confidence            5789999999999999999998764 368999999999999988653      25789999987765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.54  E-value=9e-08  Score=85.59  Aligned_cols=74  Identities=18%  Similarity=0.174  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .-...++..+++.+|++|||+|||+|..|. ++.  ....+|+|+|+++.+++.++++++..   ++++++++|+..+++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence            334556677888999999999999999999 653  22233999999999999999876543   379999999987664

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.53  E-value=1.5e-08  Score=93.10  Aligned_cols=61  Identities=16%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcC----CHHHHHHHHHHHHHcCCCCcEEEEec-CCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV----ARHRLAACRTLLQKYALGDRCRLFVA-DGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~----s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~~~d  175 (313)
                      +++|.+|||+|||||++|..+++.    +.|+|+|+    ++.+++.+.  .+..+. +++.++.+ |+..++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC
Confidence            568899999999999999999975    57999999    565442211  122232 36899999 887654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.52  E-value=1.1e-07  Score=86.04  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  156 (313)
                      .++.+|||+|||+|..+..++.. . ...|+|+|+|+.|++.++++++
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHh
Confidence            37889999999999954433332 2 3589999999999999988654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.51  E-value=3.2e-07  Score=83.03  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             CCCEEEEECCCcCh----HHHHHHHHhCC---CcEEEEEcCCHHHHHHHHHHHH--------------Hc---------C
Q 021397          110 AGDHVLDLCAAPGA----KLCMILDIIGD---SGSVTGVDVARHRLAACRTLLQ--------------KY---------A  159 (313)
Q Consensus       110 ~g~~VLDlcagpG~----kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~--------------~~---------g  159 (313)
                      ++.+|||+|||+|-    .+..+++..+.   ..+|+|+|+|+.+++.|++++-              ++         |
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    56667776553   2489999999999999998741              11         0


Q ss_pred             ---C----CCcEEEEecCCCCCCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCc
Q 021397          160 ---L----GDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP  232 (313)
Q Consensus       160 ---~----~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~  232 (313)
                         +    ..+|.+.++|....++. .+..||.+.|..++...++                ..|.+++....+.+     
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~----------------~~~~~vl~~~~~~L-----  242 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDK----------------TTQEDILRRFVPLL-----  242 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCH----------------HHHHHHHHHHGGGE-----
T ss_pred             ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCH----------------HHHHHHHHHHHHHh-----
Confidence               0    12589999998764321 1234666678665532221                12344445555555     


Q ss_pred             ceeEeecCCcEEEEEcC
Q 021397          233 ELIFYGRRSGIVGLTKE  249 (313)
Q Consensus       233 El~~~~k~gG~lvysTc  249 (313)
                            +|||.|+....
T Consensus       243 ------~pgG~L~lg~s  253 (274)
T 1af7_A          243 ------KPDGLLFAGHS  253 (274)
T ss_dssp             ------EEEEEEEECTT
T ss_pred             ------CCCcEEEEEec
Confidence                  45999987544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.51  E-value=2.7e-07  Score=83.37  Aligned_cols=63  Identities=24%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~D~~~  173 (313)
                      .+.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++...  ++ .++++++.+|+..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~  140 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM  140 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence            468999999999999999987533 469999999999999999988653  33 3479999999853

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.50  E-value=3.1e-07  Score=90.83  Aligned_cols=96  Identities=7%  Similarity=0.006  Sum_probs=74.9

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC-----------------cEEEEEcCCHHHHHH
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-----------------GSVTGVDVARHRLAA  150 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~-----------------~~V~avD~s~~~l~~  150 (313)
                      ..|.||--+.-+.+++.++.++++.+|||.|||+|++...+++.+...                 ..++|+|+++.+++.
T Consensus       147 ~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l  226 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  226 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             cCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence            347676666667778889999999999999999999999998876321                 379999999999999


Q ss_pred             HHHHHHHcCCCC----cEEEEecCCC--------CCCcccccccc
Q 021397          151 CRTLLQKYALGD----RCRLFVADGT--------TFSLAPLRLLL  183 (313)
Q Consensus       151 ~~~~~~~~g~~~----~v~~~~~D~~--------~~d~v~~D~~l  183 (313)
                      ++.|+..+|+..    ++.+.++|+.        .||+|+.+|.|
T Consensus       227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf  271 (541)
T 2ar0_A          227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF  271 (541)
T ss_dssp             HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCC
T ss_pred             HHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCc
Confidence            999998888752    1778899873        36666677543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.50  E-value=1.4e-08  Score=91.49  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=45.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH---HHcCCCCcEEEE--ecCCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL---QKYALGDRCRLF--VADGTTFS  175 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~---~~~g~~~~v~~~--~~D~~~~d  175 (313)
                      .+++|.+|||+|||||++|..+++.    +.|+|+|+++ ++..++++.   +.++  .++.++  ++|+..++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~--~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG--WNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT--GGGEEEECSCCTTTSC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC--CCeEEEecccCHhHCC
Confidence            3678999999999999999999875    6799999998 432222110   0111  168888  89998765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.50  E-value=2.1e-07  Score=86.57  Aligned_cols=65  Identities=14%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~D~~~  173 (313)
                      ..++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++.+.  ++ ..+++++.+|+..
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~  185 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA  185 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH
Confidence            44568999999999999999997643 469999999999999999998764  44 2479999999754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.49  E-value=7e-08  Score=95.99  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      .+.+|||+|||.|..+..||++   +..|+|+|+++.+++.|+..+...|.. +|++.++|+..+....-+..||.+.|.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEEC
Confidence            5679999999999999999985   368999999999999999998888743 699999998765321123457777999


Q ss_pred             cccccccc
Q 021397          190 SVLQEKDD  197 (313)
Q Consensus       190 g~l~~~p~  197 (313)
                      +++.+-++
T Consensus       142 e~~ehv~~  149 (569)
T 4azs_A          142 SVFHHIVH  149 (569)
T ss_dssp             SCHHHHHH
T ss_pred             cchhcCCC
Confidence            99987665

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.49  E-value=1.4e-07  Score=86.51  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=53.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc---CCCCcEEEEecCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY---ALGDRCRLFVADGTTF  174 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~~~~v~~~~~D~~~~  174 (313)
                      ..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...   ....+++++.+|+..+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~  161 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAF  161 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH
Confidence            3567899999999999999998753 3469999999999999999987432   1224799999998543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.49  E-value=1.8e-07  Score=85.92  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK--YAL-GDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--~g~-~~~v~~~~~D~~~  173 (313)
                      ..++.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++..  .++ ..+++++.+|+..
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~  160 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE  160 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence            34568999999999999999987633 47999999999999999999876  233 3479999999853

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.47  E-value=4.1e-08  Score=86.69  Aligned_cols=43  Identities=26%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  154 (313)
                      +|.+|||+|||+|+.+..+++. + ..+|+|+|+|+.|++.++++
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHT
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHh
Confidence            4779999999999999999986 3 25999999999999987654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.47  E-value=1.3e-08  Score=90.19  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397           92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG  171 (313)
Q Consensus        92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~  171 (313)
                      |..+......++..+++.++++|||+|||+|..|..+++..   ++|+|+|+|+.+++.++++++  +. ++++++++|+
T Consensus        11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~-~~v~~~~~D~   84 (245)
T 1yub_A           11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LN-TRVTLIHQDI   84 (245)
T ss_dssp             BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TC-SEEEECCSCC
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cC-CceEEEECCh
Confidence            45566667778888889999999999999999999999872   689999999999999988765  22 4799999999


Q ss_pred             CCCCc
Q 021397          172 TTFSL  176 (313)
Q Consensus       172 ~~~d~  176 (313)
                      ..++.
T Consensus        85 ~~~~~   89 (245)
T 1yub_A           85 LQFQF   89 (245)
T ss_dssp             TTTTC
T ss_pred             hhcCc
Confidence            87663

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.47  E-value=2.6e-08  Score=90.32  Aligned_cols=64  Identities=16%  Similarity=0.044  Sum_probs=45.2

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH-HHcCCCCcEEEE--ecCCCCCC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL-QKYALGDRCRLF--VADGTTFS  175 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~-~~~g~~~~v~~~--~~D~~~~d  175 (313)
                      .+++|.+|||+|||||++|..+++.    +.|+|+|+++ ++..++++. .......++.++  ++|+..++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  145 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME  145 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence            3578999999999999999999875    5799999998 543322110 000111168888  89988765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.46  E-value=3.5e-07  Score=85.08  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-CCCccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLR  180 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-~~d~v~~D  180 (313)
                      +...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.++.  ++++++.++.++++++.+|+. .++     
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p-----  246 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP-----  246 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC-----
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC-----
Confidence            44556777889999999999999999999875 478999999 44444  444444556568999999985 222     


Q ss_pred             cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                       .+|.+.+..+++..++.                ...+++++..+++           ||||+|+..+..
T Consensus       247 -~~D~v~~~~vlh~~~d~----------------~~~~~L~~~~~~L-----------kpgG~l~i~e~~  288 (348)
T 3lst_A          247 -HADVHVLKRILHNWGDE----------------DSVRILTNCRRVM-----------PAHGRVLVIDAV  288 (348)
T ss_dssp             -CCSEEEEESCGGGSCHH----------------HHHHHHHHHHHTC-----------CTTCEEEEEECC
T ss_pred             -CCcEEEEehhccCCCHH----------------HHHHHHHHHHHhc-----------CCCCEEEEEEec
Confidence             34444666666544331                0122334445555           459999887765

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.46  E-value=1.3e-07  Score=86.29  Aligned_cols=46  Identities=24%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             hcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397          105 ALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus       105 ~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      .+.+. +|.+|||+|||||++|..+++.  +.++|+|+|+|+.|++.+.
T Consensus        79 ~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~  125 (291)
T 3hp7_A           79 VFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKL  125 (291)
T ss_dssp             HTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHH
T ss_pred             hcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHH
Confidence            33444 5789999999999999999885  3469999999999998743

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.45  E-value=2e-07  Score=86.19  Aligned_cols=64  Identities=9%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~D~~~  173 (313)
                      .++.+|||+|||+|+.+..+++..+ ..+|+++|+|+.+++.+++++...  ++ ..+++++.+|+..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~  181 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK  181 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH
Confidence            4568999999999999999987543 479999999999999999998662  23 2479999999743

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.45  E-value=2.5e-07  Score=80.10  Aligned_cols=70  Identities=10%  Similarity=0.032  Sum_probs=52.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++.       +++|+|+.+++.++++        ++.++.+|+..++.  .+..||.+.+.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--~~~~fD~v~~~  109 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENLPL--KDESFDFALMV  109 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBCCS--CTTCEEEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccCCC--CCCCeeEEEEc
Confidence            3889999999999999877632       9999999999998876        46788999877653  13345555666


Q ss_pred             ccccccc
Q 021397          190 SVLQEKD  196 (313)
Q Consensus       190 g~l~~~p  196 (313)
                      .++.+.+
T Consensus       110 ~~l~~~~  116 (219)
T 1vlm_A          110 TTICFVD  116 (219)
T ss_dssp             SCGGGSS
T ss_pred             chHhhcc
Confidence            6665544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.44  E-value=3.9e-07  Score=82.68  Aligned_cols=65  Identities=9%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~~  173 (313)
                      ..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+  + ..+++++.+|+..
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~  143 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK  143 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH
Confidence            3456899999999999999998753 34699999999999999999876542  1 2479999999854

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.43  E-value=2.1e-07  Score=85.77  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~D~~~  173 (313)
                      .++.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++...  ++ ..+++++.+|+..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~  173 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE  173 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH
Confidence            3457999999999999999987643 479999999999999999988654  33 3479999999854

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.41  E-value=8.9e-07  Score=76.42  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--CCcEEEEecCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--GDRCRLFVADGTT  173 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~~~v~~~~~D~~~  173 (313)
                      .....++...  +++..+||++||  |+.|+.+|+. . .++|+++|.++++.+.+++++++.|+  .++|+++.+|+..
T Consensus        18 ~~~~~~L~~~--l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           18 PAEAEALRMA--YEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HHHHHHHHHH--HHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             HHHHHHHHHH--hhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            3344444333  246789999997  6888888874 3 58999999999999999999999998  7799999999643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.40  E-value=1.4e-06  Score=88.63  Aligned_cols=92  Identities=17%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             ccccccCCeEEEec------HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC-----------------------
Q 021397           83 TSMAYKQGKIYGID------AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG-----------------------  133 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd------~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~-----------------------  133 (313)
                      ..+.++.||-..+.      .-+..++.+.+.+++..|||.|||+|+..+.+|....                       
T Consensus       157 g~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~  236 (703)
T 3v97_A          157 GDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAI  236 (703)
T ss_dssp             SSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHH
T ss_pred             CCccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHH
Confidence            34556666543332      1233344566778899999999999999998887641                       


Q ss_pred             ------------------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          134 ------------------DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       134 ------------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                                        ....|+|+|+++.+++.+++|++++|+.+.+++.++|+..+
T Consensus       237 w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~  295 (703)
T 3v97_A          237 WQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQL  295 (703)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence                              12579999999999999999999999987799999998654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.40  E-value=2.3e-08  Score=88.69  Aligned_cols=130  Identities=12%  Similarity=0.049  Sum_probs=76.5

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHH--hCC-CcEEEEEcC--CHHHHHHHHHHHHHcCCCCcEEEEec-CCCC-----CCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDI--IGD-SGSVTGVDV--ARHRLAACRTLLQKYALGDRCRLFVA-DGTT-----FSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~--~~~-~~~V~avD~--s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~~-----~d~  176 (313)
                      ++||++|+|+|||||+|+..++++  ++. .|.|+|+|+  .+-..       ...|. +-+.+..+ |...     +|.
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~G~Df~~~~~~~~Dv  142 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKSGVDVFYKPSEISDT  142 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEECSCCGGGSCCCCCSE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeeccCCccCCCCCCCCE
Confidence            688999999999999999999987  432 467778773  22100       00222 12355556 7753     555


Q ss_pred             cccc--cccC----cc--------cccccccccc-c-ccccccccchhHHH----HHHHHHHHHHhhhhhccccCcceeE
Q 021397          177 APLR--LLLD----PG--------SCNSVLQEKD-D-TFREWTSRIPWKER----KRAVKARENAASKAIVRSEHPELIF  236 (313)
Q Consensus       177 v~~D--~~l~----~~--------s~sg~l~~~p-~-~~~~w~~~~~~~~~----~~~~q~~~l~~~~~~~r~~~~El~~  236 (313)
                      ++.|  |.--    |.        .+.-.+.+.+ + +.|.|++.......    .++.|...+. .+.++|++|+|+|+
T Consensus       143 VLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vkv-k~paSR~~S~E~Yl  221 (269)
T 2px2_A          143 LLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLV-RVPLSRNSNHEMYW  221 (269)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEE-CCTTSCTTCCCEEE
T ss_pred             EEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEEE-ECCCCCCCCccEEE
Confidence            6666  3200    00        0112344455 3 56778753343322    2444444443 44599999999999


Q ss_pred             eecCCcEEEE
Q 021397          237 YGRRSGIVGL  246 (313)
Q Consensus       237 ~~k~gG~lvy  246 (313)
                      +++..|-++-
T Consensus       222 Va~~~~n~~~  231 (269)
T 2px2_A          222 VSGASGNIVH  231 (269)
T ss_dssp             ETTCCSCHHH
T ss_pred             EecccCcHHH
Confidence            9887665443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.37  E-value=7.2e-07  Score=82.12  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--C-C-CCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--A-L-GDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g-~-~~~v~~~~~D~~~  173 (313)
                      .++.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++...  + + ..+++++.+|+..
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~  143 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA  143 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH
Confidence            3568999999999999999988643 468999999999999999998752  2 2 2479999999854

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.37  E-value=2.7e-06  Score=79.49  Aligned_cols=115  Identities=13%  Similarity=0.030  Sum_probs=77.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +...++..+..+|+|+|||+|..+..+++..++ .+++..|. +..++.+++++...+ .++|+++.+|+..-+..    
T Consensus       171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~----  243 (353)
T 4a6d_A          171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLP----  243 (353)
T ss_dssp             HHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCC----
T ss_pred             HHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCC----
Confidence            445556677889999999999999999999864 68888997 889999998876555 45899999998543322    


Q ss_pred             ccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          182 LLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      ..|.+.+..+++..++-       .         -.++|++..++++           |||+|+....-
T Consensus       244 ~~D~~~~~~vlh~~~d~-------~---------~~~iL~~~~~al~-----------pgg~lli~e~~  285 (353)
T 4a6d_A          244 EADLYILARVLHDWADG-------K---------CSHLLERIYHTCK-----------PGGGILVIESL  285 (353)
T ss_dssp             CCSEEEEESSGGGSCHH-------H---------HHHHHHHHHHHCC-----------TTCEEEEEECC
T ss_pred             CceEEEeeeecccCCHH-------H---------HHHHHHHHHhhCC-----------CCCEEEEEEee
Confidence            22333455555443321       1         1233445555554           49988777665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.36  E-value=2.2e-08  Score=90.02  Aligned_cols=131  Identities=11%  Similarity=0.026  Sum_probs=76.6

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec--CC-----CCCCcccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DG-----TTFSLAPL  179 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~--D~-----~~~d~v~~  179 (313)
                      -++++.+|||+|||||+|+..+++.++ ...|+++|+...+...... .+..+.  ++.....  |.     ..+|.|+.
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~-~~~~g~--~ii~~~~~~dv~~l~~~~~DvVLS  162 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIM-RTTLGW--NLIRFKDKTDVFNMEVIPGDTLLC  162 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG--GGEEEECSCCGGGSCCCCCSEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccc-cccCCC--ceEEeeCCcchhhcCCCCcCEEEe
Confidence            367899999999999999999987654 3578999998653211110 001121  2333332  22     23555666


Q ss_pred             ccccC------cc--------ccccccccc--cc-cccccc--ccchhHH--HHHHHHHHHHHhhhhhccccCcceeEee
Q 021397          180 RLLLD------PG--------SCNSVLQEK--DD-TFREWT--SRIPWKE--RKRAVKARENAASKAIVRSEHPELIFYG  238 (313)
Q Consensus       180 D~~l~------~~--------s~sg~l~~~--p~-~~~~w~--~~~~~~~--~~~~~q~~~l~~~~~~~r~~~~El~~~~  238 (313)
                      |-...      |.        .+...+...  .. +.|.|+  ......+  ..++.|..+...++ ++|++|.|+|+++
T Consensus       163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~  241 (282)
T 3gcz_A          163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVP-LSRNSTHEMYWVS  241 (282)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEET
T ss_pred             cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcC-CCcccCcceeEEE
Confidence            62211      00        011123333  22 566776  3333322  23666666777889 9999999999998


Q ss_pred             cCCc
Q 021397          239 RRSG  242 (313)
Q Consensus       239 k~gG  242 (313)
                      +..|
T Consensus       242 ~~r~  245 (282)
T 3gcz_A          242 GTRT  245 (282)
T ss_dssp             TCCC
T ss_pred             ecCC
Confidence            8754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.34  E-value=2.3e-07  Score=88.31  Aligned_cols=87  Identities=10%  Similarity=0.000  Sum_probs=57.7

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEecCCCCCCccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR-LFVADGTTFSLAPLR  180 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~-~~~~D~~~~d~v~~D  180 (313)
                      +...+.+.++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++    ++..... +...++..++  ..+
T Consensus        99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~--~~~  169 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR--RTE  169 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH--HHH
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc--cCC
Confidence            445566778999999999999999999875   35899999999999988865    4421110 1111221111  113


Q ss_pred             cccCccccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p~  197 (313)
                      ..||.+.+..++.+.++
T Consensus       170 ~~fD~I~~~~vl~h~~d  186 (416)
T 4e2x_A          170 GPANVIYAANTLCHIPY  186 (416)
T ss_dssp             CCEEEEEEESCGGGCTT
T ss_pred             CCEEEEEECChHHhcCC
Confidence            44555677787776654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.31  E-value=3.3e-07  Score=90.64  Aligned_cols=95  Identities=15%  Similarity=0.052  Sum_probs=75.1

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC--------------CcEEEEEcCCHHHHHHHHH
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD--------------SGSVTGVDVARHRLAACRT  153 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~--------------~~~V~avD~s~~~l~~~~~  153 (313)
                      ..|.||--..-+.+++.++.++++ +|||.|||+|++...+++.+..              ...++|+|+++.+++.++.
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            457777777778888899998887 9999999999999888765421              3579999999999999999


Q ss_pred             HHHHcCCCCcEEEEecCCC--------CCCcccccccc
Q 021397          154 LLQKYALGDRCRLFVADGT--------TFSLAPLRLLL  183 (313)
Q Consensus       154 ~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~~l  183 (313)
                      |+..+|+..++.+.++|..        .||+|+.+|-|
T Consensus       302 Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf  339 (544)
T 3khk_A          302 NMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPF  339 (544)
T ss_dssp             HHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCS
T ss_pred             HHHHhCCCcccceeccchhcCcccccccccEEEECCCc
Confidence            9999998655555778853        35666677554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.30  E-value=1.3e-06  Score=80.50  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=50.9

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+|||+|||.|+.+..+++..++ .+|+++|+++.+++.+++++.... ..+++++.+|+..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~  150 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARM  150 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHH
Confidence            49999999999999999997654 599999999999999998875432 2479999999854

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.26  E-value=1.3e-06  Score=79.58  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             cCCCCCCEEEEECC------CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE-EecCCCCCC
Q 021397          106 LNISAGDHVLDLCA------APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL-FVADGTTFS  175 (313)
Q Consensus       106 l~~~~g~~VLDlca------gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~-~~~D~~~~d  175 (313)
                      +.+++|++|||+||      |||+  ..+++.++..++|+|+|+|+.             +. ++++ +++|+..++
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVH  119 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCC
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCC
Confidence            46789999999999      7788  666777775689999999998             12 5778 999987644

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.24  E-value=1.1e-06  Score=83.42  Aligned_cols=57  Identities=16%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             CCCEEEEECCC------cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          110 AGDHVLDLCAA------PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       110 ~g~~VLDlcag------pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ++.+|||+|||      +|+.++.+++...+.++|+|+|+|+.|.         .. ..+++++++|+..+++
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~GDa~dlpf  278 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQGDQNDAEF  278 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEECCTTCHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEEecccccch
Confidence            56899999999      7888888887764458999999999973         12 2479999999987654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.22  E-value=7.4e-06  Score=80.70  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC------------CcEEEEEcCCHHHHHHHHHHH
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD------------SGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~------------~~~V~avD~s~~~l~~~~~~~  155 (313)
                      +.|.||-=..-+.+.+.++++++|++|+|-|||+|++...+.+.+..            ...++|+|+++.....++-|+
T Consensus       195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl  274 (530)
T 3ufb_A          195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL  274 (530)
T ss_dssp             SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred             cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence            45766666667788899999999999999999999999888776532            246999999999999999999


Q ss_pred             HHcCCCCcEEEEecCCC-----------CCCcccccccc
Q 021397          156 QKYALGDRCRLFVADGT-----------TFSLAPLRLLL  183 (313)
Q Consensus       156 ~~~g~~~~v~~~~~D~~-----------~~d~v~~D~~l  183 (313)
                      --+|.. ...+..+|..           .||+|+.+|-|
T Consensus       275 ~lhg~~-~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          275 LLHGLE-YPRIDPENSLRFPLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             HHHTCS-CCEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred             HhcCCc-cccccccccccCchhhhcccccceEEEecCCC
Confidence            888885 4567777763           36666677554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.21  E-value=1.1e-07  Score=85.35  Aligned_cols=131  Identities=11%  Similarity=0.042  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-------CCCcccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-------TFSLAPL  179 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-------~~d~v~~  179 (313)
                      .++++.+|||+|||||+++..+++..+ ...|+|+|+.......... .+..|.  ++..+..++.       .+|.++.
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~-~~~~g~--~ii~~~~~~dv~~l~~~~~DlVls  146 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMN-VQSLGW--NIITFKDKTDIHRLEPVKCDTLLC  146 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCC-CCBTTG--GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccc-cCcCCC--CeEEEeccceehhcCCCCccEEEe
Confidence            367889999999999999999887643 3568888887432100000 001121  3444555432       3445555


Q ss_pred             ccccCcccc----------------ccccccc-cc-cccccc--ccchhHH--HHHHHHHHHHHhhhhhccccCcceeEe
Q 021397          180 RLLLDPGSC----------------NSVLQEK-DD-TFREWT--SRIPWKE--RKRAVKARENAASKAIVRSEHPELIFY  237 (313)
Q Consensus       180 D~~l~~~s~----------------sg~l~~~-p~-~~~~w~--~~~~~~~--~~~~~q~~~l~~~~~~~r~~~~El~~~  237 (313)
                      |-...  ++                ...+... .. +.|.|+  ......+  ..++.|..+...+| ++|++|.|+|++
T Consensus       147 D~apn--sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V  223 (277)
T 3evf_A          147 DIGES--SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYV  223 (277)
T ss_dssp             CCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEE
T ss_pred             cCccC--cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeC-CCCCCCCceEEE
Confidence            52111  11                1122222 22 456666  3322222  23666666777889 999999999999


Q ss_pred             ecCCcEE
Q 021397          238 GRRSGIV  244 (313)
Q Consensus       238 ~k~gG~l  244 (313)
                      ++..|-+
T Consensus       224 ~~~r~n~  230 (277)
T 3evf_A          224 SGARSNV  230 (277)
T ss_dssp             SSCCCCH
T ss_pred             EecCCCc
Confidence            8876543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.20  E-value=1.6e-06  Score=74.40  Aligned_cols=68  Identities=21%  Similarity=0.044  Sum_probs=47.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      ++..+....++.+|||+|||+|..+..++      ..|+++|+|+.                ++.++.+|+..++.  .+
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~~~--~~  113 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQVPL--ED  113 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSCSC--CT
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccCCC--CC
Confidence            33334445678899999999999987763      57999999987                24578888877543  13


Q ss_pred             cccCcccccccc
Q 021397          181 LLLDPGSCNSVL  192 (313)
Q Consensus       181 ~~l~~~s~sg~l  192 (313)
                      ..||.+.+..++
T Consensus       114 ~~fD~v~~~~~l  125 (215)
T 2zfu_A          114 ESVDVAVFCLSL  125 (215)
T ss_dssp             TCEEEEEEESCC
T ss_pred             CCEeEEEEehhc
Confidence            345555666655

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.18  E-value=6.6e-06  Score=77.19  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++       .+++++.+|+..
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~  257 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD  257 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC
Confidence            556789999999999999999998754 78999999 8888766532       379999999864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.17  E-value=5e-06  Score=77.93  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=57.9

Q ss_pred             HhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397          104 SALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL  182 (313)
Q Consensus       104 ~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~  182 (313)
                      ..++ ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      .. +++++.+|+.. +...    
T Consensus       202 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~~~----  267 (372)
T 1fp1_D          202 EIYTGFEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------LS-GIEHVGGDMFA-SVPQ----  267 (372)
T ss_dssp             HHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------CT-TEEEEECCTTT-CCCC----
T ss_pred             HHhhccCCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------cC-CCEEEeCCccc-CCCC----
Confidence            3444 56788999999999999999999875 478999999 888877664      22 69999999865 3211    


Q ss_pred             cCcccccccccccc
Q 021397          183 LDPGSCNSVLQEKD  196 (313)
Q Consensus       183 l~~~s~sg~l~~~p  196 (313)
                      +|.+.+..++++.+
T Consensus       268 ~D~v~~~~~lh~~~  281 (372)
T 1fp1_D          268 GDAMILKAVCHNWS  281 (372)
T ss_dssp             EEEEEEESSGGGSC
T ss_pred             CCEEEEecccccCC
Confidence            34446666665443

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.15  E-value=6.5e-06  Score=81.28  Aligned_cols=96  Identities=14%  Similarity=0.060  Sum_probs=76.1

Q ss_pred             cCCeEEEecHHHHHHHHhcC----CCCCCEEEEECCCcChHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           88 KQGKIYGIDAASGAAVSALN----ISAGDHVLDLCAAPGAKLCMILDIIG--DSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~----~~~g~~VLDlcagpG~kt~~la~~~~--~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ..|.||-=..-+.+++.++.    ++++.+|+|.|||+|++...+++.+.  +...++|+|+++.++..++.|+..+|+.
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  274 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP  274 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence            45666666666777777776    67889999999999999999998863  2468999999999999999999999984


Q ss_pred             -CcEEEEecCCCC----------CCcccccccc
Q 021397          162 -DRCRLFVADGTT----------FSLAPLRLLL  183 (313)
Q Consensus       162 -~~v~~~~~D~~~----------~d~v~~D~~l  183 (313)
                       +++.+.++|...          ||+|+.+|-|
T Consensus       275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf  307 (542)
T 3lkd_A          275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPY  307 (542)
T ss_dssp             GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCT
T ss_pred             cCccceEecceecccccccccccccEEEecCCc
Confidence             368899998642          4556666544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.15  E-value=1.9e-06  Score=77.81  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      -+...|++++|+.++|++||.||.|..|++.   .++|+|+|.++.+++.+++ ++.    ++++++++|...
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~   77 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH   77 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch
Confidence            3566788999999999999999999999997   4799999999999999987 543    379999998854

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.13  E-value=9e-06  Score=76.18  Aligned_cols=61  Identities=11%  Similarity=0.078  Sum_probs=49.6

Q ss_pred             HhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          104 SALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       104 ~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..++ ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++.       .+++++.+|+..
T Consensus       194 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~  255 (364)
T 3p9c_A          194 ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK  255 (364)
T ss_dssp             HHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT
T ss_pred             HhcccccCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC
Confidence            3444 667889999999999999999998764 68999999 8887766531       379999999865

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.12  E-value=2.2e-06  Score=76.95  Aligned_cols=63  Identities=6%  Similarity=-0.099  Sum_probs=51.2

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVADGTTF  174 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~D~~~~  174 (313)
                      ..+.+|||+|||+|+.+..+++. +  .+|+++|+++.+++.+++++...  ++ ..+++++.+|+..+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH
Confidence            34579999999999999998876 4  79999999999999999876431  11 24799999999764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.07  E-value=3.6e-06  Score=77.72  Aligned_cols=66  Identities=21%  Similarity=0.326  Sum_probs=56.8

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ++..|.++||+.++|+++|.||.|..+++.+++.|+|+|+|.++.+++.++ ++   . .+++++++++..
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~-~~Rv~lv~~nF~  114 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---D-DPRFSIIHGPFS  114 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---C-CTTEEEEESCGG
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---c-CCcEEEEeCCHH
Confidence            567788999999999999999999999999887899999999999999884 33   2 357889988764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.05  E-value=4.1e-07  Score=82.31  Aligned_cols=128  Identities=12%  Similarity=0.011  Sum_probs=72.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec--CC-----CCCCccccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DG-----TTFSLAPLR  180 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~--D~-----~~~d~v~~D  180 (313)
                      .++|.+|||+|||||+|+..+++..+ ...|+|+|+.......... .+..+.  ++.....  |.     ..+|.++.|
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~--~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW--NIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG--GGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC--ceEEeecCceeeecCCCCcCEEeec
Confidence            45899999999999999999998654 3578999997532110000 000111  2222221  22     234555555


Q ss_pred             cccCcccccc------------------ccccc-cc-cccccc--ccchhHH--HHHHHHHHHHHhhhhhccccCcceeE
Q 021397          181 LLLDPGSCNS------------------VLQEK-DD-TFREWT--SRIPWKE--RKRAVKARENAASKAIVRSEHPELIF  236 (313)
Q Consensus       181 ~~l~~~s~sg------------------~l~~~-p~-~~~~w~--~~~~~~~--~~~~~q~~~l~~~~~~~r~~~~El~~  236 (313)
                      -+.   . +|                  .+... .. +.|.|+  ......+  ..++.|..+...+| ++|++|.|+|+
T Consensus       155 ~AP---n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KP-aSR~~S~E~Y~  229 (300)
T 3eld_A          155 IGE---S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYY  229 (300)
T ss_dssp             CCC---C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEE
T ss_pred             CcC---C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeC-CCCCCChHHee
Confidence            110   1 22                  22333 22 455565  3332222  23566666777888 99999999999


Q ss_pred             eecCCcEE
Q 021397          237 YGRRSGIV  244 (313)
Q Consensus       237 ~~k~gG~l  244 (313)
                      ||...|-+
T Consensus       230 V~~~r~n~  237 (300)
T 3eld_A          230 ISGARNNI  237 (300)
T ss_dssp             ESSCCCCH
T ss_pred             eccCCCCc
Confidence            98875433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.04  E-value=1.2e-05  Score=74.81  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=56.0

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++      .. +++++.+|+.. +..    .+|.+.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~p----~~D~v~  251 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSG------SN-NLTYVGGDMFT-SIP----NADAVL  251 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------BT-TEEEEECCTTT-CCC----CCSEEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhccc------CC-CcEEEeccccC-CCC----CccEEE
Confidence            456789999999999999999998754 68999999 999887764      22 59999999854 221    244446


Q ss_pred             ccccccccc
Q 021397          188 CNSVLQEKD  196 (313)
Q Consensus       188 ~sg~l~~~p  196 (313)
                      +..++++.+
T Consensus       252 ~~~~lh~~~  260 (352)
T 1fp2_A          252 LKYILHNWT  260 (352)
T ss_dssp             EESCGGGSC
T ss_pred             eehhhccCC
Confidence            666665443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.04  E-value=1.5e-05  Score=70.47  Aligned_cols=59  Identities=14%  Similarity=0.065  Sum_probs=51.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .+..+|||+|||.|-.+..+.    +...++|+|+++.+++.+++++.+.|.  +..+...|...
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~  162 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLC  162 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTT
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeccc
Confidence            457899999999999998776    357999999999999999999999986  68888888754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.96  E-value=4.5e-06  Score=73.08  Aligned_cols=130  Identities=12%  Similarity=0.101  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-CCC-----CCCccccc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-DGT-----TFSLAPLR  180 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~-----~~d~v~~D  180 (313)
                      .+++++.|+|+|||||+++..++...+. ..|+|+|+-..--+. -...+.+|.. .|++..+ |..     .+|.++.|
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~-P~~~~s~gwn-~v~fk~gvDv~~~~~~~~DtllcD  151 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEE-PVPMSTYGWN-IVKLMSGKDVFYLPPEKCDTLLCD  151 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCC-CCCCCCTTTT-SEEEECSCCGGGCCCCCCSEEEEC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccC-cchhhhcCcC-ceEEEeccceeecCCccccEEEEe
Confidence            4679999999999999999999887653 489999986542210 0012456664 6899988 853     24445555


Q ss_pred             --cccCcccccc------cc----------cccccccccccccchhH-HHHHHHHHH---HHHhhhhhccccCcceeEee
Q 021397          181 --LLLDPGSCNS------VL----------QEKDDTFREWTSRIPWK-ERKRAVKAR---ENAASKAIVRSEHPELIFYG  238 (313)
Q Consensus       181 --~~l~~~s~sg------~l----------~~~p~~~~~w~~~~~~~-~~~~~~q~~---~l~~~~~~~r~~~~El~~~~  238 (313)
                        |.    +++-      ++          .+..-.+|.+++..... .....+|.+   .+.+.+. +|.+++|||++.
T Consensus       152 IgeS----s~~~~vE~~RtlrvLela~~wL~~~~fc~KVl~py~p~v~e~l~~lq~~fgg~lVR~P~-SRnsThEMY~Vs  226 (267)
T 3p8z_A          152 IGES----SPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLNPYMPTVIEHLERLQRKHGGMLVRNPL-SRNSTHEMYWIS  226 (267)
T ss_dssp             CCCC----CSCHHHHHHHHHHHHHHHGGGCSSCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEES
T ss_pred             cCCC----CCChhhhhhHHHHHHHHHHHhcccCCEEEEEccCCChhHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEe
Confidence              22    1111      11          11111345566665444 233444433   4556676 899999999996


Q ss_pred             cCCcEE
Q 021397          239 RRSGIV  244 (313)
Q Consensus       239 k~gG~l  244 (313)
                      ...|-+
T Consensus       227 g~~~ni  232 (267)
T 3p8z_A          227 NGTGNI  232 (267)
T ss_dssp             SCCCCH
T ss_pred             cCCCce
Confidence            655544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.93  E-value=6.1e-06  Score=77.27  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +++|++|||+||+|||+|..++++   ++.|+|||+.+-     ...+.  .. .+|+++.+|+..+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l-----~~~l~--~~-~~V~~~~~d~~~~~  265 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPM-----AQSLM--DT-GQVTWLREDGFKFR  265 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCC-----CHHHH--TT-TCEEEECSCTTTCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhc-----Chhhc--cC-CCeEEEeCcccccc
Confidence            578999999999999999999885   479999998641     11121  12 37999999986654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.86  E-value=1.2e-05  Score=72.49  Aligned_cols=134  Identities=19%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-CCCCCCcccccccc-C
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-DGTTFSLAPLRLLL-D  184 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~~~d~v~~D~~l-~  184 (313)
                      .+++++.|||+||||||++..++...+. ..|+|+|+-..--+. -..++.++.. .|.++.+ |+..+....+|-.+ |
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~-P~~~~ql~w~-lV~~~~~~Dv~~l~~~~~D~ivcD  167 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEE-PQLVQSYGWN-IVTMKSGVDVFYRPSECCDTLLCD  167 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCC-CCCCCBTTGG-GEEEECSCCTTSSCCCCCSEEEEC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccC-cchhhhcCCc-ceEEEeccCHhhCCCCCCCEEEEE
Confidence            4678999999999999999988877553 479999997651100 0001233432 3677766 76443322233111 1


Q ss_pred             cccccc--------c----------cccccc--ccccccccchhH-HHHHHHHHH---HHHhhhhhccccCcceeEeecC
Q 021397          185 PGSCNS--------V----------LQEKDD--TFREWTSRIPWK-ERKRAVKAR---ENAASKAIVRSEHPELIFYGRR  240 (313)
Q Consensus       185 ~~s~sg--------~----------l~~~p~--~~~~w~~~~~~~-~~~~~~q~~---~l~~~~~~~r~~~~El~~~~k~  240 (313)
                      ..-.++        +          +.++|.  .+|.+.+=.... .....+|.+   .+.+.+. +|.++.|||++...
T Consensus       168 igeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lvr~P~-SRnst~EmY~vsGa  246 (321)
T 3lkz_A          168 IGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLVRNPL-SRNSTHEMYWVSRA  246 (321)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEETTC
T ss_pred             CccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEecC
Confidence            111111        1          122322  345555533333 223344443   4556666 89999999999665


Q ss_pred             CcEE
Q 021397          241 SGIV  244 (313)
Q Consensus       241 gG~l  244 (313)
                      .|-|
T Consensus       247 ~gNI  250 (321)
T 3lkz_A          247 SGNV  250 (321)
T ss_dssp             CSCH
T ss_pred             CCCe
Confidence            5544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.85  E-value=8.2e-06  Score=72.97  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+..+|||+|||.|-.+..++... +...++|+|+++.+++.+++|+.++|+.  ..+...|..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~  191 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLL  191 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTT
T ss_pred             CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeec
Confidence            346799999999999999888754 3579999999999999999999999984  678887764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.84  E-value=2.9e-05  Score=72.23  Aligned_cols=75  Identities=15%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      .. +++++.+|+.. +..    .+|.+.
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~~----~~D~v~  256 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------NE-NLNFVGGDMFK-SIP----SADAVL  256 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------CS-SEEEEECCTTT-CCC----CCSEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------CC-CcEEEeCccCC-CCC----CceEEE
Confidence            34678999999999999999999875 368999999 788876653      23 59999999865 322    244446


Q ss_pred             ccccccccc
Q 021397          188 CNSVLQEKD  196 (313)
Q Consensus       188 ~sg~l~~~p  196 (313)
                      +..+++..+
T Consensus       257 ~~~vlh~~~  265 (358)
T 1zg3_A          257 LKWVLHDWN  265 (358)
T ss_dssp             EESCGGGSC
T ss_pred             EcccccCCC
Confidence            666665433

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.76  E-value=5.7e-05  Score=77.09  Aligned_cols=94  Identities=13%  Similarity=0.029  Sum_probs=62.3

Q ss_pred             CCeEEEecHHHHHHHHh----cC--CCCCCEEEEECCCcChHHHHHHHHhCC--CcEEEEEcCCHHHHHHH--HHHHHH-
Q 021397           89 QGKIYGIDAASGAAVSA----LN--ISAGDHVLDLCAAPGAKLCMILDIIGD--SGSVTGVDVARHRLAAC--RTLLQK-  157 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~----l~--~~~g~~VLDlcagpG~kt~~la~~~~~--~~~V~avD~s~~~l~~~--~~~~~~-  157 (313)
                      .|.|+--..-+.+++.+    +.  ..++.+|||.|||+|+....+++.++.  ...++|+|+++.+++.+  +.|+.. 
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            35555544545555554    33  246889999999999999999987642  35799999999999999  555544 


Q ss_pred             ---cCCCCcEEEEecCCC--------CCCcccccccc
Q 021397          158 ---YALGDRCRLFVADGT--------TFSLAPLRLLL  183 (313)
Q Consensus       158 ---~g~~~~v~~~~~D~~--------~~d~v~~D~~l  183 (313)
                         .|.. ...+...|..        .||.+..||-|
T Consensus       374 ~LlhGi~-~~~I~~dD~L~~~~~~~~kFDVVIgNPPY  409 (878)
T 3s1s_A          374 QLVSSNN-APTITGEDVCSLNPEDFANVSVVVMNPPY  409 (878)
T ss_dssp             TTCBTTB-CCEEECCCGGGCCGGGGTTEEEEEECCBC
T ss_pred             hhhcCCC-cceEEecchhcccccccCCCCEEEECCCc
Confidence               3332 2345555543        35566666543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.75  E-value=0.00012  Score=73.17  Aligned_cols=65  Identities=11%  Similarity=-0.013  Sum_probs=52.2

Q ss_pred             CCEEEEECCCcChH---HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          111 GDHVLDLCAAPGAK---LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       111 g~~VLDlcagpG~k---t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +..|||+|||+|-.   ++.+++..+...+|+|||.|+ +...+++..+.+|+.++|+++.+|++.++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L  425 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA  425 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC
Confidence            34799999999988   555555544334799999997 566788888999999999999999998754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.70  E-value=1.3e-05  Score=66.50  Aligned_cols=69  Identities=16%  Similarity=0.103  Sum_probs=49.9

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc-ccccc
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP-LRLLL  183 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~-~D~~l  183 (313)
                      -+++++|++|||+|||.                 +++|+|+.|++.+++++.     .+++++++|+..++... .+..|
T Consensus         7 ~~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TTTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             ccCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCE
Confidence            34678999999999985                 239999999999997642     14789999998765421 23456


Q ss_pred             Cccccccccccc
Q 021397          184 DPGSCNSVLQEK  195 (313)
Q Consensus       184 ~~~s~sg~l~~~  195 (313)
                      |.+.|..++++.
T Consensus        65 D~V~~~~~l~~~   76 (176)
T 2ld4_A           65 DIILSGLVPGST   76 (176)
T ss_dssp             EEEEECCSTTCC
T ss_pred             eEEEECChhhhc
Confidence            666776666544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.52  E-value=0.00027  Score=64.16  Aligned_cols=49  Identities=22%  Similarity=0.264  Sum_probs=42.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .+|+.|||.+||+|..+..+++. +  ..++|+|+++.+++.+++++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~-g--~~~~g~e~~~~~~~~a~~r~~~~~~  282 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW-G--RRALGVELVPRYAQLAKERFAREVP  282 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHST
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            68999999999999998887764 3  5899999999999999999988643

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.51  E-value=0.00029  Score=63.69  Aligned_cols=63  Identities=13%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhC----CCcEEEEEcCCH--------------------------HHHHHHHHHHHHcC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIG----DSGSVTGVDVAR--------------------------HRLAACRTLLQKYA  159 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~----~~~~V~avD~s~--------------------------~~l~~~~~~~~~~g  159 (313)
                      ....||++|++.|+.++.+++.+.    ..++|+++|..+                          .+++.++++++++|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            345999999999999999998764    257899999642                          15788999999999


Q ss_pred             CC-CcEEEEecCCC
Q 021397          160 LG-DRCRLFVADGT  172 (313)
Q Consensus       160 ~~-~~v~~~~~D~~  172 (313)
                      +. ++|+++.+|+.
T Consensus       186 l~~~~I~li~Gda~  199 (282)
T 2wk1_A          186 LLDEQVRFLPGWFK  199 (282)
T ss_dssp             CCSTTEEEEESCHH
T ss_pred             CCcCceEEEEeCHH
Confidence            83 78999999984

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.38  E-value=0.0003  Score=70.73  Aligned_cols=65  Identities=9%  Similarity=-0.051  Sum_probs=49.0

Q ss_pred             CCEEEEECCCcChHHHHH---HHHhC---------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          111 GDHVLDLCAAPGAKLCMI---LDIIG---------DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~l---a~~~~---------~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      +..|||+|||+|-.+...   ++..+         ...+|+|||.|+.....++.... .|+.++|+++.+|++.+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccc
Confidence            357999999999997533   32222         23499999999988776665544 7888789999999987654

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.37  E-value=0.0004  Score=64.76  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             CeEEEecHH-HHHHHHhcCCCC------CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           90 GKIYGIDAA-SGAAVSALNISA------GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        90 G~~~~Qd~s-s~~~~~~l~~~~------g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      |.-++.|+. ...++..+++++      ++.|||+|.|+|..|..|++.... .+|+|+|+++..+..+++.+ .  . +
T Consensus        31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~-~--~-~  105 (353)
T 1i4w_A           31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF-E--G-S  105 (353)
T ss_dssp             GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT-T--T-S
T ss_pred             CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc-c--C-C
Confidence            443444544 344667777764      589999999999999999987532 58999999999999998776 2  2 4


Q ss_pred             cEEEEecCCCCCC
Q 021397          163 RCRLFVADGTTFS  175 (313)
Q Consensus       163 ~v~~~~~D~~~~d  175 (313)
                      +++++.+|+..++
T Consensus       106 ~l~ii~~D~l~~~  118 (353)
T 1i4w_A          106 PLQILKRDPYDWS  118 (353)
T ss_dssp             SCEEECSCTTCHH
T ss_pred             CEEEEECCccchh
Confidence            7999999996654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.29  E-value=0.00014  Score=65.54  Aligned_cols=114  Identities=12%  Similarity=0.055  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEECC------CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC------CCC
Q 021397          107 NISAGDHVLDLCA------APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG------TTF  174 (313)
Q Consensus       107 ~~~~g~~VLDlca------gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~------~~~  174 (313)
                      .+.-|++|||+||      +||+.  .+.+..+.++.|+++|+.+--.           .. . .++++|.      ..+
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da-~-~~IqGD~~~~~~~~k~  170 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DA-D-STLIGDCATVHTANKW  170 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SS-S-EEEESCGGGEEESSCE
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CC-C-eEEEccccccccCCCC
Confidence            3556999999997      99993  4444433335999999976321           11 2 3478885      346


Q ss_pred             Cccccc-cccCccccccc----------------------cccccc-ccccccccchhHHHH-HHHHHHHHHhhhhhccc
Q 021397          175 SLAPLR-LLLDPGSCNSV----------------------LQEKDD-TFREWTSRIPWKERK-RAVKARENAASKAIVRS  229 (313)
Q Consensus       175 d~v~~D-~~l~~~s~sg~----------------------l~~~p~-~~~~w~~~~~~~~~~-~~~q~~~l~~~~~~~r~  229 (313)
                      |.|+.| ..    ..+|.                      +..... ++|.|++...+.+.. .+.|..+.... ..+|.
T Consensus       171 DLVISDMAP----NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~VK~fK-~ASRa  245 (344)
T 3r24_A          171 DLIISDMYD----PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFV-TNVNA  245 (344)
T ss_dssp             EEEEECCCC----TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEE-EGGGT
T ss_pred             CEEEecCCC----CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCeEEEEC-CCCCC
Confidence            667777 11    22222                      111111 567777766433222 33333333333 68899


Q ss_pred             cCcceeEeecC
Q 021397          230 EHPELIFYGRR  240 (313)
Q Consensus       230 ~~~El~~~~k~  240 (313)
                      +|+|+|++++.
T Consensus       246 ~SsEvYLVG~g  256 (344)
T 3r24_A          246 SSSEAFLIGAN  256 (344)
T ss_dssp             TSSCEEEEEEE
T ss_pred             CCeeEEEEeee
Confidence            99999999764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.27  E-value=0.00029  Score=62.87  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=46.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHh------CC-----CcEEEEEcCCH---HHHH-----------HHHHHHHHc----
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDII------GD-----SGSVTGVDVAR---HRLA-----------ACRTLLQKY----  158 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~------~~-----~~~V~avD~s~---~~l~-----------~~~~~~~~~----  158 (313)
                      .+++.+|||+|+|+|..++.+++..      .+     ...++++|..+   +++.           .++++++.+    
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            3456799999999999999887764      33     25899999876   5444           455565542    


Q ss_pred             ------CCC---CcEEEEecCCCC
Q 021397          159 ------ALG---DRCRLFVADGTT  173 (313)
Q Consensus       159 ------g~~---~~v~~~~~D~~~  173 (313)
                            .+.   .+++++.+|+..
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~  161 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINE  161 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHH
T ss_pred             cchhheeccCCceEEEEEECcHHH
Confidence                  111   267889999854

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.21  E-value=0.0012  Score=62.82  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEECCCcChHHHHHH-HHhCCCcEEEEEcCCHHHHHHHHHHHHH--c-CCCCcEEEEec
Q 021397          107 NISAGDHVLDLCAAPGAKLCMIL-DIIGDSGSVTGVDVARHRLAACRTLLQK--Y-ALGDRCRLFVA  169 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la-~~~~~~~~V~avD~s~~~l~~~~~~~~~--~-g~~~~v~~~~~  169 (313)
                      .+++++.|+|+||+.|..|..++ +..++.++|+|+|.++...+.+++|++.  + +...+++++..
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~  289 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC  289 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence            45789999999999999999988 4544448999999999999999999998  2 34147877654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.88  E-value=0.0012  Score=58.70  Aligned_cols=49  Identities=18%  Similarity=0.333  Sum_probs=40.5

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .+|+.|||.+||+|..+..+.++ +  .+++++|+++..++.++++++..++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~-g--r~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHhccC
Confidence            68999999999999988776653 3  5899999999999999999986654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.56  E-value=0.0022  Score=52.10  Aligned_cols=39  Identities=13%  Similarity=-0.016  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCCcC-hHHHHHHHHhCCCcEEEEEcCCHHHHH
Q 021397          109 SAGDHVLDLCAAPG-AKLCMILDIIGDSGSVTGVDVARHRLA  149 (313)
Q Consensus       109 ~~g~~VLDlcagpG-~kt~~la~~~~~~~~V~avD~s~~~l~  149 (313)
                      .++.+|||+|||+| ..+..|++..+  ..|+|+|+++..++
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~   73 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG   73 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc
Confidence            46789999999999 58999987532  57999999998775

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.07  E-value=0.02  Score=51.84  Aligned_cols=69  Identities=23%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--C--CCCcEEEEecCCCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--A--LGDRCRLFVADGTT  173 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g--~~~~v~~~~~D~~~  173 (313)
                      +..+.+. ..+||=+|.|-|+.+..+++.-+ ..+|+.+|+++..++.+++.+...  +  -+.+++++.+|+..
T Consensus        77 ~l~~~p~-pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~  149 (294)
T 3o4f_A           77 PLLAHGH-AKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN  149 (294)
T ss_dssp             HHHHSSC-CCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT
T ss_pred             HHhhCCC-CCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH
Confidence            3344444 46999999999999998887643 368999999999999999887543  1  12589999999964

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.03  E-value=0.00076  Score=60.78  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             CcEEeCCCCCCcccccccCCeEEEec-----HHH-HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCC
Q 021397           71 GFYSLPPDIKIATSMAYKQGKIYGID-----AAS-GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA  144 (313)
Q Consensus        71 ~~~~l~~~~~~~~~~~~~~G~~~~Qd-----~ss-~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s  144 (313)
                      +.|.+.+. .-.++.+|.+|...+.+     +.. .-....+..-.+..+||+.+|+|..++.+.+   +..+++.+|.+
T Consensus        47 G~Y~L~~~-~a~ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~~n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~  122 (283)
T 2oo3_A           47 GIYDLKDK-QSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLR---SQDRLYLCELH  122 (283)
T ss_dssp             SEEETTCC-----CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHHHSSSSSCCEEECHHHHHHHHSC---TTSEEEEECCS
T ss_pred             CccCCCCh-HHhhcHHHHHHHHHHHhcccCCcHHHHHHHHHHHHhcCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCC
Confidence            34555432 24567788888755432     110 0111112112466799999999999998776   33689999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEEecCCC-----------CCCccccccccC
Q 021397          145 RHRLAACRTLLQKYALGDRCRLFVADGT-----------TFSLAPLRLLLD  184 (313)
Q Consensus       145 ~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----------~~d~v~~D~~l~  184 (313)
                      +..++.+++|++.   .+++++++.|+.           .|++|++||.+.
T Consensus       123 ~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe  170 (283)
T 2oo3_A          123 PTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE  170 (283)
T ss_dssp             HHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred             HHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence            9999999999865   247999999962           478899997654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.99  E-value=0.009  Score=55.30  Aligned_cols=57  Identities=14%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|+|++||.|+.++.+.+.-.+-..|+++|+++.+++..+.|..      +..++.+|+..+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~   59 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGI   59 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHc
Confidence            479999999999999888751111379999999999999998852      234677887654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.78  E-value=0.0064  Score=55.99  Aligned_cols=44  Identities=16%  Similarity=0.120  Sum_probs=37.5

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  156 (313)
                      +.+|+|++||.||.+..+.+. + -..|.++|+++..++..+.|..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcC
Confidence            568999999999999988764 3 3468999999999999998863

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.72  E-value=0.021  Score=53.60  Aligned_cols=55  Identities=16%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|+|++||.||.+.-+.+. + -..|.|+|+++..++..+.|.     . +..++++|+..+
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G-~~~v~avE~d~~a~~t~~~N~-----~-~~~~~~~DI~~~   57 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-G-FDVKMAVEIDQHAINTHAINF-----P-RSLHVQEDVSLL   57 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-T-CEEEEEECSCHHHHHHHHHHC-----T-TSEEECCCGGGC
T ss_pred             CeEEEEccCcCHHHHHHHHC-C-CcEEEEEeCCHHHHHHHHHhC-----C-CCceEecChhhc
Confidence            58999999999999988775 2 346789999999999988774     2 456788887655

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.22  E-value=0.22  Score=46.68  Aligned_cols=34  Identities=21%  Similarity=0.026  Sum_probs=27.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHh----------------CCCcEEEEEcCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDII----------------GDSGSVTGVDVA  144 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~----------------~~~~~V~avD~s  144 (313)
                      ..+|+|+|||+|..|+.+.+.+                .+.-+|+.+|+-
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            4789999999999999887761                123578999987

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.20  E-value=0.071  Score=49.89  Aligned_cols=45  Identities=22%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCEEEEECCCcChHHHHHHHHh--------------CCCcEEEEEcCCHHHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKLCMILDII--------------GDSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~--------------~~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      ..+|+|+|||+|..|+.+...+              .+.-+|+.+|+-.+....+=+.+
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L  111 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL  111 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence            4789999999999999884432              13457888887776665554444

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.04  E-value=0.043  Score=51.41  Aligned_cols=69  Identities=26%  Similarity=0.463  Sum_probs=53.1

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc---CC----CCcEEEEecCCC----------
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY---AL----GDRCRLFVADGT----------  172 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~----~~~v~~~~~D~~----------  172 (313)
                      +..+||=+|.|-|+....+.+. + ..+|+.||+++..++.+++.+...   ..    .++++++.+|+.          
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            4689999999999999988875 3 368999999999999999865321   11    135899999984          


Q ss_pred             -CCCccccc
Q 021397          173 -TFSLAPLR  180 (313)
Q Consensus       173 -~~d~v~~D  180 (313)
                       .||.+.+|
T Consensus       283 ~~yDvIIvD  291 (381)
T 3c6k_A          283 REFDYVIND  291 (381)
T ss_dssp             CCEEEEEEE
T ss_pred             CceeEEEEC
Confidence             36776666

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.87  E-value=0.067  Score=48.92  Aligned_cols=49  Identities=24%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHHHHHHcC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR---HRLAACRTLLQKYA  159 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~---~~l~~~~~~~~~~g  159 (313)
                      -.+|+.|||-.||+|..+....++ +  -..+++|+++   ..++.+++++++.|
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~-~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc-C--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            368999999999999877666554 3  4799999999   99999999887765

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.74  E-value=0.14  Score=47.94  Aligned_cols=47  Identities=23%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      ..++++|++||-.|||+ |..+.++|+.++. .+|+++|.++++++.++
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence            45788999999999877 7778888888752 48999999999988765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.74  E-value=0.045  Score=50.99  Aligned_cols=63  Identities=13%  Similarity=0.000  Sum_probs=42.3

Q ss_pred             CEEEEECCCcChHHHHHHHH---------------hCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDI---------------IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~---------------~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      -+|+|+||++|..|+.+.+.               -.+.-+|+.+|+-.+....+-+.+....-..+..++.+...+|
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            57999999999999865543               1234679999999988888876654321101234666666554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.59  E-value=0.084  Score=47.94  Aligned_cols=55  Identities=11%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++|||++||.||.+.-+-+. + --.|.|+|+++.+++..+.|.   +    -.++.+|.+.++
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~---~----~~~~~~DI~~i~   55 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---S----AKLIKGDISKIS   55 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC---C----SEEEESCGGGCC
T ss_pred             CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---C----CCcccCChhhCC
Confidence            47999999999999887653 3 246789999999999988773   2    256788987654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.52  E-value=0.15  Score=46.14  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=44.5

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGS-VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +.+.+|+|++||.||.+..+.+. +-... |.++|+++..++..+.|.     . ...++.+|.+.++
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~-~~~~~~~DI~~i~   74 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----Q-GKIMYVGDVRSVT   74 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----T-TCEEEECCGGGCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----C-CCceeCCChHHcc
Confidence            34568999999999999887764 32222 699999999998888764     1 2457788887654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.51  E-value=0.053  Score=49.58  Aligned_cols=50  Identities=10%  Similarity=0.081  Sum_probs=40.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      -.+|+.|||-.||+|..+... ..++  -..+++|+++..++.+++++++.+.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa-~~~g--r~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVA-ERES--RKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHH-HHTT--CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             CCCCCEEEECCCCCCHHHHHH-HHcC--CCEEEEeCCHHHHHHHHHHHHhccc
Confidence            368999999999999866544 4444  4899999999999999988876664

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.21  E-value=0.12  Score=47.46  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=42.2

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      -+++|++||.||.+.-+.+. +-. -.|.|+|+++...+..+.|..      ...++.+|...+
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~   60 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQL   60 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccC
Confidence            37999999999999988765 211 358899999999998887752      234567787654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.56  E-value=0.32  Score=44.23  Aligned_cols=51  Identities=18%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ....+++|++||-.|||+ |..+.++++.++  .+|+++|.++++++.++    ++|.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa  211 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGA  211 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTC
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCC
Confidence            345788999999999876 777888888775  58999999999988765    4675

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.50  E-value=0.32  Score=45.29  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=40.1

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ...+++|++||-.|||+ |..+.++|+.++. ..|+++|.++++++.++    ++|.
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAK----AQGF  231 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHH----HTTC
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHH----HcCC
Confidence            34788999999999876 6667788887652 37999999999988775    4565

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.29  E-value=0.32  Score=44.79  Aligned_cols=48  Identities=19%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ..++++|++||-.|||+ |..+.++|+.++. ..|+++|.++++++.+++
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH
Confidence            45788999999999876 6677788887752 379999999999887753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.27  E-value=0.31  Score=44.67  Aligned_cols=53  Identities=21%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++|++||-.|+|+ |..+.++|+.++. ..|+++|.++.+++.++    ++|..
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~lGa~  218 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAK----EIGAD  218 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH----HhCCC
Confidence            345789999999999876 6667777777642 38999999999988765    46763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.28  E-value=0.33  Score=44.42  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=42.3

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCC-CcEE-EEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGD-SGSV-TGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~-~~~V-~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .-+++|++||.||.+.-+.+. +- ...| .|+|+++..++..+.|..     +.  ++.+|.+.++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~~   68 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSIS   68 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTCC
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhcC
Confidence            358999999999999888763 21 1246 799999999999998862     11  5567776553

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.92  E-value=0.43  Score=44.08  Aligned_cols=49  Identities=12%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      +.+++|++||-.|+|+ |..+.++|+.++  ..|+++|.++++++.+++    +|.
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~----lGa  239 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGA  239 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC
Confidence            4788999999999875 666777777764  479999999999887763    565

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=90.68  E-value=0.58  Score=42.72  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...++++|++||-.|+|+ |..+.++|+.++  ..|+++|.++++++.++    ++|..
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~  214 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGAD  214 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCC
Confidence            345789999999999765 555667777664  46999999999988765    46763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.63  E-value=0.4  Score=43.70  Aligned_cols=51  Identities=12%  Similarity=0.069  Sum_probs=40.2

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...+++|++||=.|||+ |..+.++|+.++  .+|+++|.++++++.++    ++|..
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~  222 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVK  222 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCS
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCC
Confidence            34788999999999876 666777787765  58999999999988765    46763

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=90.26  E-value=0.51  Score=43.11  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ....+++|++||=.|+|+ |..+.++|+.++. ..|+++|.++++++.++    ++|.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~----~lGa  212 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIAL----EYGA  212 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHH----HHTC
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH----HhCC
Confidence            456789999999999865 5556677776542 37999999999988765    4565

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.23  E-value=0.66  Score=42.13  Aligned_cols=50  Identities=22%  Similarity=0.280  Sum_probs=40.2

Q ss_pred             CCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          107 NISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       107 ~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .+++|++||=.|+|+ |..+.++|+.++. .+|+++|.++++++.++    ++|..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~----~lGa~  218 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSA-ARVIAVDLDDDRLALAR----EVGAD  218 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHH----HTTCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH----HcCCC
Confidence            678999999999876 6667788887743 68999999999988765    46763

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=89.16  E-value=1  Score=41.42  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++|++||=.|+|+ |..+.++|+.++. ..|+++|.++++++.+++    +|..
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~  229 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEE----VGAT  229 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH----HTCS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCC
Confidence            456789999999999866 6667777777652 489999999999887654    6763

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.98  E-value=0.73  Score=42.38  Aligned_cols=51  Identities=10%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ...+++|++||=.|||+ |..+.++|+.++. ..|+++|.++++++.++    ++|.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~lGa  237 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAI----ELGA  237 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH----HTTC
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH----HcCC
Confidence            45688999999999765 5556777777652 37999999999988765    4676

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=88.74  E-value=0.77  Score=42.24  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..++++|++||-.|+|+ |..+.++|+.++. .+|+++|.++++++.++    ++|.
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~----~lGa  238 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAK----VFGA  238 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH----HTTC
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH----HhCC
Confidence            35688999999999765 5556677777642 37999999999988765    4675

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.46  E-value=0.88  Score=41.78  Aligned_cols=51  Identities=16%  Similarity=0.354  Sum_probs=38.9

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..++++|++||=.|+|+ |..+.++|+.++. ..|+++|.++++++.++    ++|.
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~----~lGa  236 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAK----EFGA  236 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH----HHTC
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----HcCC
Confidence            35688999999999765 5556677777652 37999999999988765    4565

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=88.45  E-value=0.82  Score=42.04  Aligned_cols=51  Identities=16%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..++++|++||=.|+|+ |..+.++|+.++. ..|+++|.++++++.++    ++|.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~----~lGa  237 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAK----EVGA  237 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH----HTTC
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----HhCC
Confidence            35688999999999765 5556677776642 37999999999988764    4675

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.40  E-value=0.83  Score=42.03  Aligned_cols=51  Identities=10%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..++++|++||=.|+|+ |..+.++|+.++ ...|+++|.++++++.++    ++|.
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa  241 (376)
T 1e3i_A          190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGA  241 (376)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTC
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCC
Confidence            35688999999999765 555667777764 237999999999988764    4675

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.29  E-value=0.75  Score=42.14  Aligned_cols=49  Identities=10%  Similarity=0.064  Sum_probs=38.4

Q ss_pred             cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .++++|++||-.|+|+ |..+.++|+.++  .+|+++|.++++++.+++    +|.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa  224 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGA  224 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCC
Confidence            5788999999999855 555667777765  479999999999887653    565

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=88.20  E-value=0.9  Score=41.54  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=38.9

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTL  154 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~  154 (313)
                      ....+++|++||=.|||+ |..+.++|+.++. ..|+++|.++++++.+++.
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh
Confidence            345789999999999866 6667777777652 3499999999999988753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=88.07  E-value=1.1  Score=40.59  Aligned_cols=44  Identities=11%  Similarity=0.077  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEECCCc-ChHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHH
Q 021397          107 NISAGDHVLDLCAAP-GAKLCMILDII--GDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       107 ~~~~g~~VLDlcagp-G~kt~~la~~~--~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ++ +|++||-.|+|+ |..+.++|+.+  +  .+|+++|.++++++.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~G--a~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKN--ITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHH
Confidence            77 999999999865 55677778777  5  579999999999887753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=88.03  E-value=0.9  Score=41.66  Aligned_cols=51  Identities=18%  Similarity=0.114  Sum_probs=39.5

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...+++|++||=.|+|+ |..+.++|+..+  .+|+++|.++++++.++    ++|..
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~  235 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAF----ALGAD  235 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HHTCS
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHH----HcCCC
Confidence            35688999999999776 556677777765  58999999999988765    46763

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.68  E-value=0.61  Score=45.03  Aligned_cols=59  Identities=17%  Similarity=0.115  Sum_probs=42.5

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .-+++|++||.||.+.-+.+. + --.|.|+|+++..++..+.|..   ......++.+|+..+
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G-~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-G-GQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-T-EEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhh
Confidence            458999999999999888653 2 2358999999999988887742   111234566777543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=87.66  E-value=1.4  Score=39.78  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=38.5

Q ss_pred             hcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ...+++|++||=.|+|+++ .+.++++.++ ..+|+++|.++++++.++    ++|.
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~----~~Ga  209 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAK----KIGA  209 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHH----HTTC
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhh----hcCC
Confidence            4578899999999998854 4555666554 379999999999987654    4565

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=87.33  E-value=1.6  Score=39.50  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..+++|++||-.|+|+ |..+.++++..+  .+|+++|.++.+++.++    ++|.
T Consensus       160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~lGa  209 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAK----ELGA  209 (339)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHH----HTTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HCCC
Confidence            4788999999999864 455666666654  58999999999988765    4665

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.29  E-value=0.7  Score=42.65  Aligned_cols=53  Identities=13%  Similarity=0.339  Sum_probs=40.5

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++|++||=.|||+ |..+.++|+.++. .+|+++|.++++++.++    ++|..
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~----~lGa~  240 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAK----KFGVN  240 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHH----TTTCC
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----HcCCc
Confidence            345788999999999865 6667777877753 37999999999988665    46753

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=87.09  E-value=0.78  Score=46.79  Aligned_cols=46  Identities=13%  Similarity=-0.050  Sum_probs=35.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHHH
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGD----SGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~----~~~V~avD~s~~~l~~~~~~~  155 (313)
                      +..+|+|+.||.||.++-+.+..+.    --.+.|+|+++.+++..+.|.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3458999999999999888664210    025899999999999988774

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=86.89  E-value=1.4  Score=40.63  Aligned_cols=51  Identities=22%  Similarity=0.203  Sum_probs=37.7

Q ss_pred             hcC-CCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALN-ISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~-~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .++ +++|++||-.|+|+ |..+.++|+.++ ..+|+++|.++++++.++    ++|.
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa  241 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGA  241 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTC
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHH----HcCC
Confidence            356 88999999999654 444566666653 148999999999988765    4675

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=85.24  E-value=1.1  Score=40.18  Aligned_cols=47  Identities=19%  Similarity=0.118  Sum_probs=37.1

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ....+++|++||=.|+|+ |..+.++|+.++  .+|++++ ++++++.+++
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH
Confidence            345688999999999964 666777888775  4899999 9998887754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=84.66  E-value=1.1  Score=40.51  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=39.0

Q ss_pred             HhcCCCCCCEEEEECCC--cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          104 SALNISAGDHVLDLCAA--PGAKLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcag--pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ....+++|++||=.|+|  -|..+.++++..+  .+|+++|.++++++.+++
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence            44678999999999987  5667778888775  589999999999887764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=84.56  E-value=0.91  Score=42.75  Aligned_cols=45  Identities=11%  Similarity=0.079  Sum_probs=35.6

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcE----EEEEcCCHHHHHHHHHHHH
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGS----VTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~----V~avD~s~~~l~~~~~~~~  156 (313)
                      -+|+|+|||.||.+..+-+.-.+-..    |.++|+++.+++..+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            48999999999999888764210123    8999999999999888864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=83.68  E-value=2  Score=39.93  Aligned_cols=49  Identities=24%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          107 NISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       107 ~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .+++|++||=.|||+ |..+.++|+.++ ...|+++|.++.+++.++    ++|.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa  259 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAK----ELGA  259 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHH----HHTC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HcCC
Confidence            578999999999855 555666777664 248999999999988775    4565

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=82.63  E-value=3.6  Score=36.97  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             HHHhcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ......+++|++||=.|||+.| .+.++++.++. ..++++|.++++++.++    ++|..
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~----~lGa~  207 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAK----SFGAM  207 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHH----HcCCe
Confidence            4455678899999999987754 45667777653 57899999999988765    56763

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=82.41  E-value=3.4  Score=37.38  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=35.1

Q ss_pred             cCCCCCCEEEEECCC--cChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHH
Q 021397          106 LNISAGDHVLDLCAA--PGAKLCMILDII-GDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus       106 l~~~~g~~VLDlcag--pG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~  152 (313)
                      ..+++|++||-.|+|  -|..+.+++... +  .+|+++|.++.+++.++
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G--a~Vi~~~~~~~~~~~~~  213 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAK  213 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHH
Confidence            578899999999987  344555666665 4  58999999999988765

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=82.20  E-value=3.5  Score=37.57  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=36.8

Q ss_pred             cCCCCCCEEEEECCCc-ChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          106 LNISAGDHVLDLCAAP-GAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       106 l~~~~g~~VLDlcagp-G~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .++++|++||=.|+|+ |..+.++|+.+ +  .+|+++|.++++++.++    ++|.
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~~~~~~~----~lGa  232 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAE----RLGA  232 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHH----HTTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHH----HhCC
Confidence            6788999999999853 23345666666 4  58999999999988765    4675

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=81.91  E-value=2  Score=35.38  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             hcCCCCCCEEEEECCC--cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397          105 ALNISAGDHVLDLCAA--PGAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus       105 ~l~~~~g~~VLDlcag--pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      ..++++|++||-.|++  -|..+..++...+  .+|+++|.++++++.++
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            3578899999999853  2334445555444  58999999998877654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=81.83  E-value=2.2  Score=38.66  Aligned_cols=50  Identities=24%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ...+ +|++||-.|+|+ |..+.++++.++. .+|+++|.++++++.++    ++|.
T Consensus       163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~----~~Ga  213 (348)
T 2d8a_A          163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGA-YPVIVSEPSDFRRELAK----KVGA  213 (348)
T ss_dssp             TSCC-TTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHHHHH----HHTC
T ss_pred             hcCC-CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH----HhCC
Confidence            3467 899999999854 4455666666542 27999999999888765    3565

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=80.34  E-value=2.8  Score=37.92  Aligned_cols=45  Identities=24%  Similarity=0.216  Sum_probs=33.5

Q ss_pred             cCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397          106 LNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACR  152 (313)
Q Consensus       106 l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~  152 (313)
                      .++++|++||-.|+  |.|..+.+++...+  .+|+++|.++.+++.++
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~  211 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFR  211 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHH
Confidence            46889999999998  34455555665543  58999999998886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d2b9ea1	293	c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens)	3e-07
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-06
d1ixka_	313	c.66.1.38 (A:) Hypothetical methyltransferase PH13	8e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-05
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	3e-05

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 27/196 (13%)

Query: 39  PRYIR---LKT-----------------GNEADLEEIEAELKCKLEKVVWLSGFYSLPPD 78
           PR++R   LKT                 G  + L+++ A           +      P  
Sbjct: 3   PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62

Query: 79  IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
             +     Y+ G +   D AS      L+   G HV+D CAAPG K   +  ++ + G +
Sbjct: 63  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122

Query: 139 TGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVL 192
              D+   RLA+  TLL +  +   C L   D    S +  R      +LLDP    S +
Sbjct: 123 FAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM 181

Query: 193 QEKDDTFREWTSRIPW 208
             +        +  P 
Sbjct: 182 PSRQLEEPGAGTPSPV 197

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 3/100 (3%)

Query: 71  GFYSLPPDIKIAT-SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            F             +      I  IDA+    +    +  G  +L++    G     IL
Sbjct: 47  SFIVSDFSPMYFGRVIRRNTQIISEIDASY--IIMRCGLRPGMDILEVGVGSGNMSSYIL 104

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
             +   G++T V+     L      L ++      R   +
Sbjct: 105 YALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 144

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 17/221 (7%)

Query: 14  LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
             E  +   +               PR  R   LK   +  ++ +  +   + ++V W  
Sbjct: 26  WGERAIRIAEAMEKPL---------PRCFRVNTLKISVQDLVKRLNKK-GFQFKRVPWAK 75

Query: 71  -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            GF        I ++  +  G IY  +A+S     AL+   G+ V D+ AAPG K   + 
Sbjct: 76  EGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 135

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDPGS 187
            ++ + G +   DV  +RL   R  L +  + +      +      L     ++LLD   
Sbjct: 136 QLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA-P 194

Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR 228
           C        +  R+W   +   +  + ++ R       +++
Sbjct: 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK 235

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 71  GFYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
            +    P ++     M       +  D      +S ++I+ GD VL+  +  G     + 
Sbjct: 60  QYMLRRPALEDYVVLMKRGTAITFPKDI--NMILSMMDINPGDTVLEAGSGSGGMSLFLS 117

Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163
             +G  G V   +V +      +   + +    +
Sbjct: 118 KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 97  AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
           AA    +    I  G  VL L  A G     + DI+G  G + G++ +   L     +++
Sbjct: 60  AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119

Query: 157 KY 158
           + 
Sbjct: 120 ER 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	100.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	100.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.71
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.69
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.63
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.56
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.5
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.49
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.48
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.48
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.47
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.45
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.42
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.39
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.39
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.38
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.34
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.34
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.29
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.29
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.29
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.28
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.28
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.28
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.26
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.26
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.25
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.24
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.22
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.2
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.2
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.18
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.18
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.17
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.16
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.13
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.12
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.1
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.08
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.06
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.06
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.06
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.04
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.01
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.98
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.96
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.96
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.96
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.94
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.89
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.87
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.87
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.87
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.86
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.82
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.82
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.81
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.81
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.76
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.72
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.67
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.66
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.65
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.65
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.64
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.64
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.64
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.63
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.61
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.46
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.46
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.39
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.37
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.36
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.33
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.32
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.29
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.25
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.02
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.01
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.96
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.84
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.73
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.43
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.41
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.41
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.39
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.27
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.91
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.89
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.76
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.76
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.63
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.51
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.09
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.76
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.64
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.25
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.22
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.21
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.99
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.91
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.83
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.72
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.31
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.27
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.22
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.85
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.85
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.63
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.51
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.57
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.56
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.53
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.41
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.2
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.9
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.7
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.4
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.2
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	84.8
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.98

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-50  Score=374.18  Aligned_cols=271  Identities=18%  Similarity=0.251  Sum_probs=217.6

Q ss_pred             cCCCChHHHHH-HHHHcCCChh-hhhh-cCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-CCCCc
Q 021397           10 SKLPLPEAFLD-FLKENGLDPS-VYSA-ADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP-DIKIA   82 (313)
Q Consensus        10 ~~ys~P~w~~~-~~~~~g~~~~-~~~~-~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~-~~~~~   82 (313)
                      .+|+||+||++ |++.+|++.. +.++ ++++|+++|||+   +.+++++.|+++ |+.+++++|+|+++.+.. ..++.
T Consensus        10 ~~~~~p~wl~~~~~~~~Gee~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~l~   88 (313)
T d1ixka_          10 LRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKK-GFQFKRVPWAKEGFCLTREPFSIT   88 (313)
T ss_dssp             HHTTCCHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHT-TCEEEEETTEEEEEEEEECSSCGG
T ss_pred             HHcCCCHHHHHHHHHHhhHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhC-CCceEECCCCcchhhhccCCCccc
Confidence            58999999999 8999996532 4444 478899999986   568889999887 999999999999998864 45789


Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      .++.|++|++++||.+||+++.++++++|++|||+||||||||+++++.+++.+.|+|+|+++.|++.++++++++|+. 
T Consensus        89 ~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-  167 (313)
T d1ixka_          89 STPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-  167 (313)
T ss_dssp             GSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-
T ss_pred             cCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             cEEEEecCCC-------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcce
Q 021397          163 RCRLFVADGT-------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPEL  234 (313)
Q Consensus       163 ~v~~~~~D~~-------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El  234 (313)
                      ++.++..|+.       .||.|++| ||    |++|+++++|++  .|.....+......+|.+++.++.+++++     
T Consensus       168 ~i~~~~~d~~~~~~~~~~fD~ILvDaPC----Sg~G~~~r~p~~--~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~-----  236 (313)
T d1ixka_         168 NVILFHSSSLHIGELNVEFDKILLDAPC----TGSGTIHKNPER--KWNRTMDDIKFCQGLQMRLLEKGLEVLKP-----  236 (313)
T ss_dssp             SEEEESSCGGGGGGGCCCEEEEEEECCT----TSTTTCC----------CCHHHHHHHHHHHHHHHHHHHHHEEE-----
T ss_pred             ccccccccccccccccccccEEEEcccc----ccCCceeeccch--hhhhhhhHHHHHHHHHHHHHHhhhheeCC-----
Confidence            6888888874       46778889 88    999999999998  45555566667789999999999999866     


Q ss_pred             eEeecCCcEEEEEcCCCCCcccchhhhhhcccceeeccccccCCCcccccccccccccccccccCCcccc
Q 021397          235 IFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERT  304 (313)
Q Consensus       235 ~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~l~d~e~~~~~~~~~~~~~~~w~~~~~~~~~~~~~r~  304 (313)
                            ||+||||||| ++|+|||+||.+.+++.    ++....--...+++..|.+..+......+.|+
T Consensus       237 ------gG~lVYsTCS-l~~eENE~VV~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  295 (313)
T d1ixka_         237 ------GGILVYSTCS-LEPEENEFVIQWALDNF----DVELLPLKYGEPALTNPFGIELSEEIKNARRL  295 (313)
T ss_dssp             ------EEEEEEEESC-CCGGGTHHHHHHHHHHS----SEEEECCCSSEECCSSGGGCCCCGGGGGSEEE
T ss_pred             ------CcEEEEeecc-CChHhHHHHHHHHHhcC----CCEEeecccCCccccCccccccccccCCcEEE
Confidence                  9999999999 99999999997766542    11110101123445555555555555444443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.2e-49  Score=357.71  Aligned_cols=233  Identities=17%  Similarity=0.164  Sum_probs=204.3

Q ss_pred             ChHHHHH-HHHHcCCChh-hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCCCCcccccc
Q 021397           14 LPEAFLD-FLKENGLDPS-VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAY   87 (313)
Q Consensus        14 ~P~w~~~-~~~~~g~~~~-~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~   87 (313)
                      ||+||++ |.+.||++.. +.. .+.++|+++|+|+   +.+++.+.|.+. |+...+.+++|+++.++....+..++.|
T Consensus         1 HP~WLv~~~~~~~gee~~~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~-gi~~~~~~~~p~~l~l~~~~~l~~~~~~   79 (284)
T d1sqga2           1 HPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEA-GMKGFPHADYPDAVRLETPAPVHALPGF   79 (284)
T ss_dssp             SCHHHHHHHHHHCTTTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHT-TCCEECCTTCTTEEEESSCCCGGGSTTG
T ss_pred             CcHHHHHHHHHHCHHHHHHHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhc-CCceeecCCCCccceeccccchhhChhh
Confidence            7999999 8889987633 444 4589999999996   567888888876 9999999999999999987889999999


Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ++|++++||.+||+++.++++++|++|||+||||||||++|++.+.+ +.|+|+|+++.|++.++++++++|+. ++.+.
T Consensus        80 ~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~  157 (284)
T d1sqga2          80 EDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQ  157 (284)
T ss_dssp             GGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEEE
T ss_pred             hccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhccccc-ceeee
Confidence            99999999999999999999999999999999999999999998764 89999999999999999999999996 56666


Q ss_pred             ecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEee
Q 021397          168 VADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYG  238 (313)
Q Consensus       168 ~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~  238 (313)
                      ..|..        .||.|++| ||    |++|+++++|++...|+  ..+......+|.++|.++.+++++         
T Consensus       158 ~~~~~~~~~~~~~~fd~IL~DaPC----Sg~G~~rr~p~~~~~~~--~~~~~~l~~lQ~~iL~~a~~~lk~---------  222 (284)
T d1sqga2         158 GDGRYPSQWCGEQQFDRILLDAPC----SATGVIRRHPDIKWLRR--DRDIPELAQLQSEILDAIWPHLKT---------  222 (284)
T ss_dssp             CCTTCTHHHHTTCCEEEEEEECCC----CCGGGTTTCTTHHHHCC--TTHHHHHHHHHHHHHHHHGGGEEE---------
T ss_pred             ccccccchhcccccccEEEEeccc----cccCccccccchhhccc--cchhhHHHHHHHHHHHHHHHhcCC---------
Confidence            55542        48889999 99    99999999999855554  445556788999999999999866         


Q ss_pred             cCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397          239 RRSGIVGLTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       239 k~gG~lvysTcs~~~p~Ene~vv~~~~~~  267 (313)
                        ||+||||||| ++|+|||+||...+++
T Consensus       223 --gG~lvYsTCS-~~~~ENE~vv~~~l~~  248 (284)
T d1sqga2         223 --GGTLVYATCS-VLPEENSLQIKAFLQR  248 (284)
T ss_dssp             --EEEEEEEESC-CCGGGTHHHHHHHHHH
T ss_pred             --CceEEEeeec-CchhhCHHHHHHHHHh
Confidence              9999999999 9999999999766554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-43  Score=320.69  Aligned_cols=211  Identities=18%  Similarity=0.236  Sum_probs=170.0

Q ss_pred             CCeEEEecC---ChHHHHHHHHHhcCCceEE------------------eccCCCcEEeCCCCCCcccccccCCeEEEec
Q 021397           38 TPRYIRLKT---GNEADLEEIEAELKCKLEK------------------VVWLSGFYSLPPDIKIATSMAYKQGKIYGID   96 (313)
Q Consensus        38 ~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~~~G~~~~Qd   96 (313)
                      .|+|+|||+   +.+++.+.|+++ |+.+++                  .+++|+.+.++....+..+++|++|++++||
T Consensus         2 lP~~~RVNtlk~~~ee~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD   80 (293)
T d2b9ea1           2 LPRFVRVNTLKTCSDDVVDYFKRQ-GFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQD   80 (293)
T ss_dssp             CCEEEEECTTTCCHHHHHHHHHHT-TCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHc-CCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcC
Confidence            589999987   578888889876 775543                  4678899999887889999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC---
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---  173 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~---  173 (313)
                      .+|++++.++++++|++|||+||||||||+++|+++++.+.|+|+|+++.|++.++++++++|+. ++.+...|+..   
T Consensus        81 ~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~  159 (293)
T d2b9ea1          81 RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSP  159 (293)
T ss_dssp             TGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCT
T ss_pred             CcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcc
Confidence            99999999999999999999999999999999999998899999999999999999999999996 79999998743   


Q ss_pred             -------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEE
Q 021397          174 -------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG  245 (313)
Q Consensus       174 -------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lv  245 (313)
                             ||.|++| ||    |++|+++++|+....|+.+........++|.+++.++.. ++           +||+||
T Consensus       160 ~~~~~~~fD~VL~DaPC----Sg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~-----------~gG~lv  223 (293)
T d2b9ea1         160 SDPRYHEVHYILLDPSC----SGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FP-----------SLQRLV  223 (293)
T ss_dssp             TCGGGTTEEEEEECCCC----CC------------------CCHHHHHHHHHHHHHHHTT-CT-----------TCCEEE
T ss_pred             cccccceeeEEeecCcc----cchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cc-----------cccEEE
Confidence                   5678888 88    999999999998655665655566778889888888774 44           499999


Q ss_pred             EEcCCCCCcccchhhhhhcccc
Q 021397          246 LTKEEIYQSVCNSEVSSSGYDK  267 (313)
Q Consensus       246 ysTcs~~~p~Ene~vv~~~~~~  267 (313)
                      ||||| ++|+|||+||...+++
T Consensus       224 YsTCS-l~~~ENe~vV~~~L~~  244 (293)
T d2b9ea1         224 YSTCS-LCQEENEDVVRDALQQ  244 (293)
T ss_dssp             EEESC-CCGGGTHHHHHHHHTT
T ss_pred             Eeecc-CChhHhHHHHHHHHHh
Confidence            99999 9999999999666554

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.4e-17  Score=152.38  Aligned_cols=141  Identities=16%  Similarity=0.099  Sum_probs=107.5

Q ss_pred             ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 021397           83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD  162 (313)
Q Consensus        83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  162 (313)
                      -...+++|+|..|.....++    ...+|++|||+|||+|++++++|..   ..+|+++|+|+.+++.+++|++++|+. 
T Consensus       122 l~~~~~tG~flDqr~~r~~~----~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-  193 (318)
T d1wxxa2         122 LRAGQKTGAYLDQRENRLYM----ERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-  193 (318)
T ss_dssp             CSTTSCCCCCGGGHHHHHHG----GGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-
T ss_pred             chhccccccchhhhhhHHHH----HHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-
Confidence            34678999999999876432    2346999999999999999998853   368999999999999999999999996 


Q ss_pred             cEEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397          163 RCRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE  230 (313)
Q Consensus       163 ~v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~  230 (313)
                      +++++++|+.           .||.|.+| ||+.    .+               ..........+.+++..+.++++| 
T Consensus       194 ~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~----~~---------------~~~~~~~~~~~~~l~~~a~~lLkp-  253 (318)
T d1wxxa2         194 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA----KG---------------KKDVERAYRAYKEVNLRAIKLLKE-  253 (318)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC----CS---------------TTSHHHHHHHHHHHHHHHHHTEEE-
T ss_pred             CcceeeccHHHHhhhhHhhhcCCCEEEEcCCccc----cc---------------hHHHHHHHHHHHHHHHHHHHHcCC-
Confidence            7999999973           57888888 6622    11               112233445567777888888766 


Q ss_pred             CcceeEeecCCcEEEEEcCCC-CCcccchhhh
Q 021397          231 HPELIFYGRRSGIVGLTKEEI-YQSVCNSEVS  261 (313)
Q Consensus       231 ~~El~~~~k~gG~lvysTcs~-~~p~Ene~vv  261 (313)
                                ||+|+|+|||- +.+++.++++
T Consensus       254 ----------GG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         254 ----------GGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             ----------EEEEEEEECCTTSCHHHHHHHH
T ss_pred             ----------CCEEEEEeCCcccCHHHHHHHH
Confidence                      99999999982 3344555555

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=3.8e-17  Score=149.88  Aligned_cols=133  Identities=17%  Similarity=0.134  Sum_probs=107.4

Q ss_pred             cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      ...++.|++..|.....++...+  ++|++|||+|||+|+++++++..  +..+|+++|+|+.+++.+++|++.+|+.++
T Consensus       121 ~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~  196 (324)
T d2as0a2         121 MRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDR  196 (324)
T ss_dssp             SSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred             ccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCcc
Confidence            45779999999999988886654  68999999999999999998864  345899999999999999999999999778


Q ss_pred             EEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccC
Q 021397          164 CRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH  231 (313)
Q Consensus       164 v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~  231 (313)
                      ++++++|+.           .||.|.+| |++.                   ..........+.+.+++..+.++++|  
T Consensus       197 ~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~-------------------~~~~~~~~~~~~y~~l~~~a~~ll~p--  255 (324)
T d2as0a2         197 MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFV-------------------QHEKDLKAGLRAYFNVNFAGLNLVKD--  255 (324)
T ss_dssp             EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC-------------------SSGGGHHHHHHHHHHHHHHHHTTEEE--
T ss_pred             ceeeechhhhhhHHHHhccCCCCchhcCCcccc-------------------CCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence            999999963           57888888 5521                   11222333455667777888888765  


Q ss_pred             cceeEeecCCcEEEEEcCC
Q 021397          232 PELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       232 ~El~~~~k~gG~lvysTcs  250 (313)
                               ||+|+|+|||
T Consensus       256 ---------GG~lv~~s~s  265 (324)
T d2as0a2         256 ---------GGILVTCSCS  265 (324)
T ss_dssp             ---------EEEEEEEECC
T ss_pred             ---------CcEEEEEeCC
Confidence                     9999999999

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=3.1e-16  Score=143.17  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=101.1

Q ss_pred             cccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397           82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus        82 ~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .-...+++|+|..|......++..  ..+|.+|||+|||+|++|++++..  +...|+++|+|+.+++.+++|++.+|+.
T Consensus       118 dl~~g~ktGlflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~  193 (317)
T d2b78a2         118 FLNDGLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLD  193 (317)
T ss_dssp             CSSSSSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCC
T ss_pred             EcccccccCCcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhccc
Confidence            344678999999998875544433  357999999999999999987753  3458999999999999999999999984


Q ss_pred             -CcEEEEecCC-----------CCCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397          162 -DRCRLFVADG-----------TTFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR  228 (313)
Q Consensus       162 -~~v~~~~~D~-----------~~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r  228 (313)
                       .+++++++|+           ..||.|++| |+|.         ++++          ......+.+.+++..+.++++
T Consensus       194 ~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~---------~~~~----------~~~~~~~~~~~L~~~a~~ll~  254 (317)
T d2b78a2         194 MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA---------RNKK----------EVFSVSKDYHKLIRQGLEILS  254 (317)
T ss_dssp             CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------------CCCCHHHHHHHHHHHHHHTEE
T ss_pred             CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhc---------cchh----------HHHHHHHHHHHHHHHHHHHcC
Confidence             4799999997           257888888 5532         1111          111223345567777888876


Q ss_pred             ccCcceeEeecCCcEEEEEcCC
Q 021397          229 SEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       229 ~~~~El~~~~k~gG~lvysTcs  250 (313)
                      |           ||.|+|||||
T Consensus       255 p-----------gG~l~~~scs  265 (317)
T d2b78a2         255 E-----------NGLIIASTNA  265 (317)
T ss_dssp             E-----------EEEEEEEECC
T ss_pred             C-----------CCEEEEEeCC
Confidence            5           9999999998

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.9e-14  Score=126.01  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=83.1

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ++.....++..+.++||++|||+|||+|+.+..+++..+  ..|+|+|+|+.+++.++++++..|+.++++++.+|+..+
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            455566788999999999999999999999999998753  689999999999999999999999988899999999875


Q ss_pred             CccccccccCccccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      .   .|..||.+.|.+++.+-++
T Consensus        96 ~---~~~~fD~v~~~~~~~~~~d  115 (245)
T d1nkva_          96 V---ANEKCDVAACVGATWIAGG  115 (245)
T ss_dssp             C---CSSCEEEEEEESCGGGTSS
T ss_pred             c---ccCceeEEEEEehhhccCC
Confidence            2   3555666688887766554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.3e-14  Score=126.00  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA  177 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v  177 (313)
                      +..+++..++++||++|||+|||+|..+..+++..   +.|+|+|+|+.|++.++++++..++. ++.++++|+..+++ 
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~-   78 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF-   78 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS-
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccccc-
Confidence            45678889999999999999999999999999863   58999999999999999999999985 79999999988764 


Q ss_pred             ccccccCccccccccccccc
Q 021397          178 PLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       178 ~~D~~l~~~s~sg~l~~~p~  197 (313)
                       -|..||.+.|.+++.+.++
T Consensus        79 -~~~~fD~v~~~~~l~~~~d   97 (234)
T d1xxla_          79 -PDDSFDIITCRYAAHHFSD   97 (234)
T ss_dssp             -CTTCEEEEEEESCGGGCSC
T ss_pred             -cccccceeeeeceeecccC
Confidence             3556666788888876655

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=1.3e-13  Score=118.73  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR  180 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D  180 (313)
                      .+.+.+++++|++|||+|||+|..|..+|+.++..+.|+++|+++.+++.+++++++.++. ++.++++|+.....  .+
T Consensus        66 ~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~--~~  142 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP--EF  142 (213)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG--GG
T ss_pred             HHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccc--cc
Confidence            3567889999999999999999999999999988899999999999999999999999986 79999999865322  12


Q ss_pred             cccCcccccccccccc
Q 021397          181 LLLDPGSCNSVLQEKD  196 (313)
Q Consensus       181 ~~l~~~s~sg~l~~~p  196 (313)
                      ..||.+.+.+.+.+-|
T Consensus       143 ~~fD~I~~~~~~~~~p  158 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVP  158 (213)
T ss_dssp             CCEEEEEECSBBSCCC
T ss_pred             cchhhhhhhccHHHhH
Confidence            3344446666555444

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.49  E-value=5.8e-14  Score=123.67  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ...-+|..|.+  .++..++++||++|||+|||+|+.|..+|+.+++.|+|+++|+++.+++.+++|+++++..+++++.
T Consensus        65 ~~qiiypkD~~--~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~  142 (250)
T d1yb2a1          65 NTQIISEIDAS--YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS  142 (250)
T ss_dssp             ------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE
T ss_pred             CCcccCHHHHH--HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEE
Confidence            34556666655  3456899999999999999999999999999988899999999999999999999998766789999


Q ss_pred             ecCCCCC
Q 021397          168 VADGTTF  174 (313)
Q Consensus       168 ~~D~~~~  174 (313)
                      .+|...+
T Consensus       143 ~~Di~~~  149 (250)
T d1yb2a1         143 RSDIADF  149 (250)
T ss_dssp             CSCTTTC
T ss_pred             Eeeeecc
Confidence            9998653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=9.5e-14  Score=123.45  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=77.3

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      +.+.-.+....+.+++..++++||++|||+|||+|+.|..+|+.+++.|+|+++|+++++++.+++|++++|+.+++.+.
T Consensus        81 ~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~  160 (266)
T d1o54a_          81 KRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK  160 (266)
T ss_dssp             CC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             cCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE
Confidence            33333444455667888999999999999999999999999999988899999999999999999999999987789998


Q ss_pred             ecCCC-CCCcccccc
Q 021397          168 VADGT-TFSLAPLRL  181 (313)
Q Consensus       168 ~~D~~-~~d~v~~D~  181 (313)
                      ..|.. .++...+|.
T Consensus       161 ~~d~~~~~~~~~~D~  175 (266)
T d1o54a_         161 VRDISEGFDEKDVDA  175 (266)
T ss_dssp             CCCGGGCCSCCSEEE
T ss_pred             eccccccccccceee
Confidence            88863 344444443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.48  E-value=3.8e-14  Score=119.30  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      .++...+.+++|++|||+|||+|..|..+|+.   .++|+|+|+++.+++.+++|++++|+.++++++++|+..
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            34445689999999999999999999999864   368999999999999999999999998799999999854

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.47  E-value=2e-13  Score=121.77  Aligned_cols=92  Identities=13%  Similarity=0.035  Sum_probs=76.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +.....+.+|++|||+|||+|+.+..+++..+  ..|+|+|+|+.+++.++++++..|+.++++++++|+..+++.  |.
T Consensus        59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~--~~  134 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--DN  134 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--TT
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccccccccccccccccccccc--cc
Confidence            33345788999999999999999999998764  589999999999999999999999988999999999887642  34


Q ss_pred             ccCccccccccccccc
Q 021397          182 LLDPGSCNSVLQEKDD  197 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~  197 (313)
                      .||.+.+..++.+-++
T Consensus       135 sfD~V~~~~~l~h~~d  150 (282)
T d2o57a1         135 SYDFIWSQDAFLHSPD  150 (282)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             ccchhhccchhhhccC
Confidence            5565677777766654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.45  E-value=1.9e-13  Score=117.68  Aligned_cols=90  Identities=11%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL  181 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~  181 (313)
                      +.+.+.++++++|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++++.+.. +++++++|+..+++  -|.
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~--~~~   80 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF--TDE   80 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS--CTT
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccccc--ccc
Confidence            456788999999999999999999999875   258999999999999999999999985 79999999988763  245


Q ss_pred             ccCccccccccccccc
Q 021397          182 LLDPGSCNSVLQEKDD  197 (313)
Q Consensus       182 ~l~~~s~sg~l~~~p~  197 (313)
                      .||.+.|..++.+-++
T Consensus        81 ~fD~v~~~~~l~~~~d   96 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPN   96 (231)
T ss_dssp             CEEEEEEESCGGGCSC
T ss_pred             ccccccccccccccCC
Confidence            6666688888876655

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=4.8e-13  Score=118.52  Aligned_cols=87  Identities=22%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CCCCcEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--ALGDRCR  165 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~~~~v~  165 (313)
                      +.+.-.+....+.++...++++||++|||+|||+|+.|.+||+.+++.|+|+++|+++++++.+++|++++  +..+++.
T Consensus        74 ~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~  153 (264)
T d1i9ga_          74 PRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR  153 (264)
T ss_dssp             CSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEE
T ss_pred             cCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEE
Confidence            33333334444557788999999999999999999999999999998899999999999999999999986  3345899


Q ss_pred             EEecCCCCC
Q 021397          166 LFVADGTTF  174 (313)
Q Consensus       166 ~~~~D~~~~  174 (313)
                      ++++|+...
T Consensus       154 ~~~~d~~~~  162 (264)
T d1i9ga_         154 LVVSDLADS  162 (264)
T ss_dssp             EECSCGGGC
T ss_pred             EEecccccc
Confidence            999998654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=5.9e-13  Score=120.24  Aligned_cols=100  Identities=14%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             CcccccccCCeEEEecHHHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397           81 IATSMAYKQGKIYGIDAASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus        81 ~~~~~~~~~G~~~~Qd~ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      +.-...++.|+|..|...-..+...+. ..+|.+|||+|||+|+++++++..   ..+|++||.|+.+++.+++|++.+|
T Consensus       102 v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~  178 (309)
T d2igta1         102 GRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAG  178 (309)
T ss_dssp             EECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHT
T ss_pred             EeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhc
Confidence            345678899999999999887776543 456889999999999999998863   3589999999999999999999999


Q ss_pred             CCC-cEEEEecCC-----------CCCCccccc-ccc
Q 021397          160 LGD-RCRLFVADG-----------TTFSLAPLR-LLL  183 (313)
Q Consensus       160 ~~~-~v~~~~~D~-----------~~~d~v~~D-~~l  183 (313)
                      +.+ +++++++|+           ..||.|++| |.|
T Consensus       179 ~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f  215 (309)
T d2igta1         179 LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKF  215 (309)
T ss_dssp             CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSE
T ss_pred             ccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcc
Confidence            864 589999997           358888889 653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.39  E-value=6.8e-13  Score=113.76  Aligned_cols=68  Identities=19%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..+.++||++|||+|||+|+.+.++++..++ ++|+|+|+|+.|++.+++++++.+   |+.++.+|+...+
T Consensus        50 ~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~  117 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW  117 (209)
T ss_dssp             CCCCCCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG
T ss_pred             ccCCCCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc
Confidence            3478999999999999999999999999864 799999999999999999988864   6999999987644

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-12  Score=118.04  Aligned_cols=82  Identities=17%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC----------C
Q 021397           91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA----------L  160 (313)
Q Consensus        91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----------~  160 (313)
                      -+|..|.  .+++..++++||++|||+|||+|+.|.+||+.+++.|+|+++|+++.+++.+++|+++++          .
T Consensus        81 iiypkD~--~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~  158 (324)
T d2b25a1          81 ITFPKDI--NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW  158 (324)
T ss_dssp             CCCHHHH--HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred             ccccccH--HHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            3555554  456678999999999999999999999999999988999999999999999999999763          3


Q ss_pred             CCcEEEEecCCCCC
Q 021397          161 GDRCRLFVADGTTF  174 (313)
Q Consensus       161 ~~~v~~~~~D~~~~  174 (313)
                      .+|+.+.++|...+
T Consensus       159 ~~nv~~~~~di~~~  172 (324)
T d2b25a1         159 PDNVDFIHKDISGA  172 (324)
T ss_dssp             CCCEEEEESCTTCC
T ss_pred             ccceeEEecchhhc
Confidence            35799999998654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.1e-12  Score=110.75  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=77.2

Q ss_pred             CeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC----Cc
Q 021397           90 GKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG----DR  163 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----~~  163 (313)
                      |....|-.-...+.++|  +++||++|||+|||+|..|..+|++.+..++|+++|+++.+++.+++++++.++.    ++
T Consensus        54 ~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~  133 (224)
T d1i1na_          54 QATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR  133 (224)
T ss_dssp             TEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred             hhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence            44433322223445556  7899999999999999999999999988899999999999999999999987652    36


Q ss_pred             EEEEecCCCCCCccccccccCcccccccccccc
Q 021397          164 CRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       164 v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +.++.+|+.....  -+..||.+.+.+.+.+-|
T Consensus       134 ~~~~~gD~~~~~~--~~~~fD~I~~~~~~~~ip  164 (224)
T d1i1na_         134 VQLVVGDGRMGYA--EEAPYDAIHVGAAAPVVP  164 (224)
T ss_dssp             EEEEESCGGGCCG--GGCCEEEEEECSBBSSCC
T ss_pred             eEEEEeecccccc--hhhhhhhhhhhcchhhcC
Confidence            8999999864322  123344445566554444

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.1e-12  Score=111.95  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=58.9

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +.++||++|||+|||+|+.+.++|+.++++|.|+|+|+++.+++.+++++++.+   ++..+..|+...
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~  134 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKP  134 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCG
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCc
Confidence            568899999999999999999999999988999999999999999999886654   577888888653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.2e-11  Score=110.62  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |+.--..++..++++||++|||+|||.|+.+.++|+..+  .+|+|+++|+..++.+++++++.|+.+++++..+|...+
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  124 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence            344446688889999999999999999999999999875  799999999999999999999999988999999998776


Q ss_pred             CccccccccCcccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +. .+|.+    .+.+++.+-+
T Consensus       125 ~~-~fD~i----~si~~~eh~~  141 (285)
T d1kpga_         125 DE-PVDRI----VSIGAFEHFG  141 (285)
T ss_dssp             CC-CCSEE----EEESCGGGTC
T ss_pred             cc-cccce----eeehhhhhcC
Confidence            53 34433    6667665543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=8.4e-12  Score=107.34  Aligned_cols=91  Identities=19%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      .+.++...  .+++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.++++++..+...++.+..+|+..++.
T Consensus        29 i~~~~~~~--~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~  106 (225)
T d1im8a_          29 IGMLAERF--VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  106 (225)
T ss_dssp             HHHHHHHH--CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC
T ss_pred             HHHHHHHh--cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc
Confidence            33444444  46889999999999999999998753 3469999999999999999999988877778889999877765


Q ss_pred             cccccccCcccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQE  194 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~  194 (313)
                      -..|-    +.|+.+++.
T Consensus       107 ~~~d~----i~~~~~l~~  120 (225)
T d1im8a_         107 KNASM----VILNFTLQF  120 (225)
T ss_dssp             CSEEE----EEEESCGGG
T ss_pred             cccee----eEEeeeccc
Confidence            33332    255555543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.4e-11  Score=109.99  Aligned_cols=95  Identities=14%  Similarity=0.212  Sum_probs=77.0

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |...-..++..++++||++|||+|||.|+.+.++++..+  ..|+|+|+|+.+++.+++++++.|+..++.+...|...+
T Consensus        37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  114 (280)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence            333335577778999999999999999999999998875  589999999999999999999999987888888887665


Q ss_pred             CccccccccCcccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      +.     .||.+.+.+++.+-+
T Consensus       115 ~~-----~fD~i~si~~~eh~~  131 (280)
T d2fk8a1         115 AE-----PVDRIVSIEAFEHFG  131 (280)
T ss_dssp             CC-----CCSEEEEESCGGGTC
T ss_pred             cc-----chhhhhHhhHHHHhh
Confidence            42     344447777776654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.28  E-value=1.4e-11  Score=103.86  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=66.8

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRLFVADGTT  173 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-~v~~~~~D~~~  173 (313)
                      |.++++++..+.+.++++|||+|||+|..+..+++..   ..|+++|+|+.+++.+++|++.+++.+ +++++.+|...
T Consensus        38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~  113 (194)
T d1dusa_          38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh
Confidence            7788999999999999999999999999999998742   589999999999999999999998863 58999999753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=1.9e-11  Score=109.68  Aligned_cols=96  Identities=16%  Similarity=0.167  Sum_probs=79.6

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      |..--..++..+++++|++|||+|||.|+.+.++|+..+  ..|+|+++|+..++.++++++..|+.+++.+...|...+
T Consensus        46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~  123 (291)
T d1kpia_          46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  123 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence            333345577889999999999999999999999998875  689999999999999999999999988888888886433


Q ss_pred             CccccccccCccccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                           |..||.+.+.+++.+-++
T Consensus       124 -----~~~fD~i~sie~~eH~~~  141 (291)
T d1kpia_         124 -----DEPVDRIVSLGAFEHFAD  141 (291)
T ss_dssp             -----CCCCSEEEEESCGGGTTC
T ss_pred             -----ccccceEeechhHHhcch
Confidence                 334555588888877765

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=1.2e-11  Score=105.28  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ++++++|||+|||+|..+..+++.   ...|+|+|+|+.|++.+++++...+.  ++..+.+|+..++.  .|..||.+.
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~--~~~~fD~I~  107 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF--EDKTFDYVI  107 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS--CTTCEEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccccc--cCcCceEEE
Confidence            467889999999999999999974   36899999999999999999988886  57889999988663  245566667


Q ss_pred             cccccccc
Q 021397          188 CNSVLQEK  195 (313)
Q Consensus       188 ~sg~l~~~  195 (313)
                      |.+++.+-
T Consensus       108 ~~~~l~~~  115 (226)
T d1ve3a1         108 FIDSIVHF  115 (226)
T ss_dssp             EESCGGGC
T ss_pred             EecchhhC
Confidence            77777553

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=2e-11  Score=106.00  Aligned_cols=77  Identities=17%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCc
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP  185 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~  185 (313)
                      ....++.+|||+|||+|..+..+++.   ...|+|+|+|+.|++.++++++..++  +++++++|+++++.   +..||.
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~---~~~fD~  108 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF---KNEFDA  108 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC---CSCEEE
T ss_pred             hcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhccc---ccccch
Confidence            35667789999999999999999984   25899999999999999999999887  69999999998764   223555


Q ss_pred             ccccc
Q 021397          186 GSCNS  190 (313)
Q Consensus       186 ~s~sg  190 (313)
                      +.|.+
T Consensus       109 I~~~~  113 (251)
T d1wzna1         109 VTMFF  113 (251)
T ss_dssp             EEECS
T ss_pred             Hhhhh
Confidence            56654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.26  E-value=2.8e-11  Score=102.03  Aligned_cols=107  Identities=15%  Similarity=0.027  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..++++   ..+|+|+|+|+.+++.++++++..++. ++++...|+..+..   |..||.+.|.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~~fD~I~~~  102 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF---DGEYDFILST  102 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC---CCCEEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc---cccccEEEEe
Confidence            3459999999999999999985   358999999999999999999999986 79999999877653   4556666777


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                      .++.+.|..  .              ..+++....++++           |||+++..+..
T Consensus       103 ~~~~~~~~~--~--------------~~~~l~~~~~~L~-----------pgG~~~~~~~~  136 (198)
T d2i6ga1         103 VVMMFLEAQ--T--------------IPGLIANMQRCTK-----------PGGYNLIVAAM  136 (198)
T ss_dssp             SCGGGSCTT--H--------------HHHHHHHHHHTEE-----------EEEEEEEEEEB
T ss_pred             eeeecCCHH--H--------------HHHHHHHHHHHcC-----------CCcEEEEEEec
Confidence            777654431  0              1123344455554           49999888765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.25  E-value=2.2e-11  Score=106.57  Aligned_cols=86  Identities=21%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      .++|.+|||+|||+|+.+..+++.  +.+.|+|+|+|+.+++.|+++.+..+...++.+.++|+...+.. .+..||.++
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~   98 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVIS   98 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEE
Confidence            468899999999999999988875  23589999999999999999988887766899999998654321 234566668


Q ss_pred             ccccccccc
Q 021397          188 CNSVLQEKD  196 (313)
Q Consensus       188 ~sg~l~~~p  196 (313)
                      |.+++++..
T Consensus        99 ~~~~l~~~~  107 (252)
T d1ri5a_          99 SQFSFHYAF  107 (252)
T ss_dssp             EESCGGGGG
T ss_pred             EcceeeecC
Confidence            888776543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.24  E-value=1.1e-11  Score=110.56  Aligned_cols=94  Identities=19%  Similarity=0.265  Sum_probs=76.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      +.++-.+..+.++.+|||+|||+|..+..+++..+..++|+|+|+|+.+++.++++++..+.  ++++.++|+..++.  
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~--   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL--   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC--
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc--
Confidence            33444445677889999999999999999999877667999999999999999999988886  69999999987653  


Q ss_pred             cccccCccccccccccccc
Q 021397          179 LRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~p~  197 (313)
                       +..||.+.|.+++.+-++
T Consensus        92 -~~~fD~v~~~~~l~~~~d  109 (281)
T d2gh1a1          92 -NDKYDIAICHAFLLHMTT  109 (281)
T ss_dssp             -SSCEEEEEEESCGGGCSS
T ss_pred             -cCCceEEEEehhhhcCCC
Confidence             324666688888876554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.5e-11  Score=103.90  Aligned_cols=69  Identities=20%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +..++.+++|+.|||+|||+||.|.++++..+ .++|+|+|.++.+++.++++++.++.  ++.+++++...
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~--r~~~~~~~f~~   83 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSD--RVSLFKVSYRE   83 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTT--TEEEEECCGGG
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccc--cccchhHHHhh
Confidence            46778999999999999999999999999986 48999999999999999999988874  79999998754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.20  E-value=4e-11  Score=102.90  Aligned_cols=105  Identities=11%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF  167 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~  167 (313)
                      ..|....+-.-.....++|++++|++|||+|||+|+.|..+|++.+  +.|+++|+++.+++.++++++++|+. |+.++
T Consensus        56 ~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~  132 (215)
T d1jg1a_          56 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHVI  132 (215)
T ss_dssp             STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             chhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCc-eeEEE
Confidence            3455544433335567889999999999999999999999999875  57999999999999999999999986 89999


Q ss_pred             ecCCCCCCccccccccCccccccccccccc
Q 021397          168 VADGTTFSLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       168 ~~D~~~~d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      ++|+..-..  .+.-||.+.+.+.+..-|+
T Consensus       133 ~gd~~~g~~--~~~pfD~Iiv~~a~~~ip~  160 (215)
T d1jg1a_         133 LGDGSKGFP--PKAPYDVIIVTAGAPKIPE  160 (215)
T ss_dssp             ESCGGGCCG--GGCCEEEEEECSBBSSCCH
T ss_pred             ECccccCCc--ccCcceeEEeecccccCCH
Confidence            999864211  1122333355555555554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.20  E-value=2.8e-11  Score=105.26  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN  189 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s  189 (313)
                      ++.+|||+|||+|..+..+++.   ...|+|+|+|+.|++.|++++...++  +++++++|+..++.   +..||.+.|.
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~---~~~fD~i~~~  108 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI---NRKFDLITCC  108 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC---SCCEEEEEEC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc---ccccccccee
Confidence            4579999999999999999985   25899999999999999999988887  69999999988763   3345544554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=3.5e-11  Score=106.23  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ..++..  +++|++|||+|||+|++++.+|+. + .++|+|+|+|+.+++.+++|++.+|+.++++++++|+..+.
T Consensus        99 ~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~  170 (260)
T d2frna1          99 VRMAKV--AKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP  170 (260)
T ss_dssp             HHHHHH--CCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             HHHHhh--cCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc
Confidence            334444  478999999999999999999986 3 36899999999999999999999999888999999997654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.18  E-value=4.8e-11  Score=103.49  Aligned_cols=67  Identities=16%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .+.++||++|||+|||+|..+.++|+..+ .+.|+|+|+|+.|++.+++++++.+   ++..+.+|+...+
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~  135 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGG
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCc
Confidence            34588999999999999999999999754 5899999999999999998876543   6788888887654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.1e-11  Score=104.58  Aligned_cols=86  Identities=20%  Similarity=0.072  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG  186 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~  186 (313)
                      ...++.+|||+|||+|..+..+++..  ..+|+|+|+|+.|++.++++++..+.. +++++++|+..++.  .+..||.+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~--~~~~fD~I  131 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP--EPDSYDVI  131 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC--CSSCEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-cccccccccccccc--cccccccc
Confidence            45677899999999999999886543  258999999999999999999888775 78999999988764  24455656


Q ss_pred             ccccccccccc
Q 021397          187 SCNSVLQEKDD  197 (313)
Q Consensus       187 s~sg~l~~~p~  197 (313)
                      .+.+++.+.++
T Consensus       132 ~~~~~l~h~~~  142 (222)
T d2ex4a1         132 WIQWVIGHLTD  142 (222)
T ss_dssp             EEESCGGGSCH
T ss_pred             ccccccccchh
Confidence            78888776653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1e-10  Score=103.79  Aligned_cols=123  Identities=14%  Similarity=0.081  Sum_probs=84.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCccccccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRLL  182 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~~  182 (313)
                      ..+.+|||+|||+|..++.++...++ ..|+|+|+|+.+++.+++|++++++. +++++.+|..      .||.+..+|-
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~~~~~fDlIvsNPP  184 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFAMIVSNPP  184 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCEEEEEECCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcc-cceeeecccccccCCCceeEEEecch
Confidence            45678999999999999999998764 79999999999999999999999995 7999999973      4677777744


Q ss_pred             cCcccccccccccccccccccccchhH--HHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEc
Q 021397          183 LDPGSCNSVLQEKDDTFREWTSRIPWK--ERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTK  248 (313)
Q Consensus       183 l~~~s~sg~l~~~p~~~~~w~~~~~~~--~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysT  248 (313)
                      +.+..   .+...++.. .+.+...-.  ........+++..+.+.+++           ||.++...
T Consensus       185 Yi~~~---~~~~~~~v~-~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~-----------~G~l~lEi  237 (274)
T d2b3ta1         185 YIDEQ---DPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNALVS-----------GGFLLLEH  237 (274)
T ss_dssp             CBCTT---CHHHHSSGG-GSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-----------EEEEEEEC
T ss_pred             hhhhh---hhccccccc-ccchhhhcccccccchHHHHHHHHHHHhcCC-----------CCEEEEEE
Confidence            33211   111112211 233322111  12234445566667776655           99988864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=8.9e-11  Score=103.20  Aligned_cols=78  Identities=26%  Similarity=0.398  Sum_probs=61.1

Q ss_pred             cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397           86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR  163 (313)
Q Consensus        86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~  163 (313)
                      +|-+|.    -+..+++..++.  .++|++|||+|||+|..++.+++. +  .+|+|+|+|+.+++.+++|++++|+  +
T Consensus        98 aFGTG~----H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~--~  168 (254)
T d2nxca1          98 AFGTGH----HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV--R  168 (254)
T ss_dssp             ----CC----SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC--C
T ss_pred             ccCccc----cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCC--c
Confidence            355554    456666666664  689999999999999999887763 3  5899999999999999999999998  4


Q ss_pred             EEEEecCCC
Q 021397          164 CRLFVADGT  172 (313)
Q Consensus       164 v~~~~~D~~  172 (313)
                      ++++++|..
T Consensus       169 ~~~~~~d~~  177 (254)
T d2nxca1         169 PRFLEGSLE  177 (254)
T ss_dssp             CEEEESCHH
T ss_pred             eeEEecccc
Confidence            678888864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.12  E-value=6.6e-11  Score=98.22  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=46.6

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      ..|.+.||.+|||+|||+|..+..+|+.   +..|+|+|+|+.|++.++++++..+
T Consensus        14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~   66 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQP   66 (201)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCS
T ss_pred             HHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhcccc
Confidence            3467899999999999999999999986   3799999999999999998875543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.10  E-value=1.7e-10  Score=99.53  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=63.7

Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV  168 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~  168 (313)
                      .|....+-.-...+.+.|++++|++|||+|||+|+.|..||++.   ++|+++|+++..++.+++++.+.   +|+.++.
T Consensus        49 ~g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~  122 (224)
T d1vbfa_          49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY---NNIKLIL  122 (224)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC---SSEEEEE
T ss_pred             CCCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc---ccccccc
Confidence            34444433333445678999999999999999999999999873   68999999999999999887643   3799999


Q ss_pred             cCCCC
Q 021397          169 ADGTT  173 (313)
Q Consensus       169 ~D~~~  173 (313)
                      +|+..
T Consensus       123 ~d~~~  127 (224)
T d1vbfa_         123 GDGTL  127 (224)
T ss_dssp             SCGGG
T ss_pred             Cchhh
Confidence            99854

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.8e-10  Score=98.01  Aligned_cols=64  Identities=8%  Similarity=0.124  Sum_probs=57.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++-.|||+|||+|..+..+|+..+ ...++|+|+++.++..+.+++++.++. |+.++.+|+..+.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~   92 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLT   92 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHH
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhh
Confidence            345899999999999999999865 479999999999999999999999996 8999999997653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.1e-11  Score=102.43  Aligned_cols=60  Identities=8%  Similarity=-0.023  Sum_probs=51.1

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .+|++|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++++.+.  ++.++..|+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~  111 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWE  111 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHH
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhccc--cccccccccc
Confidence            578999999999999999998753  25899999999999999999877765  6788887763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=1.6e-10  Score=98.06  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC----CCccc
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT----FSLAP  178 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~----~d~v~  178 (313)
                      +...+-..|.+|||+|||+|..++.++..  +...|+|+|+++.+++.+++|++.++.  +++++.+|+..    ||.+.
T Consensus        39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~~~fD~Vi  114 (201)
T d1wy7a1          39 AYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFNSRVDIVI  114 (201)
T ss_dssp             HHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCCCCCSEEE
T ss_pred             HHhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhCCcCcEEE
Confidence            34455557899999999999999887753  335899999999999999999999887  58899999854    56666


Q ss_pred             cccc
Q 021397          179 LRLL  182 (313)
Q Consensus       179 ~D~~  182 (313)
                      .||.
T Consensus       115 ~nPP  118 (201)
T d1wy7a1         115 MNPP  118 (201)
T ss_dssp             ECCC
T ss_pred             EcCc
Confidence            6643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.06  E-value=5.2e-10  Score=95.06  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS  190 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg  190 (313)
                      +..|||+|||.|..+..+|+..++ ..++|+|+++.++..+.+++++.++. |+.++.+|+..+... +.+.    +.+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~-~~~~----~~~~  104 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDY-FEDG----EIDR  104 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGT-SCTT----CCSE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhh-ccCC----ceeh
Confidence            458999999999999999998764 78999999999999999999999996 799999999875422 2222    4444


Q ss_pred             cccccccc
Q 021397          191 VLQEKDDT  198 (313)
Q Consensus       191 ~l~~~p~~  198 (313)
                      +.-..|+.
T Consensus       105 i~i~fPdP  112 (204)
T d1yzha1         105 LYLNFSDP  112 (204)
T ss_dssp             EEEESCCC
T ss_pred             hccccccc
Confidence            44455664

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.06  E-value=9.2e-10  Score=96.19  Aligned_cols=96  Identities=22%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397           95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus        95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ++.....++..++..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|+...
T Consensus        65 ~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          65 QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP  142 (253)
T ss_dssp             TTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence            344455667778888889999999999999999999875 478999998 678999999999999988999999997542


Q ss_pred             CccccccccCcccccccccccc
Q 021397          175 SLAPLRLLLDPGSCNSVLQEKD  196 (313)
Q Consensus       175 d~v~~D~~l~~~s~sg~l~~~p  196 (313)
                      ..    +.+|.+.++.++++.+
T Consensus       143 ~~----~~~D~v~~~~vlh~~~  160 (253)
T d1tw3a2         143 LP----RKADAIILSFVLLNWP  160 (253)
T ss_dssp             CS----SCEEEEEEESCGGGSC
T ss_pred             cc----cchhheeeccccccCC
Confidence            21    2344446666665433

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=2.6e-10  Score=98.22  Aligned_cols=105  Identities=11%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             CeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhCCC-----cEEEEEcCCHHHHHHHHHHHHHc----
Q 021397           90 GKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGDS-----GSVTGVDVARHRLAACRTLLQKY----  158 (313)
Q Consensus        90 G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~~~-----~~V~avD~s~~~l~~~~~~~~~~----  158 (313)
                      |....|-.-.....++|  ++++|++|||+|||+|+.|..++++++..     ++|+++|++++.++.+++|+.+.    
T Consensus        58 ~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~  137 (223)
T d1r18a_          58 GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM  137 (223)
T ss_dssp             TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             CceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence            44433322223344555  78999999999999999999999987543     48999999999999999987654    


Q ss_pred             -CCCCcEEEEecCCCCCCccccccccCccccccccccccc
Q 021397          159 -ALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       159 -g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p~  197 (313)
                       +. +|+.++.+|+..-..  .+.-||.+.+++.+..-|+
T Consensus       138 ~~~-~nv~~~~~d~~~~~~--~~~~fD~Iiv~~a~~~~p~  174 (223)
T d1r18a_         138 LDS-GQLLIVEGDGRKGYP--PNAPYNAIHVGAAAPDTPT  174 (223)
T ss_dssp             HHH-TSEEEEESCGGGCCG--GGCSEEEEEECSCBSSCCH
T ss_pred             cCc-cEEEEEecccccccc--cccceeeEEEEeechhchH
Confidence             34 379999999864221  0122333355555544454

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.01  E-value=9.8e-10  Score=96.28  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=69.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL  179 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~  179 (313)
                      ......+...++.+|||+|||+|..|..++....  ..|+++|+|+.+++.+++++...   .+++++++|+..++..  
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~--  155 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLP--  155 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCC--
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccC--
Confidence            3344455666788999999999999999887653  48999999999999999776432   3689999999887642  


Q ss_pred             ccccCccccccccccccc
Q 021397          180 RLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       180 D~~l~~~s~sg~l~~~p~  197 (313)
                      +..||.+.|..++.+.++
T Consensus       156 ~~~fD~I~~~~vl~hl~d  173 (254)
T d1xtpa_         156 PNTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             SSCEEEEEEESCGGGSCH
T ss_pred             CCccceEEeeccccccch
Confidence            345566677887766553

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.98  E-value=3.3e-10  Score=91.74  Aligned_cols=71  Identities=21%  Similarity=0.199  Sum_probs=61.0

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCcccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~  181 (313)
                      .|.+|||+|||+|+.++.++.+  +..+|+++|.++.+++.+++|++.+++.++++++++|+.        .||.+++||
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP   91 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP   91 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEcCCccCHHHHHHHHh--CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence            6899999999999999988764  335999999999999999999999999888999999984        356666664


Q ss_pred             c
Q 021397          182 L  182 (313)
Q Consensus       182 ~  182 (313)
                      -
T Consensus        92 P   92 (152)
T d2esra1          92 P   92 (152)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=6e-10  Score=95.71  Aligned_cols=78  Identities=17%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      ..++.+|||+|||+|..+..+++.   ..+|+|+|+|+.|++.++++    +..   .++.+|+..+++  .|..||.+.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~---~~~~~~~~~l~~--~~~~fD~ii  107 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVK---NVVEAKAEDLPF--PSGAFEAVL  107 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCS---CEEECCTTSCCS--CTTCEEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----ccc---cccccccccccc--cccccccee
Confidence            346789999999999999999874   36899999999999998865    332   256788877653  245566556


Q ss_pred             ccc-ccccccc
Q 021397          188 CNS-VLQEKDD  197 (313)
Q Consensus       188 ~sg-~l~~~p~  197 (313)
                      |.+ ++++.++
T Consensus       108 ~~~~~~~~~~d  118 (246)
T d2avna1         108 ALGDVLSYVEN  118 (246)
T ss_dssp             ECSSHHHHCSC
T ss_pred             eecchhhhhhh
Confidence            544 5555454

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=7.4e-10  Score=98.71  Aligned_cols=126  Identities=17%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC---cEEEEecCCCCCCc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD---RCRLFVADGTTFSL  176 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~---~v~~~~~D~~~~d~  176 (313)
                      .++...+..+++.+|||+|||+|..+..+++.   +..|+|+|+|+.|++.|+++....+...   +..+...|....+.
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            45566677778889999999999999999985   2589999999999999999988776531   23344444433221


Q ss_pred             -cccccccCcccccc-cccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397          177 -APLRLLLDPGSCNS-VLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE  250 (313)
Q Consensus       177 -v~~D~~l~~~s~sg-~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs  250 (313)
                       ...+..|+.+.|.+ ++.+-++... + .         .-....++.+.+.+           ||||+++..+..
T Consensus       123 ~~~~~~~fd~v~~~~~~~~~~~~~~~-~-~---------~~~~~~l~~~~~~L-----------kpgG~li~~~~~  176 (292)
T d1xvaa_         123 DVPAGDGFDAVICLGNSFAHLPDSKG-D-Q---------SEHRLALKNIASMV-----------RPGGLLVIDHRN  176 (292)
T ss_dssp             HSCCTTCEEEEEECSSCGGGSCCTTS-S-S---------HHHHHHHHHHHHTE-----------EEEEEEEEEEEC
T ss_pred             ccCCCCCceEEEEecCchhhcCCccc-C-h---------HHHHHHHHHHHHHc-----------CcCcEEEEeecC
Confidence             11223455556654 4544443200 0 0         01222334445555           559999987653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4.2e-10  Score=99.39  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS  187 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s  187 (313)
                      +.++.+|||+|||+|..+..+++..+ ...++|+|+|+.+++.++++.      .++.++++|+..+++  .|..||.+.
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~--~~~sfD~v~  152 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPF--SDTSMDAII  152 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSB--CTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhccC--CCCCEEEEe
Confidence            56788999999999999999998864 479999999999999887642      268999999988764  244444444


Q ss_pred             c
Q 021397          188 C  188 (313)
Q Consensus       188 ~  188 (313)
                      +
T Consensus       153 ~  153 (268)
T d1p91a_         153 R  153 (268)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.9e-10  Score=94.46  Aligned_cols=72  Identities=14%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC----------------CCCcE
Q 021397          101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA----------------LGDRC  164 (313)
Q Consensus       101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----------------~~~~v  164 (313)
                      .+..++.+.+|.+|||+|||.|..+..+|+.   +..|+|+|+|+.+++.++++....+                ...++
T Consensus        36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  112 (229)
T d2bzga1          36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI  112 (229)
T ss_dssp             HHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence            3456677889999999999999999999985   3689999999999999987654321                11357


Q ss_pred             EEEecCCCCCC
Q 021397          165 RLFVADGTTFS  175 (313)
Q Consensus       165 ~~~~~D~~~~d  175 (313)
                      +++++|...++
T Consensus       113 ~~~~~d~~~l~  123 (229)
T d2bzga1         113 SLYCCSIFDLP  123 (229)
T ss_dssp             EEEESCGGGGG
T ss_pred             EEEEcchhhcc
Confidence            88888876544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.3e-10  Score=93.14  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---------------
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---------------  172 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---------------  172 (313)
                      .+++.+|||+|||||+|+..+++..++.+.|+++|+.+-.           .+. ++.++.+|..               
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~-~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIV-GVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCT-TEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccC-CceEeecccccchhhhhhhhhccCc
Confidence            4789999999999999999999999888999999986621           121 3444444442               


Q ss_pred             CCCccccccccC-------------------ccccccccccccc-ccccccccchhHHH--HHHHHHHHHHhhhhhcccc
Q 021397          173 TFSLAPLRLLLD-------------------PGSCNSVLQEKDD-TFREWTSRIPWKER--KRAVKARENAASKAIVRSE  230 (313)
Q Consensus       173 ~~d~v~~D~~l~-------------------~~s~sg~l~~~p~-~~~~w~~~~~~~~~--~~~~q~~~l~~~~~~~r~~  230 (313)
                      .+|.|+.|-+.+                   ...+...++.... ++|.|+......+.  ....+..+...+|.++|++
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP~aSR~~  167 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRAR  167 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECCTTSCTT
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECCCCcccC
Confidence            123333331100                   0012223333333 67778765544332  2445555566788999999


Q ss_pred             CcceeEeecC
Q 021397          231 HPELIFYGRR  240 (313)
Q Consensus       231 ~~El~~~~k~  240 (313)
                      |+|+|++|++
T Consensus       168 SsE~Ylv~~g  177 (180)
T d1ej0a_         168 SREVYIVATG  177 (180)
T ss_dssp             CCEEEEEEEE
T ss_pred             CceEEEEEec
Confidence            9999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.87  E-value=3.1e-09  Score=90.98  Aligned_cols=81  Identities=16%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCc
Q 021397          106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP  185 (313)
Q Consensus       106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~  185 (313)
                      ....++.+|||+|||+|..+..+++.   ...|+|+|+|+.+++.++++.   .  +++.++.+|+..++.   +..||.
T Consensus        16 ~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~---~--~~~~~~~~~~~~~~~---~~~fD~   84 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL---K--DGITYIHSRFEDAQL---PRRYDN   84 (225)
T ss_dssp             GGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS---C--SCEEEEESCGGGCCC---SSCEEE
T ss_pred             hhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc---c--ccccccccccccccc---cccccc
Confidence            33346779999999999999988864   257999999999999998653   2  368999999876542   445666


Q ss_pred             cccccccccccc
Q 021397          186 GSCNSVLQEKDD  197 (313)
Q Consensus       186 ~s~sg~l~~~p~  197 (313)
                      +.|.+++.+-++
T Consensus        85 I~~~~vleh~~d   96 (225)
T d2p7ia1          85 IVLTHVLEHIDD   96 (225)
T ss_dssp             EEEESCGGGCSS
T ss_pred             ccccceeEecCC
Confidence            688888876655

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.4e-09  Score=91.86  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ...+++..+.......+||++|++.|..|+.+|+.++.+|+|+++|+++...+.+++++++.|+.++++++.+|+.
T Consensus        46 ~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          46 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            3455666666556677999999999999999999998789999999999999999999999999989999999973

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.8e-09  Score=92.33  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ....+++..++......+|||+|||.|..|+.+|+.++..++|+++|+++.+++.+++++++.|+.++|+++.+|+..
T Consensus        42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            445556555555445679999999999999999998877799999999999999999999999998889999999853

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=1e-09  Score=90.62  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC---------CCCCccc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAP  178 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~---------~~~d~v~  178 (313)
                      ..+|.+|||+|||+|..++.++..   ...|+++|+|+.+++.+++|++.+++.+++....+|.         ..||.++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If  115 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence            457899999999999999887764   3589999999999999999999999975554444432         2477777


Q ss_pred             cccc
Q 021397          179 LRLL  182 (313)
Q Consensus       179 ~D~~  182 (313)
                      +||.
T Consensus       116 ~DPP  119 (171)
T d1ws6a1         116 MAPP  119 (171)
T ss_dssp             ECCC
T ss_pred             Eccc
Confidence            8865

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.82  E-value=1.4e-08  Score=88.90  Aligned_cols=91  Identities=24%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP  178 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~  178 (313)
                      +..++..++..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++++..|+.+++.++.+|....    
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~----  143 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----  143 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc----
Confidence            34455667777788999999999999999999876 479999997 789999999999999988899999987541    


Q ss_pred             cccccCccccccccccc
Q 021397          179 LRLLLDPGSCNSVLQEK  195 (313)
Q Consensus       179 ~D~~l~~~s~sg~l~~~  195 (313)
                      .++.+|.+.+..+++..
T Consensus       144 ~p~~~D~v~~~~vLh~~  160 (256)
T d1qzza2         144 LPVTADVVLLSFVLLNW  160 (256)
T ss_dssp             CSCCEEEEEEESCGGGS
T ss_pred             ccccchhhhcccccccc
Confidence            11223334555555543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=3.6e-09  Score=89.00  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=56.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC  188 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~  188 (313)
                      .++.+|||+|||+|..+..++       .++|+|+|+.+++.++++        ++.++++|+..++.  .|..||.+.|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~--~~~~fD~I~~   97 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL--KDESFDFALM   97 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS--CTTCEEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc--cccccccccc
Confidence            467799999999998877663       468999999999998863        47899999987764  2455666688


Q ss_pred             ccccccccc
Q 021397          189 NSVLQEKDD  197 (313)
Q Consensus       189 sg~l~~~p~  197 (313)
                      ..++.+.++
T Consensus        98 ~~~l~h~~d  106 (208)
T d1vlma_          98 VTTICFVDD  106 (208)
T ss_dssp             ESCGGGSSC
T ss_pred             ccccccccc
Confidence            888877665

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.81  E-value=4.2e-09  Score=87.71  Aligned_cols=81  Identities=12%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------
Q 021397          100 GAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------  172 (313)
Q Consensus       100 ~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------  172 (313)
                      ..+...|. ..+|.+|||+|||+|+.++.++.+  +...|+++|.++..++.+++|++.++..++++++++|+.      
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~  107 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  107 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhh
Confidence            33444444 347899999999999999988875  345899999999999999999999998878999999973      


Q ss_pred             -----CCCccccccc
Q 021397          173 -----TFSLAPLRLL  182 (313)
Q Consensus       173 -----~~d~v~~D~~  182 (313)
                           .||.+++||-
T Consensus       108 ~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         108 YEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHTTCCEEEEEECCC
T ss_pred             cccCCCcceEEechh
Confidence                 4777888864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.4e-09  Score=95.47  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-------CCC-CcEEEEecCC
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-------ALG-DRCRLFVADG  171 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-------g~~-~~v~~~~~D~  171 (313)
                      ..+...++++++++|||+|||.|..+.++|...+ ...++|+|+|+.+++.++++++..       |.. .+++++++|+
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            3455778899999999999999999999998765 368999999999999988876653       322 3699999999


Q ss_pred             CCCC
Q 021397          172 TTFS  175 (313)
Q Consensus       172 ~~~d  175 (313)
                      .+.+
T Consensus       220 ~~~~  223 (328)
T d1nw3a_         220 LSEE  223 (328)
T ss_dssp             TSHH
T ss_pred             cccc
Confidence            7755

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.76  E-value=8.1e-09  Score=88.90  Aligned_cols=75  Identities=9%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ..+++..++......+||++|++.|.-|+.+|+.++..|+|+++|.++...+.+++++++.|+.++|+++.+|+.
T Consensus        47 ~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~  121 (227)
T d1susa1          47 EGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL  121 (227)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHH
Confidence            345555555555667999999999999999999998889999999999999999999999999889999999983

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=8.5e-09  Score=85.78  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCcccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~  181 (313)
                      .+.+|||+|||+|..++.++.+  +...|+++|.++..++.+++|++.++.. +++++..|+.        .||.+++||
T Consensus        43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~~~~fDlIf~DP  119 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDP  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred             chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccccccccCEEEEcC
Confidence            6789999999999999988775  3358999999999999999999999885 6899999974        356667774


Q ss_pred             c
Q 021397          182 L  182 (313)
Q Consensus       182 ~  182 (313)
                      -
T Consensus       120 P  120 (183)
T d2fpoa1         120 P  120 (183)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.67  E-value=1.9e-08  Score=84.67  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             cHHHHH--HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397           96 DAASGA--AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus        96 d~ss~~--~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +.++.+  .+..++--.|.+|||+|||+|..++.++.. + ...|+++|+++.+++.+++|+.      ++.++++|+..
T Consensus        32 ~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~  103 (197)
T d1ne2a_          32 STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE  103 (197)
T ss_dssp             HHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHccc------cccEEEEehhh
Confidence            344433  344555557999999999999998776654 3 3589999999999999998852      57899999865


Q ss_pred             ----CCccccccc
Q 021397          174 ----FSLAPLRLL  182 (313)
Q Consensus       174 ----~d~v~~D~~  182 (313)
                          ||.+..||-
T Consensus       104 l~~~fD~Vi~NPP  116 (197)
T d1ne2a_         104 ISGKYDTWIMNPP  116 (197)
T ss_dssp             CCCCEEEEEECCC
T ss_pred             cCCcceEEEeCcc
Confidence                444555544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=4.7e-08  Score=88.35  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ...+|.+|||+|||+|..+..+|+. + ..+|+|+|.|+ +++.++++.+..+..++++++.+|+..++.
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~  101 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL  101 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC
Confidence            3457999999999999999888874 3 35899999996 778899999999998899999999887653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.2e-08  Score=90.33  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +..++++.++++|||++||.|.+|+.||+.   ..+|+|+|.++..++.+++|++.+|+. |++++.+|...
T Consensus       204 v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~  271 (358)
T d1uwva2         204 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEE  271 (358)
T ss_dssp             HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTS
T ss_pred             HHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhh
Confidence            455678889999999999999999999874   368999999999999999999999996 79999998754

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.1e-08  Score=88.24  Aligned_cols=90  Identities=12%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--EecCCCCCC----c
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIG-----DSGSVTGVDVARHRLAACRTLLQKYALGDRCRL--FVADGTTFS----L  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~-----~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~--~~~D~~~~d----~  176 (313)
                      .+++.+|||+|||+|..+..++..+.     ....++|+|+|+.|++.+++++++.....++.+  ...++..+.    .
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            44555899999999999998877642     124689999999999999998876543234544  333332210    1


Q ss_pred             cccccccCccccccccccccc
Q 021397          177 APLRLLLDPGSCNSVLQEKDD  197 (313)
Q Consensus       177 v~~D~~l~~~s~sg~l~~~p~  197 (313)
                      ...+..||.+.|..++.+.++
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d  138 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKD  138 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSC
T ss_pred             cCCCCceeEEEEccceecCCC
Confidence            112345666688888876655

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=7.2e-08  Score=89.48  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      +...+++++|++|||+|||.|..+.++|...+. .+|+|+|+++.+++.++++++..+
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~  264 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELK  264 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHh
Confidence            556788999999999999999999999998863 589999999999999999887643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.6e-08  Score=87.11  Aligned_cols=70  Identities=20%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ......+|.+|||+|||+|..++.+|+. + ..+|+|+|.|+.+. .++++.++.+..+++.++++|+..++.
T Consensus        29 ~~~~~~~~~~VLDiGcG~G~lsl~aa~~-G-a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~   98 (311)
T d2fyta1          29 QNPHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL   98 (311)
T ss_dssp             HCGGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             hccccCCcCEEEEECCCCCHHHHHHHHc-C-CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC
Confidence            3345668999999999999999988875 3 35899999999876 466677788877889999999987654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.6e-08  Score=85.23  Aligned_cols=73  Identities=5%  Similarity=0.044  Sum_probs=61.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-------------CCCc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-------------TFSL  176 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-------------~~d~  176 (313)
                      +..+|||+|||+|..++.++...++ .+|+|+|+|+.+++.+++|++++++.+++.++..+..             .||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            3458999999999999999998864 7999999999999999999999999988988875532             3667


Q ss_pred             ccccccc
Q 021397          177 APLRLLL  183 (313)
Q Consensus       177 v~~D~~l  183 (313)
                      +..+|-|
T Consensus       140 ivsNPPY  146 (250)
T d2h00a1         140 CMCNPPF  146 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            7677443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=8.8e-08  Score=86.10  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=55.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ..+|++|||+|||+|..++.+|+. + ..+|+|+|.|+. ...+++++++.++.++|.++++|+..++.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc
Confidence            457999999999999999988874 3 258999999975 57788888999998889999999987653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=88.41  Aligned_cols=51  Identities=16%  Similarity=0.088  Sum_probs=42.3

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ..+|.+|||+|||+|..+..++..  ....|+|+|+|+.+++.++++++..+.
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            457889999999999998877654  223799999999999999999876653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.46  E-value=1.4e-07  Score=78.13  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecCC----------CCCCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRLFVADG----------TTFSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-~v~~~~~D~----------~~~d~v~  178 (313)
                      .|.+|||++||+|..++.++.+  +...|+.||.+...++.+++|++++++.+ ...+...|.          ..||.++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence            6789999999999999999876  34689999999999999999999998753 456666654          2367777


Q ss_pred             cccc
Q 021397          179 LRLL  182 (313)
Q Consensus       179 ~D~~  182 (313)
                      +||-
T Consensus       121 lDPP  124 (183)
T d2ifta1         121 LDPP  124 (183)
T ss_dssp             ECCC
T ss_pred             echh
Confidence            7755

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.46  E-value=2e-07  Score=80.31  Aligned_cols=73  Identities=11%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ....++..++++++++||++|||+|..|..|++..   .+|+|+|+++.+++.++++....   ++++++++|+..++.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~   81 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccc
Confidence            34557788899999999999999999999999862   58999999999999998765332   479999999987764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=5.5e-07  Score=79.10  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCcccccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLRL  181 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~  181 (313)
                      +..+|+|+|||+|..++.+++. + ..+|+|+|+|+..++.+++|++++++.+++.+..+|..        .||++..+|
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP  187 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred             cccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence            3468999999999999998864 4 47999999999999999999999999878888888863        467787884


Q ss_pred             cc
Q 021397          182 LL  183 (313)
Q Consensus       182 ~l  183 (313)
                      -+
T Consensus       188 PY  189 (271)
T d1nv8a_         188 PY  189 (271)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.37  E-value=1.4e-07  Score=79.47  Aligned_cols=64  Identities=22%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      +.+.+.++.+++|++|||.|||+|++...+.+.+.....++|+|+++..+..+          .+..++++|..
T Consensus         8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~   71 (223)
T d2ih2a1           8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL   71 (223)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred             HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehh
Confidence            56778889999999999999999999999988888778899999998764322          24567777764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=7.5e-07  Score=80.02  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGD----SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-----  172 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~----~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----  172 (313)
                      +..++.++++.+|||.|||+|++...+.+.+..    ...++|+|+++.+++.++.++...+.  +..+..+|..     
T Consensus       109 ~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~  186 (328)
T d2f8la1         109 LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLV  186 (328)
T ss_dssp             HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCC
T ss_pred             HHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccccc
Confidence            344567888999999999999999998876632    23799999999999999999988887  4567777753     


Q ss_pred             -CCCcccccccc
Q 021397          173 -TFSLAPLRLLL  183 (313)
Q Consensus       173 -~~d~v~~D~~l  183 (313)
                       .||.+..+|-|
T Consensus       187 ~~fD~vi~NPPy  198 (328)
T d2f8la1         187 DPVDVVISDLPV  198 (328)
T ss_dssp             CCEEEEEEECCC
T ss_pred             ccccccccCCCC
Confidence             36667677543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=1.1e-06  Score=72.60  Aligned_cols=65  Identities=18%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      +...|.+++|+.++|+++|.||.|..+.+.   .++|+|+|.++.+++.+++.   .  ..++.+++++...+
T Consensus        10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~---~--~~~~~~~~~~f~~~   74 (182)
T d1wg8a2          10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL---H--LPGLTVVQGNFRHL   74 (182)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT---C--CTTEEEEESCGGGH
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc---c--ccceeEeehHHHHH
Confidence            456788999999999999999999999874   58999999999999887753   2  24789998887543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.4e-07  Score=79.96  Aligned_cols=50  Identities=14%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      +...|.+|||+|||||..++..+...  ...|+|+|+|+.+++.+++.+++.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcC
Confidence            45578999999999998876555432  247999999999999999877543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=5.6e-07  Score=82.62  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=68.5

Q ss_pred             cCCeEE--EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC---
Q 021397           88 KQGKIY--GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD---  162 (313)
Q Consensus        88 ~~G~~~--~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~---  162 (313)
                      +.+.||  .|.....+.+.++....+.+|||+.||+|..++..|...+ ...|+++|+|+..++.+++|++.++..+   
T Consensus        21 ~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~   99 (375)
T d2dula1          21 DSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRE   99 (375)
T ss_dssp             --CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEE
T ss_pred             CCCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccc
Confidence            445666  5666665544443334678999999999999998887665 3589999999999999999999998642   


Q ss_pred             -----------cEEEEecCC--------CCCCcccccc
Q 021397          163 -----------RCRLFVADG--------TTFSLAPLRL  181 (313)
Q Consensus       163 -----------~v~~~~~D~--------~~~d~v~~D~  181 (313)
                                 ++.+.+.|+        ..||+|.+||
T Consensus       100 ~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP  137 (375)
T d2dula1         100 SKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP  137 (375)
T ss_dssp             CSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC
T ss_pred             ccccccccccceeEeehhhhhhhhHhhcCcCCcccCCC
Confidence                       356667775        2477777776

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.9e-06  Score=75.76  Aligned_cols=75  Identities=15%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397           99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus        99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ...++..+++.+++.||++|+|+|..|..|++..   .+|+|+|+++..++.+++.+......++++++.+|+..++.
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            3456778899999999999999999999999872   58999999999999999988776655689999999987663

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.4e-06  Score=74.15  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ..++..+++.+++.||++|+|+|..|..|++.   ..+|+|+|+++.+++.+++...   ..++++++.+|+..+|.
T Consensus        11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCH
T ss_pred             HHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcc
Confidence            44677888999999999999999999999975   3579999999999999886432   22479999999987764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.01  E-value=2.4e-07  Score=80.30  Aligned_cols=71  Identities=23%  Similarity=0.341  Sum_probs=60.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ..++..+++++++.|||+|||+|..|..|++.   ..+|+|+|+++.+++.+++++.   ...+++++++|+..++.
T Consensus        19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTC
T ss_pred             HHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcccc
Confidence            45778889999999999999999999999987   2589999999999988875543   23489999999988764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.96  E-value=4.7e-06  Score=71.96  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             HHHHHHhcCCCCCC--EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--------CcEEEEe
Q 021397           99 SGAAVSALNISAGD--HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG--------DRCRLFV  168 (313)
Q Consensus        99 s~~~~~~l~~~~g~--~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--------~~v~~~~  168 (313)
                      .+.++.+++.+++.  +|||+.||.|.-++.+|.. +  ++|+++|.++.....++++++++...        .++++++
T Consensus        75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~  151 (250)
T d2oyra1          75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-C--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence            35677788877664  8999999999999999986 3  68999999999999999888876421        3789999


Q ss_pred             cCCC--------CCCccccccccC
Q 021397          169 ADGT--------TFSLAPLRLLLD  184 (313)
Q Consensus       169 ~D~~--------~~d~v~~D~~l~  184 (313)
                      +|+.        .||.|.+||-|.
T Consensus       152 ~Ds~~~L~~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         152 ASSLTALTDITPRPQVVYLDPMFP  175 (250)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCCC
T ss_pred             CcHHHHHhccCCCCCEEEECCCCc
Confidence            9972        477888888753

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.84  E-value=3.7e-05  Score=71.26  Aligned_cols=95  Identities=19%  Similarity=0.230  Sum_probs=73.3

Q ss_pred             CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC------------cEEEEEcCCHHHHHHHHHHHH
Q 021397           89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS------------GSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~------------~~V~avD~s~~~l~~~~~~~~  156 (313)
                      .|.|+--..-+.+++.+++++++.+|+|-|||+|++...+.+.+...            ..+.|+|+++.....++-|+-
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            36555555566788889999999999999999999999988876421            249999999999999999988


Q ss_pred             HcCCC-CcEEEEecCCC------CCCcccccccc
Q 021397          157 KYALG-DRCRLFVADGT------TFSLAPLRLLL  183 (313)
Q Consensus       157 ~~g~~-~~v~~~~~D~~------~~d~v~~D~~l  183 (313)
                      -+|.. .+..+..+|..      .||+++.+|-|
T Consensus       221 l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         221 LHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPF  254 (425)
T ss_dssp             HTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCS
T ss_pred             hcCCccccceeecCchhhhhcccccceEEecCCC
Confidence            88764 23456777763      46677777654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.73  E-value=1.6e-06  Score=74.51  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcC
Q 021397          107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV  143 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~  143 (313)
                      -++++.+|+|+||||||+|..++++.+ ...|.|.|+
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~i   98 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTK   98 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEe
Confidence            467888999999999999999987643 246777776

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.43  E-value=0.00016  Score=61.75  Aligned_cols=69  Identities=19%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      ..++...+.+|+|+|+|.|-=++.+|-.+++ .+|+-+|.+.+++.-+++..+++|+. ++.+++..++.+
T Consensus        64 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~  132 (239)
T d1xdza_          64 FYVDFNQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETF  132 (239)
T ss_dssp             GTSCGGGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHH
T ss_pred             hhhcccCCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhc
Confidence            3444345779999999999999999987764 79999999999999999999999996 799998877654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00035  Score=58.28  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      ++.+|+|+|+|.|-=++.+|-..+ ..+++.+|.+.+++.-+++..+++|+. |+++++..+..+.
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC
T ss_pred             cCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc
Confidence            467999999999999999997655 489999999999999999999999996 7999999988764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00023  Score=67.56  Aligned_cols=96  Identities=7%  Similarity=0.017  Sum_probs=69.5

Q ss_pred             cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC-----------------cEEEEEcCCHHHHHH
Q 021397           88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-----------------GSVTGVDVARHRLAA  150 (313)
Q Consensus        88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~-----------------~~V~avD~s~~~l~~  150 (313)
                      ..|.||--..-+.+++.++.++++.+|+|-|||+|++...+.+.+...                 ..++|+|+++.....
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            347666666677888899999999999999999999998887765321                 258999999999999


Q ss_pred             HHHHHHHcCCCCcE----EEEecCC--------CCCCcccccccc
Q 021397          151 CRTLLQKYALGDRC----RLFVADG--------TTFSLAPLRLLL  183 (313)
Q Consensus       151 ~~~~~~~~g~~~~v----~~~~~D~--------~~~d~v~~D~~l  183 (313)
                      ++-|+--+|...++    .+...|.        ..||+|+.+|-|
T Consensus       222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPf  266 (524)
T d2ar0a1         222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF  266 (524)
T ss_dssp             HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCC
T ss_pred             HHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCc
Confidence            99888777653211    2333332        247777777665

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.39  E-value=0.00091  Score=57.00  Aligned_cols=63  Identities=10%  Similarity=0.022  Sum_probs=47.3

Q ss_pred             HHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          101 AAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       101 ~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      .++...+ .....+|||+|||+|..+..+++..++ .+++..|+ +..+       +..+..++++++.+|..
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~  134 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVI-------ENAPPLSGIEHVGGDMF  134 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHH-------TTCCCCTTEEEEECCTT
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecc-hhhh-------hccCCCCCeEEecCCcc
Confidence            3444555 345689999999999999999999864 78999997 3332       34444568999999974

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00042  Score=61.62  Aligned_cols=82  Identities=11%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             ccCCeEEEecHHHHHHHHhcCCC------CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397           87 YKQGKIYGIDAASGAAVSALNIS------AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus        87 ~~~G~~~~Qd~ss~~~~~~l~~~------~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      |-+.++..++. ...++..+++.      .++.|||+|.|+|..|..+.+..+. .+|+++|+++...+.+++.+.    
T Consensus        15 ~GQnfL~d~~i-~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~----   88 (322)
T d1i4wa_          15 YGFKYLWNPTV-YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE----   88 (322)
T ss_dssp             GGCCCBCCHHH-HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT----
T ss_pred             ccccccCCHHH-HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc----
Confidence            33444433333 34455665543      4678999999999999999987532 489999999999999887643    


Q ss_pred             CCcEEEEecCCCCC
Q 021397          161 GDRCRLFVADGTTF  174 (313)
Q Consensus       161 ~~~v~~~~~D~~~~  174 (313)
                      .++++++.+|+..+
T Consensus        89 ~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          89 GSPLQILKRDPYDW  102 (322)
T ss_dssp             TSSCEEECSCTTCH
T ss_pred             CCCcEEEeCchhhc
Confidence            24789999998654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.91  E-value=0.0012  Score=54.19  Aligned_cols=51  Identities=20%  Similarity=0.247  Sum_probs=41.7

Q ss_pred             HHHhcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          102 AVSALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      .+...++++|++||-+||||.| .+.++++.++ ...|+++|.++.|++.+++
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhh
Confidence            4566789999999999999955 5677777765 4699999999999987763

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.0008  Score=59.51  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCcEEEEecCCC--------
Q 021397          105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA----LGDRCRLFVADGT--------  172 (313)
Q Consensus       105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~~v~~~~~D~~--------  172 (313)
                      ++.+ ...+||.+|.|.|+.+..+++.- +..+|+++|+++..++.+++.+....    -..+++++.+|+.        
T Consensus        73 ~~~~-~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  150 (312)
T d1uira_          73 LTHP-EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEE  150 (312)
T ss_dssp             HHSS-CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCC
T ss_pred             hhCC-CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCC
Confidence            3444 34799999999999998887653 34689999999999999998875431    1347999999984        


Q ss_pred             CCCccccc
Q 021397          173 TFSLAPLR  180 (313)
Q Consensus       173 ~~d~v~~D  180 (313)
                      .||.+.+|
T Consensus       151 ~yDvIi~D  158 (312)
T d1uira_         151 RYDVVIID  158 (312)
T ss_dssp             CEEEEEEE
T ss_pred             cccEEEEe
Confidence            46666655

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.76  E-value=0.0058  Score=51.57  Aligned_cols=54  Identities=11%  Similarity=0.020  Sum_probs=42.4

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT  172 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~  172 (313)
                      ...+|+|+|||+|..+..+++..++ .+++..|+..- +       +.....++++++.+|..
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~  134 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHV-I-------EDAPSYPGVEHVGGDMF  134 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTT-T-------TTCCCCTTEEEEECCTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHh-h-------hhcccCCceEEeccccc
Confidence            3578999999999999999999864 79999998542 2       22333458999999974

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.76  E-value=0.0039  Score=50.82  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CCEEEEECCCcChHH----HHHHHHhCC---CcEEEEEcCCHHHHHHHHH
Q 021397          111 GDHVLDLCAAPGAKL----CMILDIIGD---SGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       111 g~~VLDlcagpG~kt----~~la~~~~~---~~~V~avD~s~~~l~~~~~  153 (313)
                      .-+||++|||+|-=.    ..+.+....   ..+|+|.|+|+..++.+++
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            358999999999844    334443322   2479999999999998874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.63  E-value=0.0061  Score=51.61  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=43.3

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      ..+|+|+|+|+|..+..+++..++ .+++..|.. ..       ++..+..++|+++.+|...
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v-------i~~~~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPK-LKCIVFDRP-QV-------VENLSGSNNLTYVGGDMFT  134 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH-HH-------HTTCCCBTTEEEEECCTTT
T ss_pred             ceEEEEecCCccHHHHHHHHhCCC-CeEEEecCH-HH-------HHhCcccCceEEEecCccc
Confidence            468999999999999999999865 799999973 33       3345556799999999743

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0029  Score=55.28  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCC-------
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGT-------  172 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~-------  172 (313)
                      +..+.+.| .+||=+|.|.|+.+..+++..+ ..+|+++|+++..++.+++.+....  + +.+++++.+|+.       
T Consensus        83 pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~  160 (295)
T d1inla_          83 PMFLHPNP-KKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK  160 (295)
T ss_dssp             HHHHSSSC-CEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred             hHhhCCCC-ceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC
Confidence            34455544 7999999999999888887543 3689999999999999998765432  1 358999999984       


Q ss_pred             -CCCccccc
Q 021397          173 -TFSLAPLR  180 (313)
Q Consensus       173 -~~d~v~~D  180 (313)
                       .||.+.+|
T Consensus       161 ~~yDvIi~D  169 (295)
T d1inla_         161 NEFDVIIID  169 (295)
T ss_dssp             SCEEEEEEE
T ss_pred             CCCCEEEEc
Confidence             35666666

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.09  E-value=0.0021  Score=54.29  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             CCeEEEecHHHHHHHH-hcCCCCCCEEEEECCCcChHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397           89 QGKIYGIDAASGAAVS-ALNISAGDHVLDLCAAPGAKLCMILDII---GDSGSVTGVDVARHRLAACRTLLQKYALGDRC  164 (313)
Q Consensus        89 ~G~~~~Qd~ss~~~~~-~l~~~~g~~VLDlcagpG~kt~~la~~~---~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v  164 (313)
                      .|.-.+|.+.-+.+-. ++.-.+..+||++|++.|+-+..+++.+   +..++|+++|+++.+.....     ... .++
T Consensus        58 ~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~-~~I  131 (232)
T d2bm8a1          58 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDM-ENI  131 (232)
T ss_dssp             TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGC-TTE
T ss_pred             cceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccc-cce
Confidence            4666666665444332 2221234589999999999998888665   45689999999876543222     112 479


Q ss_pred             EEEecCCCCCC
Q 021397          165 RLFVADGTTFS  175 (313)
Q Consensus       165 ~~~~~D~~~~d  175 (313)
                      +++.+|.....
T Consensus       132 ~~i~gDs~~~~  142 (232)
T d2bm8a1         132 TLHQGDCSDLT  142 (232)
T ss_dssp             EEEECCSSCSG
T ss_pred             eeeecccccHH
Confidence            99999986543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.77  E-value=0.0047  Score=53.37  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc---------CCCCcEEEEecCCC-------
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY---------ALGDRCRLFVADGT-------  172 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---------g~~~~v~~~~~D~~-------  172 (313)
                      .+..+||-+|.|.|+.+..+.+. + ..+|+++|+++..++.+++.+...         ....+++++.+|+.       
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            34579999999999999888763 3 358999999999999998755211         12358999999984       


Q ss_pred             CCCccccc
Q 021397          173 TFSLAPLR  180 (313)
Q Consensus       173 ~~d~v~~D  180 (313)
                      .||.|..|
T Consensus       149 ~yDvIi~D  156 (276)
T d1mjfa_         149 GFDVIIAD  156 (276)
T ss_dssp             CEEEEEEE
T ss_pred             CCCEEEEe
Confidence            56777666

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.009  Score=47.74  Aligned_cols=52  Identities=21%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ....+++|++||=+|||+ |..+.++|+.++. ..|+++|.++.+++.++    ++|.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~----~lGa   74 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAE----EIGA   74 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHH----HTTC
T ss_pred             HHhCCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccc----cccc
Confidence            345688999999999886 6667788887753 48999999999998775    4565

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.64  E-value=0.011  Score=47.24  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             HHHhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          102 AVSALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .+...++++|++||=+|||+ |..+.++++.++. .+|+++|.+++|++.++    ++|.
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~----~lGa   73 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAK----FYGA   73 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHH----HHTC
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHH----hhCc
Confidence            45667899999999999988 6677788887653 47999999999998876    4665

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.39  E-value=0.0097  Score=49.60  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=37.8

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ  156 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~  156 (313)
                      .+|+.|||.+||+|..+. +|..++  -.-+|+|++++-++.++++++
T Consensus       211 ~~gd~VlDpF~GSGTT~~-aa~~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAI-VAKKLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHH-HHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHH-HHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            689999999999987765 444554  479999999999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.015  Score=45.74  Aligned_cols=53  Identities=11%  Similarity=0.081  Sum_probs=41.0

Q ss_pred             HHhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          103 VSALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++||++||-+|+|+ |..+.++++.++  .+|+++|.++.+++.++    ++|.+
T Consensus        20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~----~lGa~   73 (168)
T d1piwa2          20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGAD   73 (168)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCS
T ss_pred             HHHhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhh----ccCCc
Confidence            3456899999999999984 445667777765  68999999999998765    46753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.22  E-value=0.014  Score=46.48  Aligned_cols=54  Identities=9%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             HHhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          103 VSALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....++++|++||=+|||+ |..+.++++.++ ...|++.|.++.|++.++    ++|..
T Consensus        21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~----~~Ga~   75 (174)
T d1e3ia2          21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGAT   75 (174)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCS
T ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHH----HhCCC
Confidence            3457799999999999999 666778888776 368999999999987665    46763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.21  E-value=0.035  Score=47.94  Aligned_cols=69  Identities=13%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCcEEEEecCCC---------CCCccc
Q 021397          111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---LGDRCRLFVADGT---------TFSLAP  178 (313)
Q Consensus       111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~~v~~~~~D~~---------~~d~v~  178 (313)
                      ..+||=+|-|.|+....+.+.-+ ..+|+++|+++..++.+++.+....   -+.+++++.+|+.         .||.+.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            46999999999999998877533 3589999999999999998664321   1358999999973         356665


Q ss_pred             cc
Q 021397          179 LR  180 (313)
Q Consensus       179 ~D  180 (313)
                      .|
T Consensus       160 ~D  161 (290)
T d1xj5a_         160 VD  161 (290)
T ss_dssp             EC
T ss_pred             Ec
Confidence            55

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.21  E-value=0.014  Score=50.26  Aligned_cols=70  Identities=20%  Similarity=0.241  Sum_probs=55.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-C--CCCcEEEEecCCC--------CCCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-A--LGDRCRLFVADGT--------TFSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g--~~~~v~~~~~D~~--------~~d~v~  178 (313)
                      ...+||-+|.|.|+.+..+.+.-+ ..+|+.+|+++..++.+++.+... +  -+.+++++.+|+.        .||.+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            457999999999999998887533 469999999999999999876432 2  1358999999984        467777


Q ss_pred             cc
Q 021397          179 LR  180 (313)
Q Consensus       179 ~D  180 (313)
                      +|
T Consensus       154 ~D  155 (274)
T d1iy9a_         154 VD  155 (274)
T ss_dssp             ES
T ss_pred             Ec
Confidence            77

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.19  E-value=0.015  Score=48.96  Aligned_cols=48  Identities=21%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA  159 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g  159 (313)
                      .+|+.|||.+||+|..+.+. ..++  -+.+++|+++.-.+.++++++...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa-~~lg--R~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVA-IQEG--RNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHH-HHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCEEEecCCCCcHHHHHH-HHhC--CeEEEEeCCHHHHHHHHHHHHHhh
Confidence            58999999999999876544 4454  489999999999999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.99  E-value=0.033  Score=43.54  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             HHHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          102 AVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      .....++++|++||=+|||+-|. +.++++.++  .+|+++|.++.+++.+++
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH
Confidence            34556899999999999986444 566776654  589999999999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.91  E-value=0.025  Score=44.97  Aligned_cols=50  Identities=12%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             HHhcCCCCCCEEEEECCCcChHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          103 VSALNISAGDHVLDLCAAPGAKL-CMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ....++++|+.|+=.|||+.|.. .++++.++ ..+|+++|.++++++.+++
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHh
Confidence            34567999999999999987764 45566554 3689999999999997764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.83  E-value=0.06  Score=48.50  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             CCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          108 ISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       108 ~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      +.+++.++|+||--|..+..++...++ ..+|+|+|.++...+.+++|++.+...
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            567889999999999999988877654 358999999999999999999987653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.74  E-value=0.025  Score=44.53  Aligned_cols=53  Identities=9%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             HhcCCCCCCEEEEECCCcChHHH-HHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAPGAKLC-MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~-~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...++++|++|+=.|+|+++.+. .++...+ ...|+++|.++++++.++    ++|.+
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~----~~GAd   75 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAK----VFGAT   75 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCC
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHH----HcCCc
Confidence            45679999999999999966654 4455444 468999999999997765    56763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.048  Score=42.73  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=42.2

Q ss_pred             HHHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .+...++++|++||=+|||+.|. +.++++.++ ...|+++|.++++++.++    ++|..
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~----~~Ga~   73 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAK----EIGAD   73 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHH----HhCCc
Confidence            44556899999999999998776 445666654 358999999999998765    45763

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.50  E-value=0.012  Score=50.61  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397          109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY  158 (313)
Q Consensus       109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  158 (313)
                      .+|+.|||.+||+|..+.+ |..++  -.-+|+|++++.++.+++++...
T Consensus       249 ~~gdiVlDpF~GSGTT~~A-A~~lg--R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLV-AERES--RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHH-HHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCCEEEecCCCCcHHHHH-HHHcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence            5899999999999877654 44454  47999999999999998776543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.31  E-value=0.027  Score=44.63  Aligned_cols=54  Identities=9%  Similarity=0.122  Sum_probs=42.9

Q ss_pred             HHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....++++|++||=+|||+.|. +.++++.++. ..|+++|.++++++.++    ++|..
T Consensus        20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~----~lGa~   74 (174)
T d1p0fa2          20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAI----ELGAT   74 (174)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH----HTTCS
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHH----HcCCc
Confidence            3456799999999999998776 4566777763 68999999999998876    46763

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.27  E-value=0.015  Score=50.49  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=36.6

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL  155 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~  155 (313)
                      .+.+|||++||.||.+..+-+ .+ --.|.|+|+++.+++..+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~-aG-~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALES-CG-AECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHH-TT-CEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHHHHHHHH-CC-CeEEEEEeCCHHHHHHHHHHC
Confidence            478999999999999988754 33 235788999999999999885

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.03  Score=48.27  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCcEEEEecCCC--------CCCccc
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---LGDRCRLFVADGT--------TFSLAP  178 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~~v~~~~~D~~--------~~d~v~  178 (313)
                      ...+||=+|.|.|+.+..+.+.-+ ..+|+.+|+++..++.+++-+....   -+.+++++.+|+.        .||.+.
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            347999999999999998886533 4699999999999999998764321   1358999999984        466666


Q ss_pred             cc
Q 021397          179 LR  180 (313)
Q Consensus       179 ~D  180 (313)
                      .|
T Consensus       157 ~D  158 (285)
T d2o07a1         157 TD  158 (285)
T ss_dssp             EE
T ss_pred             Ec
Confidence            66

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.85  E-value=0.07  Score=45.55  Aligned_cols=56  Identities=11%  Similarity=0.084  Sum_probs=42.7

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL  176 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~  176 (313)
                      ++|||++||.||.+.-+-+. + --.+.|+|+++...+..+.|.   +    -.++.+|.+.++.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~---~----~~~~~~Di~~~~~   56 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---S----AKLIKGDISKISS   56 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC---C----SEEEESCTTTSCG
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---C----CCCccCChhhCCH
Confidence            47999999999999877654 3 235779999999998888773   2    2467888877653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.85  E-value=0.025  Score=49.42  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCcEEEEecCCC--------
Q 021397          104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL---GDRCRLFVADGT--------  172 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~~v~~~~~D~~--------  172 (313)
                      .++.+. ..+||-+|.|.|+.+..+.+.- +..+|+.+|+++..++.+++.+....-   ..+++++.+|+.        
T Consensus       101 l~~~~~-pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~  178 (312)
T d2b2ca1         101 MFAHPD-PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKN  178 (312)
T ss_dssp             HHHSSS-CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTT
T ss_pred             HhcCCC-CCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCC
Confidence            344444 4689999999999998888753 336899999999999999987643211   257999999984        


Q ss_pred             CCCccccc
Q 021397          173 TFSLAPLR  180 (313)
Q Consensus       173 ~~d~v~~D  180 (313)
                      .||.|.+|
T Consensus       179 ~yDvII~D  186 (312)
T d2b2ca1         179 EFDVIITD  186 (312)
T ss_dssp             CEEEEEEC
T ss_pred             CCCEEEEc
Confidence            46777766

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.63  E-value=0.017  Score=48.96  Aligned_cols=64  Identities=17%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CCCEEEEECCCcChHHHHHHHHhC---------------------------------------CCcEEEEEcCCHHHHHH
Q 021397          110 AGDHVLDLCAAPGAKLCMILDIIG---------------------------------------DSGSVTGVDVARHRLAA  150 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~~---------------------------------------~~~~V~avD~s~~~l~~  150 (313)
                      .+..++|-|||+|...+..|-...                                       ....+++.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            345799999999999887765421                                       01357899999999988


Q ss_pred             H---HHHHHHcCCCCcEEEEecCCCC
Q 021397          151 C---RTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       151 ~---~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +   ++|+++.|+.+.|.+...|+..
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~  155 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFD  155 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhc
Confidence            8   5699999998889999999754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.51  E-value=0.07  Score=41.87  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=38.6

Q ss_pred             HHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          103 VSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      ....+++||++||=.|||+++. +.+++..++ ...|+++|.++++++.+++
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHH
Confidence            3456799999999999987765 445555554 4699999999999987753

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.063  Score=46.34  Aligned_cols=56  Identities=14%  Similarity=0.117  Sum_probs=41.2

Q ss_pred             CEEEEECCCcChHHHHHHHHhCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397          112 DHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF  174 (313)
Q Consensus       112 ~~VLDlcagpG~kt~~la~~~~~~~-~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~  174 (313)
                      .+|+|++||.||.+..+... +-.. .|.|+|+++.+++..+.|.   +   ...++.+|...+
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~---~---~~~~~~~di~~~   59 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF---P---HTQLLAKTIEGI   59 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC---T---TSCEECSCGGGC
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC---C---CCCcccCchhhC
Confidence            57999999999998877543 3222 3789999999999888763   2   345677787644

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.58  E-value=0.13  Score=39.93  Aligned_cols=54  Identities=15%  Similarity=0.293  Sum_probs=41.1

Q ss_pred             HHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++||++||=.|||+.+. +.++++.++. ..|+++|.++++++.++    ++|..
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak----~lGa~   75 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAK----EFGAT   75 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH----HHTCS
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHH----HhCCc
Confidence            3456899999999888876544 5667777764 68999999999987665    56763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.21  Score=38.69  Aligned_cols=54  Identities=11%  Similarity=0.129  Sum_probs=39.8

Q ss_pred             HHHhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          102 AVSALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      .....+++||++||=.|||+ |..+.++++.++  ..++++|.++++++.++    ++|..
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~----~lGad   76 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAK----ALGAD   76 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHH----HHTCS
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHh----ccCCc
Confidence            33567899999999999876 445667777664  57889999999887654    56753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.18  Score=39.24  Aligned_cols=52  Identities=19%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             HhcCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...++++|++||=.|+  +-|..+.++|+.++  .+|++++.++++++.++    ++|.+
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~   75 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVL----QNGAH   75 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCS
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccc----ccCcc
Confidence            4557899999999996  34555677888775  58999998988877665    56764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.53  E-value=0.17  Score=39.55  Aligned_cols=53  Identities=15%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             HHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ...++++||++||=+|||+-|. +.++++.++. ..|++.|.++.+++.+++    +|.
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~----~Ga   74 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ----LGA   74 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH----HTC
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHH----cCC
Confidence            4456899999999999987664 5566777664 578999999999888764    565

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.45  E-value=0.27  Score=37.79  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             HHHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          102 AVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .....++++|++||=+|||+=|. +.++++.++  .+|+++|.++.+++.++    ++|.
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~----~~Ga   72 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELAR----KLGA   72 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTC
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhh----ccCc
Confidence            33456899999999999887555 456666654  68999999999998765    4675

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.34  Score=37.57  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=40.3

Q ss_pred             HhcCCCCCCEEEEECCCc--ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          104 SALNISAGDHVLDLCAAP--GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       104 ~~l~~~~g~~VLDlcagp--G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ...+++||++||=.|+|.  |....++|+..+  .+|++++.|+++++.++    ++|.+
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~----~lGa~   75 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSAL----KAGAW   75 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCS
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHH----hcCCe
Confidence            345789999998886664  556778888875  68999999999988766    45753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.20  E-value=0.6  Score=35.55  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             HHhcCCCCCCEEEEECCCcChHHH-HHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          103 VSALNISAGDHVLDLCAAPGAKLC-MILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlcagpG~kt~-~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      ....+++||++||=.|||+-|... .+++..+  .+|+++|.++++++.++    ++|.
T Consensus        20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k----~~Ga   72 (168)
T d1rjwa2          20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAK----ELGA   72 (168)
T ss_dssp             HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHH----HTTC
T ss_pred             HHHhCCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhh----hcCc
Confidence            345679999999999999877754 4455433  58999999999988765    4675

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.90  E-value=0.53  Score=36.13  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             HHHhcCCCCCCEEEEECC-CcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          102 AVSALNISAGDHVLDLCA-APGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlca-gpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      .....++++|++||=.|+ |+.|. +.++++.++. ..|+++|.++++++.+++    +|.
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~----~Ga   74 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR----AGA   74 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH----HTC
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHH----cCC
Confidence            445678999999999996 54444 5667776653 589999999999888764    565

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.70  E-value=0.35  Score=37.51  Aligned_cols=46  Identities=15%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEECCCcChHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397          107 NISAGDHVLDLCAAPGAKL-CMILDIIGDSGSVTGVDVARHRLAACRT  153 (313)
Q Consensus       107 ~~~~g~~VLDlcagpG~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~  153 (313)
                      .++||+.||=.|+|+.|.. .++++.++. ..|+++|.++++++.+++
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhh
Confidence            4689999999999887765 567777764 589999999999887763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.40  E-value=0.38  Score=37.34  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=39.4

Q ss_pred             HHhcCCCCCCEEEEECC-Cc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397          103 VSALNISAGDHVLDLCA-AP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG  161 (313)
Q Consensus       103 ~~~l~~~~g~~VLDlca-gp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  161 (313)
                      ....+++||++||=.|+ |+ |..+.++++.++  .+|++++.++++++.++    ++|.+
T Consensus        20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~----~lGa~   74 (171)
T d1iz0a2          20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAE   74 (171)
T ss_dssp             HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCS
T ss_pred             HHHhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccc----ccccc
Confidence            34467899999998875 44 455677788765  58999999998887665    46764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=1.2  Score=36.68  Aligned_cols=63  Identities=10%  Similarity=-0.004  Sum_probs=50.2

Q ss_pred             CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT  173 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~  173 (313)
                      +|..||=.|++ +|.+..+|+.+ ..+..|+.+|.++++++.+.+.++..+...++..+..|...
T Consensus         9 k~Kv~lITGas-~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN   72 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence            46778888866 56777777665 33468999999999999999999988766678889999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.20  E-value=0.38  Score=35.54  Aligned_cols=54  Identities=7%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             EEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          113 HVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       113 ~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      +|+=+  |-|..+..+++.+.. +..|+.+|.++++++.+++.   .+    +.++.+|+...+
T Consensus         2 ~IvI~--G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~   56 (132)
T d1lssa_           2 YIIIA--GIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIK   56 (132)
T ss_dssp             EEEEE--CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHH
T ss_pred             EEEEE--CCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh----hhhccCcccchh
Confidence            44444  457888888877643 34799999999999877643   22    568899987644

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.80  E-value=1.1  Score=34.74  Aligned_cols=53  Identities=21%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             HHHhcCCCCCCEEEEECCCc--ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397          102 AVSALNISAGDHVLDLCAAP--GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL  160 (313)
Q Consensus       102 ~~~~l~~~~g~~VLDlcagp--G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  160 (313)
                      +....++++|++||=.|++.  |..+.++++..+  .+|++++.++++++.++    .+|.
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~----~~Ga   75 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLK----QIGF   75 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTC
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHH----hhhh
Confidence            34567899999999767654  344667777764  68999999998876655    4565

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=2.9  Score=34.07  Aligned_cols=63  Identities=17%  Similarity=0.127  Sum_probs=48.1

Q ss_pred             CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397          110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS  175 (313)
Q Consensus       110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d  175 (313)
                      .|..+|=.|++.| .+..+|..+ ..+..|+.+|.++++++.+.+.++..|-  ++..+..|.++.+
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNRE   69 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHH
Confidence            4777887777765 555555543 3446899999999999999999988774  6889999997653