Citrus Sinensis ID: 044294

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
cccccccccccccccccccccccccccccccEEEEEHHccccccccccccHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHccccEEEEccccHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccc
cccccHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccHHHHHHHcccccccccHHHHHHHHHcccEEEEcccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccEEEEccccccccccEccccccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccEEcccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEccHHHHHHHHccccHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccEcccccccHHHHHHHEEEEEccEcccccccEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccc
masrdsdygAFMEKfvlqpsssahqlplsgltFAIKDifdvdghvtgfgnpdwarthsaatsTAPAVLAVLSGGATSIGKTIMDEMAYSIngenkhygtptnpcapdrvpggsssgsaVAVGAKLVdfslgtdtggsvrvpasycgifgfrpshsavstagvipmaqsfdtvgwfawdpkilNRVGRVLLQLaddvnlvrpsqvifaedclqlssipsdrvtQGLVKSVEKLFgghiienvilgdyvkdkvpsLQHFlsegnkeqeysipSLAALSSAMRLLQRYEFknnhgdwvttvkpdlgpgisERVWEAVRTSAQKIDVCQSVKTELRAALSALLgdhgilviptvpgpppklqmdpsALEVFRARAFSLLSIAGVSgfcqvsiplglhdnlPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAedclqlssipsdrvtQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSegnkeqeysIPSLAALSSAMRLLQRYEFknnhgdwvttvkpdlgpGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPggsssgsavavgaKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPslaalssamrllQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
*************KFVL*******QLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSIN***************************VAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLS*******YSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVP**********SALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNT*********
*ASRDSDYGAFMEKFV***********LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKE******
MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPD**********AVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSS********AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKE******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLKEELQRMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q9FR37425 Amidase 1 OS=Arabidopsis yes no 0.960 0.974 0.689 1e-164
F4KCL7 603 Outer envelope protein 64 no no 0.981 0.701 0.490 1e-112
Q9LVH5 589 Outer envelope protein 64 no no 0.911 0.667 0.506 1e-109
Q9MUK5 593 Translocon at the outer m N/A no 0.916 0.666 0.526 1e-109
Q8PXJ1476 Glutamyl-tRNA(Gln) amidot yes no 0.904 0.819 0.276 1e-29
Q8THJ1476 Glutamyl-tRNA(Gln) amidot yes no 0.904 0.819 0.274 3e-29
Q46E35475 Glutamyl-tRNA(Gln) amidot yes no 0.897 0.814 0.270 2e-28
Q2NHN5455 Glutamyl-tRNA(Gln) amidot yes no 0.890 0.843 0.258 8e-28
Q73Q68485 Glutamyl-tRNA(Gln) amidot yes no 0.886 0.787 0.277 7e-27
Q9JTZ5481 Glutamyl-tRNA(Gln) amidot yes no 0.835 0.748 0.274 3e-26
>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1 Back     alignment and function desciption
 Score =  577 bits (1487), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/419 (68%), Positives = 348/419 (83%), Gaps = 5/419 (1%)

Query: 5   DSDYGAFMEKFVLQPSSSAHQLP-LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATST 63
           ++D+GAF+EK  + P+S++   P L GLTFAIKDIFDV+G VTGFGNPDW RTHSAATST
Sbjct: 4   NNDFGAFIEKVTISPTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATST 63

Query: 64  APAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGA 123
           AP V ++L  GAT++G TIMDEMAYSINGEN HYGTP NP A DRVPGGSSSGSAVAV A
Sbjct: 64  APVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVAA 123

Query: 124 KLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILN 183
           +LVDFS+GTDTGGSVRVPASYCGIFGFRPSH AVST G+ PMAQSFDTVGWFA D   L 
Sbjct: 124 RLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATLK 183

Query: 184 RVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGH-IIENVI 242
           RVG VLLQ    +N + PSQ+I A+DC +L S+P D + Q LV SVEK FGG+ +++ V 
Sbjct: 184 RVGCVLLQ-QHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query: 243 LGDYVKDKVPSLQHFLSEGN--KEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKP 300
           LG+Y+   VPSL+HF++  +   +QE+ IPSL ALSS+MRLLQR+EFK NHG W+++VKP
Sbjct: 243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query: 301 DLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMD 360
           + GPGISER+ EA+RTS +KID C+SVK+EL  ALS LLG+ G+LVIPTVPGPPP LQ +
Sbjct: 303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query: 361 PSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETL 419
            +ALE FR+RAFSLLSIAGVSGFCQVSIPLGLH+NLPV++SL+AK+GSDGFLL+LV++L
Sbjct: 363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDSL 421
Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1 Back     alignment and function description
>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1 Back     alignment and function description
>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q46E35|GATA_METBF Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q2NHN5|GATA_METST Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q73Q68|GATA_TREDE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
147801313433 hypothetical protein VITISV_015334 [Viti 0.986 0.981 0.786 0.0
359487733433 PREDICTED: amidase 1-like [Vitis vinifer 0.986 0.981 0.784 0.0
255542602500 amidase, putative [Ricinus communis] gi| 0.974 0.84 0.774 0.0
224125294427 amidase family protein [Populus trichoca 0.976 0.985 0.750 0.0
356576771433 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.986 0.981 0.725 0.0
356535097433 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.983 0.979 0.722 0.0
449518011428 PREDICTED: amidase 1-like [Cucumis sativ 0.974 0.981 0.717 1e-177
449435683428 PREDICTED: amidase 1-like [Cucumis sativ 0.974 0.981 0.717 1e-177
357441631423 Glutamyl-tRNA(Gln) amidotransferase subu 0.972 0.990 0.695 1e-177
215272285425 indole-3-acetamide hydrolase [Nicotiana 0.974 0.988 0.706 1e-174
>gi|147801313|emb|CAN77023.1| hypothetical protein VITISV_015334 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/426 (78%), Positives = 382/426 (89%), Gaps = 1/426 (0%)

Query: 3   SRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATS 62
           ++ SDYGAFME+F+LQPSSS+H+LPL+GLTFA+KDIFDVDG+VTGFGNPDWARTH AA  
Sbjct: 2   AKASDYGAFMERFILQPSSSSHELPLNGLTFAVKDIFDVDGYVTGFGNPDWARTHQAAML 61

Query: 63  TAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVG 122
           TAP+VLAVL GGAT +GKT+MDEMAYSINGENKHYGTPTNP APDRVPGGSSSGSAVAVG
Sbjct: 62  TAPSVLAVLKGGATCVGKTVMDEMAYSINGENKHYGTPTNPQAPDRVPGGSSSGSAVAVG 121

Query: 123 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKIL 182
           A LVDFSLGTDTGGSVRVPASYCGIFG RPSH  VST GVIPMAQSFDTVGWFA DP+IL
Sbjct: 122 AMLVDFSLGTDTGGSVRVPASYCGIFGIRPSHGVVSTTGVIPMAQSFDTVGWFARDPEIL 181

Query: 183 NRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIENVI 242
           NRVG VLL   D VN V+PSQ+I  EDC +L SIP DRVTQ L+KSVEKLFG  I+++V 
Sbjct: 182 NRVGHVLLPFPD-VNPVKPSQIIIPEDCFRLLSIPIDRVTQVLIKSVEKLFGSDIVKHVS 240

Query: 243 LGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDL 302
           LGDYV+DKV SL+ F+S+ N+ QEY+IPSLAALS+AMRLLQRYEFKNNHG+WV  V+PDL
Sbjct: 241 LGDYVEDKVTSLKPFMSKENQTQEYNIPSLAALSTAMRLLQRYEFKNNHGEWVRAVQPDL 300

Query: 303 GPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPS 362
           GPGI ERVWEA+ T+ +KIDVCQS+KTE R+AL+ LLGD G+LV+PTVPGPPPKLQ DP+
Sbjct: 301 GPGIRERVWEALGTTDEKIDVCQSLKTEFRSALTDLLGDSGVLVLPTVPGPPPKLQTDPT 360

Query: 363 ALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNT 422
            LE FRARAFSLLSIAGVSGFCQVSIPLGL+DNLPVA+SLLAKHGSDGFLLNLV+TL+ +
Sbjct: 361 TLESFRARAFSLLSIAGVSGFCQVSIPLGLYDNLPVAVSLLAKHGSDGFLLNLVQTLYGS 420

Query: 423 LKEELQ 428
           +KE+++
Sbjct: 421 IKEQVE 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487733|ref|XP_002284823.2| PREDICTED: amidase 1-like [Vitis vinifera] gi|296088312|emb|CBI36757.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542602|ref|XP_002512364.1| amidase, putative [Ricinus communis] gi|223548325|gb|EEF49816.1| amidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224125294|ref|XP_002319550.1| amidase family protein [Populus trichocarpa] gi|222857926|gb|EEE95473.1| amidase family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576771|ref|XP_003556503.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356535097|ref|XP_003536085.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|449518011|ref|XP_004166037.1| PREDICTED: amidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449435683|ref|XP_004135624.1| PREDICTED: amidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357441631|ref|XP_003591093.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355480141|gb|AES61344.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|388518579|gb|AFK47351.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|215272285|dbj|BAG84637.1| indole-3-acetamide hydrolase [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2036029425 AMI1 "AT1G08980" [Arabidopsis 0.967 0.981 0.635 8.9e-141
UNIPROTKB|Q9MUK5 593 TOC64 "Translocon at the outer 0.962 0.699 0.477 2.5e-104
TAIR|locus:2088600 589 TOC64-III "translocon at the o 0.967 0.707 0.468 3.2e-104
TAIR|locus:2184757 603 TOC64-V "AT5G09420" [Arabidops 0.993 0.709 0.448 3.4e-93
UNIPROTKB|Q60AB7341 MCA0950 "Amidase family protei 0.296 0.375 0.519 5.9e-44
CGD|CAL0003013450 orf19.3956 [Candida albicans ( 0.445 0.426 0.338 9.4e-26
UNIPROTKB|Q936X3457 atzE "Biuret hydrolase" [Pseud 0.338 0.319 0.374 1.7e-22
UNIPROTKB|G4N3U3631 MGG_05017 "Uncharacterized pro 0.399 0.272 0.359 5.2e-20
TIGR_CMR|CBU_1474483 CBU_1474 "glutamyl-tRNA(Gln) a 0.334 0.298 0.376 1e-19
TIGR_CMR|CHY_1102485 CHY_1102 "glutamyl-tRNA(Gln) a 0.897 0.797 0.254 1.3e-19
TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 269/423 (63%), Positives = 328/423 (77%)

Query:     1 MASRDSDYGAFMEKFVLQPSSSAHQLP-LSGLTFAIKDIFDVDGHVTGFGNPDWARTHSA 59
             MA+ ++D+GAF+EK  + P+S++   P L GLTFAIKDIFDV+G VTGFGNPDW RTHSA
Sbjct:     1 MAT-NNDFGAFIEKVTISPTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSA 59

Query:    60 ATSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXX 119
             ATSTAP V ++L  GAT++G TIMDEMAYSINGEN HYGTP NP A DRVP         
Sbjct:    60 ATSTAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAV 119

Query:   120 XXXXKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDP 179
                 +LVDFS+GTDTGGSVRVPASYCGIFGFRPSH AVST G+ PMAQSFDTVGWFA D 
Sbjct:   120 AVAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDT 179

Query:   180 KILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGH-II 238
               L RVG VLLQ    +N + PSQ+I A+DC +L S+P D + Q LV SVEK FGG+ ++
Sbjct:   180 ATLKRVGCVLLQ-QHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVV 238

Query:   239 ENVILGDYVKDKVPSLQHFLSEGN--KEQEYSIPXXXXXXXXXXXXQRYEFKNNHGDWVT 296
             + V LG+Y+   VPSL+HF++  +   +QE+ IP            QR+EFK NHG W++
Sbjct:   239 KKVNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWIS 298

Query:   297 TVKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPK 356
             +VKP+ GPGISER+ EA+RTS +KID C+SVK+EL  ALS LLG+ G+LVIPTVPGPPP 
Sbjct:   299 SVKPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPH 358

Query:   357 LQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLV 416
             LQ + +ALE FR+RAFSLLSIAGVSGFCQVSIPLGLH+NLPV++SL+AK+GSDGFLL+LV
Sbjct:   359 LQANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLV 418

Query:   417 ETL 419
             ++L
Sbjct:   419 DSL 421
GO:0004040 "amidase activity" evidence=ISS;IDA
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA
GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
CGD|CAL0003013 orf19.3956 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)] Back     alignment and assigned GO terms
UNIPROTKB|G4N3U3 MGG_05017 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FR37AMI1_ARATH3, ., 5, ., 1, ., 40.68970.96050.9741yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 0.0
PRK08310395 PRK08310, PRK08310, amidase; Provisional 1e-144
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 6e-75
pfam01425431 pfam01425, Amidase, Amidase 2e-63
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 1e-46
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 1e-45
PRK09201465 PRK09201, PRK09201, amidase; Provisional 2e-45
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 8e-45
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 4e-43
PRK07056454 PRK07056, PRK07056, amidase; Provisional 4e-42
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 3e-41
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 5e-41
PRK05962424 PRK05962, PRK05962, amidase; Validated 2e-40
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 9e-40
PRK07139439 PRK07139, PRK07139, amidase; Provisional 3e-30
PRK06170490 PRK06170, PRK06170, amidase; Provisional 1e-26
PRK12470462 PRK12470, PRK12470, amidase; Provisional 4e-26
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 1e-23
PRK07235502 PRK07235, PRK07235, amidase; Provisional 2e-23
PRK06061483 PRK06061, PRK06061, amidase; Provisional 1e-20
PRK08137497 PRK08137, PRK08137, amidase; Provisional 2e-20
PRK06707536 PRK06707, PRK06707, amidase; Provisional 2e-19
PRK07486484 PRK07486, PRK07486, amidase; Provisional 3e-19
PRK07869468 PRK07869, PRK07869, amidase; Provisional 2e-18
PRK07042464 PRK07042, PRK07042, amidase; Provisional 6e-18
PRK07487469 PRK07487, PRK07487, amidase; Provisional 2e-16
PRK11910615 PRK11910, PRK11910, amidase; Provisional 8e-16
PRK06828491 PRK06828, PRK06828, amidase; Provisional 3e-15
PRK06565566 PRK06565, PRK06565, amidase; Validated 2e-10
PRK06529482 PRK06529, PRK06529, amidase; Provisional 8e-09
PRK07235502 PRK07235, PRK07235, amidase; Provisional 4e-07
PRK07056454 PRK07056, PRK07056, amidase; Provisional 0.002
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 0.002
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information 
 Score =  774 bits (2000), Expect = 0.0
 Identities = 347/422 (82%), Positives = 382/422 (90%), Gaps = 2/422 (0%)

Query: 3   SRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATS 62
           + + DYGAFMEKFVL P+SS+H LPL GLTFA+KDIFDV+G+VTGFGNPDWARTHSAATS
Sbjct: 2   ATNPDYGAFMEKFVLSPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 63  TAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVG 122
           TAPAVLAVL GGAT +GKTIMDEMAYSINGEN HYGTPTNP APDRVPGGSSSGSAVAVG
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 123 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKIL 182
           AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSH AVST GVIPMAQSFDTVGWFA DP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 183 NRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFG-GHIIENV 241
            RVG VLLQ   DVN ++PSQ+I AEDC QLSSIP DR+ Q LVKSVEKLFG G I+++V
Sbjct: 182 KRVGHVLLQQP-DVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHV 240

Query: 242 ILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPD 301
            LGDYV+DKVPSL+HF+S+  KEQEY+IPSLAALSSAMRLLQRYEFK NHG+W+T VKP+
Sbjct: 241 NLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPE 300

Query: 302 LGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDP 361
            GPGISER+WEAVRT+ +KID CQSVKTELRAAL+ LLG+ G+LVIPTVPGPPPKLQ DP
Sbjct: 301 FGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADP 360

Query: 362 SALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHN 421
           + LE FRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV++SLLAKHGSDGFLLNLVE+L+ 
Sbjct: 361 TTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYG 420

Query: 422 TL 423
           T+
Sbjct: 421 TI 422

Length = 422
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
PLN02722422 indole-3-acetamide amidohydrolase 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK08310395 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK09201465 amidase; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK12470462 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK07139439 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK08137497 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK06828491 amidase; Provisional 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK11910615 amidase; Provisional 100.0
PRK06707536 amidase; Provisional 100.0
PRK06565566 amidase; Validated 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information 
Probab=100.00  E-value=9.6e-98  Score=723.44  Aligned_cols=418  Identities=83%  Similarity=1.291  Sum_probs=344.9

Q ss_pred             CCCCCcCeeeeccccCCCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecC
Q 044294            3 SRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTI   82 (431)
Q Consensus         3 ~~~~~~~a~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~gkt~   82 (431)
                      ..|+++|||++.+..+...+...||||||||+|||||||+|++||+||+.+.+.+.++.+||++|+||++||||++||||
T Consensus         2 ~~~~~~~a~~~~~~~~~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilGKTn   81 (422)
T PLN02722          2 ATNPDYGAFMEKFVLSPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTI   81 (422)
T ss_pred             CcCCCCCcceeeccccCCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEEEec
Confidence            35779999999875532223467999999999999999999999999998875334577999999999999999999999


Q ss_pred             cCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCccCCCC
Q 044294           83 MDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGV  162 (431)
Q Consensus        83 ~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~  162 (431)
                      |+||+++..|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|||||||||||||+|+||++|+
T Consensus        82 ~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~~G~  161 (422)
T PLN02722         82 MDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGV  161 (422)
T ss_pred             hhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCCCCCCceEEEecchhhccCCCchHHHHHHHHHHHHHh--CCcceee
Q 044294          163 IPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLF--GGHIIEN  240 (431)
Q Consensus       163 ~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~  240 (431)
                      +|+++++|++|||||+++|++.+++++.+.+ ..+...+.++.+..+.+......++++.+.+.+.++.+.  |+.+ +.
T Consensus       162 ~pla~sld~~G~~ar~v~D~a~~~~~l~g~~-~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v-~~  239 (422)
T PLN02722        162 IPMAQSFDTVGWFARDPVILKRVGHVLLQQP-DVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV-KH  239 (422)
T ss_pred             CcccCCCCcccceeCCHHHHHHHHHHHcCCC-CCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee-ee
Confidence            9999999999999999999999999987643 555566778888765442112234667778888888776  4444 33


Q ss_pred             eeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCCCHHHHHHHHHhhcCCHHH
Q 044294          241 VILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQK  320 (431)
Q Consensus       241 ~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~s~~~  320 (431)
                      .++...++...+.+..+...+....+..++.+..+...+..+..++.+..+..|++.....+++.++.+++.+..++..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~~~  319 (422)
T PLN02722        240 VNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTEEK  319 (422)
T ss_pred             cchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCHHH
Confidence            33332333333344333323222333344444445555566777777777888887777789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCCCcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEE
Q 044294          321 IDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAI  400 (431)
Q Consensus       321 ~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGl  400 (431)
                      |.++++.|+++++++.++|+++|+||+||+|.+||+++........+...++.+|.++|++|+|+||||+|..+|||+||
T Consensus       320 y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGl  399 (422)
T PLN02722        320 IDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSV  399 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCEEE
Confidence            99999999999999999999999999999999999887433333344445567899999999999999999989999999


Q ss_pred             EEecCCCChHHHHHHHHHHHHH
Q 044294          401 SLLAKHGSDGFLLNLVETLHNT  422 (431)
Q Consensus       401 qivg~~~~D~~LL~~A~~lE~~  422 (431)
                      ||+|++++|..||++|++|...
T Consensus       400 qivg~~~~D~~lL~~a~~l~~~  421 (422)
T PLN02722        400 SLLAKHGSDGFLLNLVESLYGT  421 (422)
T ss_pred             EEECCCCChHHHHHHHHHHHhh
Confidence            9999999999999999998754

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 5e-20
2dc0_A434 Crystal Structure Of Amidase Length = 434 3e-18
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 4e-17
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 3e-04
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 2e-15
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 2e-14
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 4e-14
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 6e-14
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 1e-13
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-13
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 3e-11
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 3e-11
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 3e-10
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 3e-10
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 3e-10
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 8e-10
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 1e-09
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 1e-09
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 6e-07
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 8e-07
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-06
2wap_A543 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 2e-05
2vya_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Con 2e-05
2wj1_A573 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 2e-05
4hbp_A550 Crystal Structure Of Faah In Complex With Inhibitor 3e-05
1mt5_A537 Crystal Structure Of Fatty Acid Amide Hydrolase Len 4e-05
4do3_A571 Structure Of Faah With A Non-steroidal Anti-inflamm 4e-05
3qk5_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Wit 5e-05
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 175/434 (40%), Gaps = 66/434 (15%)
Query: 20  SSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIG 79
           S    +LPL G+  A+KD   V+G  T   +      +  A   A  +  +   GA  +G
Sbjct: 56  SLKERELPLFGIPIAVKDNILVEGEKTTCASK--ILENFVAPYDATVIERLKKAGALIVG 113
Query: 80  KTIMDEMAYSINGENKHYGTPTNPCAPDRVPXXXXXXXXXXXXXKLVDFSLGTDTGGSVR 139
           KT +DE A   + E   +    NP   +RVP                  SLG+DTGGS+R
Sbjct: 114 KTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIR 173
Query: 140 VPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLV 199
            PAS+CG+ G +P++  VS  G++  A S D +G F               +  +DV LV
Sbjct: 174 QPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFG--------------RRTEDVALV 219
Query: 200 RPSQVIFAEDCLQLSSIPSDRVTQGLVKSVEKLFGGHIIE--NVILGDYVKDKVPSLQHF 257
                 + E     + +P    ++ + K V+ L  G   E     L   VK+   + ++F
Sbjct: 220 LEVISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKE---AFENF 276
Query: 258 LSEGNKEQ-----------EYSIPXXXXXXXXXXXXQ--RY----------EFKNNHGDW 294
           + E  KE            +YSIP               RY          E+K+    +
Sbjct: 277 IKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMY 336
Query: 295 VTTVKPDLGPGISERV-----------WEAVRTSAQKIDVCQSVKTELRAALSALLGDHG 343
             T     GP +  R+           ++A    AQK  V + +  +   A   +     
Sbjct: 337 ARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQK--VRRLITNDFLKAFEEV----D 390
Query: 344 ILVIPTVPGPPPKL-QMDPSALEVFRARAFSLLSI-AGVSGFCQVSIPLGLHDNLPVAIS 401
           ++  PT P  P K  +   + +E++ +    +L++ A ++G   +SIP+   D LPV   
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLS---DILTVPANLAGLPAISIPIAWKDGLPVGGQ 447
Query: 402 LLAKHGSDGFLLNL 415
           L+ KH  +  LL +
Sbjct: 448 LIGKHWDETTLLQI 461
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543 Back     alignment and structure
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587 Back     alignment and structure
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573 Back     alignment and structure
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550 Back     alignment and structure
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Length = 537 Back     alignment and structure
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory Drug Length = 571 Back     alignment and structure
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small Molecule Inhibitor Length = 587 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 5e-64
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 6e-55
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 5e-49
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 2e-40
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 3e-40
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 7e-37
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 4e-05
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-36
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-04
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 6e-35
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 6e-35
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 8e-35
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 8e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
 Score =  210 bits (537), Expect = 5e-64
 Identities = 93/429 (21%), Positives = 164/429 (38%), Gaps = 47/429 (10%)

Query: 1   MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAA 60
           + +R+ +  AF+     + + +    PL G+   IKDI D     T  G+  +      +
Sbjct: 29  IEAREKEVHAFV--RHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRS 86

Query: 61  TSTAPAVLAVLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVA 120
            +    +L     GAT IGKT     A              NP      PGG+SSGSA A
Sbjct: 87  DAPVVMMLK--RAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGASSGSAAA 138

Query: 121 VGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPK 180
           VGA ++  +LGT TGGSV  PA+YCG    +PS   + T GV   + + DTVG F     
Sbjct: 139 VGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGAR-- 196

Query: 181 ILNRVGRVLLQLADDVNLVRPSQVIFAEDCLQLSSIPSD-RVTQGLVKSVEKLFGGHIIE 239
                       A+D+        +               R+  G+V+     F G +  
Sbjct: 197 ------------AEDLARG--LLAMTGRSEFSGIVPAKAPRI--GVVRQ---EFAGAVEP 237

Query: 240 NVILGDYVKDKV-PSLQHFLSEGNKEQEYSIPS-LAALSSAMRLLQRYEFKNNHGDWVTT 297
                   +  +  +++     G   Q   +P  +        ++Q +E         + 
Sbjct: 238 A------AEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSE 291

Query: 298 VKPDLGPGISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKL 357
              ++ P +   +   V  + ++ D  + +    R  L  +     +L+  + PG  P  
Sbjct: 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAK 351

Query: 358 QMDPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVE 417
            +  +    +  R ++L+      G   V++P+     LP+ + ++A+ G+D   L    
Sbjct: 352 ALASTGDPRY-NRLWTLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAW 404

Query: 418 TLHNTLKEE 426
            L + L + 
Sbjct: 405 FLEDALAKS 413
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=2.2e-95  Score=712.06  Aligned_cols=386  Identities=27%  Similarity=0.358  Sum_probs=325.9

Q ss_pred             CCCCCCCcCeeeeccccC-----------CCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHH
Q 044294            1 MASRDSDYGAFMEKFVLQ-----------PSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLA   69 (431)
Q Consensus         1 ~~~~~~~~~a~~~~~~~~-----------~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~r   69 (431)
                      |+++|+ +|||++..+++           .++++..||||||||+|||||+++|++||+||+.|  + .++.+||++|+|
T Consensus        28 i~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~--~-~~a~~dA~vV~r  103 (434)
T 2dc0_A           28 AKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP--L-PPLPEEARAVRR  103 (434)
T ss_dssp             HHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC--C-CCCCSSCHHHHH
T ss_pred             HHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc--C-CCCCCCHHHHHH
Confidence            456799 99999876432           13466789999999999999999999999999998  2 233899999999


Q ss_pred             HHhCCCeEEeecCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCccccccccccccc
Q 044294           70 VLSGGATSIGKTIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFG  149 (431)
Q Consensus        70 L~~aGaii~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~G  149 (431)
                      ||+|||||+||||||||+++.+++|++||+|+||||+.|+|||||||||||||+|++|+|+|||||||||+||+||||||
T Consensus       104 L~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~G  183 (434)
T 2dc0_A          104 LREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG  183 (434)
T ss_dssp             HHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEE
T ss_pred             HHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccCCCCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCCC--CCCceEEEecchhhccCCCchHHHHHHHH
Q 044294          150 FRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNL--VRPSQVIFAEDCLQLSSIPSDRVTQGLVK  227 (431)
Q Consensus       150 lkPt~G~v~~~G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (431)
                      ||||+||||+.|++|+++++|++|||+||++|++.+++++.+.  ..|+  .++.||++..+.+.  ...++++.+.+++
T Consensus       184 lKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~--~~d~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~  259 (434)
T 2dc0_A          184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE--SIPLEGVQNPVFGVPLDFLE--GRLGVEVRKAFTR  259 (434)
T ss_dssp             EECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS--CCCCCCCCSCEEEECHHHHT--TCSCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC--CCCcccccCCEEEEECcccc--CCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999998764  2332  34568888766432  3357889999999


Q ss_pred             HHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCCCHH
Q 044294          228 SVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPG  305 (431)
Q Consensus       228 a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~  305 (431)
                      +++.|.  |+++++ .        .+| ++..                  ...+..+...|.+..+.+++......+++.
T Consensus       260 a~~~L~~~G~~v~~-~--------~~p-~~~~------------------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  311 (434)
T 2dc0_A          260 LLEDLPALRAEVRE-V--------SLP-LEGV------------------YEVYTRLVRYEAARIHEKALKEHPEGFSPQ  311 (434)
T ss_dssp             HHHHTTTTTCEEEE-C--------CCC-CTTH------------------HHHHHHHHHHHHHHHSHHHHHHCGGGSCHH
T ss_pred             HHHHHHHCCCEEEE-e--------CCC-cHHH------------------HHHHHHHHHHHHHHHHHHHHHhchhhcCHH
Confidence            998886  655522 1        122 2111                  112223444566556666666666678999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCCCcc-----hHHHHHHhhhhhhccccc
Q 044294          306 ISERVWEAVRTSAQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPS-----ALEVFRARAFSLLSIAGV  380 (431)
Q Consensus       306 ~~~~l~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~-----~~~~~~~~~~~~t~~~nl  380 (431)
                      ++.++..+..++..+|.++++.|+++++++.++|+++|+||+||++.+||+++....     ....+ ..+..||.++|+
T Consensus       312 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl  390 (434)
T 2dc0_A          312 VREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHR-EAFITLTLPFSL  390 (434)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHH-HHHHTTTHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhh-hhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999886521     01111 233568999999


Q ss_pred             CCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHH
Q 044294          381 SGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTL  423 (431)
Q Consensus       381 ~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~  423 (431)
                      +|+|++|||+|+.+|||+||||+|++|+|..||++|++||+.+
T Consensus       391 ~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~  433 (434)
T 2dc0_A          391 LGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEARL  433 (434)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             hCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence            9999999999988899999999999999999999999999764
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 1e-55
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 2e-54
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 1e-29
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 3e-26
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 5e-24
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  189 bits (480), Expect = 1e-55
 Identities = 94/400 (23%), Positives = 169/400 (42%), Gaps = 15/400 (3%)

Query: 27  PLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGKTIMDEM 86
              G+  AIKD     G  T   +      +  +   A  V  +   G   +GK  +DE 
Sbjct: 57  KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114

Query: 87  AYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG 146
           A   + E   +    NP   +RVPGGSS GSA AV A +V  +LG+DTGGSVR PAS CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174

Query: 147 IFGFRPSHSAVSTAGVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVNLVRPSQVIF 206
           + G++P++  VS  G++  A S D +G      +    +  ++    ++       +V F
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDF 234

Query: 207 AEDCLQLSS-----IPSDRVTQGLVKSVEKLFGGHIIENVILGDYVKD-KVPSLQHFLSE 260
             +  +  S     +P +     + + V + F   +     LG  V+  K+P +++ ++ 
Sbjct: 235 LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVAT 294

Query: 261 GNKEQEYSIPSLAALSSAMRLLQRYEFKNNHGDWVTTVKPDLGPGISERVWEAVRTSAQK 320
                     S  A    ++   R + K     ++ T     G  +  R+     T +  
Sbjct: 295 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354

Query: 321 I-----DVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQMDPSALEVFRARAFSLL 375
                 +    V+ ++   L+ +L  +  ++ PT P    K+      L  +    F+  
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT-- 412

Query: 376 SIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNL 415
             A ++G   +S+P G  +NLPV + ++ +  +DG +  +
Sbjct: 413 IPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRI 452
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-90  Score=691.13  Aligned_cols=388  Identities=23%  Similarity=0.338  Sum_probs=309.9

Q ss_pred             CCCCCCCcCeeeeccccCCCCCCCCCCCccceEEEeeccccCCccCCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEee
Q 044294            1 MASRDSDYGAFMEKFVLQPSSSAHQLPLSGLTFAIKDIFDVDGHVTGFGNPDWARTHSAATSTAPAVLAVLSGGATSIGK   80 (431)
Q Consensus         1 ~~~~~~~~~a~~~~~~~~~~~~~~~~pL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~rL~~aGaii~gk   80 (431)
                      |+++||.||||++..+++  +...+||||||||+|||||+++|++||+||..|+++  ++++||++|+|||+|||||+||
T Consensus        33 i~~~~~~lna~~~~~~~~--a~~~~gpL~GvPi~vKD~~~~~g~~tt~Gs~~~~~~--~~~~da~~v~~L~~aGaii~Gk  108 (475)
T d2gi3a1          33 IKRLDPHVKAFISVRENV--SVEKKGKFWGIPVAIKDNILTLGMRTTCASRILENY--ESVFDATVVKKMKEAGFVVVGK  108 (475)
T ss_dssp             HHHHHHHHCCEEEECCCC--CCCCCSTTTTCEEEEETTBCCSSSCCCTTCGGGTTC--CCCSCCHHHHHHHHHTCEEEEE
T ss_pred             HHHHCCcCCEEEEcCHHH--hhhccCCCCCCEEEEEcccCCCCCccCccChhhcCC--CCCCCcceeeehhhcCCccccc
Confidence            567899999999987663  234568999999999999999999999999999864  7899999999999999999999


Q ss_pred             cCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhcCCCceeeeccCCCcccccccccccccccCCCCCccCC
Q 044294           81 TIMDEMAYSINGENKHYGTPTNPCAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHSAVSTA  160 (431)
Q Consensus        81 t~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS~Gsaaavaag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~  160 (431)
                      ||||||+++.+++|.+||+|+||||+.++|||||||||||||+|++++|+|||||||||+||+||||||||||+|+||+.
T Consensus       109 tn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~~~  188 (475)
T d2gi3a1         109 ANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRY  188 (475)
T ss_dssp             ECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCT
T ss_pred             cchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceEeecCCCccchhhhHHhCceeecCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCC----------------CCCCceEEEecchhhccCCCchHHHHH
Q 044294          161 GVIPMAQSFDTVGWFAWDPKILNRVGRVLLQLADDVN----------------LVRPSQVIFAEDCLQLSSIPSDRVTQG  224 (431)
Q Consensus       161 G~~p~~~s~d~~Gp~arsv~d~~~~~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~  224 (431)
                      |++|+++++|++||||||++|++.+++++.+.+ ..+                ..++.++++..+.+.  ...++++.+.
T Consensus       189 g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d-~~d~~s~~~~~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~v~~a  265 (475)
T d2gi3a1         189 GLVAFASSLDQIGPITKTVRDAAILMEIISGRD-ENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYE--HDIEEGVSER  265 (475)
T ss_dssp             TBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCB-TTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGGG--SCCCHHHHHH
T ss_pred             CCCCCCCCCCccCCccCCHHHHHHHhhhhhccc-cccccccccccccchhccccccccceeeeecccc--CCCCHHHHHH
Confidence            999999999999999999999999999976532 211                123457777665442  3356788899


Q ss_pred             HHHHHHHHh--CCcceeeeeccccccccccchHHHhhhcccccccccchHHHHHHHHHHHHHHHHHhh------------
Q 044294          225 LVKSVEKLF--GGHIIENVILGDYVKDKVPSLQHFLSEGNKEQEYSIPSLAALSSAMRLLQRYEFKNN------------  290 (431)
Q Consensus       225 ~~~a~~~l~--g~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~------------  290 (431)
                      ++++++.|.  |++++ ++++        |.+......                  +..+...++...            
T Consensus       266 ~~~a~~~L~~~G~~V~-ev~~--------p~~~~~~~~------------------~~~i~~~e~~~~l~~~~~~~~~~~  318 (475)
T d2gi3a1         266 FEEALKLLERLGAKVE-RVKI--------PHIKYSVAT------------------YYVIAPAEASSNLARFDGVKYGLR  318 (475)
T ss_dssp             HHHHHHHHHHTTCEEE-EECC--------TTGGGHHHH------------------HHHHHHHHHHTC------------
T ss_pred             HHHHHHHHHHCCCEEE-EeCC--------CchHHHHHH------------------HHHHHHHHHHHHHHHhhcchhhhh
Confidence            999888886  77663 2222        222211100                  001111111110            


Q ss_pred             ------hhhhhhhhCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCC
Q 044294          291 ------HGDWVTTVKPDLGPGISERVWEAVRTS-----AQKIDVCQSVKTELRAALSALLGDHGILVIPTVPGPPPKLQM  359 (431)
Q Consensus       291 ------~~~~~~~~~~~~~~~~~~~l~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~  359 (431)
                            .+.+.......+.+.++.++..+....     ..++.++.+.|..+++.+.++|+++|+||+||++.+||++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~  398 (475)
T d2gi3a1         319 IKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGE  398 (475)
T ss_dssp             ------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTT
T ss_pred             cccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccc
Confidence                  111222233345677777766554332     334456778888889999999999999999999999999987


Q ss_pred             CcchHHHHHHhhhhhhcccccCCCceeeeeCcCCCCCceEEEEecCCCChHHHHHHHHHHHHHHH
Q 044294          360 DPSALEVFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVAISLLAKHGSDGFLLNLVETLHNTLK  424 (431)
Q Consensus       360 ~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~D~~LL~~A~~lE~~~~  424 (431)
                      .......+  .+..||.++|++|+|+||||+|+++|||+||||||++|+|.+||++|++||+..+
T Consensus       399 ~~~~~~~~--~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~~~  461 (475)
T d2gi3a1         399 IKDPLTYY--LMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSP  461 (475)
T ss_dssp             CCCHHHHH--TTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchHHHh--hhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            54333222  2345789999999999999999999999999999999999999999999999875
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure