Psyllid ID: psy10446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MCLISPKDQDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRYI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccEEEEEcccccEEHHHHHHHHHHccccccccccccEEEEEEEccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHccccccccHHccccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccEEEEEEccccEEHHHHHHHHccccccccccccccEEEEEEEccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mclispkdqdflidwkgvtfepssfsgrdwqwnvnsKEEAYLKILKMFedrrtapysiHQIALTgasegkavgewfgpNTVAQVLRKLakyddwssIVFHVALDNTLVVNQVKKLCTTNkrklakyddwsSIVFHVALDNTLVVNQVKKLcttnkryi
Flexible Loop (DISEMBL)
mclispkdqdflidwKGVTfepssfsgrdwqwnvnSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHValdntlvvnQVKKLCttnkrklakyddwSSIVFHValdntlvvnqvkklcttnkryi
Low Complexity Region (SEG)
MCLISPKDQDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRYI
Disordered region (IsUnstruct)
********QDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTT*****
Disordered Region (DISOPRED)
************************FSG**************LKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVK*****************SIVFHVALDNTLVVNQVKKLCTTNKR**
Disordered Region (DISEMBL)
MCLISPKDQDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRYI
Disordered Region (DISPRO)
*CLISPKDQDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNK**I
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCLISPKDQDFLIDWKGVTFEPSSFSGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q640G7	384	Cysteine protease ATG4B O	N/A	N/A	0.569	0.234	0.566	4e-27
Q5ZIW7	380	Cysteine protease ATG4A O	yes	N/A	0.582	0.242	0.548	3e-26
Q8BGE6	393	Cysteine protease ATG4B O	yes	N/A	0.588	0.236	0.510	5e-26
Q9Y4P1	393	Cysteine protease ATG4B O	yes	N/A	0.588	0.236	0.510	6e-26
Q6PZ05	398	Cysteine protease ATG4A O	yes	N/A	0.582	0.231	0.526	3e-25
Q6DG88	394	Cysteine protease ATG4B O	no	N/A	0.569	0.228	0.527	3e-25
Q6PZ02	393	Cysteine protease ATG4B O	no	N/A	0.588	0.236	0.5	3e-25
Q6PZ03	393	Cysteine protease ATG4B O	no	N/A	0.588	0.236	0.5	4e-25
Q8WYN0	398	Cysteine protease ATG4A O	no	N/A	0.569	0.226	0.527	7e-25
Q5R699	398	Cysteine protease ATG4A O	no	N/A	0.569	0.226	0.527	8e-25

>sp|Q640G7|ATG4B_XENLA Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW+W+    +  YL IL  F D++ + YSIHQIA  G  EGK +G+W+GPNTVAQVLR
Sbjct: 93  GRDWRWDKQKPKGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLR 152

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           KLA +D WSSI  H+A+DNT+VV+++++LC
Sbjct: 153 KLAVFDQWSSIAVHIAMDNTVVVDEIRRLC 182

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q5ZIW7|ATG4A_CHICK Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDWQW  + K+ E Y +IL  F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct: 79  GRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 138

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTT 118
           +KLA +D+W+S+  +V++DNT+V+  +KK+C +
Sbjct: 139 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRS 171

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 93  GRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC  N
Sbjct: 153 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRAN 186

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 93  GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 153 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 186

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW W    ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct: 96  GRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 155

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTT 118
           +KLA +D+W+S+  +V++DNT+V+  +KK+C T
Sbjct: 156 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRT 188

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 27  GRDWQWNVNSKEEA-YLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W+   ++   Y+ IL  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 93  GRDWKWSPGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           +KLA +D WS +  HVA+DNT+V+ ++K+LC
Sbjct: 153 KKLAVFDSWSRLAVHVAMDNTVVIEEIKRLC 183

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ02|ATG4B_CHICK Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ + Y  +L  F D++ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 92  GRDWRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 151

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC +N
Sbjct: 152 KKLATFDTWSSLAVHIAMDNTVVMEEIRRLCQSN 185

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L+ F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 93  GRDWRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WS++  HVA+DNT+V+  +++LC ++
Sbjct: 153 KKLAVFDTWSALAVHVAMDNTVVMADIRRLCRSS 186

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1

 Score =  112 bits (281), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW W    ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct: 96  GRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 155

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           +KLA +D+W+S+  +V++DNT+V+  +KK+C
Sbjct: 156 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMC 186

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW W    ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct: 96  GRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 155

Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           +KLA +D+W+S+  +V++DNT+V+  +KK+C
Sbjct: 156 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMC 186

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
328707620	402	PREDICTED: cysteine protease ATG4B-like	0.708	0.278	0.616	2e-35
328722655	252	PREDICTED: cysteine protease ATG4B-like	0.708	0.444	0.616	4e-35
242007959	388	Cysteine protease ATG4A, putative [Pedic	0.753	0.306	0.585	6e-34
383861144	384	PREDICTED: cysteine protease ATG4B-like	0.639	0.263	0.643	8e-33
209969827	405	autophagy-specific gene 4 [Nasonia vitri	0.639	0.249	0.653	1e-32
380023311	382	PREDICTED: cysteine protease ATG4B-like	0.569	0.235	0.7	2e-32
66529516	382	PREDICTED: cysteine protease ATG4B [Apis	0.569	0.235	0.688	6e-32
322795203	403	hypothetical protein SINV_08608 [Solenop	0.639	0.250	0.623	4e-31
91083193	366	PREDICTED: similar to Autophagy-specific	0.708	0.306	0.535	7e-31
350425106	383	PREDICTED: cysteine protease ATG4B-like	0.569	0.234	0.666	2e-30

>gi|328707620|ref|XP_001947296.2| PREDICTED: cysteine protease ATG4B-like isoform 1 [Acyrthosiphon pisum] gi|328707622|ref|XP_003243448.1| PREDICTED: cysteine protease ATG4B-like isoform 2 [Acyrthosiphon pisum] gi|328707624|ref|XP_003243449.1| PREDICTED: cysteine protease ATG4B-like isoform 3 [Acyrthosiphon pisum] gi|328707626|ref|XP_003243450.1| PREDICTED: cysteine protease ATG4B-like isoform 4 [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 88/112 (78%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW+W+ + ++  YLKIL+MFED+R+APYSIHQIAL G S GK VGEWFGPNT+AQVL+
Sbjct: 114 GRDWRWDPDKRDIDYLKILRMFEDKRSAPYSIHQIALMGVSHGKQVGEWFGPNTIAQVLK 173

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138
           KLA  D+ SS+VFHVALDNTLV+N+VKKLCT  ++  +    W  +V  + L
Sbjct: 174 KLATMDELSSLVFHVALDNTLVINEVKKLCTVMEQTNSSKQIWKPLVLVIPL 225

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722655|ref|XP_003247627.1| PREDICTED: cysteine protease ATG4B-like [Acyrthosiphon pisum]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 88/112 (78%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW+W+ + ++  YLKIL+MFED+R+APYSIHQIAL G S GK VGEWFGPNT+AQVL+
Sbjct: 114 GRDWRWDPDKRDIDYLKILRMFEDKRSAPYSIHQIALMGVSHGKQVGEWFGPNTIAQVLK 173

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138
           KLA  D+ SS+VFHVALDNTLV+N+VKKLCT  ++  +    W  +V  + L
Sbjct: 174 KLATMDELSSLVFHVALDNTLVINEVKKLCTVMEQTNSSKQIWKPLVLVIPL 225

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007959|ref|XP_002424782.1| Cysteine protease ATG4A, putative [Pediculus humanus corporis] gi|212508305|gb|EEB12044.1| Cysteine protease ATG4A, putative [Pediculus humanus corporis]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 88/123 (71%), Gaps = 4/123 (3%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW+W  +SKE  YL+ILKMFED +TA YSIHQIAL G SEGK VG+WFGPNTV QVL+
Sbjct: 95  GRDWRWKKDSKEPEYLRILKMFEDTKTATYSIHQIALMGVSEGKDVGQWFGPNTVTQVLK 154

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTLVVNQ 146
           KL+ YD WSSIV HVALDNT++VN +K LC  N++ +      SS   H  L+  +  N 
Sbjct: 155 KLSVYDKWSSIVIHVALDNTIIVNDIKSLCQRNEQSVID----SSAQKHSPLNEPVYFNS 210

Query: 147 VKK 149
            +K
Sbjct: 211 ARK 213

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861144|ref|XP_003706046.1| PREDICTED: cysteine protease ATG4B-like [Megachile rotundata]

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 76/101 (75%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDWQW   ++   YLKIL+ FEDRRTAP+SIHQIA  GASEGK VG+WFGPNT+AQVL+
Sbjct: 92  GRDWQWTPETRNSTYLKILERFEDRRTAPFSIHQIASMGASEGKEVGQWFGPNTIAQVLK 151

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYD 127
           KL  YDDWSSI  HVALDNTL+VN + + C       A+ D
Sbjct: 152 KLVVYDDWSSITIHVALDNTLIVNDILRQCRVEGGTTAEAD 192

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209969827|ref|NP_001123274.2| autophagy-specific gene 4 [Nasonia vitripennis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 75/101 (74%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW+W   ++   YL IL+ FEDRR APYSIHQIAL GASEGK VG+WFGPNT+AQVL+
Sbjct: 122 GRDWRWTPETRSSTYLNILRRFEDRRAAPYSIHQIALMGASEGKDVGQWFGPNTIAQVLK 181

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYD 127
           KL  YDDWSSI  HVALDNTLVVN V + C       A+ D
Sbjct: 182 KLVVYDDWSSITIHVALDNTLVVNDVVQQCRVEGATTAEVD 222

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023311|ref|XP_003695467.1| PREDICTED: cysteine protease ATG4B-like [Apis florea]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 75/90 (83%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDWQWN+ ++   YLKIL+ FED+R AP+SIHQIAL GASEGK VG+WFGPNTVAQVL+
Sbjct: 92  GRDWQWNLETRNSTYLKILERFEDKRNAPFSIHQIALMGASEGKEVGQWFGPNTVAQVLK 151

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           KL  +D+WSSI  HVALDNTL+VN + K C
Sbjct: 152 KLVVFDEWSSITIHVALDNTLIVNDILKQC 181

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529516|ref|XP_624577.1| PREDICTED: cysteine protease ATG4B [Apis mellifera]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 75/90 (83%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDWQW++ ++   YLKIL+ FED+R AP+SIHQIAL GASEGK VG+WFGPNTVAQVL+
Sbjct: 92  GRDWQWSLETRNSTYLKILERFEDKRNAPFSIHQIALMGASEGKEVGQWFGPNTVAQVLK 151

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           KL  +D+WSSI  HVALDNTL+VN + K C
Sbjct: 152 KLVVFDEWSSITIHVALDNTLIVNDILKQC 181

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795203|gb|EFZ18025.1| hypothetical protein SINV_08608 [Solenopsis invicta]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 76/101 (75%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           G+DWQW   +K   YLKIL  FED+R A +SIHQIALTGASEGK VG+WFGPNT+AQVL+
Sbjct: 92  GKDWQWMPETKNNTYLKILSRFEDKRAAAFSIHQIALTGASEGKEVGQWFGPNTIAQVLK 151

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYD 127
           KL  YD+WSS+  HVALDNTL+VN + K C     + A+ D
Sbjct: 152 KLIVYDEWSSLTIHVALDNTLIVNDILKQCRIEGGETAEAD 192

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083193|ref|XP_972923.1| PREDICTED: similar to Autophagy-specific protein, putative [Tribolium castaneum] gi|270006970|gb|EFA03418.1| hypothetical protein TcasGA2_TC013405 [Tribolium castaneum]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 79/112 (70%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDW W   +K+  YLKIL  F D+R AP+SIHQIA+ G SE K VG+WFGPNTVAQVL+
Sbjct: 93  GRDWVWEPETKDSTYLKILSKFVDKRQAPFSIHQIAMMGVSENKEVGQWFGPNTVAQVLK 152

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138
           KL KYD+WS+I  H+ALDNTL+++ +++LC +         DW  ++  V L
Sbjct: 153 KLVKYDEWSAIEMHIALDNTLIISDIRELCLSQGSDGCSSGDWKPLLLIVPL 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425106|ref|XP_003494013.1| PREDICTED: cysteine protease ATG4B-like [Bombus impatiens]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 72/90 (80%)

Query: 27  GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
           GRDWQW   ++   YLKIL+ FED+RTA +SIHQIA  GASEGK VG+WFGPNT+AQVL+
Sbjct: 92  GRDWQWTAETRNSTYLKILERFEDKRTAAFSIHQIASMGASEGKEVGQWFGPNTIAQVLK 151

Query: 87  KLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           KL  +D+WSSI  HVALDNTL+VN + K C
Sbjct: 152 KLVVFDEWSSITIHVALDNTLIVNDILKQC 181

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
UNIPROTKB|Q5ZIW7	380	ATG4A "Cysteine protease ATG4A	0.569	0.236	0.560	2.5e-26
UNIPROTKB|C9J3C0	147	ATG4B "Cysteine protease ATG4B	0.588	0.632	0.510	3.2e-26
UNIPROTKB|F5H7P2	379	ATG4B "Cysteine protease ATG4B	0.588	0.245	0.510	3.2e-26
UNIPROTKB|F8WD71	319	ATG4B "Cysteine protease ATG4B	0.588	0.291	0.510	3.2e-26
UNIPROTKB|Q9Y4P1	393	ATG4B "Cysteine protease ATG4B	0.588	0.236	0.510	3.2e-26
MGI|MGI:1913865	393	Atg4b "autophagy related 4B, c	0.588	0.236	0.510	3.2e-26
ZFIN|ZDB-GENE-050522-430	375	atg4a "ATG4 autophagy related	0.727	0.306	0.457	8.4e-26
UNIPROTKB|F1LRG2	394	Atg4b "Protein Atg4b" [Rattus	0.569	0.228	0.516	1.1e-25
FB|FBgn0031298	411	Atg4 "Autophagy-specific gene	0.569	0.218	0.566	1.4e-25
UNIPROTKB|A6QLH1	398	ATG4A "ATG4 autophagy related	0.582	0.231	0.526	1.4e-25

UNIPROTKB|Q5ZIW7 ATG4A "Cysteine protease ATG4A" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 51/91 (56%), Positives = 70/91 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDWQW  + K+ E Y +IL  F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct:    79 GRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 138

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
             +KLA +D+W+S+  +V++DNT+V+  +KK+C
Sbjct:   139 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMC 169

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|C9J3C0 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/94 (51%), Positives = 72/94 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    19 GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 78

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
             +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct:    79 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 112

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F5H7P2 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/94 (51%), Positives = 72/94 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    79 GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 138

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
             +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct:   139 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 172

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F8WD71 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/94 (51%), Positives = 72/94 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    19 GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 78

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
             +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct:    79 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 112

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9Y4P1 ATG4B "Cysteine protease ATG4B" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/94 (51%), Positives = 72/94 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    93 GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
             +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct:   153 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 186

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006508 "proteolysis" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0006914 "autophagy" evidence=IGI

GO:0000045 "autophagic vacuole assembly" evidence=IGI

GO:0010508 "positive regulation of autophagy" evidence=IDA

GO:0004175 "endopeptidase activity" evidence=IDA

MGI|MGI:1913865 Atg4b "autophagy related 4B, cysteine peptidase" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 48/94 (51%), Positives = 71/94 (75%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    93 GRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 152

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
             +KLA +D WSS+  H+A+DNT+V+ ++++LC  N
Sbjct:   153 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRAN 186

GO:0000045 "autophagic vacuole assembly" evidence=ISO

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0006508 "proteolysis" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=ISO;ISS

GO:0008152 "metabolic process" evidence=IDA;TAS

GO:0008233 "peptidase activity" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO;TAS

GO:0010508 "positive regulation of autophagy" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

ZFIN|ZDB-GENE-050522-430 atg4a "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 54/118 (45%), Positives = 79/118 (66%)

Query:    24 SFSGRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVA 82
             S  GRDW+W+    + + Y +IL  F D++ + YSIHQ+A  G  EGK+VGEW+GPNTVA
Sbjct:    90 SHLGRDWRWDPEKHQPKEYQRILDCFLDKKDSCYSIHQMAQMGVGEGKSVGEWYGPNTVA 149

Query:    83 QVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYD--DWSSIVFHVAL 138
             QVL+KLA +DDW+S+  +V++DNT+V+  +KKLC     +L      DW  ++  + L
Sbjct:   150 QVLKKLALFDDWNSLSVYVSMDNTVVIEDIKKLCVRADLQLQSQQPLDWRPLLLVIPL 207

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1LRG2 Atg4b "Protein Atg4b" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 47/91 (51%), Positives = 70/91 (76%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct:    94 GRDWRWTQRKRQPDSYFSVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 153

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
             +KLA +D WSS+  H+A+DNT+V+ ++++LC
Sbjct:   154 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLC 184

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0031298 Atg4 "Autophagy-specific gene 4" [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 51/90 (56%), Positives = 67/90 (74%)

Query:    27 GRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLR 86
             GRDW W  + ++  YLKI+  FED R + YSIHQIA  G S+ KAVGEW GPNTVAQ+L+
Sbjct:   117 GRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQIAQMGESQNKAVGEWLGPNTVAQILK 176

Query:    87 KLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
             KL ++DDWSS+  HVA+D+T+V++ V   C
Sbjct:   177 KLVRFDDWSSLAIHVAMDSTVVLDDVYASC 206

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0010506 "regulation of autophagy" evidence=IMP

UNIPROTKB|A6QLH1 ATG4A "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 49/93 (52%), Positives = 70/93 (75%)

Query:    27 GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
             GRDW W    ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct:    96 GRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 155

Query:    86 RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTT 118
             +KLA +D+W+S+  +V++DNT+V+  +KK+C T
Sbjct:   156 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRT 188

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PZ05	ATG4A_BOVIN	3, ., 4, ., 2, 2, ., -	0.5268	0.5822	0.2311	yes	N/A
Q9Y4P1	ATG4B_HUMAN	3, ., 4, ., 2, 2, ., -	0.5106	0.5886	0.2366	yes	N/A
Q5ZIW7	ATG4A_CHICK	3, ., 4, ., 2, 2, ., -	0.5483	0.5822	0.2421	yes	N/A
Q8BGE6	ATG4B_MOUSE	3, ., 4, ., 2, 2, ., -	0.5106	0.5886	0.2366	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
pfam03416	277	pfam03416, Peptidase_C54, Peptidase family C54	1e-35

>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54

 Score =  123 bits (312), Expect = 1e-35
 Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 5/114 (4%)

Query: 27  GRDWQWNVNSKEEA-YLKILKMFEDRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQV 84
           GRDW+W    + +  Y KIL  F D   AP+SIHQ    G S  GK  GEWFGPNTVA++
Sbjct: 58  GRDWRWPAEKEPDEEYKKILAWFGDSPDAPFSIHQFVQMGKSLCGKKPGEWFGPNTVARI 117

Query: 85  LRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVAL 138
           L+KL K+DDWS +  +VA+D T+V + + + C+      +    W  ++  + L
Sbjct: 118 LKKLVKFDDWSGLAVYVAMDGTVVYDDIVEKCSAPNNGQSA---WKPLLLLIPL 168

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF03416	278	Peptidase_C54: Peptidase family C54 This family be	100.0
KOG2674|consensus	409		100.0

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification

Probab=100.00  E-value=2.9e-38  Score=266.99  Aligned_cols=131  Identities=36%  Similarity=0.656  Sum_probs=98.6

Q ss_pred             ccccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhc-CCCCCcccChHHHHHHHHHHhhcCCCCCeEE
Q psy10446         22 PSSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKLAKYDDWSSIVF   99 (158)
Q Consensus        22 ~~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~-gk~pGeWfGPst~a~vlk~L~~~~~~~~l~V   99 (158)
                      .+|++||+||+... +..+.+.+||+||.|+|+|||||||||++|... ||+||||||||++|++|++|+++....+++|
T Consensus        52 ~~~~lgr~~~~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~~~~~l~v  131 (278)
T PF03416_consen   52 LRHHLGRDWRWPDNSDNNEEYRRILSLFQDSPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEADLSGLRV  131 (278)
T ss_dssp             HHHHC-TT--TTTTSS--HHHHHHHHTTSSSTTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC-TTT--EE
T ss_pred             HHHhhcccccccccccCcHHHHHHHHhcCCCCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhccccCceE
Confidence            47899999999866 567899999999999999999999999999875 9999999999999999999999888899999


Q ss_pred             EEecCCceeHHHHHHHhhhccccCCCCCCCceeEEEEeecccc-cccchhhhhhc
Q psy10446        100 HVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNTL-VVNQVKKLCTT  153 (158)
Q Consensus       100 yVa~Dg~vy~ddV~~l~~~~~~~~~~~~~w~plLILIPlRLGl-~in~iy~~c~~  153 (158)
                      ||+.|+++|.+|+.+++..... ......|+|||||||+|||+ ++|+.|.++++
T Consensus       132 ~v~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~  185 (278)
T PF03416_consen  132 YVSSDGTIYYDDVEELCSNSNP-TKQSSWWKPVLLLIPLRLGLDKINPKYIPSLK  185 (278)
T ss_dssp             EE-BTTEEEHHHHHHHHCCS-S------CE--EEEEEEEE-SSSS--GGGHHHHH
T ss_pred             EEeeccccchhHHHHHHhhhcc-ccccccCceEEEEEEeecCCCCCCHHHHHHHH
Confidence            9999999999999998865422 11245679999999999999 79999999875

; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.

>KOG2674|consensus

Probab=100.00  E-value=1.7e-36  Score=266.28  Aligned_cols=133  Identities=41%  Similarity=0.789  Sum_probs=120.3

Q ss_pred             ccccCCCCcccCCCCC-hHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446         22 PSSFSGRDWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH  100 (158)
Q Consensus        22 ~~~~LGRdWR~~~~~~-~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy  100 (158)
                      +++||||||||.++++ ++.|.+||++|.|.|+||||||||+++|...|+++|+|||||++|+++++|..++++..+.+|
T Consensus       112 ~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~~~~~~~~~  191 (409)
T KOG2674|consen  112 ICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSWFGPNTVAQVLKKLARFDPWSSLAVY  191 (409)
T ss_pred             HHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccccCCcHHHHHHHHhhccCCCCCccEE
Confidence            4789999999987655 788999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EecCCceeHHHHHHHhhhcccc--------------CCCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446        101 VALDNTLVVNQVKKLCTTNKRK--------------LAKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN  154 (158)
Q Consensus       101 Va~Dg~vy~ddV~~l~~~~~~~--------------~~~~~~w~plLILIPlRLGl-~in~iy~~c~~~  154 (158)
                      |+.|+.+.++|+.+.|+..+..              .+...+|||||||||||||+ ++||+|.+|+++
T Consensus       192 v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~  260 (409)
T KOG2674|consen  192 VAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKE  260 (409)
T ss_pred             EecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceEEEEEeeecccccChHHHHHHHH
Confidence            9999999999999888764211              11357899999999999999 799999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2cy7_A	396	The Crystal Structure Of Human Atg4b Length = 396		6e-27
2d1i_A	398	Structure Of Human Atg4b Length = 398		6e-27
2zzp_A	357	The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-1		6e-27
2z0d_A	357	The Crystal Structure Of Human Atg4b- Lc3(1-120) Co		7e-27
2p82_A	355	Cysteine Protease Atg4a Length = 355		9e-26

>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b Length = 396

Iteration: 1
 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 96  GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 155
Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 156 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 189

>pdb|2D1I|A Chain A, Structure Of Human Atg4b Length = 398

Iteration: 1
 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 98  GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 157
Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 158 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 191

>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124) Complex Length = 357

Iteration: 1
 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 96  GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 155
Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 156 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 189

>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex Length = 357

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQVL
Sbjct: 96  GRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVL 155
Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           +KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 156 KKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 189

>pdb|2P82|A Chain A, Cysteine Protease Atg4a Length = 355

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 27  GRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 85
           GRDW W    ++ + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTVAQVL
Sbjct: 92  GRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVL 151
Query: 86  RKLAKYDDWSSIVFHVALDNTLVVNQVKKLC 116
           +KLA +D+W+S+  +V++DNT+V+  +KK+C
Sbjct: 152 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMC 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	1e-27
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	1e-25

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Length = 396

 Score =  104 bits (261), Expect = 1e-27
 Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 25  FSGRDWQWNVNSK-EEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQ 83
             GRDW+W    +  ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQ
Sbjct: 94  HLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQ 153

Query: 84  VLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFH 135
           VL+KLA +D WSS+  H+A+DNT+V+ ++++LC T+          +    H
Sbjct: 154 VLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRH 205

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Length = 355

 Score = 98.8 bits (245), Expect = 1e-25
 Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 23  SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
               GRDW W     + + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTV
Sbjct: 88  CRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTV 147

Query: 82  AQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           AQVL+KLA +D+W+S+  +V++DNT+V+  +KK+C   
Sbjct: 148 AQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVL 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	100.0
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	100.0

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22

Probab=100.00  E-value=2e-42  Score=300.23  Aligned_cols=133  Identities=41%  Similarity=0.758  Sum_probs=118.2

Q ss_pred             ccccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446         22 PSSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH  100 (158)
Q Consensus        22 ~~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy  100 (158)
                      .++||||+|||... ++++.|.+||+||+|+|+|||||||||++|.++||+||||||||++|++||+|++++.+++++||
T Consensus        87 ~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~  166 (355)
T 2p82_A           87 ICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVY  166 (355)
T ss_dssp             HHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEE
T ss_pred             HHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhcccccCceEE
Confidence            36799999999654 45789999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EecCCceeHHHHHHHhhhccccC---------------------CCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446        101 VALDNTLVVNQVKKLCTTNKRKL---------------------AKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN  154 (158)
Q Consensus       101 Va~Dg~vy~ddV~~l~~~~~~~~---------------------~~~~~w~plLILIPlRLGl-~in~iy~~c~~~  154 (158)
                      |++||++|.+||.++|.......                     ....+|+|+|||||+|||+ ++|++|.+|++.
T Consensus       167 va~D~~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplRLGld~in~~Y~~~Lk~  242 (355)
T 2p82_A          167 VSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKE  242 (355)
T ss_dssp             ECBTTEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEECCSSSCCGGGHHHHHH
T ss_pred             EecCCcEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEeecCCCcCCHHHHHHHHH
Confidence            99999999999999997653210                     0123699999999999999 799999998864

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A

Probab=100.00  E-value=1.1e-40  Score=292.83  Aligned_cols=132  Identities=40%  Similarity=0.801  Sum_probs=116.4

Q ss_pred             cccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEEE
Q psy10446         23 SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHV  101 (158)
Q Consensus        23 ~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~VyV  101 (158)
                      ++||||+|||.+. .+++.|.+||+||+|+|+|||||||||++|.++||+||||||||++|++||+|++++.+.+++|||
T Consensus        92 ~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~v  171 (396)
T 2cy7_A           92 CRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHI  171 (396)
T ss_dssp             HHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEE
T ss_pred             HHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhcccccCceEEE
Confidence            6899999999754 356789999999999999999999999999999999999999999999999999988899999999


Q ss_pred             ecCCceeHHHHHHHhhhcccc-----------------------CCCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446        102 ALDNTLVVNQVKKLCTTNKRK-----------------------LAKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN  154 (158)
Q Consensus       102 a~Dg~vy~ddV~~l~~~~~~~-----------------------~~~~~~w~plLILIPlRLGl-~in~iy~~c~~~  154 (158)
                      ++|++||.+||.++|......                       .+....|+|+|||||+|||+ ++|++|.++++.
T Consensus       172 a~D~~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlliplRLGld~iNp~Y~~~Lk~  248 (396)
T 2cy7_A          172 AMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKH  248 (396)
T ss_dssp             CCTTEEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEEEEECCSSSCCGGGHHHHHH
T ss_pred             ecCCceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEEEEeecCCcCCHHHHHHHHH
Confidence            999999999999998743110                       01135699999999999999 799999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d2p82a1	334	d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human	1e-31
d2z0da1	350	d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human	5e-30

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Length = 334

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-31
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 23  SSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTV 81
               GRDW W     + + Y +IL+ F DR+   YSIHQ+A  G  EGK++GEWFGPNTV
Sbjct: 67  CRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTV 126

Query: 82  AQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRKLAKYDDWSSIVFHVALDNT 141
           AQVL+KLA +D+W+S+  +V++DNT+V+  +KK+C           D        +  + 
Sbjct: 127 AQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSK 186

Query: 142 LVVNQVKK 149
                   
Sbjct: 187 GTSAYCSA 194

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 5e-30
 Identities = 48/96 (50%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 25  FSGRDWQWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQ 83
             GRDW+W    ++ ++Y  +L  F DR+ + YSIHQIA  G  EGK++G+W+GPNTVAQ
Sbjct: 87  HLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQ 146

Query: 84  VLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTN 119
           VL+KLA +D WSS+  H+A+DNT+V+ ++++LC T+
Sbjct: 147 VLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTS 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2z0da1	350	Cysteine protease ATG4B {Human (Homo sapiens) [Tax	100.0
d2p82a1	334	Cysteine protease ATG4A {Human (Homo sapiens) [Tax	100.0

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-41  Score=289.53  Aligned_cols=133  Identities=40%  Similarity=0.791  Sum_probs=116.7

Q ss_pred             ccccCCCCcccCCC-CChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446         22 PSSFSGRDWQWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH  100 (158)
Q Consensus        22 ~~~~LGRdWR~~~~-~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy  100 (158)
                      .++||||+|||... +.++.|.+||+||.|+|+|||||||||++|.++||+||||||||++|++||+|+++++..+++||
T Consensus        84 ~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~~a~~ik~L~~~~~~~~l~v~  163 (350)
T d2z0da1          84 VCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVH  163 (350)
T ss_dssp             HHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHTTCTTTCCEEE
T ss_pred             HHHhcCCcccccccccCcHHHHHHHHhhcCCCCCCcCHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHhhccccCceEE
Confidence            47899999999754 45778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeHHHHHHHhhhccccC-----------------------CCCCCCceeEEEEeecccc-cccchhhhhhcc
Q psy10446        101 VALDNTLVVNQVKKLCTTNKRKL-----------------------AKYDDWSSIVFHVALDNTL-VVNQVKKLCTTN  154 (158)
Q Consensus       101 Va~Dg~vy~ddV~~l~~~~~~~~-----------------------~~~~~w~plLILIPlRLGl-~in~iy~~c~~~  154 (158)
                      |++||+||+|||.++|....+..                       ....+|+|+|||||+|||+ ++|++|+.|++.
T Consensus       164 va~d~~v~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llliplRLG~d~iN~~Y~~~Lk~  241 (350)
T d2z0da1         164 IAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKH  241 (350)
T ss_dssp             ECCTTEEEHHHHHHHHTCC-------------------------------CCCCEEEEEEEECSSSSCCHHHHHHHHH
T ss_pred             EecCCcEehHHHHHHhcccccccccccccccccccccccccchhhcccccCCcceEEEEeeecCCCcCCHHHHHHHHH
Confidence            99999999999999987543210                       1246899999999999999 799999998763

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-41  Score=285.36  Aligned_cols=132  Identities=41%  Similarity=0.761  Sum_probs=117.8

Q ss_pred             ccccCCCCcccCC-CCChHHHHHHHHhhcCCCCCCCchhHHHHhhhhcCCCCCcccChHHHHHHHHHHhhcCCCCCeEEE
Q psy10446         22 PSSFSGRDWQWNV-NSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFH  100 (158)
Q Consensus        22 ~~~~LGRdWR~~~-~~~~~~~~~IL~lF~D~p~aPFSIH~iv~~G~~~gk~pGeWfGPst~a~vlk~L~~~~~~~~l~Vy  100 (158)
                      .++||||+|||.. .+.++.|.+||+||.|+|+|||||||||++|.++||+||||||||++|++|++|+++++.++++||
T Consensus        66 ~~~~lgr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~G~WfgPs~~a~~i~~L~~~~~~~~l~v~  145 (334)
T d2p82a1          66 ICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVY  145 (334)
T ss_dssp             HHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEE
T ss_pred             HHHhcCCccccccccCccHHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhhccccCceEE
Confidence            4789999999974 455788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeHHHHHHHhhhccccC---------------------CCCCCCceeEEEEeecccc-cccchhhhhhc
Q psy10446        101 VALDNTLVVNQVKKLCTTNKRKL---------------------AKYDDWSSIVFHVALDNTL-VVNQVKKLCTT  153 (158)
Q Consensus       101 Va~Dg~vy~ddV~~l~~~~~~~~---------------------~~~~~w~plLILIPlRLGl-~in~iy~~c~~  153 (158)
                      |++||++|.+||.++|.....+.                     .....|+|+|||||+|||+ ++|++|+.+++
T Consensus       146 v~~d~~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~llliplrLGld~iN~~Y~~~L~  220 (334)
T d2p82a1         146 VSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFK  220 (334)
T ss_dssp             ECBTTEEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEECCSSSCCGGGHHHHH
T ss_pred             EecCCCEehhhHHHHhhcccccccccccccccchhhhhcccccccccccCCceEEEEeeecCCCCCCHHHHHHHH
Confidence            99999999999999986542210                     1235689999999999999 79999999875