Citrus Sinensis ID: 040427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF
ccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccccHHHHHcccccccccccccccccccccc
cccHHHccccccccccccccccccHHHHHHHHHHHcccccHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHcHHcccccccHHHHHHHHHHHccccccccccccccEEEEcccc
mpsipeepllapnpdrfcmfpiqypQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVegiffsgsFCAIFWLkkrglmpgltfsnelisrdeglhcDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDalpcalvgmngeLMSQYIEFVADRLLGALGygklygvanpfdWMELISLQGKTNFFEKRVGEYQKASVMSslngnggnhvfkidedf
mpsipeepllapnpdRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASvmsslngnggnhvfkidedf
MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRllgalgygklygVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF
**************DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELI****************************************
****PEE**LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEY**********GNGGNHVFKIDEDF
MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF
******EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMS*****************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
P49730329 Ribonucleoside-diphosphat N/A no 1.0 1.0 0.887 1e-174
Q6Y657333 Putative ribonucleoside-d yes no 1.0 0.987 0.822 1e-166
Q9LSD0332 Ribonucleoside-diphosphat yes no 1.0 0.990 0.852 1e-164
P50651341 Ribonucleoside-diphosphat no no 0.984 0.950 0.756 1e-145
Q4KLN6390 Ribonucleoside-diphosphat yes no 0.984 0.830 0.696 1e-134
P79733386 Ribonucleoside-diphosphat yes no 0.981 0.836 0.698 1e-133
P11157390 Ribonucleoside-diphosphat yes no 0.984 0.830 0.683 1e-132
P07201384 Ribonucleoside-diphosphat N/A no 0.978 0.838 0.700 1e-132
Q60561386 Ribonucleoside-diphosphat N/A no 0.972 0.829 0.686 1e-132
O57175319 Ribonucleoside-diphosphat yes no 0.966 0.996 0.699 1e-131
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/329 (88%), Positives = 305/329 (92%)

Query: 1   MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADE 60
           MP IPEEPLLA +PDRFCMFPIQYPQIWEMYKKA ASFWTAEEVDLS D RHWE LT  E
Sbjct: 1   MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGE 60

Query: 61  KHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120
           +HF+THVLAFFAASDGIVLENLAGRFM EVQVAEARAFYGFQIAIENIHSEMYSLLLE+Y
Sbjct: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 120

Query: 121 IKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIF 180
           IKDSDEK+RLF A+ET PCV KKA WAL WIDGSETFAERL+AFACVEGIFFSGSFCAIF
Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRWIDGSETFAERLVAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL+EERVK +V +AVEIEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLTEERVKGIVADAVEIEREFV 240

Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEK 300
           CDALPCALVGMNG+LMS+YIEFVADRLL ALGY KLY   NPFDWMELISLQGKTNFFEK
Sbjct: 241 CDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYNAQNPFDWMELISLQGKTNFFEK 300

Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
           RVGEYQKASVMSSLNGNG  H FK+DEDF
Sbjct: 301 RVGEYQKASVMSSLNGNGATHEFKLDEDF 329
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1 Back     alignment and function description
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1 Back     alignment and function description
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2 Back     alignment and function description
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1 Back     alignment and function description
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1 Back     alignment and function description
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1 Back     alignment and function description
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2 Back     alignment and function description
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1 Back     alignment and function description
>sp|O57175|RIR2_VACCA Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
255536887329 ribonucleoside-diphosphate reductase sma 1.0 1.0 0.911 1e-180
224129040329 predicted protein [Populus trichocarpa] 1.0 1.0 0.914 1e-179
225451453329 PREDICTED: ribonucleoside-diphosphate re 1.0 1.0 0.896 1e-178
224055741329 predicted protein [Populus trichocarpa] 1.0 1.0 0.908 1e-177
356571527329 PREDICTED: ribonucleoside-diphosphate re 1.0 1.0 0.887 1e-175
449455910329 PREDICTED: ribonucleoside-diphosphate re 1.0 1.0 0.884 1e-175
449492913329 PREDICTED: LOW QUALITY PROTEIN: ribonucl 1.0 1.0 0.881 1e-174
356558708330 PREDICTED: ribonucleoside-diphosphate re 1.0 0.996 0.878 1e-173
356505372329 PREDICTED: ribonucleoside-diphosphate re 1.0 1.0 0.881 1e-173
1710401329 RecName: Full=Ribonucleoside-diphosphate 1.0 1.0 0.887 1e-173
>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/329 (91%), Positives = 318/329 (96%)

Query: 1   MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADE 60
           MP+IPEEPLLAPNPDRFCMFPIQYP+IWEMYKKAEASFWTAEEVDLSQDLRHWE+LT DE
Sbjct: 1   MPAIPEEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWESLTPDE 60

Query: 61  KHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120
           KHF++HVLAFFAASDGIVLENLAGRFM EVQVAEARAFYGFQIAIENIHSEMYSLLLETY
Sbjct: 61  KHFISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 121 IKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIF 180
           IKDS+EKNRLFHAIETVPC+AKKA WAL WIDGSE+FAER+IAFACVEGIFFSGSFCAIF
Sbjct: 121 IKDSNEKNRLFHAIETVPCIAKKAEWALKWIDGSESFAERIIAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFACL+YSLL+ KLSEERVK +V++AV IEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLKKKLSEERVKGIVRDAVNIEREFV 240

Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEK 300
           CDALPCALVGMNGELMSQYIEFVADRLLGALG GK Y V+NPFDWMELISLQGKTNFFEK
Sbjct: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNVSNPFDWMELISLQGKTNFFEK 300

Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
           RVGEYQKA+VMSS+NGNGG HVFK+DEDF
Sbjct: 301 RVGEYQKAAVMSSINGNGGTHVFKMDEDF 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa] gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451453|ref|XP_002269951.1| PREDICTED: ribonucleoside-diphosphate reductase small chain [Vitis vinifera] gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa] gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571527|ref|XP_003553928.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] Back     alignment and taxonomy information
>gi|449455910|ref|XP_004145693.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449492913|ref|XP_004159139.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase small chain-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558708|ref|XP_003547645.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356505372|ref|XP_003521465.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] Back     alignment and taxonomy information
>gi|1710401|sp|P49730.1|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2092030332 TSO2 "TSO MEANING 'UGLY' IN CH 1.0 0.990 0.819 7.1e-148
TAIR|locus:2088040341 RNR2A "ribonucleotide reductas 0.984 0.950 0.740 3.2e-129
RGD|2323655390 LOC100359539 "ribonucleotide r 0.984 0.830 0.686 4.2e-118
RGD|1598310390 Rrm2 "ribonucleotide reductase 0.984 0.830 0.683 8.8e-118
UNIPROTKB|E1BI58390 RRM2 "Uncharacterized protein" 0.984 0.830 0.674 4.9e-117
ZFIN|ZDB-GENE-990415-25386 rrm2 "ribonucleotide reductase 0.981 0.836 0.679 4.9e-117
MGI|MGI:98181390 Rrm2 "ribonucleotide reductase 0.984 0.830 0.671 1.6e-116
UNIPROTKB|I3LUY0329 RRM2 "Uncharacterized protein" 0.984 0.984 0.671 3.4e-116
UNIPROTKB|Q60561386 RRM2 "Ribonucleoside-diphospha 0.948 0.808 0.696 5.6e-116
UNIPROTKB|E1BXP4388 RRM2 "Uncharacterized protein" 0.972 0.824 0.683 2.4e-115
TAIR|locus:2092030 TSO2 "TSO MEANING 'UGLY' IN CHINESE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 272/332 (81%), Positives = 297/332 (89%)

Query:     1 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTAD 59
             MPS+PEEPLL P PDRFCMFPI YPQIWEMYKKAEASFWTAEEVDLSQD R WE +L   
Sbjct:     1 MPSMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDG 60

Query:    60 EKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLET 119
             E+HF+ HVLAFFAASDGIVLENLA RFM++VQV+EARAFYGFQIAIENIHSEMYSLLL+T
Sbjct:    61 ERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDT 120

Query:   120 YIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAI 179
             YIKD+ E++ LF AIET+PCVAKKA WA+ WIDGS+TFAER+IAFACVEGIFFSGSFC+I
Sbjct:   121 YIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSI 180

Query:   180 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREF 239
             FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY+LL+TKLSEERVK++V +AVEIEREF
Sbjct:   181 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSEERVKSIVCDAVEIEREF 240

Query:   240 VCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFE 299
             VCDALPCALVGMN +LMSQYIEFVADR            V NPFDWMELISLQGKTNFFE
Sbjct:   241 VCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVTNPFDWMELISLQGKTNFFE 300

Query:   300 KRVGEYQKASVMSSLNGNGG--NHVFKIDEDF 329
             KRVG+YQKASVMSS+NGNG   NHVF +DEDF
Sbjct:   301 KRVGDYQKASVMSSVNGNGAFDNHVFSLDEDF 332
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009186 "deoxyribonucleoside diphosphate metabolic process" evidence=IEA;ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006260 "DNA replication" evidence=IMP
GO:0006281 "DNA repair" evidence=TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0012501 "programmed cell death" evidence=IMP
GO:0051726 "regulation of cell cycle" evidence=IMP
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TAIR|locus:2088040 RNR2A "ribonucleotide reductase 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|2323655 LOC100359539 "ribonucleotide reductase M2 polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1598310 Rrm2 "ribonucleotide reductase M2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI58 RRM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-25 rrm2 "ribonucleotide reductase M2 polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:98181 Rrm2 "ribonucleotide reductase M2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUY0 RRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q60561 RRM2 "Ribonucleoside-diphosphate reductase subunit M2" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXP4 RRM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R741RIR2B_MACFA1, ., 1, 7, ., 4, ., 10.67690.97260.9116N/Ano
O46310RIR2_LEIAM1, ., 1, 7, ., 4, ., 10.66150.97560.9304N/Ano
P50650RIR2_PLAF41, ., 1, 7, ., 4, ., 10.66010.93000.8767N/Ano
P79733RIR2_DANRE1, ., 1, 7, ., 4, ., 10.69810.98170.8367yesno
Q4KLN6RIR2_RAT1, ., 1, 7, ., 4, ., 10.69600.98480.8307yesno
P49730RIR2_TOBAC1, ., 1, 7, ., 4, ., 10.88751.01.0N/Ano
P42521RIR2_DICDI1, ., 1, 7, ., 4, ., 10.64830.98170.9556yesno
P48592RIR2_DROME1, ., 1, 7, ., 4, ., 10.65650.97870.8193yesno
P11157RIR2_MOUSE1, ., 1, 7, ., 4, ., 10.68380.98480.8307yesno
Q9QTF2RIR2_RSIV1, ., 1, 7, ., 4, ., 10.56470.89960.9487N/Ano
Q9LSD0RIR2C_ARATH1, ., 1, 7, ., 4, ., 10.85241.00.9909yesno
Q6Y657RIR2B_ARATH1, ., 1, 7, ., 4, ., 10.82281.00.9879yesno
P50649RIR2_PLAFG1, ., 1, 7, ., 4, ., 10.62530.96350.9844N/Ano
P50651RIR2A_ARATH1, ., 1, 7, ., 4, ., 10.75610.98480.9501nono
P20493RIR2_VACCC1, ., 1, 7, ., 4, ., 10.69960.96650.9968yesno
P36603RIR2_SCHPO1, ., 1, 7, ., 4, ., 10.64220.98480.8286yesno
Q9DHU2RIR2_YLDV1, ., 1, 7, ., 4, ., 10.64190.96960.9815N/Ano
O57175RIR2_VACCA1, ., 1, 7, ., 4, ., 10.69960.96650.9968yesno
O15910RIR2_TRYBB1, ., 1, 7, ., 4, ., 10.67690.97560.9525N/Ano
Q60561RIR2_MESAU1, ., 1, 7, ., 4, ., 10.68690.97260.8290N/Ano
P31350RIR2_HUMAN1, ., 1, 7, ., 4, ., 10.67780.98480.8329yesno
P29883RIR2_VACCP1, ., 1, 7, ., 4, ., 10.69340.96650.9968yesno
P07201RIR2_SPISO1, ., 1, 7, ., 4, ., 10.70060.97870.8385N/Ano
Q8SRR2RIR2_ENCCU1, ., 1, 7, ., 4, ., 10.63580.96350.9753yesno
P09938RIR2_YEAST1, ., 1, 7, ., 4, ., 10.62380.97870.8070yesno
P42170RIR2_CAEEL1, ., 1, 7, ., 4, ., 10.62760.97260.8398yesno
Q4R7Q7RIR2_MACFA1, ., 1, 7, ., 4, ., 10.67470.98480.8329N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.994
3rd Layer1.17.40.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_880196
ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.2892.1
thymidylate kinase (EC-2.7.4.9) (210 aa)
   • •• 0.950
gw1.VIII.102.1
hypothetical protein (223 aa)
     •• 0.913
gw1.X.4176.1
hypothetical protein (223 aa)
     •• 0.913
eugene3.00400106
RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)
     •• 0.912
fgenesh4_pg.C_LG_XII000913
hypothetical protein (152 aa)
     •• 0.911
gw1.II.1445.1
SubName- Full=Putative uncharacterized protein; (164 aa)
     •  0.910
estExt_Genewise1_v1.C_LG_III1530
nucleoside diphosphate kinase family protein (EC-2.7.4.6) (174 aa)
     •  0.910
fgenesh4_pm.C_LG_V000114
ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)
• ••••• 0.910
estExt_fgenesh4_pg.C_LG_VII0648
ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)
• ••••• 0.908
estExt_fgenesh4_pg.C_LG_XII0928
adenylate kinase (EC-2.7.4.3) (246 aa)
     •  0.908

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 0.0
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 0.0
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 1e-141
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 1e-136
COG0208348 COG0208, NrdF, Ribonucleotide reductase, beta subu 1e-103
PRK07209369 PRK07209, PRK07209, ribonucleotide-diphosphate red 2e-52
PRK09614324 PRK09614, nrdF, ribonucleotide-diphosphate reducta 9e-51
PRK12759410 PRK12759, PRK12759, bifunctional gluaredoxin/ribon 9e-27
TIGR04171313 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate 2e-11
PRK13966324 PRK13966, nrdF2, ribonucleotide-diphosphate reduct 3e-11
PRK13965335 PRK13965, PRK13965, ribonucleotide-diphosphate red 6e-11
PRK08326311 PRK08326, PRK08326, ribonucleotide-diphosphate red 9e-11
PRK13967322 PRK13967, nrdF1, ribonucleotide-diphosphate reduct 5e-09
cd07911280 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reducta 7e-07
PRK09101376 PRK09101, nrdB, ribonucleotide-diphosphate reducta 8e-06
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information 
 Score =  710 bits (1834), Expect = 0.0
 Identities = 279/324 (86%), Positives = 296/324 (91%), Gaps = 1/324 (0%)

Query: 7   EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTH 66
           EPLLA NPDRFCMFPI+YPQIWEMYKKAEASFWTAEEVDLS DL+ WE LT DE+HF++H
Sbjct: 1   EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISH 60

Query: 67  VLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126
           VLAFFAASDGIVLENLA RFM EVQV EARAFYGFQIAIENIHSEMYSLLL+TYIKD  E
Sbjct: 61  VLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKE 120

Query: 127 KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
           K+RLF+AIET+PCVAKKA WAL WID S +FAERL+AFACVEGIFFSGSFCAIFWLKKRG
Sbjct: 121 KDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFACVEGIFFSGSFCAIFWLKKRG 180

Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPC 246
           LMPGLTFSNELISRDEGLHCDFACLLYSLL+ KLSEERVK +V EAVEIE+EFVCDALPC
Sbjct: 181 LMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240

Query: 247 ALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQ 306
           ALVGMN +LMSQYIEFVADRLL ALGY K+Y V NPFDWMELISLQGKTNFFEKRVGEYQ
Sbjct: 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQ 300

Query: 307 KASVMSSLNGN-GGNHVFKIDEDF 329
           KA VMSSLNG    NHVF +DEDF
Sbjct: 301 KAGVMSSLNGGGADNHVFSLDEDF 324

Length = 324
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class 1b, beta subunit Back     alignment and domain information
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|236242 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|153120 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 100.0
PLN02492324 ribonucleoside-diphosphate reductase 100.0
KOG1567344 consensus Ribonucleotide reductase, beta subunit [ 100.0
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 100.0
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 100.0
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 100.0
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 100.0
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 100.0
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 100.0
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 100.0
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 100.0
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 100.0
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 100.0
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 100.0
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 100.0
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 98.55
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 98.04
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 97.76
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 97.55
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 97.5
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 97.47
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 97.41
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 97.36
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.35
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 96.53
PF11266219 DUF3066: Protein of unknown function (DUF3066); In 96.31
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 95.54
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 95.32
PRK14983231 aldehyde decarbonylase; Provisional 95.15
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 94.91
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 94.48
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 94.41
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 94.32
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 94.3
PLN00179390 acyl- [acyl-carrier protein] desaturase 94.27
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 93.86
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 93.55
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 93.49
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 93.49
COG3396265 Uncharacterized conserved protein [Function unknow 93.3
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 93.16
COG1633176 Uncharacterized conserved protein [Function unknow 90.43
TIGR02158237 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subu 89.45
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 89.41
cd07908154 Mn_catalase_like Manganese catalase-like protein, 85.09
cd07908154 Mn_catalase_like Manganese catalase-like protein, 82.22
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 81.55
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 81.26
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 81.12
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.7e-87  Score=632.13  Aligned_cols=324  Identities=74%  Similarity=1.247  Sum_probs=312.3

Q ss_pred             CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427            2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN   81 (329)
Q Consensus         2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~   81 (329)
                      +.|++|+||+||++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus         7 ~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~   86 (330)
T PTZ00211          7 ENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGIVLEN   86 (330)
T ss_pred             cccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 040427           82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERL  161 (329)
Q Consensus        82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~l  161 (329)
                      +.+.+++.++.||+++++++|+++|+||+++||+++++++.|+.+++++|+++.++|.+++|++|+.+++++++++++++
T Consensus        87 ~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~l  166 (330)
T PTZ00211         87 LAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSFAERL  166 (330)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHH
Confidence            98889999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhH
Q 040427          162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC  241 (329)
Q Consensus       162 v~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~  241 (329)
                      ++++++||++||+||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|.+|++
T Consensus       167 v~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~~~~~  246 (330)
T PTZ00211        167 VAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIEREFIC  246 (330)
T ss_pred             HHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 040427          242 DALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH  321 (329)
Q Consensus       242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~  321 (329)
                      +++|++++||+.+++++||+|+||+||++||++++|+++||+|||+..+..+++||||+++|+|+|++...++    |++
T Consensus       247 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~----~~~  322 (330)
T PTZ00211        247 DALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAER----TSK  322 (330)
T ss_pred             HHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccc----ccc
Confidence            9999999999999999999999999999999999999999999998877778999999999999999776433    255


Q ss_pred             ccccCCCC
Q 040427          322 VFKIDEDF  329 (329)
Q Consensus       322 ~~~~~~~f  329 (329)
                      .|+|||||
T Consensus       323 ~~~~~~df  330 (330)
T PTZ00211        323 VFSLDADF  330 (330)
T ss_pred             cccccCCC
Confidence            79999998

>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide [] Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PRK14983 aldehyde decarbonylase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>COG3396 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1h0n_A390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 1e-129
2uw2_A332 Crystal Structure Of Human Ribonucleotide Reductase 1e-125
3hf1_A351 Crystal Structure Of Human P53r2 Length = 351 1e-123
2p1i_A349 Plasmodium Yoelii Ribonucleotide Reductase Subunit 1e-120
2vux_A326 Human Ribonucleotide Reductase, Subunit M2 B Length 1e-114
1smq_A399 Structure Of The Ribonucleotide Reductase Rnr2 Homo 1e-111
1jk0_A419 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-111
3olj_A286 Crystal Structure Of Human Ribonucleotide Reductase 1e-111
4djn_A311 Crystal Structure Of A Ribonucleotide Reductase M2 1e-109
2o1z_A311 Plasmodium Vivax Ribonucleotide Reductase Subunit R 1e-108
1jk0_B345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 6e-74
2ani_A346 Crystal Structure Of The F127y Mutant Of Ribonucleo 2e-30
4d8f_A366 Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PR 5e-30
1syy_A346 Crystal Structure Of The R2 Subunit Of Ribonucleoti 6e-30
2rcc_A346 Crystal Structure Of Putative Class I Ribonucleotid 8e-14
1mrr_A375 Substitution Of Manganese For Iron In Ribonucleotid 1e-11
1pim_A375 Dithionite Reduced E. Coli Ribonucleotide Reductase 1e-11
1xik_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 1e-11
1piy_A375 Ribonucleotide Reductase R2 Soaked With Ferrous Ion 1e-11
1pm2_A339 Crystal Structure Of Manganese Substituted R2-d84e 2e-11
2alx_A340 Ribonucleotide Reductase R2 From Escherichia Coli I 2e-11
1av8_A340 Ribonucleotide Reductase R2 Subunit From E. Coli Le 2e-11
1pfr_A340 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 4e-11
1yfd_A375 Crystal Structure Of The Y122h Mutant Of Ribonucleo 5e-11
2av8_A340 Y122f Mutant Of Ribonucleotide Reductase From Esche 6e-11
1rnr_A375 Autocatalytic Generation Of Dopa In The Engineered 8e-11
2xof_A375 Ribonucleotide Reductase Y122no2y Modified R2 Subun 1e-10
1pj0_A375 Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED 2e-10
1biq_B375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 2e-10
1rsr_A375 Azide Complex Of The Diferrous F208a Mutant R2 Subu 5e-10
1biq_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 2e-09
2r2f_A319 Ribonucleotide Reductase R2f Protein From Salmonell 1e-08
3mjo_A296 Small Subunit (R2f) Of Native Ribonucleotide Reduct 2e-08
1kgn_A329 R2f From Corynebacterium Ammoniagenes In Its Oxidis 2e-08
4dr0_A350 Crystal Structure Of Bacillus Subtilis Dimanganese( 6e-08
1uzr_A296 Crystal Structure Of The Class Ib Ribonucleotide Re 3e-07
3n37_A319 Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From 1e-06
3ee4_A323 R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCU 1e-04
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/329 (67%), Positives = 258/329 (78%), Gaps = 5/329 (1%)
Query: 2   PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEK 61
           PS+ +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+
Sbjct: 66  PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDER 125
Query: 62  HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121
           HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 126 HFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYI 185
Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIF 180
           KD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 186 KDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 245
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L  K +E+RV+ ++  AV IE+EF+
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305
Query: 241 CDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEK 300
            +ALP  L+GMN  LM QYIEFVADR            V NPFD+ME ISL+GKTNFFEK
Sbjct: 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEK 365
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
           RVGEYQ+  VMS    N   + F +D DF
Sbjct: 366 RVGEYQRMGVMS----NSTENSFTLDADF 390
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Back     alignment and structure
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 Length = 351 Back     alignment and structure
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) Length = 349 Back     alignment and structure
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Back     alignment and structure
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae Length = 399 Back     alignment and structure
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Back     alignment and structure
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit M2 (Hrrm2) Length = 286 Back     alignment and structure
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B (Rnrr2) From Homo Sapiens At 2.20 A Resolution Length = 311 Back     alignment and structure
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE 1 - High Mn) Length = 366 Back     alignment and structure
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Back     alignment and structure
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization Length = 375 Back     alignment and structure
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant Length = 375 Back     alignment and structure
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 375 Back     alignment and structure
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Back     alignment and structure
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Back     alignment and structure
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Back     alignment and structure
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Back     alignment and structure
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Back     alignment and structure
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Back     alignment and structure
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Back     alignment and structure
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Back     alignment and structure
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH FERROUS IONS At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Back     alignment and structure
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) Length = 319 Back     alignment and structure
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Back     alignment and structure
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form Length = 329 Back     alignment and structure
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii) Nrdf Length = 350 Back     alignment and structure
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Back     alignment and structure
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli Length = 319 Back     alignment and structure
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 0.0
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 0.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 0.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 0.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 1e-180
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 1e-172
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 1e-169
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 1e-163
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 1e-142
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 1e-123
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 1e-121
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 1e-117
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 1e-115
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 1e-115
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 1e-101
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
 Score =  524 bits (1352), Expect = 0.0
 Identities = 225/329 (68%), Positives = 266/329 (80%), Gaps = 5/329 (1%)

Query: 2   PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEK 61
           PS+ +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+
Sbjct: 66  PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDER 125

Query: 62  HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121
           HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 126 HFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYI 185

Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIF 180
           KD  E+  LF+AIET+PCV KKA WAL WI   E T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 186 KDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 245

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L  K +E+RV+ ++  AV IE+EF+
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305

Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEK 300
            +ALP  L+GMN  LM QYIEFVADRL+  LG+ K++ V NPFD+ME ISL+GKTNFFEK
Sbjct: 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEK 365

Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
           RVGEYQ+  VMS    N   + F +D DF
Sbjct: 366 RVGEYQRMGVMS----NSTENSFTLDADF 390
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 100.0
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 100.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 100.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 100.0
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 100.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 100.0
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 100.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 100.0
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 100.0
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 100.0
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 100.0
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 100.0
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 100.0
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 100.0
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 100.0
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 98.41
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 98.14
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 97.91
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 97.91
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 97.7
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 97.7
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 97.35
3u52_C333 Phenol hydroxylase component PHL; 4-helix bundle, 97.35
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 97.34
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 97.25
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 97.07
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 96.95
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 96.51
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 96.45
2oc5_A244 Hypothetical protein; DUF3066 family protein, stru 96.07
1otk_A249 Protein PAAC, phenylacetic acid degradation protei 92.89
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 91.09
1zpy_A95 Hypothetical protein NE0167; structural genomics, 89.66
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 88.43
3b5o_A244 CADD-like protein of unknown function; structural 84.15
3dde_A239 TENA/THI-4 protein, domain of unknown function WI 82.2
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 81.83
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
Probab=100.00  E-value=8.2e-88  Score=637.96  Aligned_cols=322  Identities=63%  Similarity=1.130  Sum_probs=253.3

Q ss_pred             CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040427            4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA   83 (329)
Q Consensus         4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~   83 (329)
                      ..+|+||++|+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++++
T Consensus        28 ~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~  107 (349)
T 2p1i_A           28 ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLA  107 (349)
T ss_dssp             -------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCH
T ss_pred             cccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 040427           84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIA  163 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~  163 (329)
                      +.+++.++.||+++++++|+++|+||+++||+|+++++.||++++++|+++.++|.|++|++|+.+++++++++++++++
T Consensus       108 ~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva  187 (349)
T 2p1i_A          108 SKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVA  187 (349)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHH
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999877789999999


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhh
Q 040427          164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA  243 (329)
Q Consensus       164 ~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~  243 (329)
                      ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.++
T Consensus       188 ~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~  267 (349)
T 2p1i_A          188 NACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICES  267 (349)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCccc
Q 040427          244 LPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVF  323 (329)
Q Consensus       244 ~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~~~  323 (329)
                      ++++++||+.+++++||+|+||+||.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++...+    +++|
T Consensus       268 l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~k~~~~~~~~----~~~~  343 (349)
T 2p1i_A          268 LPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRK----EQVF  343 (349)
T ss_dssp             SCSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCCC--------------------------------------
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhcccccCCcccCCccccccccccccCC----CCee
Confidence            899999999999999999999999999999999999999999999888888999999999999998776542    6789


Q ss_pred             ccCCCC
Q 040427          324 KIDEDF  329 (329)
Q Consensus       324 ~~~~~f  329 (329)
                      +|||||
T Consensus       344 ~~~~~f  349 (349)
T 2p1i_A          344 SLNTDF  349 (349)
T ss_dssp             ------
T ss_pred             ecCCCC
Confidence            999998
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6 Back     alignment and structure
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A* Back     alignment and structure
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217} Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1jk0a_334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 1e-103
d1w68a_281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 5e-93
d1jk0b_285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 1e-83
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 2e-83
d1mxra_339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 3e-75
d3dhza1284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 1e-67
d1r2fa_283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 2e-65
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

 Score =  305 bits (781), Expect = e-103
 Identities = 177/284 (62%), Positives = 219/284 (77%), Gaps = 2/284 (0%)

Query: 6   EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFV 64
           EEPLL  + +R  +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+  W   +  +E+ F+
Sbjct: 50  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 109

Query: 65  THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
           + VLAFFAASDGIV ENL   F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD 
Sbjct: 110 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 169

Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAERLIAFACVEGIFFSGSFCAIFWLK 183
            E   LF+AI T+P + +KA WAL WI  +   F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 170 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 229

Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
           KRG+MPGLTFSNELI RDEGLH DFACLL++ L+ K     V+ +V EAVEIE+ +  DA
Sbjct: 230 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 289

Query: 244 LPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWME 287
           LP AL+GMN +LM+QY+EFVADRLL A G  K Y V NPFD+ME
Sbjct: 290 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME 333
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 100.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 100.0
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 100.0
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 100.0
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 100.0
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 98.89
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 98.68
d2incb1322 Toluene, o-xylene monooxygenase oxygenase subunit 97.55
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 96.94
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 96.86
d1mhyb_383 Methane monooxygenase hydrolase beta subunit {Meth 96.72
d2oc5a1222 Hypothetical protein PMT1231 {Prochlorococcus mari 96.69
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 96.41
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 95.95
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 95.27
d1udda_215 Hypothetical transcriptional regulator PH1161 {Pyr 94.07
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 90.23
d1otka_244 Phenylacetic acid degradation protein PaaC {Escher 86.02
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 85.74
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 84.43
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 82.74
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

Probab=100.00  E-value=6.7e-78  Score=565.45  Aligned_cols=286  Identities=62%  Similarity=1.067  Sum_probs=276.8

Q ss_pred             CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427            3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLEN   81 (329)
Q Consensus         3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~-~L~~~Er~~~~~~l~~~~~~d~~v~~~   81 (329)
                      .+++|+||.+|+.|++++||||||+|++|+|+.++||+|+|||+++|+.||+ +||+.||++++++|++|+++|++|+++
T Consensus        47 ~~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~~Lt~~Er~~i~~il~ffa~~D~~v~~~  126 (334)
T d1jk0a_          47 MEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNEN  126 (334)
T ss_dssp             HGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred             hhcCCcccCCCCCceeEeCCcCHHHHHHHHHHHHcCCCchhccCcCCHHHHhhcCCHHHHHHHHHHHHHHHhhhHHHHhH
Confidence            5789999999999999999999999999999999999999999999999996 699999999999999999999999999


Q ss_pred             hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC-hhHHHH
Q 040427           82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAER  160 (329)
Q Consensus        82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~-~~~~~~  160 (329)
                      +...+++.++.||+++++++|+++|+||+++||+++++++.|+.+++.+|+++.+.|.+++|++|+..++.+. ..+.++
T Consensus       127 l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~  206 (334)
T d1jk0a_         127 LVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGER  206 (334)
T ss_dssp             HCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred             HHHhhhHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHCHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            9878999999999999999999999999999999999999999999999999999999999999999999654 458899


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh
Q 040427          161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV  240 (329)
Q Consensus       161 lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~  240 (329)
                      +++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++.|++++++||++|.+|+
T Consensus       207 lva~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~i~~i~~eAvelE~~~~  286 (334)
T d1jk0a_         207 LVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYF  286 (334)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHhhhhhHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhh
Q 040427          241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMEL  288 (329)
Q Consensus       241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~  288 (329)
                      .++++.+++|||.+++++||+|+||+||.+||++|+|+++||+|||+.
T Consensus       287 ~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~~NP~~wme~  334 (334)
T d1jk0a_         287 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMEN  334 (334)
T ss_dssp             HTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCCCCCGGGGC
T ss_pred             HHhCCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcccc
Confidence            999999999999999999999999999999999999999999999973
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} Back     information, alignment and structure
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Back     information, alignment and structure
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure