Psyllid ID: psy10138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MKRGFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkrgfattstsnststflpkyekdyTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQlrretpgsfahkaqgrgselfhakmepccfRFRLSIAAAKIETVASRFASLQNqlrretpgsfahkQIQDTIVREYhenktdrkfEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK
Flexible Loop (DISEMBL)
mkrgfattstsnststflpkyekdyttivdleqrrryKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNqlrretpgsfahkqiqdtivreyhenktdrkfedCRRRFEYLhnklshikklvfiydsnnlk
Low Complexity Region (SEG)
MKRGFAttstsnststFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK
Disordered region (IsUnstruct)
*****************LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFA************************LFHAKMEPCCFRFRLSIAAAKIETVASRFASLQ**********FAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD*****
Disordered Region (DISOPRED)
*****************LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQ*********************LFHAKMEPCCFRFRLSIAAAKIETVASRFA**********************IVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD*****
Disordered Region (DISEMBL)
**************STFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK
Disordered Region (DISPRO)
***************TFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA*******SELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRGFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q3UKU1	639	RNA polymerase II elongat	yes	N/A	0.677	0.194	0.320	2e-12
O00472	640	RNA polymerase II elongat	yes	N/A	0.644	0.184	0.309	8e-12
Q9HB65	397	RNA polymerase II elongat	no	N/A	0.601	0.277	0.266	9e-09
O08856	602	RNA polymerase II elongat	no	N/A	0.349	0.106	0.453	6e-08
P55199	621	RNA polymerase II elongat	no	N/A	0.311	0.091	0.482	2e-07
Q5XFX8	387	RNA polymerase II elongat	no	N/A	0.426	0.201	0.367	4e-07
Q80VR2	395	RNA polymerase II elongat	no	N/A	0.426	0.197	0.354	2e-06
F1MGG3	395	RNA polymerase II elongat	no	N/A	0.606	0.281	0.256	3e-06
Q0IHQ3	568	MARVEL domain-containing	no	N/A	0.595	0.191	0.229	4e-06

>sp|Q3UKU1|ELL2_MOUSE RNA polymerase II elongation factor ELL2 OS=Mus musculus GN=Ell2 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 54/178 (30%)

Query: 1   MKRGFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVAS 60
           +K G  T S   S++  LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA 
Sbjct: 508 VKEG-CTASMEPSSALELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVAR 566

Query: 61  RFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQ 120
           RF  L  Q +R +PGS  ++         H                   E V   +    
Sbjct: 567 RFIKLDAQRKRLSPGSKEYQN-------VH-------------------EEVLQEY---- 596

Query: 121 NQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
            ++++ +P               YHE K          R EYLHNKL+HIK+L+  +D
Sbjct: 597 QKIKQSSPN--------------YHEEKY---------RCEYLHNKLAHIKRLIGEFD 631

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.
Mus musculus (taxid: 10090)

>sp|O00472|ELL2_HUMAN RNA polymerase II elongation factor ELL2 OS=Homo sapiens GN=ELL2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 53/171 (30%)

Query: 8   TSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQN 67
           T++   ++  LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  
Sbjct: 515 TASMEPSAIELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDA 574

Query: 68  QLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRET 127
           Q +R +PGS  ++         H                   E V   +     ++++ +
Sbjct: 575 QRKRLSPGSKEYQN-------VH-------------------EEVLQEY----QKIKQSS 604

Query: 128 PGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
           P               YHE K          R EYLHNKL+HIK+L+  +D
Sbjct: 605 PN--------------YHEEKY---------RCEYLHNKLAHIKRLIGEFD 632

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Homo sapiens (taxid: 9606)

>sp|Q9HB65|ELL3_HUMAN RNA polymerase II elongation factor ELL3 OS=Homo sapiens GN=ELL3 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 55/165 (33%)

Query: 18  LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
           +P Y   Y  I   EQ+  Y+ DF   Y EY++LHA++ T + RF  L  +++R      
Sbjct: 284 IPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKR------ 337

Query: 78  AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
                                                        +RR TP    +K ++
Sbjct: 338 ---------------------------------------------VRRGTP---EYKVLE 349

Query: 138 DTIVREYHE-NKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
           D I++EY +  K    + + +RR EYLH KLSHIK L+  ++  N
Sbjct: 350 DKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKN 394

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Homo sapiens (taxid: 9606)

>sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus musculus GN=Ell PE=2 SV=2

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%)

Query: 13  STSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRE 72
           ++S+  P Y   Y  I   EQR+ YKNDF+  Y EY+ LHA+IE +  RF  L  QLR+ 
Sbjct: 482 TSSSETPDYLLKYPAISSSEQRQSYKNDFNAEYSEYRSLHARIEQITRRFTQLDAQLRQL 541

Query: 73  TPGS 76
           + GS
Sbjct: 542 SQGS 545

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Mus musculus (taxid: 10090)

>sp|P55199|ELL_HUMAN RNA polymerase II elongation factor ELL OS=Homo sapiens GN=ELL PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query: 19  PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
           P Y   Y  I   EQR+ YKNDF+  Y EY+ LHA+IE +  RF  L  QLR+ + GS
Sbjct: 507 PDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGS 564

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Homo sapiens (taxid: 9606)

>sp|Q5XFX8|ELL3_RAT RNA polymerase II elongation factor ELL3 OS=Rattus norvegicus GN=Ell3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
           I  A++   + RF  L  +++R   G+  HK ++D IV+EY +  K    + + +RR EY
Sbjct: 306 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYSEEKRRCEY 365

Query: 163 LHNKLSHIKKLVFIYDSNN 181
           LH KLSHIK L+  ++  N
Sbjct: 366 LHEKLSHIKGLILEFEEKN 384

Enhancer-binding elongation factor that specifically binds enhancers in embryonic stem cells (ES cells), marks them, and is required for their future activation during stem cell specification. Elongation factors can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA. Does not only bind to enhancer regions of active genes, but also marks the enhancers that are in a poised or inactive state in ES cells and is required for establishing proper RNA polymerase II occupancy at developmentally regulated genes in a cohesin-dependent manner. Probably required for priming developmentally regulated genes for later recruitment of the super elongation complex (SEC), for transcriptional activation during differentiation. Required for recruitment of P-TEFb within SEC during differentiation. Probably preloaded on germ cell chromatin, suggesting that it may prime gene activation by marking enhancers as early as in the germ cells. Promoting epithelial-mesenchymal transition (EMT).

Rattus norvegicus (taxid: 10116)

>sp|Q80VR2|ELL3_MOUSE RNA polymerase II elongation factor ELL3 OS=Mus musculus GN=Ell3 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 104 IAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEY 162
           I  A++   + RF  L  +++R   G+  HK ++D IV+EY +  K    + + + R EY
Sbjct: 314 ILHARVGAASQRFTELGAEIKRLQRGTPEHKVLEDKIVQEYKKFRKRYPSYREEKHRCEY 373

Query: 163 LHNKLSHIKKLVFIYDSNN 181
           LH KLSHIK L+  ++  N
Sbjct: 374 LHQKLSHIKGLILEFEEKN 392

Elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA.

Mus musculus (taxid: 10090)

>sp|F1MGG3|ELL3_BOVIN RNA polymerase II elongation factor ELL3 OS=Bos taurus GN=ELL3 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 60/164 (36%), Gaps = 53/164 (32%)

Query: 18  LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
           +P Y   Y  I   EQ+  Y+ DF   Y EY++LHA++   + RF  L  ++     G+ 
Sbjct: 282 VPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVAAASQRFIELAAEMNNVQRGTP 341

Query: 78  AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
            HKA                              +  +      + R+  PG        
Sbjct: 342 EHKA------------------------------LEEKIVQEYKKFRKRYPG-------- 363

Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
                 Y E K         RR EYLH KLSHIK L+  ++  N
Sbjct: 364 ------YREEK---------RRCEYLHQKLSHIKGLILEFEEKN 392

Enhancer-binding elongation factor that specifically binds enhancers in embryonic stem cells (ES cells), marks them, and is required for their future activation during stem cell specification. Elongation factors can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA. Does not only bind to enhancer regions of active genes, but also marks the enhancers that are in a poised or inactive state in ES cells and is required for establishing proper RNA polymerase II occupancy at developmentally regulated genes in a cohesin-dependent manner. Probably required for priming developmentally regulated genes for later recruitment of the super elongation complex (SEC), for transcriptional activation during differentiation. Required for recruitment of P-TEFb within SEC during differentiation. Probably preloaded on germ cell chromatin, suggesting that it may prime gene activation by marking enhancers as early as in the germ cells. Promoting epithelial-mesenchymal transition (EMT).

Bos taurus (taxid: 9913)

>sp|Q0IHQ3|MALD2_XENTR MARVEL domain-containing protein 2 OS=Xenopus tropicalis GN=marveld2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 52/161 (32%)

Query: 18  LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSF 77
           +P Y   Y  I   ++R RYK  F++ + EY+ LHA+++ V  +F+ L            
Sbjct: 450 MPDYVAKYQAIKAEDERERYKAVFNDQFAEYKELHAEVQAVMKKFSELD----------- 498

Query: 78  AHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQ 137
                                                   ++  +L R       +++I 
Sbjct: 499 ----------------------------------------AVMQKLPRNPENQHEYERIA 518

Query: 138 DTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
             +++EY + K +  F + + R EYL NKLSHIK+ +  YD
Sbjct: 519 -KVLQEYQKKKNEPTFLEKKERCEYLKNKLSHIKQRIQEYD 558

May play a role in the formation of the epithelial barrier.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
189242036	597	PREDICTED: similar to AGAP004795-PA [Tri	0.644	0.197	0.335	4e-16
270015918	632	hypothetical protein TcasGA2_TC002072 [T	0.644	0.186	0.335	4e-16
427784071	525	Putative rna polymerase ii elongation fa	0.650	0.226	0.327	8e-15
47215192	672	unnamed protein product [Tetraodon nigro	0.693	0.188	0.302	2e-14
383855598	754	PREDICTED: RNA polymerase II elongation	0.622	0.151	0.327	7e-14
340714745	746	PREDICTED: RNA polymerase II elongation	0.595	0.146	0.329	8e-14
328784149	752	PREDICTED: RNA polymerase II elongation	0.628	0.152	0.317	4e-13
380020092	751	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.628	0.153	0.317	5e-13
321470782	140	hypothetical protein DAPPUDRAFT_317377 [	0.655	0.857	0.312	7e-13
410921254	625	PREDICTED: RNA polymerase II elongation	0.644	0.188	0.300	7e-13

>gi|189242036|ref|XP_967115.2| PREDICTED: similar to AGAP004795-PA [Tribolium castaneum]

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 55/173 (31%)

Query: 6   ATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65
              +  +S+S F P Y  +YTTI D +QRRR+K DF+  Y EY+ LH  +E V+ RF  L
Sbjct: 472 GAVAKVDSSSEF-PDYLTEYTTIKDADQRRRFKADFNADYAEYKDLHGIVEKVSRRFVDL 530

Query: 66  QNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRR 125
           + +L++E                                     +  + RF  L+ Q   
Sbjct: 531 ELKLKQE-------------------------------------DASSPRFKDLKKQ--- 550

Query: 126 ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
                         IVREY+ENK D + +  +RRF+YLH+KLSHIK+LV  YD
Sbjct: 551 --------------IVREYNENKNDLEHQKLKRRFQYLHDKLSHIKRLVLEYD 589

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015918|gb|EFA12366.1| hypothetical protein TcasGA2_TC002072 [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 55/173 (31%)

Query: 6   ATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65
              +  +S+S F P Y  +YTTI D +QRRR+K DF+  Y EY+ LH  +E V+ RF  L
Sbjct: 507 GAVAKVDSSSEF-PDYLTEYTTIKDADQRRRFKADFNADYAEYKDLHGIVEKVSRRFVDL 565

Query: 66  QNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRR 125
           + +L++E                                     +  + RF  L+ Q   
Sbjct: 566 ELKLKQE-------------------------------------DASSPRFKDLKKQ--- 585

Query: 126 ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
                         IVREY+ENK D + +  +RRF+YLH+KLSHIK+LV  YD
Sbjct: 586 --------------IVREYNENKNDLEHQKLKRRFQYLHDKLSHIKRLVLEYD 624

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784071|gb|JAA57487.1| Putative rna polymerase ii elongation factor ell [Rhipicephalus pulchellus]

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 55/174 (31%)

Query: 6   ATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65
           AT S  NST+  +P+Y   YT I   EQR RYK DF+  Y+EY+ LH+ IE+V+ RF  L
Sbjct: 399 ATPSPRNSTNQ-VPEYVTKYTEITSEEQRGRYKADFNAEYEEYKALHSTIESVSKRFTDL 457

Query: 66  QNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRR 125
           ++ LR    GS                                      ++  ++ Q+ R
Sbjct: 458 EDCLRTAREGS-------------------------------------EQWNRVKQQIVR 480

Query: 126 ETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDS 179
           E                 Y E+K D++++  RR+F+YLH+KL+HIK+LV  YDS
Sbjct: 481 E-----------------YEESKRDQRYQQARRKFQYLHDKLAHIKRLVMDYDS 517

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47215192|emb|CAG01399.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 48/175 (27%)

Query: 5   FATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFAS 64
           F+T ST        P Y   Y  +V  +QR+ YK+DF+  Y EY++LHA++E+V  RF+ 
Sbjct: 538 FSTNST--------PDYVVKYLPLVSGDQRQSYKDDFNAEYDEYRLLHARVESVTRRFSQ 589

Query: 65  LQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLR 124
           L  Q R+  PG+  H+   R           C F                          
Sbjct: 590 LDAQCRKLVPGTKEHQVADR-----------CSF-------------------------- 612

Query: 125 RETPGSFAHKQIQDTIVREYHENKTDRK-FEDCRRRFEYLHNKLSHIKKLVFIYD 178
             +P +F   ++Q+ +++EY + K D   +   ++R EYLHNKL+HIK+L+  +D
Sbjct: 613 --SPSAFTSLKMQEEVLKEYKKMKQDSPNYHVEKQRCEYLHNKLAHIKRLIADFD 665

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383855598|ref|XP_003703297.1| PREDICTED: RNA polymerase II elongation factor ELL-like [Megachile rotundata]

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 54/168 (32%)

Query: 15  STFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETP 74
           S+  P Y   YTTI   EQRRRYK +F+  Y+EY+ LH ++  V+ RFA LQ +L++E  
Sbjct: 612 SSEYPDYLTYYTTISSAEQRRRYKAEFNADYEEYRRLHTQVAKVSKRFAQLQERLKQE-- 669

Query: 75  GSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSF-AH 133
                                                              ET G++  +
Sbjct: 670 ---------------------------------------------------ETSGNWDEY 678

Query: 134 KQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
           ++I+  I+ EY+E K D   ++ +RRF YLH KLSHIK+LV  YD+ N
Sbjct: 679 EEIRRQILHEYNETKRDPVHKETKRRFHYLHEKLSHIKRLVLEYDTQN 726

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714745|ref|XP_003395885.1| PREDICTED: RNA polymerase II elongation factor ELL2-like [Bombus terrestris]

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 52/161 (32%)

Query: 19  PKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFA 78
           P Y   YTTI  +EQRRRYK +F+  Y+EYQ LH ++  V+ RF  LQ++L++E      
Sbjct: 611 PDYLTYYTTISSMEQRRRYKEEFNADYEEYQRLHTQVAKVSIRFTELQDRLKQE------ 664

Query: 79  HKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQD 138
            +A G   E                                             +++I+ 
Sbjct: 665 -EALGNWDE---------------------------------------------YQEIKQ 678

Query: 139 TIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDS 179
            I  EY+E K D K ++ + RF YLH KLSHIK+LV  YD+
Sbjct: 679 QIFDEYNETKNDPKHKETKHRFHYLHEKLSHIKRLVLEYDA 719

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784149|ref|XP_393419.3| PREDICTED: RNA polymerase II elongation factor ELL-like [Apis mellifera]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 52/167 (31%)

Query: 15  STFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETP 74
           S+  P Y   YTTI   EQRRRYK +F+  Y+EY+ LHA++  V+ RF  LQ +L++E  
Sbjct: 613 SSEYPDYLTYYTTISSSEQRRRYKAEFNADYEEYRRLHAQVANVSKRFTQLQERLKQE-- 670

Query: 75  GSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHK 134
                +A G   E                                             ++
Sbjct: 671 -----EASGNWEE---------------------------------------------YE 680

Query: 135 QIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
           +++  I+ +Y+E K D   ++ +RRF YLH KLSHIK+LV  YD+ N
Sbjct: 681 EVRRQILHDYNETKRDPVHKEIKRRFHYLHEKLSHIKRLVLEYDTQN 727

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020092|ref|XP_003693930.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II elongation factor ELL2-like [Apis florea]

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 52/167 (31%)

Query: 15  STFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETP 74
           S+  P Y   YTTI   EQRRRYK +F+  Y+EY+ LHA++  V+ RF  LQ +L++E  
Sbjct: 612 SSEYPDYLTYYTTISSSEQRRRYKAEFNADYEEYRRLHAQVANVSKRFTQLQERLKQE-- 669

Query: 75  GSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHK 134
                +A G   E                                             ++
Sbjct: 670 -----EASGNWEE---------------------------------------------YE 679

Query: 135 QIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNN 181
           +++  I+ +Y+E K D   ++ +RRF YLH KLSHIK+LV  YD+ N
Sbjct: 680 EVRRQILHDYNETKRDPVHKEXKRRFHYLHEKLSHIKRLVLEYDTQN 726

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470782|gb|EFX81757.1| hypothetical protein DAPPUDRAFT_317377 [Daphnia pulex]

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 56/176 (31%)

Query: 4   GFATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFA 63
           G + ++T   T +    Y   Y TIV  EQR RYK DF+  Y EY+ L            
Sbjct: 15  GLSASTTPTETDS--EPYTLQYRTIVSGEQRSRYKEDFNSQYNEYRNL------------ 60

Query: 64  SLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQL 123
                          HKA                           I+ V+ RF+ L+ +L
Sbjct: 61  ---------------HKA---------------------------IDKVSKRFSHLEEEL 78

Query: 124 RRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDS 179
           R++  G+ A ++I+  IVREY EN  D K+ + +RRF +LH KL+HIK+LV  +D+
Sbjct: 79  RQQDEGTSAWQRIKSQIVREYKENLRDAKYREAKRRFHHLHEKLAHIKRLVLEWDT 134

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410921254|ref|XP_003974098.1| PREDICTED: RNA polymerase II elongation factor ELL-like [Takifugu rubripes]

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 55/173 (31%)

Query: 12  NSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRR 71
           +S+S  + +Y   YT I   EQR+RYKNDF+  Y EY+ LHA+IE +   F  L N+L+ 
Sbjct: 506 SSSSPVVAEYLLKYTVISSPEQRQRYKNDFNAEYSEYRGLHARIECITRHFTVLDNELK- 564

Query: 72  ETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSF 131
                                               +++    ++ ++ NQ         
Sbjct: 565 ------------------------------------QLQQGTDKYKTVNNQ--------- 579

Query: 132 AHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHNKLSHIKKLVFIYDSNNLK 183
                   I++EYH+ K T+  +   + R EYLHNKLSHIKKL+  YD   L+
Sbjct: 580 --------IIKEYHKIKETNPNYSQDKNRCEYLHNKLSHIKKLIATYDQQQLQ 624

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
UNIPROTKB|Q5ZLS5	610	ELL "Uncharacterized protein"	0.393	0.118	0.438	1.6e-11
RGD|1311121	604	Ell "elongation factor RNA pol	0.420	0.127	0.397	1.1e-10
MGI|MGI:109377	602	Ell "elongation factor RNA pol	0.420	0.127	0.397	1.4e-10
UNIPROTKB|B4DNK7	390	ELL2 "cDNA FLJ60736, highly si	0.322	0.151	0.525	1.5e-10
RGD|1309296	87	Ell2 "elongation factor RNA po	0.393	0.827	0.397	2e-10
UNIPROTKB|P55199	621	ELL "RNA polymerase II elongat	0.420	0.123	0.384	2.5e-10
UNIPROTKB|E1BIK3	575	ELL2 "Uncharacterized protein"	0.322	0.102	0.525	3e-10
MGI|MGI:2183438	639	Ell2 "elongation factor RNA po	0.322	0.092	0.525	3.6e-10
UNIPROTKB|O00472	640	ELL2 "RNA polymerase II elonga	0.322	0.092	0.525	3.6e-10
UNIPROTKB|F1RNV6	640	ELL2 "Uncharacterized protein"	0.322	0.092	0.525	3.6e-10

UNIPROTKB|Q5ZLS5 ELL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query:   107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
             A+IE +  RF  L ++L++   GS  +K I D I++EY +  KT+  +   + R EYLHN
Sbjct:   534 ARIERITRRFTQLDSKLKQLLQGSEEYKTIHDQILQEYRKIKKTNPNYSQEKNRCEYLHN 593

Query:   166 KLSHIKKLVFIYD 178
             KL+HIKKL+  YD
Sbjct:   594 KLAHIKKLIAEYD 606

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

RGD|1311121 Ell "elongation factor RNA polymerase II" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query:   107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
             A+IE +  RF  L  QLR+ + GS  ++  +  I++EY +  KT+  +   +RR EYLH 
Sbjct:   524 ARIEQITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSREKRRCEYLHR 583

Query:   166 KLSHIKKLVFIYDSNNLK 183
             KL+HIK+L+  YD   L+
Sbjct:   584 KLAHIKRLIAEYDQRQLQ 601

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

MGI|MGI:109377 Ell "elongation factor RNA polymerase II" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query:   107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
             A+IE +  RF  L  QLR+ + GS  ++  +  I++EY +  KT+  +   +RR EYLH 
Sbjct:   522 ARIEQITRRFTQLDAQLRQLSQGSDEYETTRGQILQEYRKIKKTNTNYSCEKRRCEYLHR 581

Query:   166 KLSHIKKLVFIYDSNNLK 183
             KL+HIK+L+  YD   L+
Sbjct:   582 KLAHIKRLIAEYDQRQLQ 599

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

UNIPROTKB|B4DNK7 ELL2 "cDNA FLJ60736, highly similar to RNA polymerase II elongation factor ELL2" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
             LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  Q +R +PGS
Sbjct:   275 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 333

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

RGD|1309296 Ell2 "elongation factor RNA polymerase II 2" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/73 (39%), Positives = 49/73 (67%)

Query:   107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENK-TDRKFEDCRRRFEYLHN 165
             A++ETVA RF  L  Q +R +PGS  ++ + + +++EY + K +   + + + R EYLHN
Sbjct:     7 ARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHN 66

Query:   166 KLSHIKKLVFIYD 178
             KL+HIK+L+  +D
Sbjct:    67 KLAHIKRLIGEFD 79

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|P55199 ELL "RNA polymerase II elongation factor ELL" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query:   107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE-NKTDRKFEDCRRRFEYLHN 165
             A+IE +  RF  L  QLR+ + GS  ++  +  I++EY +  KT+  +   + R EYLH+
Sbjct:   541 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 600

Query:   166 KLSHIKKLVFIYDSNNLK 183
             KL+HIK+L+  YD   L+
Sbjct:   601 KLAHIKRLIAEYDQRQLQ 618

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0032786 "positive regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BIK3 ELL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
             LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  Q +R +PGS
Sbjct:   460 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 518

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2183438 Ell2 "elongation factor RNA polymerase II 2" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
             LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  Q +R +PGS
Sbjct:   524 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 582

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

UNIPROTKB|O00472 ELL2 "RNA polymerase II elongation factor ELL2" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
             LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  Q +R +PGS
Sbjct:   525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 583

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RNV6 ELL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    18 LPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGS 76
             LP Y   Y  IV  EQR+ YK+DF+  Y EY+ LHA++ETVA RF  L  Q +R +PGS
Sbjct:   525 LPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGS 583

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
pfam07303	101	pfam07303, Occludin_ELL, Occludin homology domain	2e-14

>gnl|CDD|115928 pfam07303, Occludin_ELL, Occludin homology domain

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 54/154 (35%)

Query: 25  YTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGR 84
           Y  I   EQR+RYK +F   Y+EY+ L A+++ +  R   L  +L     GS  +K    
Sbjct: 1   YPPITSDEQRQRYKAEFDSDYQEYKELQAEVDAINKRLQQLDAELDSLPEGSQEYKTVAA 60

Query: 85  GSELFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREY 144
             + +                               N+L++ +P               Y
Sbjct: 61  QLDEY-------------------------------NRLKKRSPD--------------Y 75

Query: 145 HENKTDRKFEDCRRRFEYLHNKLSHIKKLVFIYD 178
            E K          R +YL NKLSHIK++V  YD
Sbjct: 76  QEKK---------ERCKYLKNKLSHIKRMVSDYD 100

This domain represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions, while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA. This shared domain is thought to mediate protein interactions. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF07303	101	Occludin_ELL: Occludin homology domain; InterPro:	100.0
KOG4796|consensus	604		100.0

>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL

Probab=100.00  E-value=3.2e-40  Score=249.59  Aligned_cols=100  Identities=46%  Similarity=0.839  Sum_probs=89.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhH
Q psy10138         25 YTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSI  104 (183)
Q Consensus        25 Yp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~  104 (183)
                      ||||+|.+||++||++|+++|+||++||++|++|+++|++|+++|++                                 
T Consensus         1 Yp~I~s~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~---------------------------------   47 (101)
T PF07303_consen    1 YPPITSSEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKR---------------------------------   47 (101)
T ss_dssp             S----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence            89999999999999999999999999999999999999999999999                                 


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHhhHHHHHHHHhhhhc
Q psy10138        105 AAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHEN-KTDRKFEDCRRRFEYLHNKLSHIKKLVFIYDS  179 (183)
Q Consensus       105 ~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kk-k~dp~f~~kk~Rc~YL~~KLsHIK~lI~~yD~  179 (183)
                                           +++||.+|+.|+ +|++||+++ ++||+|+++|.||+|||+||+|||++|.+||+
T Consensus        48 ---------------------l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I~~yD~  101 (101)
T PF07303_consen   48 ---------------------LPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLIQDYDQ  101 (101)
T ss_dssp             ---------------------S-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                                 446899999999 999999997 79999999999999999999999999999995

Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.

>KOG4796|consensus

Probab=100.00  E-value=4.3e-39  Score=300.50  Aligned_cols=121  Identities=43%  Similarity=0.712  Sum_probs=115.3

Q ss_pred             CCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccc
Q psy10138          9 STSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSEL   88 (183)
Q Consensus         9 ~~~~~~~~~~pDY~~kYp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l   88 (183)
                      +++.|+++++|||+++|++|.|+|||++||+||+++|.||++||++|+.|.+||.+|+++|++.                
T Consensus       478 ~~~~Pss~~tPdYllqY~aI~S~eqr~~Yk~dF~~eY~EYreLharve~vs~rF~~Lea~L~sr----------------  541 (604)
T KOG4796|consen  478 SSSSPSSSPTPDYLLQYGAISSLEQRQRYKKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSR----------------  541 (604)
T ss_pred             cccCCCCCCCcchhhhccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence            4467889999999999999999999999999999999999999999999999999999999951                


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhHH
Q psy10138         89 FHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNKLS  168 (183)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~kkk~dp~f~~kk~Rc~YL~~KLs  168 (183)
                                                           +.+||++|++|+++|++||+++++||+|.++|+||+|||+||+
T Consensus       542 -------------------------------------ls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLa  584 (604)
T KOG4796|consen  542 -------------------------------------LSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLA  584 (604)
T ss_pred             -------------------------------------cCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHH
Confidence                                                 5689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcccC
Q psy10138        169 HIKKLVFIYDSNNL  182 (183)
Q Consensus       169 HIK~lI~~yD~~~~  182 (183)
                      |||.||.+||+++.
T Consensus       585 HIK~lI~efDk~~~  598 (604)
T KOG4796|consen  585 HIKTLIGEFDKQQR  598 (604)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	2e-15
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	4e-14

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A Length = 140

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 6  ATTSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASL 65
            T+   S       + ++Y  I   +QR+ YK +F    +EY+ L + ++ +    + L
Sbjct: 19 DYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRL 78

Query: 66 QNQLRRETPGSFAHKA 81
            +L      S  + A
Sbjct: 79 DKELDDYREESEEYMA 94

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A Length = 140

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 107 AKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHENKTDRKFEDCRRRFEYLHNK 166
           + ++ +    + L  +L      S  +    D       + K    ++  +   + L +K
Sbjct: 66  SVLDEINKELSRLDKELDDYREESEEYMAAAD-EYNRLKQVKGSADYKSKKNHCKQLKSK 124

Query: 167 LSHIKKLVFIYDSN 180
           LSHIKK+V  YD  
Sbjct: 125 LSHIKKMVGDYDRQ 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	100.0
3lay_A	175	Zinc resistance-associated protein; salmonella typ	82.64

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A

Probab=100.00  E-value=6e-43  Score=279.00  Aligned_cols=116  Identities=25%  Similarity=0.408  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCcc
Q psy10138          8 TSTSNSTSTFLPKYEKDYTTIVDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSE   87 (183)
Q Consensus         8 ~~~~~~~~~~~pDY~~kYp~I~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~   87 (183)
                      +++-.|.+.++|||+++||||+|++||++||++|+++|.||++||++|++|+++|++|+++|+++               
T Consensus        21 ~t~~~~~~~~~pDy~~~Yp~I~S~eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l---------------   85 (140)
T 1xaw_A           21 TTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDY---------------   85 (140)
T ss_dssp             -------------CTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------------
T ss_pred             ccCCCCCCCCCCcHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence            34455669999999999999999999999999999999999999999999999999999999994               


Q ss_pred             ccccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHH
Q psy10138         88 LFHAKMEPCCFRFRLSIAAAKIETVASRFASLQNQLRRETPGSFAHKQIQDTIVREYHE---NKTDRKFEDCRRRFEYLH  164 (183)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ql~r~~~gS~e~~~i~~~I~rEY~k---kk~dp~f~~kk~Rc~YL~  164 (183)
                                                             ++||.+|+.|    ++||++   +|+||+|+++|+||+|||
T Consensus        86 ---------------------------------------~~~s~e~~~i----~~EY~r~k~~K~dp~y~ekK~Rc~yL~  122 (140)
T 1xaw_A           86 ---------------------------------------REESEEYMAA----ADEYNRLKQVKGSADYKSKKNHCKQLK  122 (140)
T ss_dssp             ---------------------------------------CTTSHHHHHH----HHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CCCCHHHHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                                                   4578999875    899999   588999999999999999


Q ss_pred             hhHHHHHHHHhhhhccc
Q psy10138        165 NKLSHIKKLVFIYDSNN  181 (183)
Q Consensus       165 ~KLsHIK~lI~~yD~~~  181 (183)
                      +||+|||++|.+||+++
T Consensus       123 ~KLsHIK~lI~~YD~~~  139 (140)
T 1xaw_A          123 SKLSHIKKMVGDYDRQK  139 (140)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhccC
Confidence            99999999999999864

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=82.64  E-value=14  Score=29.75  Aligned_cols=63  Identities=22%  Similarity=0.344  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccCCCccccccccccchhhhhhhHHHHH
Q psy10138         29 VDLEQRRRYKNDFSESYKEYQMLHAKIETVASRFASLQNQLRRETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAK  108 (183)
Q Consensus        29 ~s~eqR~rYK~~F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~  108 (183)
                      -++||+..+++-+++-+.+-..|..++.+   +-.+|.+++..-.|               +               .+|
T Consensus        68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~a---kr~EL~aL~~a~~~---------------D---------------eak  114 (175)
T 3lay_A           68 LTTEQQATAQKIYDDYYTQTSALRQQLIS---KRYEYNALLTASSP---------------D---------------TAK  114 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTSSSC---------------C---------------HHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCC---------------C---------------HHH
Confidence            57899999999999999998888766554   44667776665221               1               367


Q ss_pred             HHHHHHHHHhhhhhhc
Q psy10138        109 IETVASRFASLQNQLR  124 (183)
Q Consensus       109 ~~~~~~~~a~~~~ql~  124 (183)
                      |+.++.-++.++.++.
T Consensus       115 I~aL~~Ei~~Lr~qL~  130 (175)
T 3lay_A          115 INAVAKEMESLGQKLD  130 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	85.39

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.39  E-value=3  Score=28.40  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcCCCCccccccCCCccccccccccchhhhhhhHHHHHHH
Q psy10138         41 FSESYKEYQMLHAKIETVASRFASLQNQLR----------RETPGSFAHKAQGRGSELFHAKMEPCCFRFRLSIAAAKIE  110 (183)
Q Consensus        41 F~~~Y~EY~~Lha~v~~v~~rf~~L~~~L~----------~lp~g~~~~~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~  110 (183)
                      +++...+|..|++++..+..+.++|++++.          .+|++...+|.=|       +++++.--.-....-..++|
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG-------~vLv~~~~~e~~~~l~~~~e   75 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSG-------NILIRVAKDELTEELQEKLE   75 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEET-------TEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhc-------chhhcCcHHHHHHHHHHHHH
Confidence            456778899999999999999999998554          4555544444222       22222222223333455666


Q ss_pred             HHHHHHHhhhhhh
Q psy10138        111 TVASRFASLQNQL  123 (183)
Q Consensus       111 ~~~~~~a~~~~ql  123 (183)
                      +....+..+..|+
T Consensus        76 ~l~~~i~~l~~q~   88 (107)
T d1fxka_          76 TLQLREKTIERQE   88 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666555