Citrus Sinensis ID: 037716
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | 2.2.26 [Sep-21-2011] | |||||||
| Q94ID7 | 370 | Geranylgeranyl pyrophosph | N/A | no | 0.867 | 0.829 | 0.639 | 1e-112 | |
| P34802 | 371 | Heterodimeric geranylgera | yes | no | 0.830 | 0.792 | 0.665 | 1e-111 | |
| Q43133 | 366 | Geranylgeranyl pyrophosph | N/A | no | 0.827 | 0.800 | 0.663 | 1e-111 | |
| Q9ZU77 | 347 | Geranylgeranyl pyrophosph | no | no | 0.824 | 0.841 | 0.672 | 1e-110 | |
| P80042 | 369 | Geranylgeranyl pyrophosph | N/A | no | 0.966 | 0.926 | 0.565 | 1e-108 | |
| Q42698 | 357 | Geranylgeranyl pyrophosph | N/A | no | 0.822 | 0.815 | 0.636 | 1e-108 | |
| Q9SLG2 | 372 | Geranylgeranyl pyrophosph | no | no | 0.906 | 0.862 | 0.578 | 1e-102 | |
| O04046 | 376 | Heterodimeric geranylgera | no | no | 0.824 | 0.776 | 0.612 | 1e-100 | |
| Q9LJY2 | 344 | Geranylgeranyl pyrophosph | no | no | 0.906 | 0.933 | 0.555 | 2e-96 | |
| Q9LRR0 | 361 | Putative geranylgeranyl p | no | no | 0.827 | 0.811 | 0.620 | 3e-95 |
| >sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 | Back alignment and function desciption |
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Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 48 QNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVR 107
+ ++ E + P P+F F+ YM++K +N+AL+ A+ LQ P KIH++MRYSLLAGGKRVR
Sbjct: 63 EETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVR 122
Query: 108 PLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGES 167
P LC+A+CELVGG++S AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H VFGE
Sbjct: 123 PALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGED 182
Query: 168 TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-KD 226
A+LAGDALL+ A EH+AV+ VS R+VRA+ E+ A+G EGLVAG+ VDI SEG +
Sbjct: 183 VAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSE 242
Query: 227 VSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVT 286
V L++LE+IH+HKTAKLLE AVV GA++GGG EVE++R YAR IGLLFQVVDDILDVT
Sbjct: 243 VDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVT 302
Query: 287 KSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLA 346
KSS+ELGKTAGKDL + K TYPKL+GIE ++ FA +L +A E+LA F+ KAAPL LA
Sbjct: 303 KSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALA 362
Query: 347 NYIASRQN 354
NYIA RQN
Sbjct: 363 NYIAHRQN 370
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Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. Hevea brasiliensis (taxid: 3981) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0 |
| >sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1 | Back alignment and function description |
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| >sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| 224077270 | 365 | predicted protein [Populus trichocarpa] | 1.0 | 0.969 | 0.671 | 1e-134 | |
| 255580739 | 372 | geranyl geranyl pyrophosphate synthase, | 1.0 | 0.951 | 0.655 | 1e-133 | |
| 325516280 | 365 | geranylgeranyl pyrophosphate synthase 1 | 0.997 | 0.967 | 0.639 | 1e-132 | |
| 350538439 | 365 | geranylgeranyl pyrophosphate synthase 1 | 0.997 | 0.967 | 0.636 | 1e-131 | |
| 290575616 | 365 | geranylgeranyl diphosphate synthase [Nic | 0.991 | 0.961 | 0.652 | 1e-131 | |
| 291170333 | 370 | geranylgeranyl diphosphate synthase [Jat | 0.997 | 0.954 | 0.625 | 1e-128 | |
| 4958920 | 367 | GGPP synthase [Daucus carota] | 1.0 | 0.964 | 0.637 | 1e-125 | |
| 79154639 | 367 | putative geranylgeranyl pyrophosphate sy | 1.0 | 0.964 | 0.634 | 1e-124 | |
| 224069436 | 314 | predicted protein [Populus trichocarpa] | 0.853 | 0.961 | 0.685 | 1e-118 | |
| 56122559 | 359 | geranylgeranyl diphosphate synthase [Ado | 0.892 | 0.880 | 0.670 | 1e-117 |
| >gi|224077270|ref|XP_002305196.1| predicted protein [Populus trichocarpa] gi|222848160|gb|EEE85707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/365 (67%), Positives = 280/365 (76%), Gaps = 11/365 (3%)
Query: 1 MAVSATIPSYGNSTLFRNPINDFKKSPYRAPIFRFKLFSKKIKARHAQNSVFE------- 53
MA S TI Y NS L + PIN + R P+ K KI+A + + F+
Sbjct: 1 MAFSTTISFYDNSLLLKKPINGLINNQPRTPLGHLKFAPLKIQATYVASPSFKQSFQSQE 60
Query: 54 ----STDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPL 109
S + P F F+EYMI KA QVNKALDEAV LQ P KI++AMRYSLLAGGKRVRP+
Sbjct: 61 VGNKSQKVSFPAFEFKEYMINKANQVNKALDEAVPLQHPQKINEAMRYSLLAGGKRVRPI 120
Query: 110 LCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTA 169
LCIASCELVGGDE AMPAACALEMIHTMSLIHDDLP +DND+ RR KP SH++FGE TA
Sbjct: 121 LCIASCELVGGDEGLAMPAACALEMIHTMSLIHDDLPCMDNDDLRRGKPTSHKIFGEDTA 180
Query: 170 ILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSL 229
+LAGDALLSLA EHVA N VS DRVV+AIAE+ S +G +GLVAG+ VDI SEGK+VSL
Sbjct: 181 VLAGDALLSLAFEHVARNTKNVSSDRVVQAIAELGSTVGSKGLVAGQIVDIDSEGKEVSL 240
Query: 230 KELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289
LEYIHVHKTAKLLEAAVVCGA++GG +A VER+R YAR IGLLFQVVDDILDVTKSS
Sbjct: 241 STLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDILDVTKSS 300
Query: 290 EELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYI 349
EELGKTAGKDLAS KATYPKLMGI+ AK FA +L+ +A + LA+F+ KAAPLY ANYI
Sbjct: 301 EELGKTAGKDLASDKATYPKLMGIDEAKKFAAQLVDEANQGLAFFDHVKAAPLYHFANYI 360
Query: 350 ASRQN 354
A+RQN
Sbjct: 361 ATRQN 365
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580739|ref|XP_002531191.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] gi|223529232|gb|EEF31206.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|325516280|gb|ADZ24718.1| geranylgeranyl pyrophosphate synthase 1 [Solanum pennellii] | Back alignment and taxonomy information |
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| >gi|350538439|ref|NP_001234087.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] gi|82547880|gb|ABB82554.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|290575616|gb|ADD49735.1| geranylgeranyl diphosphate synthase [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|291170333|gb|ADD82422.1| geranylgeranyl diphosphate synthase [Jatropha curcas] | Back alignment and taxonomy information |
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| >gi|4958920|dbj|BAA78047.1| GGPP synthase [Daucus carota] | Back alignment and taxonomy information |
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| >gi|79154639|gb|ABB52066.1| putative geranylgeranyl pyrophosphate synthase [Daucus carota subsp. sativus] | Back alignment and taxonomy information |
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| >gi|224069436|ref|XP_002302977.1| predicted protein [Populus trichocarpa] gi|222844703|gb|EEE82250.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|56122559|gb|AAV74397.1| geranylgeranyl diphosphate synthase [Adonis aestivalis var. palaestina] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| TAIR|locus:2115450 | 371 | GGPS1 "geranylgeranyl pyrophos | 0.830 | 0.792 | 0.642 | 9.7e-96 | |
| TAIR|locus:2046283 | 347 | AT2G18620 [Arabidopsis thalian | 0.824 | 0.841 | 0.645 | 1.1e-94 | |
| UNIPROTKB|P80042 | 369 | GGPS1 "Geranylgeranyl pyrophos | 0.966 | 0.926 | 0.545 | 1.5e-92 | |
| TAIR|locus:2089626 | 360 | AT3G14530 "AT3G14530" [Arabido | 0.827 | 0.813 | 0.602 | 7.5e-89 | |
| TAIR|locus:2046258 | 372 | GGPS4 "geranylgeranyl pyrophos | 0.915 | 0.870 | 0.544 | 1.6e-88 | |
| TAIR|locus:2093832 | 357 | AT3G29430 [Arabidopsis thalian | 0.827 | 0.820 | 0.582 | 3.7e-87 | |
| TAIR|locus:2048993 | 376 | GGPS2 "geranylgeranyl pyrophos | 0.819 | 0.771 | 0.589 | 2.6e-86 | |
| TAIR|locus:2079028 | 360 | AT3G32040 [Arabidopsis thalian | 0.827 | 0.813 | 0.569 | 1.4e-85 | |
| TAIR|locus:2087550 | 344 | AT3G20160 [Arabidopsis thalian | 0.822 | 0.845 | 0.571 | 3.1e-83 | |
| TAIR|locus:2010182 | 336 | GGPS6 "geranylgeranyl pyrophos | 0.822 | 0.866 | 0.534 | 3.7e-80 |
| TAIR|locus:2115450 GGPS1 "geranylgeranyl pyrophosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 192/299 (64%), Positives = 231/299 (77%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
+F F Y+I KAE VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG
Sbjct: 73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGG 132
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
+ES AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+VFGE A+LAGDALLS A
Sbjct: 133 EESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFA 192
Query: 181 LEHVAVNIAG--VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYI 235
EH+A + VSP RVVRA+ E+ A+G EGLVAG+ VDI+SEG DV L+ LE+I
Sbjct: 193 FEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFI 252
Query: 236 HVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
H+HKTA LLE E+ER+R +ARCIGLLFQVVDDILDVTKSS+ELGKT
Sbjct: 253 HLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKT 312
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
AGKDL + K TYPK+MG+E ++ FA +L +A ++L F++ K APL LANYIA RQN
Sbjct: 313 AGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
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| TAIR|locus:2046283 AT2G18620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P80042 GGPS1 "Geranylgeranyl pyrophosphate synthase, chloroplastic" [Capsicum annuum (taxid:4072)] | Back alignment and assigned GO terms |
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| TAIR|locus:2089626 AT3G14530 "AT3G14530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046258 GGPS4 "geranylgeranyl pyrophosphate synthase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2093832 AT3G29430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2048993 GGPS2 "geranylgeranyl pyrophosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079028 AT3G32040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2087550 AT3G20160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010182 GGPS6 "geranylgeranyl pyrophosphate synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94ID7 | GGPPS_HEVBR | 2, ., 5, ., 1, ., 1, 0 | 0.6396 | 0.8672 | 0.8297 | N/A | no |
| P34802 | GGPP1_ARATH | 2, ., 5, ., 1, ., 1, 0 | 0.6655 | 0.8305 | 0.7924 | yes | no |
| Q42698 | GGPPS_CATRO | 2, ., 5, ., 1, ., 1, 0 | 0.6369 | 0.8220 | 0.8151 | N/A | no |
| P80042 | GGPPS_CAPAN | 2, ., 5, ., 1, ., 1, 0 | 0.5653 | 0.9661 | 0.9268 | N/A | no |
| Q43133 | GGPPS_SINAL | 2, ., 5, ., 1, ., 1, 0 | 0.6632 | 0.8276 | 0.8005 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1 | 0.963 |
| 4th Layer | 2.5.1.10 | 0.946 |
| 4th Layer | 2.5.1.1 | 0.946 |
| 4th Layer | 2.5.1.29 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.IV.3487.1 | hypothetical protein (293 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | IDI | • | • | • | 0.913 | ||||||
 | fgenesh4_pm.C_LG_IX000553 | • | • | 0.910 | |||||||
 | gw1.I.925.1 | • | • | 0.910 | |||||||
 | eugene3.00012780 | • | • | • | 0.906 | ||||||
 | estExt_fgenesh4_pg.C_280076 | • | • | • | • | 0.905 | |||||
 | eugene3.00101320 | • | • | • | • | 0.905 | |||||
 | grail3.0045022601 | • | • | • | 0.904 | ||||||
 | gw1.XV.832.1 | • | • | • | 0.903 | ||||||
 | grail3.0001025501 | • | • | • | 0.903 | ||||||
 | gw1.VII.3333.1 | • | • | • | • | 0.902 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 354 | |||
| pfam00348 | 260 | pfam00348, polyprenyl_synt, Polyprenyl synthetase | 5e-88 | |
| cd00685 | 259 | cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat | 9e-88 | |
| COG0142 | 322 | COG0142, IspA, Geranylgeranyl pyrophosphate syntha | 6e-87 | |
| PRK10581 | 299 | PRK10581, PRK10581, geranyltranstransferase; Provi | 8e-69 | |
| CHL00151 | 323 | CHL00151, preA, prenyl transferase; Reviewed | 1e-57 | |
| cd00867 | 236 | cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S | 7e-56 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 7e-33 | |
| PLN02857 | 416 | PLN02857, PLN02857, octaprenyl-diphosphate synthas | 5e-31 | |
| PRK10888 | 323 | PRK10888, PRK10888, octaprenyl diphosphate synthas | 3e-29 | |
| TIGR02748 | 319 | TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn | 3e-29 | |
| TIGR02749 | 322 | TIGR02749, prenyl_cyano, solanesyl diphosphate syn | 5e-29 | |
| PLN02890 | 422 | PLN02890, PLN02890, geranyl diphosphate synthase | 6e-19 |
| >gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 5e-88
Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 5/256 (1%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
+ AM Y LLAGGKR+RPLL + + +G + + ACA+EMIHT SL+HDDL +DN
Sbjct: 1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDL--MDN 58
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210
+ RR KP H+ FGE+ AILAGDALLS A + +A + V P+ I+E+ +A+G +
Sbjct: 59 SDLRRGKPTCHKKFGEAGAILAGDALLSRAFQLLA-LLGHVRPEPKYILISELANAVGAQ 117
Query: 211 GLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYAR 270
G V G+ +D+ +EGKD++L+E I +KTA L A+V GA++ G + + + + ++ R
Sbjct: 118 GEV-GQLMDLETEGKDITLEEYLRIVSYKTAALFYASVQLGAIVAGADEEDEKDLYDFGR 176
Query: 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE- 329
+GL FQ+ DDILD+T +EELGK G DL GK+T P L+ +E A+ +LL +A E
Sbjct: 177 DLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRKLLREAYEQ 236
Query: 330 ELAYFEASKAAPLYFL 345
+L+ A A L
Sbjct: 237 KLSEAAAQGVALTKAL 252
|
Length = 260 |
| >gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
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| >gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
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| >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional | Back alignment and domain information |
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| >gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed | Back alignment and domain information |
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| >gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
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| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
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| >gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase | Back alignment and domain information |
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| >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
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| >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II | Back alignment and domain information |
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| >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase | Back alignment and domain information |
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| >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| PRK10581 | 299 | geranyltranstransferase; Provisional | 100.0 | |
| COG0142 | 322 | IspA Geranylgeranyl pyrophosphate synthase [Coenzy | 100.0 | |
| KOG0776 | 384 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 100.0 | |
| TIGR02749 | 322 | prenyl_cyano solanesyl diphosphate synthase. Membe | 100.0 | |
| CHL00151 | 323 | preA prenyl transferase; Reviewed | 100.0 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 100.0 | |
| PLN02890 | 422 | geranyl diphosphate synthase | 100.0 | |
| PLN02857 | 416 | octaprenyl-diphosphate synthase | 100.0 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 100.0 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 100.0 | |
| cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. | 100.0 | |
| KOG0777 | 322 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| KOG0711 | 347 | consensus Polyprenyl synthetase [Coenzyme transpor | 100.0 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.87 | |
| PF07307 | 212 | HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE | 96.84 | |
| cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase | 96.73 | |
| PLN02632 | 334 | phytoene synthase | 96.61 | |
| TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this fam | 96.39 | |
| TIGR01559 | 336 | squal_synth farnesyl-diphosphate farnesyltransfera | 96.33 | |
| TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes | 95.58 | |
| PF00494 | 267 | SQS_PSY: Squalene/phytoene synthase; InterPro: IPR | 94.74 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 91.73 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 84.94 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 83.6 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 83.24 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 82.94 | |
| COG1562 | 288 | ERG9 Phytoene/squalene synthetase [Lipid metabolis | 81.27 |
| >PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=502.90 Aligned_cols=293 Identities=41% Similarity=0.609 Sum_probs=266.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 139 (354)
++|..+++.....|++.|++.+... .+..+.++++|++..||||+||.|++++++++|++.+...++|++|||||+||
T Consensus 1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aS 80 (299)
T PRK10581 1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4678889899999999999998652 25569999999999999999999999999999998888999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
|||||||+||+|++|||+||+|.+||++.|||+||||++.|++.+++... ...+....+++.+++++.|..+++.||.+
T Consensus 81 LiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l 160 (299)
T PRK10581 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_pred HHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence 99999999999999999999999999999999999999999999987532 22334566788888887666889999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGN-AIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~-~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
|+.+.....+.++|.+|+.+|||+||++||.+|++++|.+ ++.++.+++||.++|+||||+||++|++++++.+||+.|
T Consensus 161 d~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g 240 (299)
T PRK10581 161 DLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_pred HHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcc
Confidence 9998776689999999999999999999999999999976 457899999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCC-CC-HHHHHHHHHHHHhccC
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEA-SK-AAPLYFLANYIASRQN 354 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~-~~-~~~L~~l~~~~~~R~~ 354 (354)
+|+++||+|||+++++++|++.++++.++|++.|+.++. +. ++.|..|++|+++|++
T Consensus 241 ~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999954 33 5789999999999975
|
|
| >COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >TIGR02749 prenyl_cyano solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >CHL00151 preA prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02890 geranyl diphosphate synthase | Back alignment and domain information |
|---|
| >PLN02857 octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 | Back alignment and domain information |
|---|
| >cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
|---|
| >PLN02632 phytoene synthase | Back alignment and domain information |
|---|
| >TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
|---|
| >TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase | Back alignment and domain information |
|---|
| >TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
|---|
| >PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 354 | ||||
| 3kra_A | 295 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 1e-102 | ||
| 2j1p_A | 293 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 4e-92 | ||
| 2j1o_A | 268 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 2e-81 | ||
| 4f62_A | 317 | Crystal Structure Of A Putative Farnesyl-Diphosphat | 6e-62 | ||
| 3ts7_A | 324 | Crystal Structure Of Farnesyl Diphosphate Synthase | 1e-46 | ||
| 3uca_A | 324 | Crystal Structure Of Isoprenoid Synthase (Target Ef | 3e-45 | ||
| 3p41_A | 303 | Crystal Structure Of Polyprenyl Synthetase From Pse | 7e-44 | ||
| 3lji_A | 304 | Crystal Structure Of Putative Geranyltranstransfera | 1e-43 | ||
| 1rtr_A | 301 | Crystal Structure Of S. Aureus Farnesyl Pyrophospha | 8e-43 | ||
| 3p8r_A | 302 | Crystal Structure Of Polyprenyl Synthase From Vibri | 1e-41 | ||
| 2for_A | 323 | Crystal Structure Of The Shigella Flexneri Farnesyl | 3e-39 | ||
| 3lom_A | 313 | Crystal Structure Of Geranyltransferase From Legion | 4e-39 | ||
| 3m9u_A | 309 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-38 | ||
| 1rqi_A | 300 | Active Conformation Of Farnesyl Pyrophosphate Synth | 3e-38 | ||
| 1rqj_A | 299 | Active Conformation Of Farnesyl Pyrophosphate Synth | 3e-38 | ||
| 3p8l_A | 302 | Crystal Structure Of Polyprenyl Synthase From Enter | 4e-35 | ||
| 3lvs_A | 298 | Crystal Structure Of Farnesyl Diphosphate Synthase | 5e-35 | ||
| 3q1o_A | 310 | Crystal Structure Of Geranyltransferase From Helico | 5e-33 | ||
| 3llw_A | 311 | Crystal Structure Of Geranyltransferase From Helico | 5e-33 | ||
| 1wy0_A | 342 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 3e-32 | ||
| 2h8o_A | 335 | The 1.6a Crystal Structure Of The Geranyltransferas | 7e-32 | ||
| 3npk_A | 291 | The Crystal Structure Of Geranyltranstransferase Fr | 1e-31 | ||
| 3oyr_A | 345 | Crystal Structure Of Polyprenyl Synthase From Caulo | 7e-26 | ||
| 3aqb_B | 325 | M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha | 1e-24 | ||
| 2ftz_A | 284 | Crystal Structure Of Geranyltranstransferase (Ec 2. | 3e-23 | ||
| 3nf2_A | 352 | Crystal Structure Of Polyprenyl Synthetase From Str | 1e-22 | ||
| 3m0g_A | 297 | Crystal Structure Of Putative Farnesyl Diphosphate | 4e-22 | ||
| 4dhd_A | 358 | Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta | 1e-19 | ||
| 3kra_B | 274 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 9e-19 | ||
| 3mzv_A | 341 | Crystal Structure Of A Decaprenyl Diphosphate Synth | 1e-18 | ||
| 3ipi_A | 295 | Crystal Structure Of A Geranyltranstransferase From | 3e-17 | ||
| 3rmg_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 5e-17 | ||
| 3lmd_A | 360 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 8e-17 | ||
| 3qkc_B | 273 | Crystal Structure Of Geranyl Diphosphate Synthase S | 8e-16 | ||
| 3oab_B | 264 | Mint Deletion Mutant Of Heterotetrameric Geranyl Py | 1e-15 | ||
| 3aq0_A | 348 | Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L | 6e-14 | ||
| 3apz_A | 348 | Apo Form Of Arabidopsis MediumLONG-Chain Length Pre | 6e-14 | ||
| 3lk5_A | 380 | Crystal Structure Of Putative Geranylgeranyl Pyroph | 1e-11 | ||
| 3tc1_A | 315 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 9e-11 | ||
| 2azl_A | 299 | Crystal Structure For The Mutant F117e Of Thermotog | 8e-10 | ||
| 1v4h_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-09 | ||
| 1vg2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-09 | ||
| 1v4e_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-09 | ||
| 1wmw_A | 330 | Crystal Structure Of Geranulgeranyl Diphosphate Syn | 2e-09 | ||
| 1vg4_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-09 | ||
| 1v4i_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-09 | ||
| 1vg6_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-09 | ||
| 1v4j_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-09 | ||
| 1wl0_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 5e-09 | ||
| 1wkz_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 5e-09 | ||
| 1vg7_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-09 | ||
| 1vg3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-09 | ||
| 3pko_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 7e-09 | ||
| 3n3d_A | 335 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 7e-09 | ||
| 1v4k_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 7e-09 | ||
| 1wl2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-08 | ||
| 1wl3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-08 | ||
| 2q80_A | 301 | Crystal Structure Of Human Geranylgeranyl Pyrophosp | 5e-07 | ||
| 2azk_A | 289 | Crystal Structure For The Mutant W136e Of Sulfolobu | 2e-06 | ||
| 2azj_A | 289 | Crystal Structure For The Mutant D81c Of Sulfolobus | 1e-05 | ||
| 4fp4_A | 285 | Crystal Structure Of Isoprenoid Synthase A3mx09 (Ta | 3e-05 | ||
| 1wl1_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-04 |
| >pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 | Back alignment and structure |
|
| >pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 | Back alignment and structure |
| >pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 | Back alignment and structure |
| >pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 | Back alignment and structure |
| >pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 | Back alignment and structure |
| >pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 | Back alignment and structure |
| >pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 | Back alignment and structure |
| >pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 | Back alignment and structure |
| >pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 | Back alignment and structure |
| >pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 | Back alignment and structure |
| >pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 | Back alignment and structure |
| >pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 | Back alignment and structure |
| >pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 | Back alignment and structure |
| >pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 | Back alignment and structure |
| >pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 | Back alignment and structure |
| >pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 | Back alignment and structure |
| >pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 | Back alignment and structure |
| >pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 | Back alignment and structure |
| >pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 | Back alignment and structure |
| >pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 | Back alignment and structure |
| >pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 | Back alignment and structure |
| >pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 | Back alignment and structure |
| >pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 | Back alignment and structure |
| >pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 | Back alignment and structure |
| >pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 | Back alignment and structure |
| >pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 | Back alignment and structure |
| >pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 | Back alignment and structure |
| >pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 | Back alignment and structure |
| >pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 274 | Back alignment and structure |
| >pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 | Back alignment and structure |
| >pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 | Back alignment and structure |
| >pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 | Back alignment and structure |
| >pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 | Back alignment and structure |
| >pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small Subunit From Antirrhinum Majus Length = 273 | Back alignment and structure |
| >pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Ligands Length = 264 | Back alignment and structure |
| >pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 | Back alignment and structure |
| >pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 | Back alignment and structure |
| >pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 | Back alignment and structure |
| >pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 | Back alignment and structure |
| >pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga Maritima Octaprenyl Pyrophosphate Synthase Length = 299 | Back alignment and structure |
| >pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F52a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima Length = 299 | Back alignment and structure |
| >pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 | Back alignment and structure |
| >pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima V73y Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R44a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123AD62A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 | Back alignment and structure |
| >pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 | Back alignment and structure |
| >pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 | Back alignment and structure |
| >pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R91a Mutant Length = 299 | Back alignment and structure |
| >pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Bound To Ggpp Length = 301 | Back alignment and structure |
| >pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target Efi-501993) From Pyrobaculum Calidifontis Length = 285 | Back alignment and structure |
| >pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima H74a Mutant Length = 299 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 | Back alignment and structure |
|---|
Score = 442 bits (1138), Expect = e-156
Identities = 114/333 (34%), Positives = 171/333 (51%), Gaps = 12/333 (3%)
Query: 29 RAPIFRFKLFSKKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAV----- 83
R+ F + + R A + + FE + A + L +
Sbjct: 8 RSRCCAFGITKRFACIRPAC----QRARMDAQMTNFETRLRENAAKTEALLGHLLSGEAR 63
Query: 84 --VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141
+ P + +AMR+ +L GGKR+RP L I S L+GGD + ALE +H SL+
Sbjct: 64 ADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLV 123
Query: 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIA 201
HDDLP +D+D+ RR +P H F E+TAILAGD+LL+LA + +A + ++ +R +
Sbjct: 124 HDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVI 183
Query: 202 EMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIE 261
+ A G+ G+ G+ +D+A+E K + + KT LL A GA+I G N E
Sbjct: 184 SLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAE 243
Query: 262 VERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAG 321
+R+R + IGL FQ+ DD+LD+T + +GK GKD A GK T L G A+
Sbjct: 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303
Query: 322 ELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
E + +A E LA + KAA L A +IA R++
Sbjct: 304 EQVAEASELLAPYGE-KAAILIAAARFIAERKS 335
|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| 3ts7_A | 324 | Geranyltranstransferase; isoprenoid synthesis, far | 100.0 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 100.0 | |
| 3lsn_A | 304 | Geranyltranstransferase; structural genomics, prot | 100.0 | |
| 2h8o_A | 335 | Geranyltranstransferase; geranyltransferase,agroba | 100.0 | |
| 3lom_A | 313 | Geranyltranstransferase; geranyltransferase, struc | 100.0 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 100.0 | |
| 3p8l_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 1rqj_A | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 100.0 | |
| 3p8r_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 3uca_A | 324 | Geranyltranstransferase; isoprenoid synthesis, iso | 100.0 | |
| 3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphospha | 100.0 | |
| 1rtr_A | 301 | Geranyltranstransferase; 2.50A {Staphylococcus aur | 100.0 | |
| 3llw_A | 311 | Geranyltranstransferase (ISPA); structural genomic | 100.0 | |
| 3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl sy | 100.0 | |
| 2j1p_A | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 100.0 | |
| 3npk_A | 291 | Geranyltranstransferase; isoprene biosynthesis, SG | 100.0 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 100.0 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 100.0 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 100.0 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 4dhd_A | 358 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 100.0 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 100.0 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 100.0 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 100.0 | |
| 3apz_A | 348 | Geranyl diphosphate synthase; prenyltransferase, a | 100.0 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 100.0 | |
| 3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural | 100.0 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 100.0 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 100.0 | |
| 3tc1_A | 315 | Octaprenyl pyrophosphate synthase; all alpha-helic | 100.0 | |
| 2qis_A | 374 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 100.0 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 100.0 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 100.0 | |
| 1yhl_A | 362 | Farnesyl pyrophosphate synthase; farnesyl diphosph | 100.0 | |
| 2ihi_A | 395 | Pyrophosphate synthase; PV092040, structural genom | 100.0 | |
| 1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, i | 100.0 | |
| 3dyh_A | 390 | Farnesyl pyrophosphate synthase; protein-bisphosph | 100.0 | |
| 3kra_B | 274 | Geranyl diphosphate synthase small subunit; prenyl | 100.0 | |
| 3mav_A | 395 | Farnesyl pyrophosphate synthase; PV092040, structu | 100.0 | |
| 2her_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3qkc_B | 273 | Geranyl diphosphate synthase small subunit; struct | 100.0 | |
| 2q58_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 4hd1_A | 294 | Squalene synthase HPNC; MCSG, structural genomics, | 95.53 | |
| 3vj8_A | 343 | Squalene synthase; farnesyl-diphosphate farnesyltr | 95.05 | |
| 3acx_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 94.62 | |
| 3kb9_A | 382 | EPI-isozizaene synthase; terpenoid cyclase, alpha- | 89.17 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 88.36 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 86.41 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 85.58 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 84.17 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 83.29 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 83.13 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 83.04 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 82.96 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 82.59 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 82.46 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 81.89 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 81.23 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 81.0 | |
| 1ps1_A | 337 | Pentalenene synthase; antibiotic biosynthesis, ses | 80.79 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 80.7 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 80.01 |
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-71 Score=531.48 Aligned_cols=295 Identities=41% Similarity=0.652 Sum_probs=261.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 037716 59 LPTFPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIH 136 (354)
Q Consensus 59 ~~~~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH 136 (354)
++.++|..+++.....|++.|.+.++.. .|..+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||
T Consensus 4 ~~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH 83 (324)
T 3ts7_A 4 NPERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIH 83 (324)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999763 46789999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhhhhh
Q 037716 137 TMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNI-AGVSPDRVVRAIAEMCSAMGVEGLVAG 215 (354)
Q Consensus 137 ~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~i~~l~~a~g~~~~~~G 215 (354)
+|||||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+|+.|
T Consensus 84 ~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~G 163 (324)
T 3ts7_A 84 VYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGG 163 (324)
T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999863 244566678899999998887899999
Q ss_pred hhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCC
Q 037716 216 EFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGK 294 (354)
Q Consensus 216 Q~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK 294 (354)
|.+|+.+....+++++|.+|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 164 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK 243 (324)
T 3ts7_A 164 QAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGK 243 (324)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC
Confidence 99999998777899999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 295 TAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 295 ~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+.|+|+++||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|++
T Consensus 244 ~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 244 TRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRELARFIIQRQS 302 (324)
T ss_dssp ---------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG-GGHHHHHHHHHHHHTSS
T ss_pred CccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999976 37899999999999974
|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* | Back alignment and structure |
|---|
| >3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} | Back alignment and structure |
|---|
| >2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* | Back alignment and structure |
|---|
| >3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 354 | ||||
| d1rqja_ | 299 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 1e-62 | |
| d1rtra_ | 290 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 3e-54 | |
| d1v4ea_ | 280 | a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th | 3e-27 | |
| d2q80a1 | 291 | a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s | 3e-27 | |
| d1fpsa_ | 348 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 4e-24 |
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Farnesyl diphosphate synthase (geranyltranstransferase) species: Escherichia coli [TaxId: 562]
Score = 200 bits (508), Expect = 1e-62
Identities = 112/295 (37%), Positives = 159/295 (53%), Gaps = 6/295 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F + + +Q N+AL + P + + M+Y L GGKR+RP L A+ + G
Sbjct: 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVS 62
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
+ A A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA
Sbjct: 63 TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122
Query: 182 EHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKT 240
++ ++ VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT
Sbjct: 123 SILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKT 182
Query: 241 A-KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
+ A + G + + YA IGL FQV DDILDV + LGK G D
Sbjct: 183 GALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 242
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
GK+TYP L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 243 QQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1rtra_ | 290 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 100.0 | |
| d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga mariti | 100.0 | |
| d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 96 | 96.49 | |
| d1kiya_ | 354 | Trichodiene synthase {Fusarium sporotrichioides [T | 88.44 | |
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 84.29 |
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Farnesyl diphosphate synthase (geranyltranstransferase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-64 Score=479.38 Aligned_cols=293 Identities=40% Similarity=0.595 Sum_probs=267.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 139 (354)
|+|.++++..++.|++.|.+.++.. .+..+.++++|.+.+||||+||.+++++++++|++.+.+.++|+++||+|+||
T Consensus 1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKrlRp~l~~~~~~~~g~~~~~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhhCCcccHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 6899999999999999999998653 23359999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
||||||+++|+++.|||+||+|.+||++.|||+||+|++.++..++++.. .......+.++.+++.+.|..++++||.+
T Consensus 81 LiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~GQ~l 160 (299)
T d1rqja_ 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999977788899999999999999999999999999999999998753 23456677888888888777889999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
|+.+.....+.++|..|+.+|||+||.++|.+|+.+++ .+++..+.+++||.++|++|||+||++|++++++.+|||.|
T Consensus 161 dl~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~~~~~GK~~g 240 (299)
T d1rqja_ 161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHHhccCcccHHHHHHHHHHHHhhHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCchh
Confidence 99987767899999999999999999999999887654 55666788999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHhccC
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE--ASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~--~~~~~~L~~l~~~~~~R~~ 354 (354)
+|+++||+|||++++++++++.++++.+++++.|+.++ +..++.|..+++|+++|++
T Consensus 241 ~Dl~egK~Tlp~i~~le~a~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~K 299 (299)
T d1rqja_ 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999983 3456899999999999986
|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|