Psyllid ID: psy10506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MHRIYGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEcccEEEEEccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcEEEEEcEEEEEEEcccccEEEEEEEEEcccccccEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEccccccccEEEEEEEccccccccEEEEcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccEEEEcccEEEEEccccccccEEEEEEEEccccccccccEEEEcHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccEEEEEccccccccEEEEEEcEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccccccccEEEEEcccEEEEEEcccccccEEEEEEcccHHHccHHHccccccHHHHcccEEEEEccEEEEEEccccccEEEEEEEEcccccHHHccccHHHHcccEEEEEccEEEEEEccccccEEEEEEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEcccccccEEEEEEEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcEEEEEEcccccccEEEEEEEEcccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccEEEEEEccccccEEEEEEEEEEcccccEEEEccc
Coil and Loop (DISEMBL)
mhriygppnpdtvpddgklksevMVKDNRRYYLDLkentrgrflrtADVNLLIIYEQDKQGQQQQEQELATKMLQIQSKRFYLDVKQnrrgrfikvnnipiaiCLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDyyaslgppnpdtvpddgklksevMVKDNRRYYLDLKENTRGRFlrvsqtiprggprsqiaipaqGMIEFRDALTDLLEEfgtedggykvlslvphqvsqtiprggprsqiaipaqGMIEFRDALTDLLEEfgtedggykgelpegrhmrvenknfyfdigqnnrgiYMRVSevsqtiprggprsqiaipaqGMIEFRDALTDLLEEfgtedggykgelpegrhmrvenknfyfdigqnnrgiymrvsehyyiipfdslvvdq
Flexible Loop (DISEMBL)
mhriygppnpdtvpddgklksevmvkdnrryyldlkentrgrflrTADVNLLIIYEQDKQGQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFyldvkqnrrGRFIKVaevgadgrrSQIFLALSVAEQFRGHLSAFSDYYASLGppnpdtvpddgklksevmvkdnrryyldlkentrgrflrvsqtiprggprsqiaipaQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVsqtiprggprsqIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIipfdslvvdq
Low Complexity Region (SEG)
MHRIYGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYeqdkqgqqqqeqeLATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCqqqqeqeLATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Disordered region (IsUnstruct)
************************VKDNRRYYLDLKENTRGRFLRTADVNLLIIYE****************MLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASL*******************VKDNRRYYLDLKENTRGRFLRVSQTIP*****SQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTI*******QIAIPAQGMIEFRDALTDLLEEFGTEDGGYKG*****RHMRVENKNFYFDIGQNNRGIYMRVSEVSQTI*******QIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGEL**GRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVV**
Disordered Region (DISOPRED)
***********************MVKDNRRYYLDLKENTRGRFLRTAD***********************KMLQIQSKRFYLDVK********************************MLQIQSKRFYLDVKQNRRGRFIKVAE*****RRSQIFLALSVAEQFRGHLSAFSDY***********************VKDNRRYYLDLKENTRGRFLRVS***********IAIPAQGMIEFRDALTDLLEEFG***********************************MIEFRDALTDLL*******************MRVENKNFYFDIGQNNRGIYMRVSEVSQT***GGPRSQIAIPAQGMIEFRDALTDLL********************RVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Disordered Region (DISEMBL)
MHRIYGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQD**********LATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Disordered Region (DISPRO)
*HRIYGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDK***QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPP*********KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKV****************PRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTED**YKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHRIYGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSLVVDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q6PHK6	297	Transcriptional activator	no	N/A	0.531	0.777	0.417	7e-49
P42669	321	Transcriptional activator	yes	N/A	0.485	0.657	0.4	6e-47
Q00577	322	Transcriptional activator	yes	N/A	0.485	0.655	0.4	6e-47
Q8AVS4	328	Transcriptional activator	N/A	N/A	0.531	0.704	0.391	4e-46
Q96QR8	312	Transcriptional activator	no	N/A	0.528	0.737	0.380	5e-45
Q68A21	315	Transcriptional activator	no	N/A	0.528	0.730	0.380	6e-45
O35295	324	Transcriptional activator	no	N/A	0.528	0.709	0.373	6e-44
Q6PAC9	323	Transcriptional activator	N/A	N/A	0.347	0.467	0.502	1e-39
Q8R4E6	350	Purine-rich element-bindi	no	N/A	0.547	0.68	0.367	1e-38
Q9UJV8	347	Purine-rich element-bindi	no	N/A	0.537	0.674	0.353	1e-37

>sp|Q6PHK6|PURB_DANRE Transcriptional activator protein Pur-beta OS=Danio rerio GN=purb PE=2 SV=3

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/290 (41%), Positives = 165/290 (56%), Gaps = 59/290 (20%)

Query: 108 QQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGH 167
           ++Q+ QELA+K L IQ+KRFYLDVKQN +GRFIK+AEVGA G +S++ L++SVA +FR +
Sbjct: 22  REQETQELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRDY 81

Query: 168 LSAFSDYYASLGPPNPDTVP-----DDG----KLKSEVMVKDNRRYYLDLKENTRGRFLR 218
           L  F ++YA LGP +P+ +      DDG     LKSE +V++NR+YYLDLKEN RGRFLR
Sbjct: 82  LGDFIEHYAQLGPSSPEQIAQSSGGDDGGPRRALKSEFLVRENRKYYLDLKENQRGRFLR 141

Query: 219 VSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGG 278
           + QT+ RG                                          Q  QTI    
Sbjct: 142 IRQTVNRGPGFGVGG---------------------------GGGPGGGVQAGQTI---- 170

Query: 279 PRSQIAIPAQGMIEFRDALTDLLEEFGTED---------GGYKGELPEGRHMRVENKNFY 329
                A+PAQG+IEFRDAL  L++++G ED          G  GELPEG  + V++K F+
Sbjct: 171 -----ALPAQGLIEFRDALAKLIDDYGGEDEELSGGPGAAGGYGELPEGTSIMVDSKRFF 225

Query: 330 FDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 379
           FD+G N  G+++RVSEV  +      R+ I IP +   +F  A +   EE
Sbjct: 226 FDVGSNKYGVFLRVSEVKPSY-----RNSITIPFKAWGKFGGAFSRYAEE 270

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.
Danio rerio (taxid: 7955)

>sp|P42669|PURA_MOUSE Transcriptional activator protein Pur-alpha OS=Mus musculus GN=Pura PE=1 SV=1

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/285 (40%), Positives = 157/285 (55%), Gaps = 74/285 (25%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           Q + QELA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L
Sbjct: 54  QHETQELASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYL 113

Query: 169 SAFSDYYASLGPPNPDTVPDDGK--------LKSEVMVKDNRRYYLDLKENTRGRFLRVS 220
             F ++YA LGP  P   PD  +        LKSE +V++NR+YY+DLKEN RGRFLR+ 
Sbjct: 114 GDFIEHYAQLGPSQP---PDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIR 170

Query: 221 QTIPR----GGPRSQ-IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIP 275
           QT+ R    G  + Q IA+PAQG+IEFRDAL  L++++G E+                  
Sbjct: 171 QTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYGVEEE----------------- 213

Query: 276 RGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQN 335
                     PA+                          LPEG  + V+NK F+FD+G N
Sbjct: 214 ----------PAE--------------------------LPEGTSLTVDNKRFFFDVGSN 237

Query: 336 NRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
             G++MRVSEV  T      R+ I +P +   +F        EE 
Sbjct: 238 KYGVFMRVSEVKPTY-----RNSITVPYKVWAKFGHTFCKYSEEM 277

This is a probable transcription activator that specifically binds the purine-rich single strand of the PUR element located upstream of the c-Myc gene. May play a role in the initiation of DNA replication and in recombination.

Mus musculus (taxid: 10090)

>sp|Q00577|PURA_HUMAN Transcriptional activator protein Pur-alpha OS=Homo sapiens GN=PURA PE=1 SV=2

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/285 (40%), Positives = 157/285 (55%), Gaps = 74/285 (25%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           Q + QELA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L
Sbjct: 55  QHETQELASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYL 114

Query: 169 SAFSDYYASLGPPNPDTVPDDGK--------LKSEVMVKDNRRYYLDLKENTRGRFLRVS 220
             F ++YA LGP  P   PD  +        LKSE +V++NR+YY+DLKEN RGRFLR+ 
Sbjct: 115 GDFIEHYAQLGPSQP---PDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIR 171

Query: 221 QTIPR----GGPRSQ-IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIP 275
           QT+ R    G  + Q IA+PAQG+IEFRDAL  L++++G E+                  
Sbjct: 172 QTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYGVEEE----------------- 214

Query: 276 RGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQN 335
                     PA+                          LPEG  + V+NK F+FD+G N
Sbjct: 215 ----------PAE--------------------------LPEGTSLTVDNKRFFFDVGSN 238

Query: 336 NRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
             G++MRVSEV  T      R+ I +P +   +F        EE 
Sbjct: 239 KYGVFMRVSEVKPTY-----RNSITVPYKVWAKFGHTFCKYSEEM 278

This is a probable transcription activator that specifically binds the purine-rich single strand of the PUR element located upstream of the MYC gene. May play a role in the initiation of DNA replication and in recombination.

Homo sapiens (taxid: 9606)

>sp|Q8AVS4|PURBB_XENLA Transcriptional activator protein Pur-beta-B OS=Xenopus laevis GN=purb-b PE=2 SV=3

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 164/304 (53%), Gaps = 73/304 (24%)

Query: 107 CQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRG 166
            ++Q+ QELA+K L IQ+KRFYLDVKQN +GRFIK+AEVGA G +S++ L+++VA +FR 
Sbjct: 25  SREQETQELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMAVAAEFRD 84

Query: 167 HLSAFSDYYASLGPPNPDTVPDDG-------------KLKSEVMVKDNRRYYLDLKENTR 213
           +L  F ++YA LGP +P+ +                  LKSE +V++NR+YYLDLKEN R
Sbjct: 85  YLGDFIEHYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQR 144

Query: 214 GRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQT 273
           GRFLR+ QTI RG   S       G+                             Q  QT
Sbjct: 145 GRFLRIRQTINRGPGFSGGTGGGPGL-----------------------------QSGQT 175

Query: 274 IPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDG-----------------GYKGELP 316
           I         A+PAQG+IEFRDAL  L++++G ED                  G  GELP
Sbjct: 176 I---------ALPAQGLIEFRDALAKLIDDYGGEDDEGMGLGSGASGGGAGGGGMYGELP 226

Query: 317 EGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDL 376
           EG  + V++K F+FD+G N  G+++RVSEV  +      R+ I +P +   +F  A    
Sbjct: 227 EGTSITVDSKRFFFDVGSNKYGVFLRVSEVKPSY-----RNSITVPLKAWGKFGGAFCRY 281

Query: 377 LEEF 380
            EE 
Sbjct: 282 SEEM 285

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.

Xenopus laevis (taxid: 8355)

>sp|Q96QR8|PURB_HUMAN Transcriptional activator protein Pur-beta OS=Homo sapiens GN=PURB PE=1 SV=3

 Score =  182 bits (462), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/292 (38%), Positives = 157/292 (53%), Gaps = 62/292 (21%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           +Q+ QELA+K L IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L+++VA +FR  L
Sbjct: 28  EQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSL 87

Query: 169 SAFSDYYASLGPPNPDTVPDDGK--------LKSEVMVKDNRRYYLDLKENTRGRFLRVS 220
             F ++YA LGP +P+ +    +        LKSE +V++NR+YYLDLKEN RGRFLR+ 
Sbjct: 88  GDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 147

Query: 221 QTIPRGGPRSQ-------------IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVP 267
           QT+ RGG                 IA+PAQG+IEFRDAL  L++++G ED          
Sbjct: 148 QTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGG 207

Query: 268 HQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKN 327
                    G                                    ELPEG  + V++K 
Sbjct: 208 AGGPGGGLYG------------------------------------ELPEGTSITVDSKR 231

Query: 328 FYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 379
           F+FD+G N  G+++RVSEV  +      R+ I +P +   +F  A     +E
Sbjct: 232 FFFDVGCNKYGVFLRVSEVKPSY-----RNAITVPFKAWGKFGGAFCRYADE 278

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts. Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q68A21|PURB_RAT Transcriptional activator protein Pur-beta OS=Rattus norvegicus GN=Purb PE=1 SV=3

 Score =  182 bits (461), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/292 (38%), Positives = 157/292 (53%), Gaps = 62/292 (21%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           +Q+ QELA+K L IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L+++VA +FR  L
Sbjct: 31  EQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSL 90

Query: 169 SAFSDYYASLGPPNPDTVPDDGK--------LKSEVMVKDNRRYYLDLKENTRGRFLRVS 220
             F ++YA LGP +P+ +    +        LKSE +V++NR+YYLDLKEN RGRFLR+ 
Sbjct: 91  GDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 150

Query: 221 QTIPRGGPRSQ-------------IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVP 267
           QT+ RGG                 IA+PAQG+IEFRDAL  L++++G ED          
Sbjct: 151 QTVNRGGGGFGGGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGG 210

Query: 268 HQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKN 327
                    G                                    ELPEG  + V++K 
Sbjct: 211 AGGPGGGLYG------------------------------------ELPEGTSITVDSKR 234

Query: 328 FYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 379
           F+FD+G N  G+++RVSEV  +      R+ I +P +   +F  A     +E
Sbjct: 235 FFFDVGCNKYGVFLRVSEVKPSY-----RNAITVPFKAWGKFGGAFCRYADE 281

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts (By similarity). Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs.

Rattus norvegicus (taxid: 10116)

>sp|O35295|PURB_MOUSE Transcriptional activator protein Pur-beta OS=Mus musculus GN=Purb PE=1 SV=3

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 157/292 (53%), Gaps = 62/292 (21%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           +Q+ QELA+K L IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L+++VA +FR  L
Sbjct: 40  EQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSL 99

Query: 169 SAFSDYYASLGPPNPDTVPDDGK--------LKSEVMVKDNRRYYLDLKENTRGRFLRVS 220
             F ++YA LGP +P+ +    +        LKSE +V++NR+YYLDLKEN RGRFLR+ 
Sbjct: 100 GDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 159

Query: 221 QTIPRGGPRSQ-------------IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVP 267
           QT+ RGG                 IA+PAQG+IEFRDAL  L++++G ++          
Sbjct: 160 QTVNRGGGGFGGGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGDEDELAGGPGGG 219

Query: 268 HQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKN 327
                    G                                    ELPEG  + V++K 
Sbjct: 220 AGGPGGGLYG------------------------------------ELPEGTSITVDSKR 243

Query: 328 FYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 379
           F+FD+G N  G+++RVSEV  +      R+ I +P +   +F  A     +E
Sbjct: 244 FFFDVGCNKYGVFLRVSEVKPSY-----RNAITVPFKAWGKFGGAFCRYADE 290

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs (By similarity). Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts.

Mus musculus (taxid: 10090)

>sp|Q6PAC9|PURBA_XENLA Transcriptional activator protein Pur-beta-A OS=Xenopus laevis GN=purb-a PE=2 SV=3

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 26/177 (14%)

Query: 107 CQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRG 166
            ++Q+ QELATK L IQ+KRFYLDVKQN +GRFIK+AEVGA G +S++ L++ VA +FR 
Sbjct: 25  SREQETQELATKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMGVAAEFRD 84

Query: 167 HLSAFSDYYASLGPPNPDTVPDDG-------------KLKSEVMVKDNRRYYLDLKENTR 213
           +L  F ++YA LGP +P+ +                  LKSE +V++NR+YYLDLKEN R
Sbjct: 85  YLGDFIEHYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQR 144

Query: 214 GRFLRVSQTIPRGGPRSQ-------------IAIPAQGMIEFRDALTDLLEEFGTED 257
           GRFLR+ QTI RG   S              IA+PAQG+IEFRDAL  L++++G ED
Sbjct: 145 GRFLRIRQTINRGPGFSGGAGGGAGLQSGQTIALPAQGLIEFRDALAKLIDDYGGED 201

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.

Xenopus laevis (taxid: 8355)

>sp|Q8R4E6|PURG_MOUSE Purine-rich element-binding protein gamma OS=Mus musculus GN=Purg PE=1 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 159/324 (49%), Gaps = 86/324 (26%)

Query: 113 QELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGA------DGRRSQIFLALSVAEQFRG 166
           QELA+K + IQ KRFYLDVKQ+ RGRF+K+AEV        + R+S++ L+LSVA + + 
Sbjct: 61  QELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKD 120

Query: 167 HLSAFSDYYASLG------------------------PPNPDTVPDD----GKLKSEVMV 198
            L  F ++YA LG                        P  P +V  +      LK++ + 
Sbjct: 121 CLGDFIEHYAHLGLKGHRQEHGQSKEQVSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIE 180

Query: 199 KDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDG 258
           +DNR+YYLDLKEN RGRFLR+ QT+ RG           GMI                  
Sbjct: 181 RDNRKYYLDLKENQRGRFLRIRQTMMRG----------TGMI------------------ 212

Query: 259 GYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKG----- 313
           GY   SL            G    I +PAQGMIEFRDAL  L+E++G  D   +      
Sbjct: 213 GYFGHSL------------GQDQTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRCGDDD 260

Query: 314 --ELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRD 371
             ELPEG   RV+NK FYFD+G N  GI+++VSEV     R   R+ I +P +    F +
Sbjct: 261 PLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEV-----RPPYRNTITVPFKAWTRFGE 315

Query: 372 ALTDLLEEFGTEDGGYKGELPEGR 395
                 EE       +K +  +GR
Sbjct: 316 NFIKYEEEMRKICNSHKEKRMDGR 339

Mus musculus (taxid: 10090)

>sp|Q9UJV8|PURG_HUMAN Purine-rich element-binding protein gamma OS=Homo sapiens GN=PURG PE=2 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 156/328 (47%), Gaps = 94/328 (28%)

Query: 113 QELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGA------DGRRSQIFLALSVAEQFRG 166
           QELA+K + IQ KRFYLDVKQ+ RGRF+K+AEV        + R+S++ L+LSVA + + 
Sbjct: 58  QELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKD 117

Query: 167 HLSAFSDYYASLG------------------------PPNPDTVPDD----GKLKSEVMV 198
            L  F ++YA LG                        P  P +V  +      LK++ + 
Sbjct: 118 CLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIE 177

Query: 199 KDNRRYYLDLKENTRGRFLRVSQTIPRG-----------GPRSQIAIPAQGMIEFRDALT 247
           +DNR+YYLDLKEN RGRFLR+ QT+ RG           G    I +PAQGMIEFRDAL 
Sbjct: 178 RDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALV 237

Query: 248 DLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTE 307
            L+E++G  D                                + E R    D L      
Sbjct: 238 QLIEDYGEGD--------------------------------IEERRGGDDDPL------ 259

Query: 308 DGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMI 367
                 ELPEG   RV+NK FYFD+G N  GI+++VSEV     R   R+ I +P +   
Sbjct: 260 ------ELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEV-----RPPYRNTITVPFKAWT 308

Query: 368 EFRDALTDLLEEFGTEDGGYKGELPEGR 395
            F +      EE       +K +  +GR
Sbjct: 309 RFGENFIKYEEEMRKICNSHKEKRMDGR 336

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
170035946	273	transcriptional activator protein Pur-al	0.496	0.791	0.654	3e-92
307200958	270	Transcriptional activator protein Pur-al	0.512	0.825	0.626	4e-90
195450789	274	GK13584 [Drosophila willistoni] gi|19416	0.489	0.777	0.624	2e-88
156538218	324	PREDICTED: transcriptional activator pro	0.480	0.645	0.637	3e-88
328701761	268	PREDICTED: transcriptional activator pro	0.501	0.813	0.613	4e-88
383864047	398	PREDICTED: transcriptional activator pro	0.517	0.565	0.6	2e-87
307190558	298	Transcriptional activator protein Pur-al	0.482	0.704	0.631	3e-87
242020726	226	pur-alpha, putative [Pediculus humanus c	0.508	0.977	0.606	6e-87
350413401	382	PREDICTED: transcriptional activator pro	0.517	0.589	0.6	2e-86
340717286	382	PREDICTED: transcriptional activator pro	0.517	0.589	0.6	2e-86

>gi|170035946|ref|XP_001845827.1| transcriptional activator protein Pur-alpha [Culex quinquefasciatus] gi|167878426|gb|EDS41809.1| transcriptional activator protein Pur-alpha [Culex quinquefasciatus]

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/272 (65%), Positives = 192/272 (70%), Gaps = 56/272 (20%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           QQ EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQIFLALS A +FR HL
Sbjct: 33  QQTEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIFLALSTAAEFRDHL 92

Query: 169 SAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGP 228
           S FSDYYASLGPPNPD VP+DGKLKSE+M+KDNRRYYLDLKEN RGRFLRVSQTI RGGP
Sbjct: 93  STFSDYYASLGPPNPDNVPEDGKLKSEMMIKDNRRYYLDLKENVRGRFLRVSQTITRGGP 152

Query: 229 RSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQ 288
           RSQIAIPAQGMIEFRDALTDLLEEFGT DGG+K                           
Sbjct: 153 RSQIAIPAQGMIEFRDALTDLLEEFGTNDGGFK--------------------------- 185

Query: 289 GMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQ 348
                                   GELPEGRHMRV+NKNFYFDIGQN+RGIYMRVSEV  
Sbjct: 186 ------------------------GELPEGRHMRVDNKNFYFDIGQNSRGIYMRVSEVKS 221

Query: 349 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
                  R+ I +P +    FRD L+D  ++ 
Sbjct: 222 NF-----RTAITVPEKCWSRFRDILSDYCDKM 248

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200958|gb|EFN80947.1| Transcriptional activator protein Pur-alpha [Harpegnathos saltator]

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/281 (62%), Positives = 197/281 (70%), Gaps = 58/281 (20%)

Query: 109 QQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHL 168
           QQ EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HL
Sbjct: 4   QQSEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTASEFRKHL 63

Query: 169 SAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGP 228
           S FSD+YASLGPPNP+ VPDDGKLKSE+MVKDNRRYYLDLKEN+RGRFLRVSQTI RGGP
Sbjct: 64  STFSDFYASLGPPNPENVPDDGKLKSEMMVKDNRRYYLDLKENSRGRFLRVSQTITRGGP 123

Query: 229 RSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQ 288
           R+QIAIPAQGMIEFRDALTDLLEEFGT+DGG+K                           
Sbjct: 124 RTQIAIPAQGMIEFRDALTDLLEEFGTDDGGFK--------------------------- 156

Query: 289 GMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQ 348
                                   G+LPEGR+MRV++KNFYFDIGQNNRGIYMR+SEV  
Sbjct: 157 ------------------------GDLPEGRYMRVDSKNFYFDIGQNNRGIYMRISEVKT 192

Query: 349 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKG 389
                  R+ I +P +    FRD   D  E+   ++GG  G
Sbjct: 193 NF-----RTAITVPEKSWARFRDIFADYCEKM--KEGGAGG 226

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450789|ref|XP_002072633.1| GK13584 [Drosophila willistoni] gi|194168718|gb|EDW83619.1| GK13584 [Drosophila willistoni]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/269 (62%), Positives = 187/269 (69%), Gaps = 56/269 (20%)

Query: 112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAF 171
           EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+F
Sbjct: 41  EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF 100

Query: 172 SDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQ 231
           SDYYASLGPPN D +P+DGKLKSE+M+KDNRRYYLDLKEN RGRFLRVSQTI RGGPRSQ
Sbjct: 101 SDYYASLGPPNTDNLPEDGKLKSEMMIKDNRRYYLDLKENARGRFLRVSQTITRGGPRSQ 160

Query: 232 IAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMI 291
           IA+PAQGMIEFRDALTDLLEEFG+ DGG+K                              
Sbjct: 161 IALPAQGMIEFRDALTDLLEEFGSNDGGFK------------------------------ 190

Query: 292 EFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIP 351
                                GELPE RHM+V+NKNFYFDIGQNNRG+YMR+SEV     
Sbjct: 191 ---------------------GELPEERHMKVDNKNFYFDIGQNNRGVYMRISEVKNNF- 228

Query: 352 RGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
               R+ I IP +    FRD   D  ++ 
Sbjct: 229 ----RTSITIPEKCWTRFRDIFNDYCDKM 253

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538218|ref|XP_001601888.1| PREDICTED: transcriptional activator protein Pur-alpha-like [Nasonia vitripennis]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/265 (63%), Positives = 188/265 (70%), Gaps = 56/265 (21%)

Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQN+RGRFIKVAE+GADGRRSQIFLALS A +FR HLS FSDY
Sbjct: 40  LATKMLQIQSKRFYLDVKQNKRGRFIKVAEIGADGRRSQIFLALSTASEFRDHLSTFSDY 99

Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPPNP+ VPDDGKLKSE+MVKDNRRYYLDLKEN+RGRFLRVSQTI RGGPR+QIAI
Sbjct: 100 YASLGPPNPENVPDDGKLKSEMMVKDNRRYYLDLKENSRGRFLRVSQTITRGGPRTQIAI 159

Query: 235 PAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFR 294
           PAQGMIEFRDALTDLLEEFGT+DGG+K                                 
Sbjct: 160 PAQGMIEFRDALTDLLEEFGTDDGGFK--------------------------------- 186

Query: 295 DALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGG 354
                             G+LP+GR+MRV+NKNFYFDIGQNNRGIYMR+SEV        
Sbjct: 187 ------------------GDLPDGRYMRVDNKNFYFDIGQNNRGIYMRISEVKTNF---- 224

Query: 355 PRSQIAIPAQGMIEFRDALTDLLEE 379
            R+ I +P +   +FRD   D  E+
Sbjct: 225 -RTAITVPEKSWAKFRDVFADYCEK 248

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701761|ref|XP_001952609.2| PREDICTED: transcriptional activator protein Pur-alpha-like [Acyrthosiphon pisum]

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/274 (61%), Positives = 190/274 (69%), Gaps = 56/274 (20%)

Query: 108 QQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGH 167
           QQ  EQELATKMLQIQSKRFYLDVKQNRRG+FIKVAE+GADGRRSQIFLALS A  FR H
Sbjct: 30  QQSNEQELATKMLQIQSKRFYLDVKQNRRGKFIKVAEIGADGRRSQIFLALSTAADFRDH 89

Query: 168 LSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGG 227
           L  FS++Y+ LGPPNPDTVP+DGKLKSE+M+KDNRRYYLDLKEN RGRFLRVSQTI RGG
Sbjct: 90  LGTFSEFYSQLGPPNPDTVPEDGKLKSEMMIKDNRRYYLDLKENARGRFLRVSQTITRGG 149

Query: 228 PRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPA 287
           PRSQ+AIPAQGMIEFRD LTDLL+EFGT+DGG+K                          
Sbjct: 150 PRSQVAIPAQGMIEFRDNLTDLLDEFGTDDGGFK-------------------------- 183

Query: 288 QGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVS 347
                                    G+LP+GRHMRV+NKNFYFD+GQNNRGIYMR+SEV 
Sbjct: 184 -------------------------GDLPDGRHMRVDNKNFYFDVGQNNRGIYMRISEV- 217

Query: 348 QTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFG 381
               +G  R+ I +P +    FRD   D  E+  
Sbjct: 218 ----KGNFRTAITVPEKSWSRFRDYFRDYCEKMA 247

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864047|ref|XP_003707491.1| PREDICTED: transcriptional activator protein Pur-beta-like [Megachile rotundata]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 192/290 (66%), Gaps = 65/290 (22%)

Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR +LS FSD+
Sbjct: 55  LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTASEFRNYLSTFSDF 114

Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPP+ + VPDDGKLKSEVM KDNRRYYLDLKENTRGRFLRVSQTI RGGPRSQIAI
Sbjct: 115 YASLGPPSSENVPDDGKLKSEVMTKDNRRYYLDLKENTRGRFLRVSQTITRGGPRSQIAI 174

Query: 235 PAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFR 294
           PAQGMIEFRDALTDLLEE+GT+DGG+K                                 
Sbjct: 175 PAQGMIEFRDALTDLLEEYGTDDGGFK--------------------------------- 201

Query: 295 DALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGG 354
                             G+LPEGR+MRV++KNFYFDIGQNNRGIYMR+SEV        
Sbjct: 202 ------------------GDLPEGRYMRVDSKNFYFDIGQNNRGIYMRISEVKTHF---- 239

Query: 355 PRSQIAIPAQGMIEFRDALTDLLEEF---------GTEDGGYKGELPEGR 395
            R+ I +P +    FRD   D  E           G   GG    LPEGR
Sbjct: 240 -RTAITVPEKSWARFRDIFADYCERMRERGAGSSVGMNSGGGGNVLPEGR 288

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190558|gb|EFN74545.1| Transcriptional activator protein Pur-alpha [Camponotus floridanus]

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/266 (63%), Positives = 187/266 (70%), Gaps = 56/266 (21%)

Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS FSD+
Sbjct: 42  LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTASEFRDHLSTFSDF 101

Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPPNP+ VPDDGKLKSE+MVKDNRRYYLDLKEN+RGRFLRVSQTI RGGPR+QIAI
Sbjct: 102 YASLGPPNPENVPDDGKLKSEMMVKDNRRYYLDLKENSRGRFLRVSQTITRGGPRTQIAI 161

Query: 235 PAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFR 294
           PAQGMIEFRDALTDLLEEFGT+DGG+K                                 
Sbjct: 162 PAQGMIEFRDALTDLLEEFGTDDGGFK--------------------------------- 188

Query: 295 DALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGG 354
                             G+LPEGR+MRV++KNFYFDIGQNNRGIYMR+SEV        
Sbjct: 189 ------------------GDLPEGRYMRVDSKNFYFDIGQNNRGIYMRISEVKTNF---- 226

Query: 355 PRSQIAIPAQGMIEFRDALTDLLEEF 380
            R+ I +P +    FRD   D  E+ 
Sbjct: 227 -RTAITVPEKSWARFRDIFADYCEKM 251

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020726|ref|XP_002430803.1| pur-alpha, putative [Pediculus humanus corporis] gi|212516000|gb|EEB18065.1| pur-alpha, putative [Pediculus humanus corporis]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/282 (60%), Positives = 191/282 (67%), Gaps = 61/282 (21%)

Query: 119 MLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASL 178
           MLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQIFLALS A +FR HLS FSDYYASL
Sbjct: 1   MLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIFLALSTAAEFRDHLSTFSDYYASL 60

Query: 179 GPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQG 238
           GPPNP+ VP+DGKLKSE+M+K+N+RY+LDLKEN+RGRFLRVSQTIPRGGPRSQIAIPAQG
Sbjct: 61  GPPNPENVPEDGKLKSEMMIKENKRYFLDLKENSRGRFLRVSQTIPRGGPRSQIAIPAQG 120

Query: 239 MIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALT 298
           MIEFRDALTDLLEEFGTEDGGYK                                     
Sbjct: 121 MIEFRDALTDLLEEFGTEDGGYK------------------------------------- 143

Query: 299 DLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQ 358
                         GELPEG+HMRVENKNFYFDIGQNNRGIYMR+SEV         R+ 
Sbjct: 144 --------------GELPEGKHMRVENKNFYFDIGQNNRGIYMRISEVKTNF-----RTA 184

Query: 359 IAIPAQGMIEFRDALTDLLEEFGTED-----GGYKGELPEGR 395
           I +P +    FRD   D  ++    +     GG  G  P+ +
Sbjct: 185 ITVPEKSWARFRDIFADYCDKMKEREKNAIGGGDTGSQPQTK 226

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413401|ref|XP_003489984.1| PREDICTED: transcriptional activator protein Pur-alpha-like isoform 1 [Bombus impatiens]

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 192/290 (66%), Gaps = 65/290 (22%)

Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR +LS FSD+
Sbjct: 40  LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTASEFRNYLSTFSDF 99

Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPPN + VPDDGKLKSEVM KDNRRYYLDLKENTRGRFLRVSQTI RGGPR+QIAI
Sbjct: 100 YASLGPPNSENVPDDGKLKSEVMTKDNRRYYLDLKENTRGRFLRVSQTITRGGPRTQIAI 159

Query: 235 PAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFR 294
           PAQGMIEFRDALTDLLEE+GT+DGG+K                                 
Sbjct: 160 PAQGMIEFRDALTDLLEEYGTDDGGFK--------------------------------- 186

Query: 295 DALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGG 354
                             G+LPEGR+MRV++KNFYFDIGQNNRGIYMR+SEV        
Sbjct: 187 ------------------GDLPEGRYMRVDSKNFYFDIGQNNRGIYMRISEVKTHF---- 224

Query: 355 PRSQIAIPAQGMIEFRDALTDLLEEF---------GTEDGGYKGELPEGR 395
            R+ I +P +    FRD   D  E           G   GG    LPEGR
Sbjct: 225 -RTAITVPEKSWERFRDIFADYCERMRERGAGSNVGMNSGGGGNVLPEGR 273

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717286|ref|XP_003397116.1| PREDICTED: transcriptional activator protein Pur-alpha-like [Bombus terrestris]

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 192/290 (66%), Gaps = 65/290 (22%)

Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR +LS FSD+
Sbjct: 40  LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTASEFRNYLSTFSDF 99

Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPPN + VPDDGKLKSEVM KDNRRYYLDLKENTRGRFLRVSQTI RGGPR+QIAI
Sbjct: 100 YASLGPPNSENVPDDGKLKSEVMTKDNRRYYLDLKENTRGRFLRVSQTITRGGPRTQIAI 159

Query: 235 PAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFR 294
           PAQGMIEFRDALTDLLEE+GT+DGG+K                                 
Sbjct: 160 PAQGMIEFRDALTDLLEEYGTDDGGFK--------------------------------- 186

Query: 295 DALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGG 354
                             G+LPEGR+MRV++KNFYFDIGQNNRGIYMR+SEV        
Sbjct: 187 ------------------GDLPEGRYMRVDSKNFYFDIGQNNRGIYMRISEVKTHF---- 224

Query: 355 PRSQIAIPAQGMIEFRDALTDLLEEF---------GTEDGGYKGELPEGR 395
            R+ I +P +    FRD   D  E           G   GG    LPEGR
Sbjct: 225 -RTAITVPEKSWERFRDIFADYCERMRERGAGSNVGMNSGGGGNVLPEGR 273

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
FB|FBgn0022361	275	Pur-alpha "Purine-rich binding	0.333	0.527	0.868	2.3e-64
ZFIN|ZDB-GENE-040426-1478	297	purbb "purine-rich element bin	0.257	0.377	0.578	6.1e-52
ZFIN|ZDB-GENE-040624-8	287	pura "purine-rich element bind	0.328	0.498	0.566	7.5e-41
UNIPROTKB|E1BMW9	322	PURA "Uncharacterized protein"	0.328	0.444	0.535	5.5e-38
UNIPROTKB|Q00577	322	PURA "Transcriptional activato	0.328	0.444	0.535	5.5e-38
UNIPROTKB|I3LCN6	322	PURA "Uncharacterized protein"	0.328	0.444	0.535	5.5e-38
MGI|MGI:103079	321	Pura "purine rich element bind	0.328	0.445	0.535	5.5e-38
UNIPROTKB|Q96QR8	312	PURB "Transcriptional activato	0.590	0.823	0.387	3e-37
MGI|MGI:1338779	324	Purb "purine rich element bind	0.478	0.641	0.414	8e-37
UNIPROTKB|Q9MYX6	321	Q9MYX6 "DNA binding protein pu	0.326	0.442	0.529	1.3e-36

FB|FBgn0022361 Pur-alpha "Purine-rich binding protein-alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 126/145 (86%), Positives = 135/145 (93%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+FSDY
Sbjct:    44 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDY 103

Query:   175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
             YASLGPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLRVSQTI RGGPRSQIA+
Sbjct:   104 YASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIAL 163

Query:   235 PAQGMIEFRDALTDLLEEFGTEDGG 259
             PAQGMIEFRDALTDLLEEFG  DGG
Sbjct:   164 PAQGMIEFRDALTDLLEEFGANDGG 188

GO:0003697 "single-stranded DNA binding" evidence=NAS

GO:0003677 "DNA binding" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

ZFIN|ZDB-GENE-040426-1478 purbb "purine-rich element binding protein Bb" [Danio rerio (taxid:7955)]

 Score = 347 (127.2 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 70/121 (57%), Positives = 92/121 (76%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K L IQ+KRFYLDVKQN +GRFIK+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    29 LASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRDYLGDFIEH 88

Query:   175 YASLGPPNPDTVP-----DDG----KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPR 225
             YA LGP +P+ +      DDG     LKSE +V++NR+YYLDLKEN RGRFLR+ QT+ R
Sbjct:    89 YAQLGPSSPEQIAQSSGGDDGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNR 148

Query:   226 G 226
             G
Sbjct:   149 G 149

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040624-8 pura "purine-rich element binding protein A" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 85/150 (56%), Positives = 116/150 (77%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    42 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH 101

Query:   175 YASLGPPNPDTVPDDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG----GP 228
             YA LGP NPD   D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG      
Sbjct:   102 YAQLGPSNPDMPQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGST 161

Query:   229 RSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
             + Q IA+PAQG+IEFRDAL  L++++G ED
Sbjct:   162 QGQTIALPAQGLIEFRDALAKLIDDYGVED 191

GO:0003690 "double-stranded DNA binding" evidence=IDA

UNIPROTKB|E1BMW9 PURA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/153 (53%), Positives = 115/153 (75%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    61 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH 120

Query:   175 YASLGPPNPDTVP---DDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--- 226
             YA LGP  P  +    D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG   
Sbjct:   121 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL 180

Query:   227 -GPRSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
                + Q IA+PAQG+IEFRDAL  L++++G E+
Sbjct:   181 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEE 213

GO:0046332 "SMAD binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

UNIPROTKB|Q00577 PURA "Transcriptional activator protein Pur-alpha" [Homo sapiens (taxid:9606)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/153 (53%), Positives = 115/153 (75%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    61 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH 120

Query:   175 YASLGPPNPDTVP---DDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--- 226
             YA LGP  P  +    D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG   
Sbjct:   121 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL 180

Query:   227 -GPRSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
                + Q IA+PAQG+IEFRDAL  L++++G E+
Sbjct:   181 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEE 213

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IC

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3LCN6 PURA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/153 (53%), Positives = 115/153 (75%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    61 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH 120

Query:   175 YASLGPPNPDTVP---DDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--- 226
             YA LGP  P  +    D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG   
Sbjct:   121 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL 180

Query:   227 -GPRSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
                + Q IA+PAQG+IEFRDAL  L++++G E+
Sbjct:   181 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEE 213

GO:0046332 "SMAD binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

MGI|MGI:103079 Pura "purine rich element binding protein A" [Mus musculus (taxid:10090)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/153 (53%), Positives = 115/153 (75%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L++SVA +FR +L  F ++
Sbjct:    60 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH 119

Query:   175 YASLGPPNPDTVP---DDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--- 226
             YA LGP  P  +    D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG   
Sbjct:   120 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL 179

Query:   227 -GPRSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
                + Q IA+PAQG+IEFRDAL  L++++G E+
Sbjct:   180 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEE 212

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003691 "double-stranded telomeric DNA binding" evidence=ISO

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=NAS

GO:0007093 "mitotic cell cycle checkpoint" evidence=NAS

GO:0007399 "nervous system development" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=NAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0030154 "cell differentiation" evidence=NAS

GO:0030425 "dendrite" evidence=IDA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046332 "SMAD binding" evidence=IDA

UNIPROTKB|Q96QR8 PURB "Transcriptional activator protein Pur-beta" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 117/302 (38%), Positives = 161/302 (53%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K L IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L+++VA +FR  L  F ++
Sbjct:    34 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH 93

Query:   175 YASLGPPNPDTVP---DDG-----KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG 226
             YA LGP +P+ +    ++G      LKSE +V++NR+YYLDLKEN RGRFLR+ QT+ RG
Sbjct:    94 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG 153

Query:   227 GPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAI- 285
             G     A P  G ++     T  L   G  +    +  L+          GG   ++A  
Sbjct:   154 GGGFG-AGPGPGGLQ--SGQTIALPAQGLIEFRDALAKLIDDY-------GGEDDELAGG 203

Query:   286 PAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 345
             P  G               G   GG  GELPEG  + V++K F+FD+G N  G+++RVSE
Sbjct:   204 PGGGA--------------GGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSE 249

Query:   346 VSQ------TIPR---GGPRSQIAIPAQGMIEFRDALTD-LLEEFGTEDGGYKGELPEGR 395
             V        T+P    G         A  M E ++   D L E  G   GG  GE  EG 
Sbjct:   250 VKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG--GEESEGE 307

Query:   396 HM 397
              +
Sbjct:   308 EV 309

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0045637 "regulation of myeloid cell differentiation" evidence=NAS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:1338779 Purb "purine rich element binding protein B" [Mus musculus (taxid:10090)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 100/241 (41%), Positives = 140/241 (58%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K L IQ+KRFYLDVKQN +GRF+K+AEVGA G +S++ L+++VA +FR  L  F ++
Sbjct:    46 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH 105

Query:   175 YASLGPPNPDTVP---DDG-----KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG 226
             YA LGP +P+ +    ++G      LKSE +V++NR+YYLDLKEN RGRFLR+ QT+ RG
Sbjct:   106 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG 165

Query:   227 GPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAI- 285
             G       P  G ++     T  L   G  +    +  L+          GG   ++A  
Sbjct:   166 GGGFGGG-PGPGGLQ--SGQTIALPAQGLIEFRDALAKLIDDY-------GGDEDELAGG 215

Query:   286 PAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 345
             P  G               G   GG  GELPEG  + V++K F+FD+G N  G+++RVSE
Sbjct:   216 PGGGA--------------GGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSE 261

Query:   346 V 346
             V
Sbjct:   262 V 262

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=ISO;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=NAS

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=NAS

GO:0030154 "cell differentiation" evidence=NAS

GO:0032422 "purine-rich negative regulatory element binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0046332 "SMAD binding" evidence=IDA

UNIPROTKB|Q9MYX6 Q9MYX6 "DNA binding protein pur-alpha" [Ovis aries (taxid:9940)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 81/153 (52%), Positives = 114/153 (74%)

Query:   115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
             LA+K + IQ+KRFYLDVKQN +GRF+K+AEVGA G ++ + L++SVA +FR +L  F ++
Sbjct:    61 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKT-LTLSMSVAVEFRDYLGDFIEH 119

Query:   175 YASLGPPNPDTVP---DDGK--LKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--- 226
             YA LGP  P  +    D+ +  LKSE +V++NR+YY+DLKEN RGRFLR+ QT+ RG   
Sbjct:   120 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL 179

Query:   227 -GPRSQ-IAIPAQGMIEFRDALTDLLEEFGTED 257
                + Q IA+PAQG+IEFRDAL  L++++G E+
Sbjct:   180 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEE 212

GO:0003690 "double-stranded DNA binding" evidence=ISS

GO:0003691 "double-stranded telomeric DNA binding" evidence=ISS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007399 "nervous system development" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046332 "SMAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	435
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	4e-94
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	6e-47
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	1e-23
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	1e-23
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	2e-23
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	3e-21
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	1e-15
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	4e-09
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	7e-09
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	8e-09

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score =  282 bits (722), Expect = 4e-94
 Identities = 128/271 (47%), Positives = 161/271 (59%), Gaps = 57/271 (21%)

Query: 112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAF 171
           EQELA+K L IQ+KRFYLDVKQN RGRFIK+AEVGA GR+S+I L++SVA +FR +LS F
Sbjct: 1   EQELASKRLDIQNKRFYLDVKQNARGRFIKIAEVGAGGRKSRITLSMSVAAEFRDYLSKF 60

Query: 172 SDYYASLGPPNPDTV--PDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPR 229
            ++YA LGP N + +       LKSE +V+DNR+YYLDLKEN RGRFLR++QT+ RGG  
Sbjct: 61  IEHYAQLGPQNGEHLPEDGRSALKSEFLVRDNRKYYLDLKENQRGRFLRIAQTVMRGGS- 119

Query: 230 SQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQG 289
                                                           G R QIA+PAQG
Sbjct: 120 ------------------------------------------------GQRQQIALPAQG 131

Query: 290 MIEFRDALTDLLEEFGTEDGG-YKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQ 348
           MIEFRDALTDL+E++G  D      ELPEG  + V+NK FYFD+G N RG++MR+SEV  
Sbjct: 132 MIEFRDALTDLIEDYGEGDEEDEPAELPEGTSLTVDNKRFYFDVGSNKRGVFMRISEV-- 189

Query: 349 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 379
              +   R+ I +P +    FRD      EE
Sbjct: 190 ---KPNYRNSITVPEKAWTRFRDIFCKYSEE 217

This family represents most of the length of the protein. Length = 218

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score =  160 bits (407), Expect = 6e-47
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 47/222 (21%)

Query: 201 NRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGY 260
           N+R+YLD+K+N RGRF+++++ +  GG +S+I +      EFRD L+  +E        Y
Sbjct: 13  NKRFYLDVKQNARGRFIKIAE-VGAGGRKSRITLSMSVAAEFRDYLSKFIEH-------Y 64

Query: 261 KVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRH 320
             L     +      R   +S+                                      
Sbjct: 65  AQLGPQNGEHLPEDGRSALKSEF------------------------------------- 87

Query: 321 MRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
           +  +N+ +Y D+ +N RG ++R+++       G  R QIA+PAQGMIEFRDALTDL+E++
Sbjct: 88  LVRDNRKYYLDLKENQRGRFLRIAQTVMRGGSG-QRQQIALPAQGMIEFRDALTDLIEDY 146

Query: 381 GTEDGG-YKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 421
           G  D      ELPEG  + V+NK FYFD+G N RG++MR+SE
Sbjct: 147 GEGDEEDEPAELPEGTSLTVDNKRFYFDVGSNKRGVFMRISE 188

This family represents most of the length of the protein. Length = 218

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score = 97.9 bits (244), Expect = 1e-23
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 28/229 (12%)

Query: 28  NRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQQQEQELATKMLQIQSKRFYLDVKQ 87
           N+R+YLD+K+N RGRF++ A+V           G   ++  +   M      R YL    
Sbjct: 13  NKRFYLDVKQNARGRFIKIAEV-----------GAGGRKSRITLSMSVAAEFRDYL---- 57

Query: 88  NRRGRFIK-VNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEV- 145
               +FI+    +      +  +     L ++ L   ++++YLD+K+N+RGRF+++A+  
Sbjct: 58  ---SKFIEHYAQLGPQNGEHLPEDGRSALKSEFLVRDNRKYYLDLKENQRGRFLRIAQTV 114

Query: 146 --GADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRR 203
             G  G+R QI L      +FR    A +D     G  + +  P +   +   +  DN+R
Sbjct: 115 MRGGSGQRQQIALPAQGMIEFR---DALTDLIEDYGEGDEEDEPAELP-EGTSLTVDNKR 170

Query: 204 YYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEE 252
           +Y D+  N RG F+R+S+   +   R+ I +P +    FRD      EE
Sbjct: 171 FYFDVGSNKRGVFMRISEV--KPNYRNSITVPEKAWTRFRDIFCKYSEE 217

This family represents most of the length of the protein. Length = 218

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 114 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSD 173
           ELA+K L +++KRFY DVK+NRRGRF++++EV  +G RS I +    A +FR  L+   +
Sbjct: 1   ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALTKLIE 60

Query: 174 YYA 176
            Y 
Sbjct: 61  KYG 63

Length = 63

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 191 KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLL 250
           +L S+ +  +N+R+Y D+KEN RGRFLR+S+    GG RS I +P QG  EFRDALT L+
Sbjct: 1   ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGG-RSSITVPEQGAAEFRDALTKLI 59

Query: 251 EEFG 254
           E++G
Sbjct: 60  EKYG 63

Length = 63

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 86.5 bits (215), Expect = 3e-21
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 315 LPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALT 374
               + + VENK FYFD+ +N RG ++R+SEV       G RS I +P QG  EFRDALT
Sbjct: 1   ELASKKLTVENKRFYFDVKENRRGRFLRISEVK----NNGGRSSITVPEQGAAEFRDALT 56

Query: 375 DLLEEFG 381
            L+E++G
Sbjct: 57  KLIEKYG 63

Length = 63

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 34/125 (27%)

Query: 6   GPPNPDTV--PDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQ 63
           GP N + +       LKSE +V+DNR+YYLDLKEN RGRFLR A     ++     Q QQ
Sbjct: 68  GPQNGEHLPEDGRSALKSEFLVRDNRKYYLDLKENQRGRFLRIAQ---TVMRGGSGQRQQ 124

Query: 64  ----------------------------QQEQELA-TKMLQIQSKRFYLDVKQNRRGRFI 94
                                        +  EL     L + +KRFY DV  N+RG F+
Sbjct: 125 IALPAQGMIEFRDALTDLIEDYGEGDEEDEPAELPEGTSLTVDNKRFYFDVGSNKRGVFM 184

Query: 95  KVNNI 99
           +++ +
Sbjct: 185 RISEV 189

This family represents most of the length of the protein. Length = 218

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 18 KLKSEVMVKDNRRYYLDLKENTRGRFLRTADV 49
          +L S+ +  +N+R+Y D+KEN RGRFLR ++V
Sbjct: 1  ELASKKLTVENKRFYFDVKENRRGRFLRISEV 32

Length = 63

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 21/113 (18%)

Query: 321 MRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380
           + ++NK FY D+ QN RG +++++EV      GG +S+I +      EFRD L+  +E +
Sbjct: 9   LDIQNKRFYLDVKQNARGRFIKIAEVGA----GGRKSRITLSMSVAAEFRDYLSKFIEHY 64

Query: 381 GT------------EDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 421
                              K E      +  +N+ +Y D+ +N RG ++R+++
Sbjct: 65  AQLGPQNGEHLPEDGRSALKSEF-----LVRDNRKYYLDLKENQRGRFLRIAQ 112

This family represents most of the length of the protein. Length = 218

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 391 LPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 421
               + + VENK FYFD+ +N RG ++R+SE
Sbjct: 1   ELASKKLTVENKRFYFDVKENRRGRFLRISE 31

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
PF04845	218	PurA: PurA ssDNA and RNA-binding protein; InterPro	100.0
KOG3074|consensus	263		100.0
PF04845	218	PurA: PurA ssDNA and RNA-binding protein; InterPro	100.0
KOG3074|consensus	263		100.0
smart00712	63	PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamm	99.86
smart00712	63	PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamm	99.85
PF11680	124	DUF3276: Protein of unknown function (DUF3276); In	97.62
PF11680	124	DUF3276: Protein of unknown function (DUF3276); In	96.9

>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution

Probab=100.00  E-value=1.8e-81  Score=591.13  Aligned_cols=214  Identities=64%  Similarity=1.081  Sum_probs=124.0

Q ss_pred             hhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCC-
Q psy10506        112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDG-  190 (435)
Q Consensus       112 e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~~lp~~~-  190 (435)
                      |||||||+||||+||||||||||.|||||||||+|++|+||+|+|+|++|++|||||++|++||++|+|++++.+++++ 
T Consensus         1 e~eLask~l~iq~KrfYlDVkqN~RGrfiKiaE~~~~g~ksri~lsm~~A~efrd~L~~f~~~ya~l~p~n~~~~~~~~~   80 (218)
T PF04845_consen    1 EQELASKMLQIQNKRFYLDVKQNRRGRFIKIAEVGAGGRKSRITLSMSAAAEFRDHLGDFIEFYAQLGPSNPENLPDEGR   80 (218)
T ss_dssp             -EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-TT--EEEEEEEHHHHHHHHHHHHHHHHHHHCS-S--SS---TT--
T ss_pred             CchhhhhheEecceEEEEEecccCcceeEEEeeccCCCCcceEEEechhHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             -CccceeeeeccceEEEecccCCccceeEEEeeecCC--CCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecccc
Q psy10506        191 -KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--GPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVP  267 (435)
Q Consensus       191 -~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rg--g~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p  267 (435)
                       .|+||+|++++|+||||||||+|||||||+|++++|  |+|+||+|||+||.+|+++|.+++++|++++.         
T Consensus        81 ~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~~~~~~~~~R~qIaiPa~G~~ef~~al~~lid~~g~~~~---------  151 (218)
T PF04845_consen   81 SELKSEKINVENRRYYLDLKENSRGRFLRISQTVSRGPRGRRSQIAIPAQGMIEFRDALTDLIDEFGEDDE---------  151 (218)
T ss_dssp             -ECEEEEEEETTEEEEEEEEEETTEEEEEEEEEETTT----EEEEEEEGGGHHHHHHHHHHHHHHH--------------
T ss_pred             ceeeehheeeccceEEEEcccccCcceEEEEEeeccCCCCCccEEEEehHHHHHHHHHHHHHHHHhcCccc---------
Confidence             999999999999999999999999999999998877  88999999999998888877777777763210         


Q ss_pred             cccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeee
Q psy10506        268 HQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVS  347 (435)
Q Consensus       268 ~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~  347 (435)
                                                               ....++||++++|++|||+||||+|+|+||+|||||||+
T Consensus       152 -----------------------------------------~~~~~~Lpes~~lrvdnK~FyFD~g~N~rG~fLrISEv~  190 (218)
T PF04845_consen  152 -----------------------------------------EDEQGELPESKSLRVDNKRFYFDVGSNRRGVFLRISEVK  190 (218)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------ccccccCCCCcEEEECCeEEEEECCCCCCeeEEEecccC
Confidence                                                     123567999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEechhhHHHHHHHHHHHHHHh
Q psy10506        348 QTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF  380 (435)
Q Consensus       348 qt~~rg~~RssItIPaqg~~eFrdaL~~~ide~  380 (435)
                           +++|++||||+++|++||++|++|+++|
T Consensus       191 -----~~~Rs~ItIP~~~w~~Fr~~~~~~~e~M  218 (218)
T PF04845_consen  191 -----SNFRSAITIPESAWSRFRDIFNEYAEEM  218 (218)
T ss_dssp             ---------------------------------
T ss_pred             -----CCCCceeeCCHHHHHHHHHHHHHHHhcC
Confidence                 8999999999999999999999999998

Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.

>KOG3074|consensus

Probab=100.00  E-value=1.2e-74  Score=549.98  Aligned_cols=225  Identities=52%  Similarity=0.862  Sum_probs=203.6

Q ss_pred             ccchhhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCC--C
Q psy10506        108 QQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPD--T  185 (435)
Q Consensus       108 ~~~~e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~--~  185 (435)
                      ..+++||||||+||||+||||||||||+|||||||||+|++++ |||||||++|+||||+|++|++|||+|+|++++  .
T Consensus        18 ~~~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~~~~-Sri~ls~s~aaef~d~l~~f~~~ya~lg~~~~~~~~   96 (263)
T KOG3074|consen   18 GGGEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGAGGR-SRIILSLSVAAEFRDILNDFIEHYAQLGPPPPELAA   96 (263)
T ss_pred             ccchhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEeccCCc-ceEEEehhhHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence            3578999999999999999999999999999999999997755 999999999999999999999999999998864  4


Q ss_pred             CCCCCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecc
Q psy10506        186 VPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSL  265 (435)
Q Consensus       186 lp~~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l  265 (435)
                      .+++..|+||+|+.++|+||||||||+|||||||+|+..+++.++                                   
T Consensus        97 ~~ee~~lkSe~L~~d~RkfY~DLKEN~RGRFLRI~qt~~rg~~~~-----------------------------------  141 (263)
T KOG3074|consen   97 PSEEHELKSEELQRDNRKFYLDLKENQRGRFLRISQTPMRGRQTR-----------------------------------  141 (263)
T ss_pred             chhhhhHHHHHHhhcCceEEEEcccccccceEEeeecccCCCCcc-----------------------------------
Confidence            566789999999999999999999999999999999977654211                                   


Q ss_pred             cccccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEee
Q psy10506        266 VPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE  345 (435)
Q Consensus       266 ~p~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISE  345 (435)
                                  .+.++||+|||||+||||||++|+++||.++.  -.++|++..|+||||+||||+|+|+||.||||||
T Consensus       142 ------------~Q~~tIalPaqG~aEfrdaLaelle~~G~~~~--gqelpeg~~~tvDnk~F~Fd~G~N~~G~f~riSE  207 (263)
T KOG3074|consen  142 ------------TQVQTIALPAQGIAEFRDALAELLEDFGEGDE--GQELPEGTSITVDNKRFLFDVGKNKRGVFVRISE  207 (263)
T ss_pred             ------------ccccceeccchhHHHHHHHHHHHHHHhCCccc--cCCCCCCCeEEEecceeEEecCCCCccceEEEEE
Confidence                        12345788899999999999999999998775  4889999999999999999999999999999999


Q ss_pred             eecccCCCCCCceEEechhhHHHHHHHHHHHHHHhcccCC
Q psy10506        346 VSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDG  385 (435)
Q Consensus       346 v~qt~~rg~~RssItIPaqg~~eFrdaL~~~ide~~~~d~  385 (435)
                      |+   +.+++|++||||.++|.+|+++|++|+++|+...+
T Consensus       208 Vk---~n~~yRnsITvP~k~w~~F~~~f~~y~e~mk~~~e  244 (263)
T KOG3074|consen  208 VK---SNGSYRNSITVPFKAWKRFGEVFGKYSEEMKKISE  244 (263)
T ss_pred             ec---CCCCcccceeeehhHhhhhhhHHHHHHHHHHHhhh
Confidence            99   45699999999999999999999999999998754

>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution

Probab=100.00  E-value=9.1e-61  Score=450.87  Aligned_cols=195  Identities=45%  Similarity=0.837  Sum_probs=116.6

Q ss_pred             CCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecccccc
Q psy10506        190 GKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQ  269 (435)
Q Consensus       190 ~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p~q  269 (435)
                      ++||||+|++|+||||||||||.||||+||+|++ ++|+||+|+++++.+++|+++|++|+|+|++         |.|.-
T Consensus         2 ~eLask~l~iq~KrfYlDVkqN~RGrfiKiaE~~-~~g~ksri~lsm~~A~efrd~L~~f~~~ya~---------l~p~n   71 (218)
T PF04845_consen    2 QELASKMLQIQNKRFYLDVKQNRRGRFIKIAEVG-AGGRKSRITLSMSAAAEFRDHLGDFIEFYAQ---------LGPSN   71 (218)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--TT--EEEEEEEHHHHHHHHHHHHHHHHHHHC---------S-S--
T ss_pred             chhhhhheEecceEEEEEecccCcceeEEEeecc-CCCCcceEEEechhHHHHHHHHHHHHHHHhc---------cCCCC
Confidence            6899999999999999999999999999999985 6889999999999999999999999999984         32321


Q ss_pred             cccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeeecc
Q psy10506        270 VSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQT  349 (435)
Q Consensus       270 ~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~qt  349 (435)
                      +.+                                ..+++   ...-.+++|.+|+|+||||||||+||+||||||.   
T Consensus        72 ~~~--------------------------------~~~~~---~~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~---  113 (218)
T PF04845_consen   72 PEN--------------------------------LPDEG---RSELKSEKINVENRRYYLDLKENSRGRFLRISQT---  113 (218)
T ss_dssp             SS-----------------------------------TT------ECEEEEEEETTEEEEEEEEEETTEEEEEEEEE---
T ss_pred             ccc--------------------------------ccccc---cceeeehheeeccceEEEEcccccCcceEEEEEe---
Confidence            100                                00111   1133567999999999999999999999999954   


Q ss_pred             cCCC--CCCceEEechhhHHHHHHHHHHHHHHhcccC-CCCCCCCCCCceeEEecceEEEecCCCCceeEEEEeEE----
Q psy10506        350 IPRG--GPRSQIAIPAQGMIEFRDALTDLLEEFGTED-GGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEH----  422 (435)
Q Consensus       350 ~~rg--~~RssItIPaqg~~eFrdaL~~~ide~~~~d-~g~~~elpe~~~lrv~nK~FyFDvg~N~rG~flrIsEv----  422 (435)
                      .+||  +.|++|+|||+||++|++||++++|++++.+ +..+.+||++++|+||||+||||+|+|+||+|||||||    
T Consensus       114 ~~~~~~~~R~qIaiPa~G~~ef~~al~~lid~~g~~~~~~~~~~Lpes~~lrvdnK~FyFD~g~N~rG~fLrISEv~~~~  193 (218)
T PF04845_consen  114 VSRGPRGRRSQIAIPAQGMIEFRDALTDLIDEFGEDDEEDEQGELPESKSLRVDNKRFYFDVGSNRRGVFLRISEVKSNF  193 (218)
T ss_dssp             ETTT----EEEEEEEGGGHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             eccCCCCCccEEEEehHHHHHHHHHHHHHHHHhcCcccccccccCCCCcEEEECCeEEEEECCCCCCeeEEEecccCCCC
Confidence            4666  8899999999999999999999999999987 44678999999999999999999999999999999999    


Q ss_pred             --EEeecccccc
Q psy10506        423 --YYIIPFDSLV  432 (435)
Q Consensus       423 --~~~~~~~~~~  432 (435)
                        .||||.++++
T Consensus       194 Rs~ItIP~~~w~  205 (218)
T PF04845_consen  194 RSAITIPESAWS  205 (218)
T ss_dssp             ------------
T ss_pred             CceeeCCHHHHH
Confidence              5889987764

Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.

>KOG3074|consensus

Probab=100.00  E-value=3.7e-58  Score=437.26  Aligned_cols=194  Identities=43%  Similarity=0.817  Sum_probs=165.9

Q ss_pred             CCCCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceeccc
Q psy10506        187 PDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLV  266 (435)
Q Consensus       187 p~~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~  266 (435)
                      .++++|+||+|++|+||||||||||+|||||||||+.. + .||+|++|++++++|+++|++|+++|+.         |.
T Consensus        20 ~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~-~-~~Sri~ls~s~aaef~d~l~~f~~~ya~---------lg   88 (263)
T KOG3074|consen   20 GEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGA-G-GRSRIILSLSVAAEFRDILNDFIEHYAQ---------LG   88 (263)
T ss_pred             chhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEecc-C-CcceEEEehhhHHHHHHHHHHHHHHHHh---------cC
Confidence            35679999999999999999999999999999999853 3 4599999999999999999999999984         22


Q ss_pred             ccccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeee
Q psy10506        267 PHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEV  346 (435)
Q Consensus       267 p~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv  346 (435)
                      |.           +++.+.|+                   +++.+     .++.|..|||+||||||||+|||||||+  
T Consensus        89 ~~-----------~~~~~~~~-------------------ee~~l-----kSe~L~~d~RkfY~DLKEN~RGRFLRI~--  131 (263)
T KOG3074|consen   89 PP-----------PPELAAPS-------------------EEHEL-----KSEELQRDNRKFYLDLKENQRGRFLRIS--  131 (263)
T ss_pred             CC-----------Ccccccch-------------------hhhhH-----HHHHHhhcCceEEEEcccccccceEEee--
Confidence            21           01111111                   22222     3457899999999999999999999998  


Q ss_pred             ecccCCCC-CCce---EEechhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCceeEEecceEEEecCCCCceeEEEEeEE
Q psy10506        347 SQTIPRGG-PRSQ---IAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEH  422 (435)
Q Consensus       347 ~qt~~rg~-~Rss---ItIPaqg~~eFrdaL~~~ide~~~~d~g~~~elpe~~~lrv~nK~FyFDvg~N~rG~flrIsEv  422 (435)
                       ||.+|++ .|++   |+||++||++|||+|.+|++++++.+++  ++||++++++||||+||||+|+|+||+|||||||
T Consensus       132 -qt~~rg~~~~~Q~~tIalPaqG~aEfrdaLaelle~~G~~~~g--qelpeg~~~tvDnk~F~Fd~G~N~~G~f~riSEV  208 (263)
T KOG3074|consen  132 -QTPMRGRQTRTQVQTIALPAQGIAEFRDALAELLEDFGEGDEG--QELPEGTSITVDNKRFLFDVGKNKRGVFVRISEV  208 (263)
T ss_pred             -ecccCCCCccccccceeccchhHHHHHHHHHHHHHHhCCcccc--CCCCCCCeEEEecceeEEecCCCCccceEEEEEe
Confidence             7778887 7888   9999999999999999999999998873  8999999999999999999999999999999999


Q ss_pred             E--------Eeeccccc
Q psy10506        423 Y--------YIIPFDSL  431 (435)
Q Consensus       423 ~--------~~~~~~~~  431 (435)
                      +        ||+||+-+
T Consensus       209 k~n~~yRnsITvP~k~w  225 (263)
T KOG3074|consen  209 KSNGSYRNSITVPFKAW  225 (263)
T ss_pred             cCCCCcccceeeehhHh
Confidence            5        58888765

>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

Probab=99.86  E-value=6.1e-22  Score=156.48  Aligned_cols=63  Identities=46%  Similarity=0.789  Sum_probs=60.3

Q ss_pred             hhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhh
Q psy10506        114 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYA  176 (435)
Q Consensus       114 eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya  176 (435)
                      ||+||+|++|+|+||||||+|+|||||||||++.++.||+|+||++++.+|++.|.+++++|.
T Consensus         1 el~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~~~~~r~~I~lp~~~~~~F~~~l~~~~~~~~   63 (63)
T smart00712        1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALNKLIEKYG   63 (63)
T ss_pred             CCcccEEEeCCcEEEEEecccCCccEEEEEEecCCCCceEEEEEHHHHHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999777799999999999999999999999983

>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

Probab=99.85  E-value=2.7e-21  Score=152.83  Aligned_cols=61  Identities=49%  Similarity=0.910  Sum_probs=57.1

Q ss_pred             CCcceeEEecceEEEEcCCCCccceEEEeeeecccCCCCC-CceEEechhhHHHHHHHHHHHHHHhc
Q psy10506        316 PEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGP-RSQIAIPAQGMIEFRDALTDLLEEFG  381 (435)
Q Consensus       316 p~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~qt~~rg~~-RssItIPaqg~~eFrdaL~~~ide~~  381 (435)
                      +.|++|+++||+||||||+|+||+||||||++     ++. |++|+||+++|++|+++|++++|.|+
T Consensus         2 l~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~-----~~~~r~~I~lp~~~~~~F~~~l~~~~~~~~   63 (63)
T smart00712        2 LASKKLTVENKRFYFDVKENRRGRFLRISEVK-----NNGGRSSITVPEQGAAEFRDALNKLIEKYG   63 (63)
T ss_pred             CcccEEEeCCcEEEEEecccCCccEEEEEEec-----CCCCceEEEEEHHHHHHHHHHHHHHHHhhC
Confidence            46789999999999999999999999999999     455 99999999999999999999999885

>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function

Probab=97.62  E-value=0.00013  Score=65.46  Aligned_cols=69  Identities=25%  Similarity=0.530  Sum_probs=55.3

Q ss_pred             CCCCccceeeeeccceEEEecccCCccc-eeEEEeee--cCC-C----CccEEEEecccHHHHHHHHHHHHHhhccC
Q psy10506        188 DDGKLKSEVMVKDNRRYYLDLKENTRGR-FLRVSQTI--PRG-G----PRSQIAIPAQGMIEFRDALTDLLEEFGTE  256 (435)
Q Consensus       188 ~~~~L~Se~i~~e~KrFYlDLKeN~RGR-FLRISE~~--~rg-g----~RS~IiIPa~g~~eFr~~L~~~ie~~~~~  256 (435)
                      +.++|.|+.|.++++.||||||+|..|- ||-|+|.-  ..+ |    .|..|.|-.+-+..|.+.|.++++.+..+
T Consensus         8 ~r~eifSk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~i~~i~~~   84 (124)
T PF11680_consen    8 DREEIFSKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEAIDFIKKE   84 (124)
T ss_dssp             -TTEEEEEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999995 89999963  222 2    58999999999999999999999988643

; PDB: 3NM7_C 3N8B_A.

>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function

Probab=96.90  E-value=0.0015  Score=58.73  Aligned_cols=66  Identities=17%  Similarity=0.473  Sum_probs=51.6

Q ss_pred             cceeEEecceEEEEcCCCCcc-ceEEEeeeecccCCCC----CCceEEechhhHHHHHHHHHHHHHHhccc
Q psy10506        318 GRHMRVENKNFYFDIGQNNRG-IYMRVSEVSQTIPRGG----PRSQIAIPAQGMIEFRDALTDLLEEFGTE  383 (435)
Q Consensus       318 s~~IrvdnKrFyFDLgeN~RG-rFLRISEv~qt~~rg~----~RssItIPaqg~~eFrdaL~~~ide~~~~  383 (435)
                      |+.+++++++||||+++|..| -||-|+|-+-...-.+    .|..|.|=..=+.+|.++|.+.++-....
T Consensus        14 Sk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~i~~i~~~   84 (124)
T PF11680_consen   14 SKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEAIDFIKKE   84 (124)
T ss_dssp             EEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999998 5899999884332222    58899999999999999999998876654

; PDB: 3NM7_C 3N8B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
3k44_A	146	Crystal Structure Of Drosophila Melanogaster Pur-Al		1e-68
3k44_A	146	Crystal Structure Of Drosophila Melanogaster Pur-Al		2e-22
3k44_A	146	Crystal Structure Of Drosophila Melanogaster Pur-Al		5e-09

>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha Length = 146

Iteration: 1
 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 132/141 (93%)
Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
           LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+FSDY
Sbjct: 5   LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDY 64
Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
           YASLGPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLRVSQTI RGGPRSQIA+
Sbjct: 65  YASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIAL 124
Query: 235 PAQGMIEFRDALTDLLEEFGT 255
           PAQGMIEFRDALTDLLEEFG 
Sbjct: 125 PAQGMIEFRDALTDLLEEFGA 145

>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha Length = 146

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 28/143 (19%)
Query: 191 KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLL 250
           +L ++++   ++R+YLD+K+N RGRF++V++ I   G RSQI +      EFRD L+   
Sbjct: 4   ELATKMLQIQSKRFYLDVKQNRRGRFIKVAE-IGADGRRSQIYLALSTAAEFRDHLSSFS 62
Query: 251 EEFGT----------EDGGYKVLSLVPH-----------------QVSQTIPRGGPRSQI 283
           + + +          EDG  K   ++                   +VSQTI RGGPRSQI
Sbjct: 63  DYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQI 122
Query: 284 AIPAQGMIEFRDALTDLLEEFGT 306
           A+PAQGMIEFRDALTDLLEEFG 
Sbjct: 123 ALPAQGMIEFRDALTDLLEEFGA 145

>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha Length = 146

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 19/113 (16%)
Query: 319 RHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLE 378
           + +++++K FY D+ QN RG +++V+E+       G RSQI +      EFRD L+   +
Sbjct: 8   KMLQIQSKRFYLDVKQNRRGRFIKVAEIGAD----GRRSQIYLALSTAAEFRDHLSSFSD 63
Query: 379 EFGT----------EDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 421
            + +          EDG  K E+     M  + + +Y D+ +N RG ++RVS+
Sbjct: 64  YYASLGPPNTDNLPEDGKLKSEM-----MIKDYRRYYLDLKENARGRFLRVSQ 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	4e-66
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	1e-33
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	8e-21
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	1e-16
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} Length = 146

 Score =  207 bits (527), Expect = 4e-66
 Identities = 126/145 (86%), Positives = 135/145 (93%)

Query: 112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAF 171
           EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+F
Sbjct: 2   EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF 61

Query: 172 SDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQ 231
           SDYYASLGPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLRVSQTI RGGPRSQ
Sbjct: 62  SDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQ 121

Query: 232 IAIPAQGMIEFRDALTDLLEEFGTE 256
           IA+PAQGMIEFRDALTDLLEEFG  
Sbjct: 122 IALPAQGMIEFRDALTDLLEEFGAN 146

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} Length = 146

 Score =  122 bits (307), Expect = 1e-33
 Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 50/195 (25%)

Query: 189 DGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTD 248
           + +L ++++   ++R+YLD+K+N RGRF++V++ I   G RSQI +      EFRD L+ 
Sbjct: 2   EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE-IGADGRRSQIYLALSTAAEFRDHLSS 60

Query: 249 LLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTED 308
             + +                        GP +   +P  G ++                
Sbjct: 61  FSDYYA---------------------SLGPPNTDNLPEDGKLKSEM------------- 86

Query: 309 GGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIE 368
                       M  + + +Y D+ +N RG ++RVS+   TI RGGPRSQIA+PAQGMIE
Sbjct: 87  ------------MIKDYRRYYLDLKENARGRFLRVSQ---TITRGGPRSQIALPAQGMIE 131

Query: 369 FRDALTDLLEEFGTE 383
           FRDALTDLLEEFG  
Sbjct: 132 FRDALTDLLEEFGAN 146

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} Length = 146

 Score = 87.4 bits (216), Expect = 8e-21
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 319 RHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLE 378
           + +++++K FY D+ QN RG +++V+E+       G RSQI +      EFRD L+   +
Sbjct: 8   KMLQIQSKRFYLDVKQNRRGRFIKVAEIG----ADGRRSQIYLALSTAAEFRDHLSSFSD 63

Query: 379 EFGTEDGGYKGELPE-----GRHMRVENKNFYFDIGQNNRGIYMRVSE 421
            + +        LPE        M  + + +Y D+ +N RG ++RVS+
Sbjct: 64  YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ 111

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} Length = 146

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 20/162 (12%)

Query: 16  DGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQQQEQELATKMLQ 75
           + +L ++++   ++R+YLD+K+N RGRF++        + E    G++ Q   +   +  
Sbjct: 2   EQELATKMLQIQSKRFYLDVKQNRRGRFIK--------VAEIGADGRRSQ---IYLALST 50

Query: 76  IQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNR 135
               R +L    +        N   +         ++ +L ++M+    +R+YLD+K+N 
Sbjct: 51  AAEFRDHLSSFSDYYASLGPPNTDNLP--------EDGKLKSEMMIKDYRRYYLDLKENA 102

Query: 136 RGRFIKVAE-VGADGRRSQIFLALSVAEQFRGHLSAFSDYYA 176
           RGRF++V++ +   G RSQI L      +FR  L+   + + 
Sbjct: 103 RGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFG 144

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} Length = 146

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 5   YGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLR 45
            GPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLR
Sbjct: 68  LGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLR 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 85/240 (35%)

Query: 27  DNRRYYLDLKENTRGRFLRTADVN----LLIIY--EQDKQGQQQQEQELATK-MLQIQSK 79
           + R+ +  L       F      +    LL +   +  K        +L    +++ Q K
Sbjct: 370 EYRKMFDRL-----SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 80  RF-------YLDVKQNRRG------RFIKVNNIPIAICLN-------------------- 106
                    YL++K             +   NIP     +                    
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 107 -CQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFI--KVAEVG-ADGRRSQIFLALSVAE 162
             +  +   L   +        +LD       RF+  K+     A      I   L   +
Sbjct: 483 NIEHPERMTLFRMV--------FLDF------RFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 163 QFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENT-RGRFLRVSQ 221
            ++ ++      Y                   E +V     +   ++EN    ++  + +
Sbjct: 529 FYKPYICDNDPKY-------------------ERLVNAILDFLPKIEENLICSKYTDLLR 569

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	100.0
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	100.0
3n8b_A	98	Uncharacterized protein; PUR-alpha, PUR repeat, PU	98.25
3n8b_A	98	Uncharacterized protein; PUR-alpha, PUR repeat, PU	97.93
3nm7_A	127	Uncharacterized protein; PUR-alpha, PUR repeat, PU	97.07
3nm7_A	127	Uncharacterized protein; PUR-alpha, PUR repeat, PU	96.17

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-52  Score=375.99  Aligned_cols=145  Identities=87%  Similarity=1.314  Sum_probs=140.5

Q ss_pred             hhhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCC
Q psy10506        111 QEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDG  190 (435)
Q Consensus       111 ~e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~~lp~~~  190 (435)
                      +||||+||+|++|+|+||||||||.|||||||||++++|+||+|+||++++.||||+|++|+|+|+++++++++.+|+++
T Consensus         1 ~~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~   80 (146)
T 3k44_A            1 VEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG   80 (146)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred             CcccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhcc
Q psy10506        191 KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGT  255 (435)
Q Consensus       191 ~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~  255 (435)
                      .|+|++|.+++|+||||||+|+|||||||||+.++|+.|++|+||++||.+||++|++++++|++
T Consensus        81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~  145 (146)
T 3k44_A           81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGA  145 (146)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred             cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998778899999999999999999999999999973

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=5.5e-48  Score=345.67  Aligned_cols=144  Identities=45%  Similarity=0.810  Sum_probs=122.4

Q ss_pred             CCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceeccccc
Q psy10506        189 DGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPH  268 (435)
Q Consensus       189 ~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p~  268 (435)
                      +++|+||+|++|+||||||||||+|||||||||++ ++|+||+|+||++||.+|+++|++|+|+|+..+         |.
T Consensus         2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~-~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g---------~~   71 (146)
T 3k44_A            2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIG-ADGRRSQIYLALSTAAEFRDHLSSFSDYYASLG---------PP   71 (146)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEC-TTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSC---------SC
T ss_pred             cccccceeEEEeceEEEEEecccCCeEEEEEEEec-CCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcC---------CC
Confidence            57899999999999999999999999999999984 678999999999999999999999999997421         11


Q ss_pred             ccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeeec
Q psy10506        269 QVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQ  348 (435)
Q Consensus       269 q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~q  348 (435)
                                  .+..+|.                    ++    .| .+++|++|||+||||||+|+||+||||||+. 
T Consensus        72 ------------~~~~~~~--------------------~~----~l-~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~-  113 (146)
T 3k44_A           72 ------------NTDNLPE--------------------DG----KL-KSEMMIKDYRRYYLDLKENARGRFLRVSQTI-  113 (146)
T ss_dssp             ------------CSSCCCT--------------------TC----EE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-
T ss_pred             ------------ccccCCc--------------------cc----cc-cchheeccCceEEEEecccCcceEEEEEEee-
Confidence                        1101111                    11    11 2468999999999999999999999999885 


Q ss_pred             ccCCCCCCceEEechhhHHHHHHHHHHHHHHhcc
Q psy10506        349 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGT  382 (435)
Q Consensus       349 t~~rg~~RssItIPaqg~~eFrdaL~~~ide~~~  382 (435)
                        .||++|++||||++||++|||+|++|+|+|++
T Consensus       114 --~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~  145 (146)
T 3k44_A          114 --TRGGPRSQIALPAQGMIEFRDALTDLLEEFGA  145 (146)
T ss_dssp             --SSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred             --ccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence              45889999999999999999999999999975

>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}

Probab=98.25  E-value=1.5e-06  Score=73.56  Aligned_cols=68  Identities=29%  Similarity=0.553  Sum_probs=57.4

Q ss_pred             CCccceeee-eccceEEEecccCCccc-eeEEEeee--cCCC-CccEEEEecccHHHHHHHHHHHHHhhccCC
Q psy10506        190 GKLKSEVMV-KDNRRYYLDLKENTRGR-FLRVSQTI--PRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED  257 (435)
Q Consensus       190 ~~L~Se~i~-~e~KrFYlDLKeN~RGR-FLRISE~~--~rgg-~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~  257 (435)
                      ++|.|+.+. ..++.||||||+|..|. ||.|+|..  ..|+ .|..|.|+.+-+..|.+.|.++++.+..+.
T Consensus         3 gEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~~   75 (98)
T 3n8b_A            3 GEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQKV   75 (98)
T ss_dssp             TEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence            678897665 45899999999999999 99999962  2344 599999999999999999999999887643

>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}

Probab=97.93  E-value=6.6e-06  Score=69.67  Aligned_cols=66  Identities=15%  Similarity=0.375  Sum_probs=56.4

Q ss_pred             cceeEEecceEEEEcCCCCccc-eEEEeeeecccCCCC-CCceEEechhhHHHHHHHHHHHHHHhcccC
Q psy10506        318 GRHMRVENKNFYFDIGQNNRGI-YMRVSEVSQTIPRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED  384 (435)
Q Consensus       318 s~~IrvdnKrFyFDLgeN~RGr-FLRISEv~qt~~rg~-~RssItIPaqg~~eFrdaL~~~ide~~~~d  384 (435)
                      .+++++..++||||+++|..|. ||-|+|-+-... |. .|..|.|+..-+..|.++|.+.++-.....
T Consensus         8 ~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~-G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~~   75 (98)
T 3n8b_A            8 EKMFTESERTYFMNVKENRKGDYFLNIVESKRSPS-GDFERHSIFVYEENMNEFESNLLKAIAVIKQKV   75 (98)
T ss_dssp             EEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTT-SCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCeEEEEEeecccCCCeEEEEEeecccCC-CCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence            3566778999999999999999 999999974322 55 589999999999999999999999887653

>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}

Probab=97.07  E-value=0.0012  Score=58.07  Aligned_cols=70  Identities=26%  Similarity=0.529  Sum_probs=57.2

Q ss_pred             CCCCccceeee-eccceEEEecccCCccc-eeEEEeee--cCCC-CccEEEEecccHHHHHHHHHHHHHhhccCC
Q psy10506        188 DDGKLKSEVMV-KDNRRYYLDLKENTRGR-FLRVSQTI--PRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED  257 (435)
Q Consensus       188 ~~~~L~Se~i~-~e~KrFYlDLKeN~RGR-FLRISE~~--~rgg-~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~  257 (435)
                      +.++|.|+.+. ...+.||||||+|..|- ||-|+|.-  ..|+ .|..|.|-.+-+..|.+.|.++++.+..+-
T Consensus         8 ~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~~   82 (127)
T 3nm7_A            8 ERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKV   82 (127)
T ss_dssp             CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHS
T ss_pred             chhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence            45789997775 56899999999999995 89999963  2233 499999999999999999999988887543

>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}

Probab=96.17  E-value=0.0036  Score=55.07  Aligned_cols=64  Identities=16%  Similarity=0.438  Sum_probs=53.4

Q ss_pred             ceeEEecceEEEEcCCCCcc-ceEEEeeeecccCCCC-CCceEEechhhHHHHHHHHHHHHHHhccc
Q psy10506        319 RHMRVENKNFYFDIGQNNRG-IYMRVSEVSQTIPRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTE  383 (435)
Q Consensus       319 ~~IrvdnKrFyFDLgeN~RG-rFLRISEv~qt~~rg~-~RssItIPaqg~~eFrdaL~~~ide~~~~  383 (435)
                      +++.+..++||||+++|..| -||-|+|-+-... |. .|..|.|=..-+..|.++|.+.++-....
T Consensus        16 kv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~-G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~   81 (127)
T 3nm7_A           16 KLFTESERTYFFNVKENRKGDYFLNIVESKRSPS-GDFERHSIFVYEENINEFESNLLKAIAVIKQK   81 (127)
T ss_dssp             EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTT-SCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCCCeeEEEEeecccCCCeEEEEEeecccCC-CCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHh
Confidence            45567899999999999997 5899999884333 44 58899999999999999999998877655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00