Psyllid ID: psy10663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
Protein Sequence
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTTVEKTSVISED
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccccccccccHHHHHHHHcccccccccccEEcccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHccccccccccccccEEEccccccccccccccccHHHHcccccccccEEEcccEEEEEEEEccccEEEEEEEEEcccEEEEEEEccEEEEEccccHHHHHHHHcccccHHHHHHcccccEEcccccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccEEEccccccccccccccccccccHHHHHHHcccccccccEEEEEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccEEEEEEcccccccEEEccHHHHccccccccccEEEccccccHHHHccccEEEcccccEEcccHHHHHEEEEcccHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHHcEccHHHHHHHcccccEccccccHHHHHHHHEEEEEEEcccccccHcHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHcccccccccccccccccccHHHHHHHccccccccEEEEEEccccccccEEEEEEcccccccccEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEEccccEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccccEEccccccccc
Coil and Loop (DISEMBL)
CLTAKLLAQSGCSVLIleagpdapistaipamwhesiqdskldwgfvlesnpsyglglkdNVVRLNQARVLGgssiindmihdrgsqydyerweglnmtgwtysdMDAIYTRIertkldtvrtetesetvtvdndgtVTITTIKTEKINLLRSTFSKAfedigfkspdtftvsdhvgiappmyylkdgQRMIASSIFLRAIkdkntvqvsknsevtklcfdetktkvtgvefrnpqgktikvnaNREVVLAANSINSVRILQQsgvgdaallskyniplvknlpgvgkrlslhpmffglsytftktpvssyTINEIIYEYLTQrtgrftdigmsnfigyldtdfkgnpdvavtqyyfpaqdtlfLRGHLKAWNVNDDLVERFVkvnadkpiLIIGLVSlcpkaegvveinsndptknptiryplyteeEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLStttnhptgtlrmgppsdplavvgpdfrvngfsnlrvvgepvipvemVTDSSAVALMLAERCATfiqspvnvtTVTKTTVEKTSVISED
Flexible Loop (DISEMBL)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGgssiindmihdrgSQYDYERWEGLNMTGWTYSDMDAIYTRIErtkldtvrtetesetvtvdndgtvtittiktekinllRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKdkntvqvsknsevtklcfdetktkvtgvefrnpqgktikvnanrEVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGvveinsndptknptiryplyteeedIKNILTAVKMVDRVMKYRDFknfqtnsvqLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCAtfiqspvnvttvtkttvektsvised
Low Complexity Region (SEG)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDtvrtetesetvtvDNDGtvtittiktekiNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPvnvttvtkttvektsvISED
Disordered region (IsUnstruct)
*****LLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHP***********PLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTT**********
Disordered Region (DISOPRED)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNV*****************
Disordered Region (DISEMBL)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL***********VTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTTVEKTSVISED
Disordered Region (DISPRO)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTTVEK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTTVEKTSVISED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	572	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.896	0.820	0.291	2e-56
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.896	0.820	0.282	2e-54
A7MFA8	559	Choline dehydrogenase OS=	yes	N/A	0.874	0.894	0.269	9e-41
Q8NE62	594	Choline dehydrogenase, mi	yes	N/A	0.882	0.850	0.242	1e-39
C3MIE4	549	Choline dehydrogenase OS=	yes	N/A	0.872	0.908	0.267	1e-39
A6U6Y8	549	Choline dehydrogenase OS=	yes	N/A	0.875	0.912	0.261	2e-39
P17444	556	Choline dehydrogenase OS=	N/A	N/A	0.872	0.897	0.265	3e-39
B1J0W6	556	Choline dehydrogenase OS=	yes	N/A	0.872	0.897	0.265	3e-39
B1XE52	556	Choline dehydrogenase OS=	yes	N/A	0.872	0.897	0.265	3e-39
B6I074	556	Choline dehydrogenase OS=	yes	N/A	0.872	0.897	0.265	3e-39

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/539 (29%), Positives = 254/539 (47%), Gaps = 26/539 (4%)

Query: 14  VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
           VL++EAG D P+   IP+M+   I  S +D+ +  E  P   L   +      + +VLGG
Sbjct: 91  VLLIEAGGDEPVGAQIPSMFLNFI-GSDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGG 149

Query: 74  SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIE-RTKLDTVRTETESETVTV 132
           +S++N M++ RG++ DY+ W      GW Y+D+   + + E    LD V TE  ++    
Sbjct: 150 TSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAK---- 205

Query: 133 DNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMI 192
              G + +          L     KA E++GF   D     +  G        ++G R  
Sbjct: 206 --GGLLPVGKFPYNPP--LSYAILKAGEELGFSVHD-LNGQNSTGFMIAQMTARNGIRYS 260

Query: 193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
           ++  FLR  + +N + +  N+  TK+        V GVE  +  G T K+   +EVVL+A
Sbjct: 261 SARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSA 320

Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYT 312
            ++NS  IL  SGVG    L + N+  V NLPGVGK L  H  +F     F      +  
Sbjct: 321 GAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYF---TNFFIDDADTAP 377

Query: 313 IN-EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKA 371
           +N     EYL  R G  +  G+S+    L T +  +P+    Q YF      +L    + 
Sbjct: 378 LNWATAMEYLLFRDGLMSGTGISDVTAKLATRYADSPERPDLQLYFGG----YLASCART 433

Query: 372 WNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDI 431
             V + L       N  + I I   V L P++ G + + S DP + P I     T E+D+
Sbjct: 434 GQVGELLS------NNSRSIQIFPAV-LNPRSRGFIGLRSADPLEPPRIVANYLTHEQDV 486

Query: 432 KNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPT 491
           K ++  +K V R+ +    K +     +  +K C    + S+ Y+ CA++  +   NH  
Sbjct: 487 KTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQA 546

Query: 492 GTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550
           G+ +MGP  DP+AVV  + RV+G   LRV+   ++P     ++ A A+M+AE+ A  ++
Sbjct: 547 GSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLK 605

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/539 (28%), Positives = 252/539 (46%), Gaps = 26/539 (4%)

Query: 14  VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
           VL++EAG D P+   IP+M+   I  S +D+ +  E      L   +      + +VLGG
Sbjct: 91  VLLIEAGGDEPVGAQIPSMFLNFI-GSDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGG 149

Query: 74  SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIE-RTKLDTVRTETESETVTV 132
           +S++N M++ RG++ DY+ W      GW+Y D+   + + E   +LD V TE  ++    
Sbjct: 150 TSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHAK---- 205

Query: 133 DNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMI 192
              G + +          L     KA E++GF   D     +  G        ++G R  
Sbjct: 206 --GGLLPVGKFPYNPP--LSYALLKAGEEMGFSVQD-LNGQNSTGFMIAQMTARNGIRYS 260

Query: 193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
           ++  FLR  + +N + +  N+ VTK+        V GVE  +  G   K+   +EV+++ 
Sbjct: 261 SARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSG 320

Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYT 312
            ++NS +IL  SGVG    L K N+  V +LPGVGK L  H  +F     F      +  
Sbjct: 321 GAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYF---TNFFIDDADTAP 377

Query: 313 IN-EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKA 371
           +N     EYL  R G  +  G+S+    + T +   P++   Q YF      +L    + 
Sbjct: 378 LNWATAMEYLLFRDGLMSGTGISDVTAKMATRWADRPNLPDLQLYFGG----YLASCART 433

Query: 372 WNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDI 431
             V + L       N  + I I   V L PK+ G + + S DP   P I     T+E D+
Sbjct: 434 GQVGELLS------NNSRAIQIFPAV-LNPKSRGYITLRSADPLDPPRIFANYLTDERDV 486

Query: 432 KNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPT 491
           K ++  +K   R+ +    K +     +  +K C    + S+ Y+ CA++  +   NH  
Sbjct: 487 KTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQA 546

Query: 492 GTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550
           G+ +MGP  DP+AVV  + RV+G   LRV+   ++P     ++ A A+M+AE+ A  ++
Sbjct: 547 GSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLK 605

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=betA PE=3 SV=1

 Score =  168 bits (426), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 153/567 (26%), Positives = 253/567 (44%), Gaps = 67/567 (11%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L   S  +VL+LEAG PD      T +PA     +Q  + +W +  E  P     +
Sbjct: 17  LATRLTEDSDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYETEPEPY----M 72

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
            +  +   + + LGGSS+IN M + RG+  D + W +   +  WTY D    Y + E   
Sbjct: 73  NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQQPGLERWTYLDCLPYYRKSE--- 129

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                T           DG V+ITT K    N L +   +A    G+   D        G
Sbjct: 130 -----TRDIGANDYHGGDGPVSITTCKPGN-NPLFAAMIEAGVQAGYPRTDDLNGYQQEG 183

Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
             P   +    G+R   +  +L   K +  +++  ++   ++ F+    +  GV + +  
Sbjct: 184 FGPMDRFVTPKGRRSSTARGYLDTAKQRPNLKIITHATTDRILFE--NKRAVGVAYLHGA 241

Query: 237 GKTIK-VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
             T + V+A REV+L A +I S +ILQ+SGVG+A LL +++IP+V +LPGVG+ L  H  
Sbjct: 242 SNTPQEVHARREVLLCAGAIASPQILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHLE 301

Query: 296 FFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
            + L Y   K PVS Y         +I  E+L   TG    IG SN        F+G   
Sbjct: 302 MY-LQYE-CKEPVSLYPALKWWNQPKIGAEWLFNGTG----IGASNH-------FEGGGF 348

Query: 350 VAVTQYYFPAQDTLFLRGHLKAW-NVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
           +   + +              AW N+    +   +  N    +   G      S+   + 
Sbjct: 349 IRSREEF--------------AWPNIQYHFLPVAINYNGSNAVEAHGFQCHVGSMRSPSR 394

Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
           G V I S DP ++P I +   + E+D +    A+++  +++       F+   +   I +
Sbjct: 395 GHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREISPGI-D 453

Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
           C     Q++E     ++  + T  HP GT +MG  SD +AVV  + RV+G   LRVV   
Sbjct: 454 C-----QTDEQLDEFVRNHAETAYHPCGTCKMG--SDEMAVVDDEGRVHGLEGLRVVDAS 506

Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
           ++P+ +  + +A  +M+ E+ A  I+ 
Sbjct: 507 IMPLIITGNLNATTIMIGEKIADNIRG 533

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 251/564 (44%), Gaps = 59/564 (10%)

Query: 2   LTAKLLAQSGCSVLILEAGPDAPISTA--------IPAMWHESIQDSKLDWGFVLESNPS 53
           L  +L       VL+LEAGP   ++ +        +PA    ++ D + +W +  E    
Sbjct: 55  LAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQ-- 112

Query: 54  YGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRI 113
              GL   V+   + RV GGSS +N M++ RG   DYERW+     GW Y+     + + 
Sbjct: 113 --RGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKA 170

Query: 114 ERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
           +  +L   R            DG + ++  KT   + L   F +A +  G+   +     
Sbjct: 171 QGHELGASRYRGA--------DGPLRVSRGKTN--HPLHCAFLEATQQAGYPLTEDMNGF 220

Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
              G       + +G+R  A+  +L     +  ++    + V+++ F+   T+  GVE+ 
Sbjct: 221 QQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFE--GTRAVGVEYV 278

Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
              G++ +  A++EV+L+  +INS ++L  SG+G+A  L K  IP+V +LPGVG+ L  H
Sbjct: 279 K-NGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDH 337

Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
              + +    T+ P++ ++  +      I  E+L + TG      +    G++ +   G 
Sbjct: 338 LEIY-IQQACTR-PITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETG-GFIRSQ-PGV 393

Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVV 407
           P   +  ++ P+Q                  V    +V   +    + +  +   + G +
Sbjct: 394 PHPDIQFHFLPSQ------------------VIDHGRVPTQQEAYQVHVGPMRGTSVGWL 435

Query: 408 EINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAK 467
           ++ S +P  +P I+    + E DI++    VK+   +        F+   +Q        
Sbjct: 436 KLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQ------PG 489

Query: 468 CKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIP 527
              QS++     ++  + +  HP+ T +MG PSDP AVV P  RV G  NLRVV   ++P
Sbjct: 490 SHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMP 549

Query: 528 VEMVTDSSAVALMLAERCATFIQS 551
             +  + +A  +M+AE+ A  I+ 
Sbjct: 550 SMVSGNLNAPTIMIAEKAADIIKG 573

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 244/560 (43%), Gaps = 61/560 (10%)

Query: 1   CLTAKLLAQSGCSVLILE-AGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
            L  +L   S  SV++LE  G D      +PA     +  ++ +WG++ E  P     L 
Sbjct: 16  ALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYLSEPEPH----LN 71

Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
           +  +   + +V+GGSS IN M++ RG   D++RWE L   GW Y+D+   + R+E +   
Sbjct: 72  NRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSH-- 129

Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
                   E      DG + +     +  N L   F +A +  GF+  D +  S   G  
Sbjct: 130 ------GGEDGWRGTDGPLHVQRGPVK--NPLFHAFVEAGKQAGFEMTDDYNGSKQEGFG 181

Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNP 235
                   G+R  A+S +L+    +  VQ+ +       CF         + TGVE    
Sbjct: 182 LMEQTTWRGRRWSAASAYLKPALKRPNVQLIR-------CFARKIVIENGRATGVEIER- 233

Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
            G+   V ANREV+++A+S NS ++L  SG+G AA L    I +  + PGVG+ L  H M
Sbjct: 234 GGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDH-M 292

Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRF--TDIGMSN---FIGYLDTDFK-GNPD 349
            F      TK PVS Y+     ++ +      F  + +G+SN      +L +      PD
Sbjct: 293 EFYFQQISTK-PVSLYSWLPWFWQGVAGAQWLFFKSGLGISNQFEACAFLRSAPGVKQPD 351

Query: 350 VAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEI 409
           +   QY+F     + +R   KA   N    +  V  N               K+ G V +
Sbjct: 352 I---QYHFL---PVAIRYDGKA-AANTHGFQVHVGYN-------------LSKSRGSVTL 391

Query: 410 NSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
            ++DP  +P IR+   +  ED +     V++   +   + F  ++   +Q         +
Sbjct: 392 RASDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEIQ------PGER 445

Query: 470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE 529
            Q++E     ++    +  HP GT +MG   DP+AVV P+ RV G   LRV    + P  
Sbjct: 446 VQTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHV 505

Query: 530 MVTDSSAVALMLAERCATFI 549
              + +A ++M  E+ A  I
Sbjct: 506 TYGNLNAPSIMTGEKAADHI 525

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betA PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 238/558 (42%), Gaps = 57/558 (10%)

Query: 1   CLTAKLLAQSGCSVLILE-AGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
            L  +L      SV++LE  G D      +PA     +  ++ +WG++ E  P+    L 
Sbjct: 16  ALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYLSEPEPN----LN 71

Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
           +  +   + +V+GGSS IN M++ RG   D++RWE L   GW Y+D+   Y R+E +   
Sbjct: 72  NRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSH-- 129

Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
                   E      DG + +     +  N L   F +A +  GF+  + +  S   G  
Sbjct: 130 ------GGEEGWRGTDGPLHVQRGPVK--NPLFHAFIEAGKQAGFEVTEDYNGSKQEGFG 181

Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNP 235
                   G+R  A+S +LR    +  V++ +       CF         + TGVE    
Sbjct: 182 LMEQTTWRGRRWSAASAYLRPALKRPNVELVR-------CFARKIVIENGRATGVEIER- 233

Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
            G+T  V ANREV+++A+S NS ++L  SG+G AA L +  I +  + PGVG+ L  H M
Sbjct: 234 GGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDH-M 292

Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF-KGNPDVAV-- 352
            F      TK PVS Y+     ++ +      F   G+     +    F +  P V    
Sbjct: 293 EFYFQQVSTK-PVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAPGVKQPD 351

Query: 353 TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
            QY+F P                    +    K  A      + +     K+ G V + S
Sbjct: 352 IQYHFLPV------------------AISYDGKAAAKSHGFQVHVGYNLSKSRGDVTLRS 393

Query: 412 NDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQ 471
           +DP  +P IR+   +  ED +     V++   +   + F  ++   +Q         K +
Sbjct: 394 SDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEIQ------PGEKVR 447

Query: 472 SEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMV 531
           ++E     ++    +  HP GT +MG   DP+AVV P+ RV G   LRV    + P    
Sbjct: 448 TDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITY 507

Query: 532 TDSSAVALMLAERCATFI 549
            + +A ++M  E+ A  I
Sbjct: 508 GNLNAPSIMTGEKAADHI 525

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L      SVL+LEAG PD      T +PA     +Q  + +W +  E  P     +
Sbjct: 17  LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
            +  +   + + LGGSS+IN M + RG+  D + W +   +  W+Y D    Y + E   
Sbjct: 73  NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                T    E      DG V++TT K   +N L     +A    G+   D        G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183

Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
             P        G+R   +  +L   K +  + +  ++    + FD    +  GVE+   +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239

Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
           G +    +  AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV  LPGVG+ L  H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299

Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
              + L Y   K PVS Y         +I  E+L   TG    +G SN            
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341

Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
                   +F A   +  R      N+    +   +  N    +   G      S+   +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393

Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
            G V I S DP ++P I +   + E+D +    A+++   +M       ++      EI 
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449

Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
              +C  Q++E     ++  + T  HP GT +MG   D ++VV  + RV+G   LRVV  
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505

Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
            ++P  +  + +A  +M+ E+ A  I+ 
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=betA PE=3 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L      SVL+LEAG PD      T +PA     +Q  + +W +  E  P     +
Sbjct: 17  LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
            +  +   + + LGGSS+IN M + RG+  D + W +   +  W+Y D    Y + E   
Sbjct: 73  NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                T    E      DG V++TT K   +N L     +A    G+   D        G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183

Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
             P        G+R   +  +L   K +  + +  ++    + FD    +  GVE+   +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239

Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
           G +    +  AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV  LPGVG+ L  H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299

Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
              + L Y   K PVS Y         +I  E+L   TG    +G SN            
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341

Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
                   +F A   +  R      N+    +   +  N    +   G      S+   +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393

Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
            G V I S DP ++P I +   + E+D +    A+++   +M       ++      EI 
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449

Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
              +C  Q++E     ++  + T  HP GT +MG   D ++VV  + RV+G   LRVV  
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505

Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
            ++P  +  + +A  +M+ E+ A  I+ 
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) (taxid: 481805)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=betA PE=3 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L      SVL+LEAG PD      T +PA     +Q  + +W +  E  P     +
Sbjct: 17  LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
            +  +   + + LGGSS+IN M + RG+  D + W +   +  W+Y D    Y + E   
Sbjct: 73  NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                T    E      DG V++TT K   +N L     +A    G+   D        G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183

Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
             P        G+R   +  +L   K +  + +  ++    + FD    +  GVE+   +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239

Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
           G +    +  AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV  LPGVG+ L  H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299

Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
              + L Y   K PVS Y         +I  E+L   TG    +G SN            
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341

Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
                   +F A   +  R      N+    +   +  N    +   G      S+   +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393

Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
            G V I S DP ++P I +   + E+D +    A+++   +M       ++      EI 
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449

Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
              +C  Q++E     ++  + T  HP GT +MG   D ++VV  + RV+G   LRVV  
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505

Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
            ++P  +  + +A  +M+ E+ A  I+ 
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Escherichia coli (strain K12 / DH10B) (taxid: 316385)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA PE=3 SV=1

 Score =  163 bits (413), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L      SVL+LEAG PD      T +PA     +Q  + +W +  E  P     +
Sbjct: 17  LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
            +  +   + + LGGSS+IN M + RG+  D + W +   +  W+Y D    Y + E   
Sbjct: 73  NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                T    E      DG V++TT K   +N L     +A    G+   D        G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183

Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
             P        G+R   +  +L   K +  + +  ++    + FD    +  GVE+   +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239

Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
           G +    +  AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV  LPGVG+ L  H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299

Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
              + L Y   K PVS Y         +I  E+L   TG    +G SN            
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341

Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
                   +F A   +  R      N+    +   +  N    +   G      S+   +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393

Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
            G V I S DP ++P I +   + E+D +    A+++   +M       ++      EI 
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449

Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
              +C  Q++E     ++  + T  HP GT +MG   D ++VV  + RV+G   LRVV  
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505

Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
            ++P  +  + +A  +M+ E+ A  I+ 
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Escherichia coli (strain SE11) (taxid: 409438)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
193659536	719	PREDICTED: glucose dehydrogenase [accept	0.951	0.756	0.320	3e-81
193676365	1147	PREDICTED: hypothetical protein LOC10015	0.958	0.477	0.293	6e-67
242018484	656	Alcohol oxidase, putative [Pediculus hum	0.942	0.821	0.296	8e-67
242018470	624	glucose dehydrogenase precursor, putativ	0.935	0.857	0.293	3e-63
189238531	636	PREDICTED: similar to glucose dehydrogen	0.923	0.830	0.289	1e-62
270009090	634	hypothetical protein TcasGA2_TC015725 [T	0.923	0.832	0.289	1e-62
357618099	627	hypothetical protein KGM_08630 [Danaus p	0.938	0.856	0.298	3e-62
195566782	845	GD15828 [Drosophila simulans] gi|1942043	0.903	0.611	0.284	1e-61
195478676	650	GE16086 [Drosophila yakuba] gi|194188132	0.923	0.812	0.278	2e-61
242018486	635	glucose dehydrogenase precursor, putativ	0.900	0.811	0.278	5e-61

>gi|193659536|ref|XP_001943395.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 301/556 (54%), Gaps = 12/556 (2%)

Query: 2   LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
           L AKL  +   +VL+LEAG    + + IP +W  SI DS++DW +  + + ++G GL++ 
Sbjct: 155 LAAKLSDEKNLNVLVLEAGGTPLMESEIPGLWANSI-DSEMDWKYTAQEDDTFGQGLENK 213

Query: 62  VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTV 121
            V++ + +  GG++ +N M++DRG + DY ++E   +T W++ D+   Y R E  K + +
Sbjct: 214 RVKVIRGKCFGGTTALNTMLYDRGIESDYTKFELAGLTKWSWEDVLKYYKRSEDCKFEKI 273

Query: 122 RT-ETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAP 180
            T ET S + +V   G + + + +  +   +R  +SKA   + + + D  +V +H G   
Sbjct: 274 TTHETVSRSHSVG--GKLCVDSFRNTRTVEIRQVYSKALNAVNYDTLDFLSVKNHKGFVS 331

Query: 181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
            +  +K+G R+ A+  FL+    K  +++S  S V ++ F+    K  GVEF N  G+ I
Sbjct: 332 SVAIVKNGLRVNAAKAFLKNANRKYNLKISARSLVKRIIFE--GKKAVGVEFENSVGEQI 389

Query: 241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
           +V + +EV+L A  I S ++L +SGVG  ALL    IP+V     VG  L  HP F G+ 
Sbjct: 390 QVKSKKEVILCAGPIGSPKLLLESGVGPKALLDSLGIPVVVENDNVGSNLQAHPNFLGIV 449

Query: 301 YTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQ 360
             F   PV SY+I+E+++EYL + TG    IGM +F G++D D  G PD+ +  YY+   
Sbjct: 450 VKFEMQPVKSYSISEMVFEYLMKHTGPLATIGMCSFTGFIDIDGNGVPDIQIFFYYYSQD 509

Query: 361 DTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS--NDPTKNP 418
           DT+F+   L A N+N+++ E+ + +N D  I +IG+  L PK  G V IN         P
Sbjct: 510 DTVFMPSQLDAMNLNENITEQIIDLNEDNDIKMIGISLLRPKNTGKVTINKTCGGDEYEP 569

Query: 419 TIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRC 478
            I +    + ED+  ++ A++ V  +++   FK++    V L+ +   +    S+EY++ 
Sbjct: 570 VIEFG-SLDNEDVDTLIKAIQWVKNLIQSEAFKHYGPQIVPLKFEGGPEPDVDSDEYWKY 628

Query: 479 AIKYLSTTTNHPTGTLRMG-PPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAV 537
           AIK L+      TGT  M   PS    V+  D  V     L VV    +P+    +S A 
Sbjct: 629 AIKQLTIMNIQMTGTCSMATEPSK--GVLDEDLNVFDADGLMVVDSSALPIMFSAESCAP 686

Query: 538 ALMLAERCATFIQSPV 553
           ++M+AE+ +  I++ +
Sbjct: 687 SIMVAEKASDIIKTKL 702

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|193676365|ref|XP_001949532.1| PREDICTED: hypothetical protein LOC100159632 [Acyrthosiphon pisum]

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 164/558 (29%), Positives = 292/558 (52%), Gaps = 10/558 (1%)

Query: 1    CLTAKLLAQS-GCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
            C+ A  L+++    VL++EAG D    T IP++W  S+ +S  DW F ++ + + G G+ 
Sbjct: 596  CVLANKLSENVKWKVLLIEAGGDPFPITQIPSLWDRSL-NSVADWQFKIQPDSTTGFGIG 654

Query: 60   DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
             N+ ++++ R LGGSSI +  ++ RGS+  Y       +  W+Y+  +  + ++ER +  
Sbjct: 655  GNM-KIHKGRGLGGSSITSAQLYVRGSEQLYNSLVKKGLKNWSYNTTETYFKKVERIR-- 711

Query: 120  TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSD-HVGI 178
               T+TE+ T      G + ++  +  ++++L       FE IG K        D  VG 
Sbjct: 712  -SITKTETNTTIYGKCGLIPVSKFRKTEVSVLEKIVCSGFEHIGCKKESDINEKDIEVGF 770

Query: 179  APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
                  +K+G+ +  +  +L  I  +  ++V K S VTK+  ++T+ K TGVE +   G+
Sbjct: 771  VSMQGIIKNGRSINTAKAYLSPIFGRENLKVMKYSRVTKIIVNKTEMKATGVEVQTKFGQ 830

Query: 239  TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
            T+ + A  EV+L A ++ S +IL  SG+G    LS+  +P+VK+L  VG+   + P+F G
Sbjct: 831  TLTIKAKLEVLLCAGAVGSAQILLASGIGPKKHLSEMEVPVVKDLK-VGENFLITPVFTG 889

Query: 299  LSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN--PDVAVTQYY 356
               ++ K+ V + T  EI ++YL + +G  +     +F G+L+T   G+   D+ V Q+Y
Sbjct: 890  FVISYDKSVVCNQTDEEIAFKYLARHSGPLSRPNGMSFGGFLNTGMSGSSFADIEVHQFY 949

Query: 357  FPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTK 416
             P      L      +  +D+L+  + K+N ++ I I  +  +  K+   + + S +P  
Sbjct: 950  IPKNSYSKLCQLKSMFGFSDNLLSVYAKLNYERAISIFTIALINVKSTSKILLRSKNPLD 1009

Query: 417  NPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYY 476
            +P I   + TE+ DIK+ L A+K++ ++ K             +++  CAK   ++ E++
Sbjct: 1010 SPIIIGNMLTEKHDIKSFLEAIKLLSKIEKSDGMNLVNAKLEDIDLDGCAKYTKKTNEHW 1069

Query: 477  RCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSA 536
             C +KY+ +TT+   G+ RMG  +D  AVV  +  V G SNLR VG  V+P+     S  
Sbjct: 1070 ECLLKYMVSTTSSTAGSCRMGLETDTDAVVDGELNVIGISNLRAVGRSVLPMITSAYSHV 1129

Query: 537  VALMLAERCATFIQSPVN 554
              +M+AER    I+S  N
Sbjct: 1130 PCIMVAERAYGMIKSKYN 1147

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018484|ref|XP_002429705.1| Alcohol oxidase, putative [Pediculus humanus corporis] gi|212514708|gb|EEB16967.1| Alcohol oxidase, putative [Pediculus humanus corporis]

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 171/576 (29%), Positives = 288/576 (50%), Gaps = 37/576 (6%)

Query: 5   KLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVR 64
           +L   S   +LILEAG D   ++ +P +   S   +++DW F+ E +    LG+ D    
Sbjct: 77  RLSENSNWKILILEAGGDPSFTSDVPGLLF-STHGTEIDWKFLSEKHEGSCLGMIDEKCA 135

Query: 65  LNQARVLGGSSIINDMIHDRGSQYDYERW-------------------EGLNMTGWTYSD 105
             + RVLGGSS IN M++ RG+  DY  W                   +  N  G+   D
Sbjct: 136 YPRGRVLGGSSSINAMLYVRGNPQDYNDWRDEVGNDDWDYENVLKYFKKSENANGYCLKD 195

Query: 106 MDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFK 165
            + +    E  + + ++ +  S T    + G ++++   +  +  +++    AFE++   
Sbjct: 196 EEDVAEGGEEGRREDLKGKIMS-TKYHSSGGPLSVSPFASASVEFVKNCIFNAFEELNVP 254

Query: 166 SPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT 225
           S   F     +G +     L  G R  A+ +FL  +KD+  + V KN+   KL       
Sbjct: 255 SLVDFNGKSQIGFSNCPGTLYQGTRANAAKMFLNPVKDRPNLFVVKNAIAKKLLI--KNG 312

Query: 226 KVTGVEF-RNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP 284
           +V GVE  R+ Q KT+KV   +EVV++A +IN+ ++L  SG+G    L  +NIP+V +L 
Sbjct: 313 RVEGVEISRHNQTKTLKVK--KEVVVSAGAINTPQLLLLSGLGPKDHLESFNIPVVSDLK 370

Query: 285 GVGKRLSLHPMFFGLSYTFTKTPVSSYTINEI-----IYEYLTQRTGRFTDIGMSNFIGY 339
           GVG+ L  H +F G  ++  K  + S+T+  +     +Y +LTQR G  + IGM++  G+
Sbjct: 371 GVGQNLQDHFVFVGSLFSLFK--LRSHTLPPLTPLDAMYFFLTQRPGYLSSIGMTDLTGF 428

Query: 340 LDTDFKGN--PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV 397
           ++TD      P++     YF   D   L   ++A  +NDD+ E F K+  +  +LII   
Sbjct: 429 VNTDDDNGTIPNIQYLFIYFAKGDNYLLPETMRALRLNDDIREEFTKLAKETGLLIIAPT 488

Query: 398 SLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNS 457
            L P   G +E+ S+D    P I   +   E+D K +L  +K + R+    +FK  +   
Sbjct: 489 LLKPNGRGKIELKSDDVNDPPKIHADILKSEDDRKVLLEGIKFLMRLNDTTNFKILEPKL 548

Query: 458 VQLEIKECAKCKYQS--EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGF 515
            +  I EC   +  S  ++Y+ C +KYL+T+  HP GT +MGP +D  AVV    +V G 
Sbjct: 549 HKFNIAECEPFRETSSDDDYWSCLMKYLTTSLYHPVGTCKMGPETDEYAVVDGKLKVRGV 608

Query: 516 SNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQS 551
            NLR+    ++P  +  +++A   M+ E C+ FI++
Sbjct: 609 ENLRIADASIMPTIVRGNTNAACFMIGEMCSDFIKN 644

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018470|ref|XP_002429698.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514701|gb|EEB16960.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 164/558 (29%), Positives = 286/558 (51%), Gaps = 23/558 (4%)

Query: 10  SGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQAR 69
           S  +VL++EAG +  +   IP +    +  S+ +WGF  E      +G+++   R  + +
Sbjct: 79  SDWNVLLVEAGKEPTLVLDIPMLASIGVL-SEYNWGFKAEREEGVCMGMEEGRCRWPKGK 137

Query: 70  VLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESET 129
            LGG+S+IN MI+ RG++ D++ W      GW Y D+   + + E++++   R      +
Sbjct: 138 CLGGTSVINYMIYTRGNKEDFDEWARDGNEGWGYKDVWPYFVKSEKSRIPHFR-----HS 192

Query: 130 VTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQ 189
           V+   +G VT+  +  +    L   F +A +++G+K  D    +  +G A     +++G+
Sbjct: 193 VSHGQEGPVTVDFLPYQ--TKLIDAFLQAGQEMGYKLIDYNDGTPPLGFAKVQGTVENGR 250

Query: 190 RMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVV 249
           R  A   +LR IK ++ +Q++  +  TKL  D    +  GVE     GKT +V A +EV+
Sbjct: 251 RFSAERAYLRPIKYRSNLQITLKTLATKLLIDPITKRTYGVEMVK-NGKTHRVLAKKEVI 309

Query: 250 LAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV- 308
           L+A ++ S ++L  SG+G  + L   NI +++N  GVGK L  H  + GL++   +T V 
Sbjct: 310 LSAGALQSPQLLMLSGIGPKSDLESLNITVLQNSEGVGKNLQEHICYSGLTFLINQTNVG 369

Query: 309 ---SSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDT----DFKGNPDVAV--TQYYFPA 359
              +S        E+  +  G  T +G    +GY+ T    D +G PD+         P 
Sbjct: 370 VSTNSLFNFNNFIEFFERGKGVLTLLGGVEGLGYISTKLNDDQRGRPDIEFIFASASIPN 429

Query: 360 QDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPT 419
            + L LR   K   + D++ E+  K   ++    +  + L PK++G +++ SN P   P 
Sbjct: 430 DNGLLLR---KGIGITDEIYEKTYKPLENRETWTVWPMLLHPKSKGYLKLKSNSPYDWPK 486

Query: 420 IRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCA 479
                + +E D+  ++  VKMV  + + + F+ + +      +  C +    S+EY++CA
Sbjct: 487 FYANYFQDEHDLNTLVEGVKMVVNMSQTKAFQKYGSFLNPFPVSGCEEFNLNSDEYWKCA 546

Query: 480 IKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVAL 539
           +K L TT +H +GT +MGPPSD  AVV P+ +V G  NLRVV   +IP  +   + A A 
Sbjct: 547 VKSLLTTLHHQSGTCKMGPPSDTTAVVSPELKVYGIKNLRVVDTSIIPKLVTAHTMAAAY 606

Query: 540 MLAERCATFI-QSPVNVT 556
           M+ E+ +  I QS +N T
Sbjct: 607 MIGEKASDMIKQSWLNNT 624

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238531|ref|XP_972797.2| PREDICTED: similar to glucose dehydrogenase [Tribolium castaneum]

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/570 (28%), Positives = 286/570 (50%), Gaps = 42/570 (7%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
            +  +L       VL+LEAG      + IP +   ++  +  +W F+ E  P+   G ++
Sbjct: 83  VIANRLSENPNWEVLLLEAGKGENFFSQIPLV-CPTLAFTHYNWDFIAEYQPNVSFGFEN 141

Query: 61  NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
           N +R  + R LGG+S+IN MI+ RG+++DY+RW G    GW+Y D+   + + ER+ L+ 
Sbjct: 142 NRMRWPRGRALGGTSVINFMIYTRGNRHDYDRWAGQGNPGWSYRDVLPYFIKSERSTLNN 201

Query: 121 VRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAP 180
                         +G + ++ I   +I  LR+ F +   ++G    D        G++P
Sbjct: 202 PHPGVHG------TNGYLGVSDIYQSEI--LRA-FIEGGNELGLPYFDYNANEKSFGVSP 252

Query: 181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
               +K G+R   +  FL  I+ +  + +  ++ VTK+  D    +  GVEF    G+  
Sbjct: 253 IQATVKRGRRHTTARAFLHPIRHRKNLHMLTSAFVTKVLIDPNTRQTYGVEFSR-FGRKY 311

Query: 241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
           +V A++EV+L+A + NS ++L  +G+G    L++  IPL+++LP VG+ L  H  + GLS
Sbjct: 312 QVTASKEVILSAGTFNSPKLLMLAGIGPRDHLAEMGIPLLEDLP-VGQNLHDHLTYPGLS 370

Query: 301 YTFTKTPVSSYTINEI----IYEYLTQRTGRFTDIGMSNFIGYLDT----DFKGNPDVAV 352
           +   K P+S   ++ I    I ++L   TG +T +G    IGY+ T    + +  PD+  
Sbjct: 371 FIIDK-PLSLSVLHLINPKNIIDFLFNGTGPYTSLGGVGGIGYIKTKESLEVEDIPDI-- 427

Query: 353 TQYYFPAQDTLFLRGHL--------KAW-NVNDDLVERFVKVNADKPILIIGLVSLCPKA 403
                   + LFL G L        + W N+ DD+         + P   I  + L PK+
Sbjct: 428 --------ELLFLDGSLSTDYGLWNRRWMNIRDDVYYPVYGPTHNIPTWTIFPMLLHPKS 479

Query: 404 EGVVEINSNDPTKNPTIRYPLYTE--EEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLE 461
            G +++ S +P   P +    +T+  ++D+K +L A++ + ++   R F+   T      
Sbjct: 480 TGYLKLKSRNPRDYPLLYGNYFTDPAQQDLKTMLAAIRYIQKLANTRPFQEMGTRMNPNP 539

Query: 462 IKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVV 521
           I  CA   + S+ Y+ CAI+ +S T +H  GT +MGP  DP AVV  + +V G   LRV 
Sbjct: 540 IPVCAHLIFDSDAYWMCAIRAISVTLHHQVGTAKMGPKDDPTAVVNHELKVYGVKGLRVA 599

Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFIQS 551
              VIP  +   ++A A+M+ E+ A  I++
Sbjct: 600 DCSVIPFALGAHTNAPAIMVGEKAADLIKA 629

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009090|gb|EFA05538.1| hypothetical protein TcasGA2_TC015725 [Tribolium castaneum]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/570 (28%), Positives = 286/570 (50%), Gaps = 42/570 (7%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
            +  +L       VL+LEAG      + IP +   ++  +  +W F+ E  P+   G ++
Sbjct: 81  VIANRLSENPNWEVLLLEAGKGENFFSQIPLV-CPTLAFTHYNWDFIAEYQPNVSFGFEN 139

Query: 61  NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
           N +R  + R LGG+S+IN MI+ RG+++DY+RW G    GW+Y D+   + + ER+ L+ 
Sbjct: 140 NRMRWPRGRALGGTSVINFMIYTRGNRHDYDRWAGQGNPGWSYRDVLPYFIKSERSTLNN 199

Query: 121 VRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAP 180
                         +G + ++ I   +I  LR+ F +   ++G    D        G++P
Sbjct: 200 PHPGVHG------TNGYLGVSDIYQSEI--LRA-FIEGGNELGLPYFDYNANEKSFGVSP 250

Query: 181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
               +K G+R   +  FL  I+ +  + +  ++ VTK+  D    +  GVEF    G+  
Sbjct: 251 IQATVKRGRRHTTARAFLHPIRHRKNLHMLTSAFVTKVLIDPNTRQTYGVEFSR-FGRKY 309

Query: 241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
           +V A++EV+L+A + NS ++L  +G+G    L++  IPL+++LP VG+ L  H  + GLS
Sbjct: 310 QVTASKEVILSAGTFNSPKLLMLAGIGPRDHLAEMGIPLLEDLP-VGQNLHDHLTYPGLS 368

Query: 301 YTFTKTPVSSYTINEI----IYEYLTQRTGRFTDIGMSNFIGYLDT----DFKGNPDVAV 352
           +   K P+S   ++ I    I ++L   TG +T +G    IGY+ T    + +  PD+  
Sbjct: 369 FIIDK-PLSLSVLHLINPKNIIDFLFNGTGPYTSLGGVGGIGYIKTKESLEVEDIPDI-- 425

Query: 353 TQYYFPAQDTLFLRGHL--------KAW-NVNDDLVERFVKVNADKPILIIGLVSLCPKA 403
                   + LFL G L        + W N+ DD+         + P   I  + L PK+
Sbjct: 426 --------ELLFLDGSLSTDYGLWNRRWMNIRDDVYYPVYGPTHNIPTWTIFPMLLHPKS 477

Query: 404 EGVVEINSNDPTKNPTIRYPLYTE--EEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLE 461
            G +++ S +P   P +    +T+  ++D+K +L A++ + ++   R F+   T      
Sbjct: 478 TGYLKLKSRNPRDYPLLYGNYFTDPAQQDLKTMLAAIRYIQKLANTRPFQEMGTRMNPNP 537

Query: 462 IKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVV 521
           I  CA   + S+ Y+ CAI+ +S T +H  GT +MGP  DP AVV  + +V G   LRV 
Sbjct: 538 IPVCAHLIFDSDAYWMCAIRAISVTLHHQVGTAKMGPKDDPTAVVNHELKVYGVKGLRVA 597

Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFIQS 551
              VIP  +   ++A A+M+ E+ A  I++
Sbjct: 598 DCSVIPFALGAHTNAPAIMVGEKAADLIKA 627

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618099|gb|EHJ71193.1| hypothetical protein KGM_08630 [Danaus plexippus]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 170/569 (29%), Positives = 278/569 (48%), Gaps = 32/569 (5%)

Query: 2   LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
           + A+L       VL+LEAG D P    +P+M+   I  S +DWG+  E  P+  LG KD 
Sbjct: 65  MAARLSEVPEWRVLLLEAGFDEPTGAQVPSMFLNFI-GSSIDWGYHTEPEPAACLGEKDR 123

Query: 62  VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTV 121
                + +VLGG+S++N M++ RGS+ D++ W      GW+Y ++   + + E    D  
Sbjct: 124 KCYWPRGKVLGGTSVMNGMMYIRGSRKDFDSWAAAGNEGWSYDEVLPYFLKSE----DNK 179

Query: 122 RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPP 181
           + E E +       G +T++         L  +  KA E++G++  D      H G +  
Sbjct: 180 QIE-EMDKGYHATGGPLTVSQFPYHPP--LSHSIVKAAEELGYEIRD-LNGEKHTGFSIA 235

Query: 182 MYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK 241
               ++G R+ A+  FLR  K++  + +  N+ V+K+  ++T  +   VE RN  G T  
Sbjct: 236 QTTNRNGSRLSAARAFLRPAKNRPNLHIMLNATVSKILINQTTRQAYAVEVRNSFGGTEV 295

Query: 242 VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSY 301
           + AN E++L+A ++ S +ILQ SGVGD  +L++  +  +  LP VG+ L  H   F    
Sbjct: 296 IFANHEIILSAGAVASPQILQLSGVGDPKVLNRAGVRPLHVLPAVGRNLHNHVAHF---L 352

Query: 302 TFTKTPVSSYTIN-EIIYEYLTQRTGRFTDIGMSNFIGYLDTDF----KGNPDVAVTQYY 356
            F     ++  +N     EYL  R G  +  G+S   G+++T +    + NPD+   Q +
Sbjct: 353 NFHVNDNNTVPLNWATAMEYLLFRDGLMSGTGISEVTGFINTRYSDPSEDNPDI---QLF 409

Query: 357 FPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTK 416
           F      FL    K   V + L E F  V     +L        PK+ G +EI S DP +
Sbjct: 410 FGG----FLADCAKTGMVGEKLGEGFRSVQMFPAVLR-------PKSRGRLEIASADPFE 458

Query: 417 NPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYY 476
            P I     T  +D+K ++  +K   R+ + +  K +     +  +K C K K+  + Y+
Sbjct: 459 YPKIYANYLTHPDDVKTLVEGIKFAIRLSETKALKKYGMRLDKTPVKGCEKIKFGCDAYW 518

Query: 477 RCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSA 536
            CA++  +   NH  G+ +MGP  DP AVV    +V G   LRVV   V+P     +++A
Sbjct: 519 ECAVRVQTAPENHQAGSCKMGPRGDPTAVVDNLLQVQGLDRLRVVDASVMPSVTSGNTNA 578

Query: 537 VALMLAERCATFI-QSPVNVTTVTKTTVE 564
             +M+AER A FI Q  +  T V+ T  +
Sbjct: 579 PVIMIAERAADFIKQRWLGTTPVSYTNTD 607

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195566782|ref|XP_002106955.1| GD15828 [Drosophila simulans] gi|194204351|gb|EDX17927.1| GD15828 [Drosophila simulans]

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/548 (28%), Positives = 278/548 (50%), Gaps = 31/548 (5%)

Query: 14  VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
           VL+LEAG D PI + +PA++   +Q +K  W +  E +     G+KD      + ++LGG
Sbjct: 294 VLVLEAGGDPPIESELPALFF-GLQHTKFTWNYFTEPSDDACQGMKDGRCYWPRGKMLGG 352

Query: 74  SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVD 133
           S   N M++ RG++ D++ W  +  TGW+Y   D +    E++           +     
Sbjct: 353 SGGANAMLYVRGNRRDFDGWAAMGSTGWSY---DHVLPFFEKS--------VTPQGNATH 401

Query: 134 NDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIA 193
             G VT+   + +  ++ +     A E +G    + F      G A     ++ GQRM  
Sbjct: 402 PKGYVTLKPFERQDNDIHQLIIDGAHE-LGQPYVERFQEGSETGYAHVPGTVRQGQRMST 460

Query: 194 SSIFLRAI-KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
           +  +L A+ K ++ + V KN+ VTKL  D     VTGV+F    G + +V   ++VV++A
Sbjct: 461 AKGYLGAVAKSRSNLHVVKNALVTKLDLD--GETVTGVKFER-AGVSHRVKVTKDVVISA 517

Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH---PMFFGLSYTFTKTPVS 309
            +I+S  +L +SG+G +  L +  IP+  +LPGVG+ L  H   P+F  L       P++
Sbjct: 518 GAIDSPALLLRSGIGPSKHLEELGIPVELDLPGVGRNLQDHVVVPIFLRLD-EGQAEPMT 576

Query: 310 SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN---PDVAVTQYYFPAQDTLFLR 366
              + + IY+YL  RTG       ++ + +++T+   +   PD      +F   D   L 
Sbjct: 577 EKAVLDGIYQYLIHRTGPLAAHSTASLVAFINTNASSDSAYPDTENHHMFFQRADHASLE 636

Query: 367 GHLKAWNVND---DLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
              K  ++ D   D+++ ++K   D  +L + ++   P A G + + S DP + P +   
Sbjct: 637 LFTKGLSIQDQYTDVLQEYLK---DSHLLCVFILLSHPAARGELHLKSRDPKEPPILTSN 693

Query: 424 LYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK-YQSEEYYRCAIKY 482
             +E ED+  ++  ++ ++ + + + F++      ++ IKEC   + Y+S+EY+RC  KY
Sbjct: 694 YLSESEDVATLMRGIRYIESLGQTKAFQDHLAEIARIPIKECDHIENYRSDEYWRCYAKY 753

Query: 483 LSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLA 542
            + T  H +GT++MGP SD  A V    +V+G  NLRV    ++P  +  +++A  +M+ 
Sbjct: 754 FTVTCYHQSGTVKMGPDSDHEACVSQRLKVHGLENLRVADASIMPAVVSANTNAATVMIG 813

Query: 543 ERCATFIQ 550
           ER A FIQ
Sbjct: 814 ERAAHFIQ 821

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478676|ref|XP_002100608.1| GE16086 [Drosophila yakuba] gi|194188132|gb|EDX01716.1| GE16086 [Drosophila yakuba]

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 274/553 (49%), Gaps = 25/553 (4%)

Query: 14  VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
           VL+LEAG D PI + +PA++   +Q S+  W +  E +     G+KD      + ++LGG
Sbjct: 99  VLVLEAGGDPPIESELPALFF-GLQHSEFTWNYFTEPSEEACQGMKDGRCYWPRGKMLGG 157

Query: 74  SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVD 133
           S   N M++ RG++ D++ W  +  TGW+Y   D +    E++           +     
Sbjct: 158 SGGANAMLYVRGNRRDFDGWAAMGNTGWSY---DKVMPFFEKS--------VTPQGNATH 206

Query: 134 NDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIA 193
             G VT+   + +  N +         ++G    + F      G A     +++GQRM  
Sbjct: 207 PMGYVTLKPFQRQD-NAIHQMIIDGGRELGRPYVERFQEGSETGYAHVPGTVREGQRMST 265

Query: 194 SSIFLRAI-KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
           +  +L A+ K ++ + V KN+ VTKL FD     VT V F    G + +V   ++VV++A
Sbjct: 266 AKGYLGAVSKTRSNLHVVKNALVTKLDFD--GDTVTAVNFER-AGVSHRVKVTKDVVISA 322

Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH---PMFFGLSYTFTKTPVS 309
            +I+S  +L +SG+G +  L +  IP+V N+PGVG+ L  H   P+F  L     +  ++
Sbjct: 323 GAIDSPALLLRSGIGPSRQLEELGIPVVLNIPGVGRNLQDHVVVPVFLKLDEGQAEA-MT 381

Query: 310 SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN---PDVAVTQYYFPAQDTLFLR 366
              + + IY+YL  RTG       ++ + +++T+   +   PD      +F   +   L 
Sbjct: 382 EKGVLDGIYQYLIHRTGPLATHSTASLVAFINTNASSDSAYPDTENHHLFFQRANHASLE 441

Query: 367 GHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYT 426
              K  ++ +  ++       D  +L + L+   P A+G + + S DP   P +     +
Sbjct: 442 LFTKGLSIQEQYIDALQGYLKDSHLLCVFLLLSHPAAKGELHLKSRDPRDAPILTSNYLS 501

Query: 427 EEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC-KYQSEEYYRCAIKYLST 485
           + ED+  ++  ++ ++ + + + F++      ++ I EC    KY+SEEY+RC  KY + 
Sbjct: 502 QPEDVATLMRGIRYIESLEQTKAFRDHLAEIARIPIAECDHIEKYRSEEYWRCYAKYFTV 561

Query: 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC 545
           T  H +GT++MGP  DP A VG   +V+G  NLRV    ++P  +  +++A  +M+ ER 
Sbjct: 562 TCYHQSGTVKMGPDYDPEACVGQRLKVHGLENLRVADASIMPAVVSANTNAATVMIGERA 621

Query: 546 ATFIQSPVNVTTV 558
           A FI+      TV
Sbjct: 622 AHFIREDYEGETV 634

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018486|ref|XP_002429706.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514709|gb|EEB16968.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/567 (27%), Positives = 286/567 (50%), Gaps = 52/567 (9%)

Query: 13  SVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLG 72
           SVL++EAG     ++ IP +W  S++ +K+DW + LE   +  LG+ +      + +VLG
Sbjct: 87  SVLLIEAGGSPTPTSEIPGLWISSLK-TKMDWNYKLEKMTNCCLGMIEEKCLSPRGKVLG 145

Query: 73  GSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIER------------TKLDT 120
           G+S+IN MI+ RG+  DY  WE +   GW Y ++   + R E+            +KL +
Sbjct: 146 GTSVINAMIYVRGNPEDYNEWENMGNEGWAYKNILKYFKRSEKMSGFNFVDENEISKLVS 205

Query: 121 VRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSD-----H 175
            +  +    + V++ G       K   ++ L++      E++G      F VSD      
Sbjct: 206 KKYHSSKGLLNVEHFG-------KRPNVDYLKNVIFDGVEELG-----EFYVSDVNGRFQ 253

Query: 176 VGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235
           +G   P    ++G+R   +  FL  IK +  + + KNS   KL  D  + +V GV+  + 
Sbjct: 254 LGFTEPQTTTENGRRANTAKTFLNPIKGRKNLLIVKNSMAHKLILD--RKRVIGVQVES- 310

Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
            G+  +V  ++EV+L+A SIN+ ++L  SG+G    L   NIP+V  + GVG+ L  H +
Sbjct: 311 NGEMKRVFVHKEVILSAGSINTPQLLMLSGIGPRQHLESLNIPVVHEMNGVGQNLQDHVV 370

Query: 296 FFGLSYTFTKTP----------VSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK 345
            +    +  K            +S Y      +++L   TG ++     + +G+++T FK
Sbjct: 371 TYVAPISINKHKPDKMSRPGDDLSHY------HDFLLHGTGPYSSFTNLDVVGFVNT-FK 423

Query: 346 GN--PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKA 403
            +  PDV     YF   DT  ++   +  N+  ++   +VK+  D  +L+I    L PK+
Sbjct: 424 NSTLPDVQYHFMYFYLNDTESVKKFTRVLNLKPEIGNEYVKIVRDANLLLISTTLLRPKS 483

Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
            G +E+ S++P  +P I         D+  ++  V+ V  + + +  K  ++N  ++ +K
Sbjct: 484 TGRIELKSSNPYDSPKIIGNYLNVPGDLDTLIRGVEFVVSLSETKSLKMRESNLERIRLK 543

Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
            C+  K++S EY+ C I++LST   HP GT +MGP  D  +VV    +V+G +NLR+   
Sbjct: 544 NCSSEKFKSREYWTCLIRHLSTNLYHPVGTCKMGPKKDSTSVVDSKLKVHGLTNLRIADG 603

Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQ 550
            ++P+ +  +++A  +M+ E+ A  I+
Sbjct: 604 SIMPLIVRGNTNAACIMIGEKAAQMIK 630

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.631	0.558	0.301	2.3e-58
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.933	0.857	0.275	3.7e-55
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.662	0.606	0.296	2.5e-54
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.938	0.848	0.284	2.4e-53
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.917	0.746	0.266	5.6e-52
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.914	0.604	0.275	9.8e-49
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.914	0.835	0.277	6e-48
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.935	0.868	0.258	7.7e-48
FB|FBgn0030586	626	CG12539 [Drosophila melanogast	0.935	0.854	0.265	2.6e-47
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.917	0.723	0.252	9.5e-47

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 113/375 (30%), Positives = 193/375 (51%)

Query:   185 LKDGQRMIASSIFLRAI-KDKNTVQVSKNSEVTKLCFD-ETKTKVTGVEFRNPQGKTIKV 242
             ++ GQRM     +L A+ K +  + V KN+ VTKL  D ET   V  V+F    G T +V
Sbjct:   253 VRQGQRMSTGKGYLGAVSKSRPNLHVVKNALVTKLDLDGET---VKEVKFERA-GVTHRV 308

Query:   243 NANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH---PMFFGL 299
                ++VV++A +I+S  +L +SG+G +  L +  IP+  +LPGVG+ L  H   P+F  L
Sbjct:   309 KVTKDVVISAGAIDSPALLLRSGIGPSKHLKELGIPVKLDLPGVGRNLQDHVLVPVFLRL 368

Query:   300 SYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN---PDVAVTQYY 356
                  + P++     + IY+YL  R G       ++ +G+++T+   +   PD      +
Sbjct:   369 DEGQGE-PMTDQAALDSIYQYLIYRAGPLAAHSTASLVGFINTNASSDGAYPDTENHHMF 427

Query:   357 FPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTK 416
             F       L    K  ++ D   E   +   D  +L + ++   P A G + + S DP  
Sbjct:   428 FQRAHHASLELFTKGLSIQDQYTEVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKV 487

Query:   417 NPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK-YQSEEY 475
              P +     TE ED+  ++  ++ ++ + + + F++      ++ IKEC + + Y+SEEY
Sbjct:   488 PPILTSNYLTESEDVATLMRGIRYIESLEQTKAFQDHLAEIARIPIKECDQIENYRSEEY 547

Query:   476 YRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
             +RC  KY + T  H +GT++MGP  D  A V    +V+G  NLRV    ++P  +  +++
Sbjct:   548 WRCYAKYFTVTCYHQSGTVKMGPDYDNEACVSQRLKVHGLENLRVADASIMPAVVSANTN 607

Query:   536 AVALMLAERCATFIQ 550
             A  +M+ ER A FIQ
Sbjct:   608 AATVMIGERAAHFIQ 622

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 153/556 (27%), Positives = 267/556 (48%)

Query:     2 LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
             +  +L       VL+LEAG D PI T   A WH + Q S+ DW +  + N    + +K  
Sbjct:    72 VAGRLAEVKNWKVLLLEAGGDPPIETEFVA-WHMATQFSEWDWQYHSKPNGRACMAMKGE 130

Query:    62 VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXX 121
                  + ++LGG++ +N MI+ RG++ D++ WE     GW Y ++   + + E  +    
Sbjct:   131 SCHWPRGKMLGGTNGMNAMIYARGTRKDFDDWEERGNPGWGYDEVLKHFRKAEDLR---- 186

Query:   122 XXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPP 181
                        D+              N  R+T     +++G+ S   FT    VG    
Sbjct:   187 --STRPDYKPGDHGVGGPMGLNNYVSDNEFRTTIRAGMQEMGYGSAPDFTEGSFVG-QMD 243

Query:   182 MYYLKDGQRMIASSIFLRAIKDKNT--VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT 239
             +   +DG R I ++   R+   KNT  + + +++ V K+  D    +   V F +   K 
Sbjct:   244 ILGTQDGGRRITTA---RSHLKKNTPNLHILRHAHVKKINLDRNN-RAESVTFVHRGKKE 299

Query:   240 IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH---PMF 296
               V A++EV+++A +I S +IL  SG+G A  L    IP+  +LP VG+ L  H   PM 
Sbjct:   300 YTVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKLDLP-VGENLKDHASLPMI 358

Query:   297 FGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDT-DFKG-NPDVAVTQ 354
             F +  +  + P     + + +Y  L  R  +      +   G+++T   +G NPD+  T 
Sbjct:   359 FQIDKSTARKPTEEELV-DAMYNLLMGRYSKLLHHEATALTGFINTTSIEGPNPDIQTTN 417

Query:   355 YYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDP 414
             + F    +  L+G++ A   ND + +  +  N +    I  L+ L P + G + + S + 
Sbjct:   418 F-FSLMQSPELKGYVAATGFNDRVAKSILSANQETNTYITYLLHLKPFSAGSLTLQSANY 476

Query:   415 TKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEE 474
                P I     T+E D+   + A+ +   +   + F   +    +L+++ C    YQS++
Sbjct:   477 LDAPIIDPGYMTDERDVDTYIRALNIYKNLPNTKAFSEREAALHKLDLEACNGLTYQSDD 536

Query:   475 YYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDS 534
             Y+RC I++++TT  HP GT RMGP +DP AVV P  RV+G   LRV+   ++P  +  ++
Sbjct:   537 YWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKGLRVIDASIMPDIVGANT 596

Query:   535 SAVALMLAERCATFIQ 550
             +A  +M+AE+ A  I+
Sbjct:   597 NAACIMIAEKGADMIK 612

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 424 (154.3 bits), Expect = 2.5e-54, Sum P(2) = 2.5e-54
 Identities = 117/395 (29%), Positives = 187/395 (47%)

Query:   157 KAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVT 216
             KA E++GF   D     +  G        ++G R  ++  FLR  + +N + +  N+  T
Sbjct:   226 KAGEELGFSVHD-LNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTAT 284

Query:   217 KLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYN 276
             K+        V GVE  +  G T K+   +EVVL+A ++NS  IL  SGVG    L + N
Sbjct:   285 KILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVN 344

Query:   277 IPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTIN-EIIYEYLTQRTGRFTDIGMSN 335
             +  V NLPGVGK L  H  +F     F      +  +N     EYL  R G  +  G+S+
Sbjct:   345 VRTVHNLPGVGKNLHNHVTYFT---NFFIDDADTAPLNWATAMEYLLFRDGLMSGTGISD 401

Query:   336 FIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIG 395
                 L T +  +P+    Q YF      +L    +   V + L       N  + I I  
Sbjct:   402 VTAKLATRYADSPERPDLQLYFGG----YLASCARTGQVGELLS------NNSRSIQIFP 451

Query:   396 LVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQT 455
              V L P++ G + + S DP + P I     T E+D+K ++  +K V R+ +    K +  
Sbjct:   452 AV-LNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGM 510

Query:   456 NSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGF 515
                +  +K C    + S+ Y+ CA++  +   NH  G+ +MGP  DP+AVV  + RV+G 
Sbjct:   511 RLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGI 570

Query:   516 SNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550
               LRV+   ++P     ++ A A+M+AE+ A  ++
Sbjct:   571 RGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLK 605

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 160/563 (28%), Positives = 261/563 (46%)

Query:     2 LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
             L A+L      SVL+LEAG D P+   +P ++    Q S  DW ++ E +  Y L ++D 
Sbjct:    71 LAARLSENPEWSVLLLEAGGDEPLLIDLPQLY-PVFQRSPWDWKYLTEPSDRYCLAMEDQ 129

Query:    62 VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXX 121
                  +A+VLGG S IN M++ RG++ DY++W  L   GW Y ++   + ++E  ++   
Sbjct:   130 RCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNILHYFRKLEDMRVPGF 189

Query:   122 XXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPD-TFTVSDHVGIAP 180
                           G             LL   F +A + +G   PD  F      G AP
Sbjct:   190 EHSPYH------GHGGPISVERYRFPSPLL-DIFMRAAQQLGMVHPDGDFNGRSQTGFAP 242

Query:   181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
             P   L+DG R  A+  ++R    +  + +   + V ++  D    +  GV F     K  
Sbjct:   243 PHGSLRDGLRCSANKGYIRRSWQRPNLDIVLKAFVERIVIDPQSHRAIGVIFEYGLLKHT 302

Query:   241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
              V A REV+L+A S+ S ++L  SGVG    L    IP+V++LPGVG  L  H    G  
Sbjct:   303 -VRAKREVILSAGSLASPQLLMVSGVGPRDQLEPQGIPVVQHLPGVGGNLQDHISTSGAI 361

Query:   301 YTFT--KTPVSSYTINEIIYEYLTQRTGRFTD-----IGMSNFIGYLDTDFKGN----PD 349
             YTF   +    S+ + E++ E   +   + +D     + +S  +G+  T ++      PD
Sbjct:   362 YTFDSGQNRHLSFIVPEMMNEQAVEDFVQGSDSFFYAMPVSEVMGFFSTRYQDPRLDWPD 421

Query:   350 VAVTQ--YYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVV 407
             V +    Y + A   +   G   A    D+  E F  V      +I  L+ + P++ G +
Sbjct:   422 VQIFMGSYGYGADGGMI--GRRGAAITLDNYAEAFEPVLYQDSFVIAPLL-MRPRSRGYL 478

Query:   408 EINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAK 467
             ++ S DP  +P I    Y +  D+  ++  +K+  R+ +    ++        E + C +
Sbjct:   479 QLRSADPKVHPLIHANYYDDPHDMAVMVEGLKLAHRLTQTPVMQSLNATMNIYEWRNCPE 538

Query:   468 CKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIP 527
              +Y S+ ++ C  ++ S T  HP GT +M P SDP  VV P  RV G   LRV+   ++P
Sbjct:   539 VEYLSDAFWECLARFYSQTIYHPVGTCKMAPASDPAGVVDPRLRVRGMRGLRVIDASIMP 598

Query:   528 VEMVTDSSAVALMLAERCATFIQ 550
                  +++A  LMLAER A  I+
Sbjct:   599 TIPTGNTNAPTLMLAERGADIIK 621

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 145/544 (26%), Positives = 261/544 (47%)

Query:    14 VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
             VL++EAGPD    + +P++    +Q SKLDW +  E +    LG+++N     + RVLGG
Sbjct:    83 VLLIEAGPDENEISDVPSL-AAYLQLSKLDWAYKTEPSTKACLGMQNNRCNWPRGRVLGG 141

Query:    74 SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXXXXXXXXXXXXXD 133
             SS++N M++ RG+++DY+ W  L   GW Y ++   + + E  +                
Sbjct:   142 SSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLRYFKKSEDNR------NPYLANNKYH 195

Query:   134 NDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIA 193
               G             L+ + F +A   +G+ + D    +   G       ++ G R   
Sbjct:   196 GRGGLLTVQESPWHSPLV-AAFVEAGTQLGYDNRD-INGAKQAGFMIAQGTIRRGSRCST 253

Query:   194 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 253
             +  FLR I+ +    +S NS VT++  +    +   VEF    GK  ++ A REV+++A 
Sbjct:   254 AKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVK-HGKVYRIAARREVIISAG 312

Query:   254 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVS---- 309
             +IN+ +++  SG+G    L K+ I ++++LP VG+ +  H    GL++   K PV+    
Sbjct:   313 AINTPQLMMLSGLGPRKHLEKHGIRVLQDLP-VGENMQDHVGMGGLTFLVDK-PVAIVQD 370

Query:   310 SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNP-DVAVTQYYF-PAQDTLFLRG 367
              +    + ++Y+ +  G  T +G    + ++ T +     D    Q++  PA        
Sbjct:   371 RFNPTAVTFQYVLRERGPMTTLGGVEGLAFVHTPYSNRSLDWPDIQFHMAPASINSDNGA 430

Query:   368 HLK-AWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYT 426
              +K    + + + +      A+K    I  + L P++ G V++ S +P   P I    + 
Sbjct:   431 RVKKVLGLKESVYQEVYHPIANKDSWTIMPLLLRPRSRGSVKLRSANPFHYPLINANYFD 490

Query:   427 EEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTT 486
             +  D K ++   K+  RV + + FK F +   +  +  C + K+ S+ Y  C ++ +S T
Sbjct:   491 DPLDAKTLVEGAKIALRVAEAQVFKQFGSRLWRKPLPNCKQHKFLSDAYLECHVRTISMT 550

Query:   487 TNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCA 546
               HP GT +MGP  DP AVV P  RV G   LRV+   ++P     +++A  +M+AE+ A
Sbjct:   551 IYHPCGTAKMGPAWDPEAVVDPRLRVYGVRGLRVIDASIMPTISSGNTNAPVIMIAEKGA 610

Query:   547 TFIQ 550
               I+
Sbjct:   611 DLIK 614

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 515 (186.3 bits), Expect = 9.8e-49, P = 9.8e-49
 Identities = 151/548 (27%), Positives = 254/548 (46%)

Query:    13 SVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVL--ESNPSYGLGLKDNVVRLNQARV 70
             +VL+LEAG D    + +PA+    +Q ++LDW +     S   Y   +K +     + +V
Sbjct:   321 TVLLLEAGGDETEISDVPAL-AGYLQLTELDWKYQTTPSSTRQYCQAMKGDRCFWPRGKV 379

Query:    71 LGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXXXXXXXXXXX 130
             LGGSS++N M++ RGS+ DY  W  L   GW Y  M   + + E  +             
Sbjct:   380 LGGSSVLNAMVYVRGSKNDYNHWASLGNPGWDYDSMLKYFLKSEDVR-----NPYLAKTP 434

Query:   131 XXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQR 190
               +  G              L   F +A  ++G+++ D    +   G       ++ G R
Sbjct:   435 YHETGGYLTVQEAPWRTP--LSIAFLQAGIEMGYENRD-INGAQQTGFMLTQSTIRRGAR 491

Query:   191 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVL 250
                   F+R ++ +    V  ++E T++ FD+ K  + GVE+     K + V   REV+ 
Sbjct:   492 CSTGKAFIRPVRQRKNFDVLLHAEATRILFDKQKRAI-GVEYMRGGRKNV-VFVRREVIA 549

Query:   251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYT----FTKT 306
             +A ++N+ ++L  SGVG A  L ++NIP++ +LP VG  +  H    GL++      T T
Sbjct:   550 SAGALNTPKLLMLSGVGPAEHLQEHNIPVISDLP-VGNNMQDHVGLGGLTFVVDAPLTVT 608

Query:   307 PVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKG-NPDVAVTQYYFPAQDTLFL 365
                  TI  +  EY+ +  G  T  G+   + +L+T ++  + D    Q++F        
Sbjct:   609 RNRFQTI-PVSMEYILRERGPMTFSGVEG-VAFLNTKYQDPSVDWPDVQFHFCPSSINSD 666

Query:   366 RGHL--KAWNVNDDLVERFVK-VNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRY 422
              G    K  N+ D       K +   +   I+ L+ L PK+ G V +NS +P   P I  
Sbjct:   667 GGEQIRKILNLRDGFYNTVYKPLQHSETWSILPLL-LRPKSTGWVRLNSRNPQHQPKIIP 725

Query:   423 PLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKY 482
               +  +EDI  ++  +K+   V   + F+ F +    + +  C    +QS EY+ C IK 
Sbjct:   726 NYFAHQEDIDVLVEGIKLAINVSNTQAFQRFGSRLHNIPLPGCRHLPFQSNEYWACCIKE 785

Query:   483 LSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLA 542
              + T  HP GT RMGP  D  AVV P  RV G S +RVV   ++P  +  + +A  + + 
Sbjct:   786 FTFTIYHPAGTCRMGPSWDVTAVVDPRLRVYGVSGVRVVDASIMPTIVNGNPNAPVIAIG 845

Query:   543 ERCATFIQ 550
             E+ +  I+
Sbjct:   846 EKASDLIK 853

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 152/548 (27%), Positives = 262/548 (47%)

Query:    13 SVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLG 72
             +VL+LEAG D    T +P M    +Q SK+DW +  E + +  L ++       + +VLG
Sbjct:    85 NVLLLEAGGDETELTDVPLM-AGYLQLSKIDWQYKTEPSGTSCLAMQGGRCNWPRGKVLG 143

Query:    73 GSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXXXXXXXXXXXXX 132
             GSS++N M++ RGS++DY+ WE +    W+Y D  A+Y      K +             
Sbjct:   144 GSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRD--ALYYF---KKSEDNTNQYLANTPYH 198

Query:   133 DNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMI 192
                G              L ++F +A  ++G+++ D        G        + G R  
Sbjct:   199 ATGGYLTVGEAPYHTP--LAASFVEAGVEMGYENRD-LNGEKMTGFMIAQGTTRRGSRCS 255

Query:   193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
              S  FLR  + +  + +S NS VT++  D       GVEF   Q K   V A +EVVL+ 
Sbjct:   256 TSKAFLRPARLRPNLHISMNSHVTRIMIDPVTKLAFGVEFVKDQ-KLYHVRATKEVVLSG 314

Query:   253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS-- 310
              S+NS ++L  SGVG    L+K+ IPL+K L  VG+ L  H    GL++   + PVS   
Sbjct:   315 GSVNSPQLLMLSGVGPRKELAKHRIPLIKEL-SVGENLQDHIGLGGLTFLVNQ-PVSIVE 372

Query:   311 ---YTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNP-DVAVTQYYFPAQDTLFLR 366
                +T++ ++ +Y+    G  T +G    + Y++T +  +  D    +++F +  T    
Sbjct:   373 NRFHTMSTVL-QYVVFGQGPLTILGGVEGLAYVNTKYANSSLDWPDIEFHFVSGSTNSDG 431

Query:   367 GHL--KAWNVNDDLVER-FVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
             G    KA  + D      F  +N      II ++ L P++ G + + S +P   P I +P
Sbjct:   432 GSQLRKAHGLTDAFYRAVFEPINNRDAWSIIPML-LRPRSVGNIRLRSGNPFDYPYI-FP 489

Query:   424 LY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKY 482
              Y T++ D+K ++  VK+   +   +  + F +    +    C +    ++ ++ C ++ 
Sbjct:   490 NYLTDDFDMKTLIEGVKIAVALSLTKAMQRFGSRISSIRWPGCEQVPLFTDAFWECMVRR 549

Query:   483 LSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLA 542
              ++T  HP GT +MGP  D  AVV    RV G   LRV+   ++P  +  +++A  +M+A
Sbjct:   550 YTSTIYHPVGTCKMGPYWDKDAVVDAKLRVYGIRGLRVIDASIMPKLVSANTNAPVIMIA 609

Query:   543 ERCATFIQ 550
             E+ +  I+
Sbjct:   610 EKGSDMIK 617

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 145/560 (25%), Positives = 266/560 (47%)

Query:     1 CLTAKLLAQ-SGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
             C+ A  L++ S  SVL+LEAG      + +P +     Q ++ +WG+  E       GLK
Sbjct:    60 CVMANRLSEISSASVLLLEAGDQETFISDVP-LTAALTQMTRYNWGYKAEPTEHACQGLK 118

Query:    60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
               V    + R +GG+S+IN M++ RG + DY+ W   N +GW+Y ++   + + ER  + 
Sbjct:   119 GGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIGIP 178

Query:   120 XXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHV-GI 178
                            +G             LL++ F K+  ++G++  D     +H+ G 
Sbjct:   179 ELYKSPYHG-----RNGQLDVQYTDYRS-QLLKA-FLKSGREMGYEITDPN--GEHLMGF 229

Query:   179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE-TKTKVTGVEFRNPQG 237
             A     +++G+R   S  F++ + ++  + +S  S VT+L  D  TKT  TGVEF   + 
Sbjct:   230 ARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPITKT-ATGVEFVKQRQ 288

Query:   238 KTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 297
             + + V A +EV+L+A +I S ++L  SG+G A  L ++NI ++++LP VG  L  H    
Sbjct:   289 RYV-VRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLP-VGYNLQDHITLN 346

Query:   298 GLSYTFTKTPVS-SYTINEI-IYEYLTQRTGRFTDIGMSNFIGYLDTD---F-KGNPDVA 351
             GL +    + V+ +  +N   I+ Y+    G +T  G +    ++ T    F K  PD+ 
Sbjct:   347 GLVFVVNDSTVNDARLLNPSDIFRYIFAGQGPYTIPGGAEAFAFVRTPSSKFAKDYPDME 406

Query:   352 VTQYYFPAQDTLFLRGHLK-AWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEIN 410
             +           F  G ++    + D+  +        K    +  V L PK+ G + + 
Sbjct:   407 LVLGAGSLSGDRF--GTMRNLLGITDEFYDYMFGDLQSKETFGLVPVLLRPKSRGRISLR 464

Query:   411 SNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
             S +P   P +        +D++ ++  ++M+ ++ + +      T         C   K+
Sbjct:   465 SRNPFHWPRMEPNFMQHPDDVRAMIEGIEMILKLSRSKPMAKMGTRFHDRPFPGCENLKF 524

Query:   471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
              SE Y++C ++   ++  H +GT +MGP +D  +VV    R++G   LRVV   V+P   
Sbjct:   525 ASEAYWKCCLRRYGSSLQHQSGTCKMGPATDNTSVVDAQLRIHGIRGLRVVDASVLPNVP 584

Query:   531 VTDSSAVALMLAERCATFIQ 550
                ++A+ +M+AE+    I+
Sbjct:   585 AGHTNAIVIMVAEKAGDMIK 604

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 150/565 (26%), Positives = 258/565 (45%)

Query:     2 LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
             L A+L      SV ++EAG    I+   P +    +Q +  +WG+          G+ +N
Sbjct:    72 LAARLSENPQVSVALIEAGGVENIAHLTPVV-AGYLQQTSSNWGYKSVPQKLSCHGMNNN 130

Query:    62 VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXX 121
                L + ++LGG+S IN MI++RG++ D++ W      GW+Y ++   + R E  +L   
Sbjct:   131 ECALPRGKILGGTSSINYMIYNRGNRRDFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGL 190

Query:   122 XXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPP 181
                         N               ++   F +A  + G    D +     +G++  
Sbjct:   191 EQSPYH------NHSGPLSVEYVRFRSQMV-DAFVEASVESGLPRTD-YNGESQLGVSYV 242

Query:   182 MYYLKDGQRMIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
                  +G+R  A S +++ ++D ++ +Q+   S+VT++  DE      GVEF   + K  
Sbjct:   243 QANTLNGRRHSAYSAYIKPVRDLRSNLQIFTFSQVTRILIDEATKSAYGVEFHY-KNKAY 301

Query:   241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
                A +EV+L+A S NS ++L  SG+G    L    IPL+K LP VGKR+  H   FG +
Sbjct:   302 TFKARKEVILSAGSFNSPQLLMLSGIGPEDNLRGIGIPLIKALP-VGKRMFDHMCHFGPT 360

Query:   301 YTFTKTPVSSYTIN----EIIYEYLTQRTG-RFTDIGMSNFIGYLDTDFKGN-----PDV 350
             +    T  +++T      E+I   L      R + IG    + +L T  + N     PD+
Sbjct:   361 FVTNTTGQTTFTSRVTPAELISFLLAGNPATRMSSIGGVEALAFLKTQ-RSNLPNDWPDI 419

Query:   351 A---VTQYYFPAQDT-LFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGV 406
                 VT      + T L L  + K   + D +     +   D   L+I  +   PK+ G 
Sbjct:   420 ELIMVTGSLASDEGTGLKLGANFKD-EIYDRMYRELAQAQQDHFTLLI--MQFHPKSVGR 476

Query:   407 VEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECA 466
             + +   +P   P I    +  EED++ +L  +K   R+++    +      ++  +  C 
Sbjct:   477 LWLKDRNPLGWPKIDPKYFVAEEDVEYLLDGIKASLRIIEMPAMQRIGARLLKRTVPGCE 536

Query:   467 KCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVI 526
               ++ S++Y+RC+I+ LS T +H   T RMG  SDP  VV    +V+G   LRVV   +I
Sbjct:   537 GHQFASDDYWRCSIRTLSYTLHHQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTSII 596

Query:   527 PVEMVTDSSAVALMLAERCATFIQS 551
             P      ++A A M+ E+ A  I++
Sbjct:   597 PFPPTAHTNAAAFMIGEKAADMIRT 621

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 9.5e-47, P = 9.5e-47
 Identities = 138/546 (25%), Positives = 250/546 (45%)

Query:    14 VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
             +L+LEAG      + +P +    +  SK+DW +  +  P+    +KD      + +VLGG
Sbjct:   121 ILLLEAGGHETEISDVPLL-SLYLHKSKMDWKYRTQPQPTACQAMKDKRCCWTRGKVLGG 179

Query:    74 SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDXXXXXXXXXXXXXD 133
             SS++N M++ RG++ D+++W      GW+Y D+   + + E    D              
Sbjct:   180 SSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSE----DQRNPYLARNKRYHG 235

Query:   134 NDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIA 193
               G              +   F +A E++G+   D        G     + ++ G R   
Sbjct:   236 TGGLWTVQDAPYNTP--IGPAFLQAGEEMGYDIVDV-NGEQQTGFGFYQFNMRRGSRSST 292

Query:   194 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 253
             +  FLR  + +  + V+  S VTK+  D    + TGV+F    G+   V A REV+L+A 
Sbjct:   293 AKSFLRPARLRPNLHVALFSHVTKVLTDPHTKRATGVQFIR-DGRLQNVYATREVILSAG 351

Query:   254 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVS---- 309
             +I S  ++  SG+G    L +  IPLV++LPGVG+ L  H    G+++     P+S    
Sbjct:   352 AIGSPHLMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAVGGIAFLIDY-PISIVMK 410

Query:   310 -SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRG- 367
                 IN  +   +T+     + IG+   + +++T +    D      +     ++   G 
Sbjct:   411 RMVNINTALRYAITEDGPLTSSIGLEA-VAFINTKYANASDDWPDMNFMMTSASVMSDGG 469

Query:   368 -HLK-AWNVNDDLVER-FVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPL 424
               +K A  + D+  +  F +VN ++ +  +  + L PK+ G +++ S +P + P + +  
Sbjct:   470 SQVKTAHGLTDEFYQEVFGEVN-NRDVFGVFPMMLRPKSRGYIKLASKNPLRYPLLYHNY 528

Query:   425 YTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLS 484
              T  +D+  +   VK    + + +  K F        +  C      +++Y+ C I+  +
Sbjct:   529 LTHPDDVNVLREGVKAAVAMGETQAMKRFGARYWNKPVPNCKHLTLYTDDYWNCFIRQYT 588

Query:   485 TTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAER 544
              T  H +GT +MGPP+DP AVV P  RV G   LRV+   ++P     +  A  +M+ E+
Sbjct:   589 MTIYHMSGTAKMGPPTDPWAVVDPQLRVYGIPGLRVIDASIMPAITNGNIHAPVVMIGEK 648

Query:   545 CATFIQ 550
              A  I+
Sbjct:   649 GADMIK 654

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8GBX9	BETA_SERP5	1, ., 1, ., 9, 9, ., 1	0.2452	0.8933	0.9207	yes	N/A
Q5HL11	BETA_STAEQ	1, ., 1, ., 9, 9, ., 1	0.2736	0.8758	0.8758	yes	N/A
Q66D54	BETA_YERPS	1, ., 1, ., 9, 9, ., 1	0.2491	0.8758	0.8835	yes	N/A
A6U6Y8	BETA_SINMW	1, ., 1, ., 9, 9, ., 1	0.2616	0.8758	0.9125	yes	N/A
A7MFA8	BETA_CROS8	1, ., 1, ., 9, 9, ., 1	0.2698	0.8741	0.8944	yes	N/A
B1LIJ7	BETA_ECOSM	1, ., 1, ., 9, 9, ., 1	0.2663	0.8741	0.8896	yes	N/A
A6T613	BETA_KLEP7	1, ., 1, ., 9, 9, ., 1	0.2616	0.8881	0.9169	yes	N/A
Q8UH55	BETA_AGRT5	1, ., 1, ., 9, 9, ., 1	0.2605	0.8566	0.8925	yes	N/A
Q6UPE0	CHDH_RAT	1, ., 1, ., 9, 9, ., 1	0.2455	0.8793	0.8397	yes	N/A
C3MIE4	BETA_RHISN	1, ., 1, ., 9, 9, ., 1	0.2678	0.8723	0.9089	yes	N/A
B7N8L3	BETA_ECOLU	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
Q4ZM63	BETA_PSEU2	1, ., 1, ., 9, 9, ., 1	0.2557	0.8741	0.8802	yes	N/A
B7M2V5	BETA_ECO8A	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
Q0T7N0	BETA_SHIF8	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
Q8NE62	CHDH_HUMAN	1, ., 1, ., 9, 9, ., 1	0.2429	0.8828	0.8501	yes	N/A
Q88AE7	BETA_PSESM	1, ., 1, ., 9, 9, ., 1	0.2574	0.8741	0.8802	yes	N/A
P54223	BETA_RHIME	1, ., 1, ., 9, 9, ., 1	0.2616	0.8758	0.9125	yes	N/A
B1J0W6	BETA_ECOLC	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B2K8U4	BETA_YERPB	1, ., 1, ., 9, 9, ., 1	0.2491	0.8758	0.8835	yes	N/A
A7ZWV4	BETA_ECOHS	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B5Z1R0	BETA_ECO5E	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8879	yes	N/A
A7ZI50	BETA_ECO24	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B7MCD0	BETA_ECO45	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8879	yes	N/A
Q1RFM3	BETA_ECOUT	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8879	yes	N/A
B1XE52	BETA_ECODH	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B7UJG4	BETA_ECO27	1, ., 1, ., 9, 9, ., 1	0.2640	0.8723	0.8974	yes	N/A
B6I074	BETA_ECOSE	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
Q8FKI9	BETA_ECOL6	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B7L439	BETA_ECO55	1, ., 1, ., 9, 9, ., 1	0.2658	0.8723	0.8974	yes	N/A
B3PTE0	BETA_RHIE6	1, ., 1, ., 9, 9, ., 1	0.2567	0.8776	0.9143	yes	N/A
Q0TKW1	BETA_ECOL5	1, ., 1, ., 9, 9, ., 1	0.2680	0.8741	0.8992	yes	N/A
Q8CMY2	BETA_STAES	1, ., 1, ., 9, 9, ., 1	0.2736	0.8758	0.8758	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	572
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-64
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	2e-62
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	5e-60
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	5e-33
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	5e-25
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	1e-17
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	7e-10

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  219 bits (559), Expect = 3e-64
 Identities = 153/560 (27%), Positives = 238/560 (42%), Gaps = 57/560 (10%)

Query: 1   CLTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
            + A  L+ +G SVL+LEAG  D      +PA +   +   + DWGF  E  P     L+
Sbjct: 20  SVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLR 75

Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKL 118
              +   + +VLGGSS IN M++ RG   D++ W +     GW Y D+   + R E    
Sbjct: 76  GRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLG 135

Query: 119 DTV-RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
                  T          G + ++  ++   N +   F +A E +GF +      +D  G
Sbjct: 136 VGGQDLRTWHGG-----GGPLPVSPPRSP--NPIARAFIEAGEQLGFPTTPDPNGADQEG 188

Query: 178 IAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG 237
             P    + +G+R  A+  +L+    +  + +   + V ++  +    +  GVE     G
Sbjct: 189 FGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDG 246

Query: 238 KTIKV-NANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP-- 294
            TI+   A REVVLAA +INS ++L  SG+G A  L ++ I +V  LPGVG+ L  H   
Sbjct: 247 GTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI 306

Query: 295 -MFFGLSYTFTKTPVSSYTINEI-IYEYLTQRTG-RFTDIGMSNFIGYLDTDFKGNPDVA 351
            + F  +     + +S ++   I    YL  R G   T+     F+       +  PD  
Sbjct: 307 YVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFV-RSGPAGEY-PDG- 363

Query: 352 VTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
             QY+F             A       +            L +G   + PK+ G V + S
Sbjct: 364 --QYHF-------------APLP----LAIRAAGAEHGFTLHVGP--MRPKSRGSVTLRS 402

Query: 412 NDPTKNPTIRYPLYT-EEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
            DP   P I  P Y   E D       +++   ++             + E+      + 
Sbjct: 403 PDPDNRPVID-PNYLSAEGDRAIFRAGIRLTREIIGQPALDAR----RKAELA--PGPRV 455

Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVV-GPDFRVNGFSNLRVVGEPVIPVE 529
            ++E    AI++L+ T  HP GT RMG  SDP AVV  P  RV+G  NLRVV   V+P  
Sbjct: 456 TTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTS 513

Query: 530 MVTDSSAVALMLAERCATFI 549
              + +   + LAER A  I
Sbjct: 514 TGVNPNLTIIALAERAADHI 533

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  213 bits (545), Expect = 2e-62
 Identities = 154/554 (27%), Positives = 247/554 (44%), Gaps = 69/554 (12%)

Query: 13  SVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQAR 69
           SVL+LEAG  D P      +PA       + + +W +  E  P     + +  V   + +
Sbjct: 25  SVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGHARGK 80

Query: 70  VLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESE 128
           VLGGSS IN MI+ RG+  DYE+W +   M  W Y+D    Y R+E T           E
Sbjct: 81  VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFG--------GE 132

Query: 129 TVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDG 188
                +DG + +     +  N L   F +A  + G+            G  P    + +G
Sbjct: 133 KPYRGHDGPIKVRRGPAD--NPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNG 190

Query: 189 QRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREV 248
           +R+ A+  +L     +  ++V   + VTK+ F+    + TGVEF+    K     AN+EV
Sbjct: 191 RRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKE-HTEANKEV 247

Query: 249 VLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 308
           +L+A +INS ++LQ SG+GDA  L +  I    +LPGVG+ L  H +   + +   + PV
Sbjct: 248 ILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDH-LEVYVQHACKQ-PV 305

Query: 309 SSYT------INEIIYEYLTQRTGRFTDIGMSNFI---GYLDTDFKGNPDVAV--TQYYF 357
           S Y          I  ++L  R G     G SN     G++    + N DV     QY+F
Sbjct: 306 SLYPSLNWLKQPFIGAQWLFGRKG----AGASNHFEGGGFV----RSNDDVDYPNIQYHF 357

Query: 358 -PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-LIIGLVSLCPKAEGVVEINSNDPT 415
            P                   +  R+    A K     + +  +   + G V+I S DP 
Sbjct: 358 LP-------------------VAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPF 398

Query: 416 KNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEY 475
           + P I +   + EED +    A+++   ++K +    ++      EI    +   Q++E 
Sbjct: 399 EKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG----EISPGPEV--QTDEE 452

Query: 476 YRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
               ++    T  HP GT +MGP SD ++VV P+ RV+G   LRVV   ++P     + +
Sbjct: 453 IDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLN 512

Query: 536 AVALMLAERCATFI 549
           A  +M+ E+ A  I
Sbjct: 513 APVIMMGEKAADII 526

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  208 bits (532), Expect = 5e-60
 Identities = 153/571 (26%), Positives = 246/571 (43%), Gaps = 82/571 (14%)

Query: 2   LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           L  +L      SVL+LEAG PD        +PA     +Q  + +W +  E+ P   +  
Sbjct: 20  LANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAY--ETEPEPHMNN 77

Query: 59  KDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIER 115
           +    R+   R  VLGGSS IN M++ RG+  DY+ W  L  + GW+Y+D    + + E 
Sbjct: 78  R----RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAET 133

Query: 116 TKL--DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
                D  R            DG +++T  K    N L   F +A    G+   D     
Sbjct: 134 RDGGEDDYR----------GGDGPLSVTRGK-PGTNPLFQAFVEAGVQAGYPRTDDLNGY 182

Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
              G  P    + +G+R  A+  +L     +  + +  ++   ++ F+    +  GVE+ 
Sbjct: 183 QQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYE 240

Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
              G      A REV+L+A +INS ++LQ SG+G A  L +  IP+V +LPGVG+ L  H
Sbjct: 241 R-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDH 299

Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSN------FIGYLD 341
            +   + Y   + PVS Y   +      I  E+L   TG    +G SN      FI    
Sbjct: 300 -LEVYIQYECKQ-PVSLYPALKWWNKPKIGAEWLFTGTG----LGASNHFEAGGFI---- 349

Query: 342 TDFKGNPDVAV--TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVS 398
              +    V     QY+F P      +R                  V        +G   
Sbjct: 350 ---RSRAGVDWPNIQYHFLPVA----IRYDGSN------------AVKGHGFQAHVG--P 388

Query: 399 LCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSV 458
           +   + G V++ S DP  +P+I +   + E+D +    A+++   +M       ++    
Sbjct: 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGR-- 446

Query: 459 QLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNL 518
             EI   A    Q++E     ++  + T  HP+ T +MG   DP+AVV P+ RV+G   L
Sbjct: 447 --EISPGADV--QTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGL 500

Query: 519 RVVGEPVIPVEMVTDSSAVALMLAERCATFI 549
           RVV   ++P     + +A  +M+AE+ A  I
Sbjct: 501 RVVDASIMPTITNGNLNAPTIMIAEKAADLI 531

Length = 560

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  131 bits (332), Expect = 5e-33
 Identities = 127/557 (22%), Positives = 200/557 (35%), Gaps = 92/557 (16%)

Query: 2   LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDS-KLDWGFVLESNPSYGLGLKD 60
           + A+L     C+V +LEAGP        P+     + D  +L  G        YG+ L D
Sbjct: 15  VAARLSEDPSCTVTVLEAGP-GYRD---PSRLPAQLTDGLRLPIGPASPVVWRYGVELTD 70

Query: 61  NVVRLNQ---ARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIER-T 116
              R +     RVLGGS  +N     R    D++ W    + GW++ D+   +  IE   
Sbjct: 71  GPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDL 127

Query: 117 KLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSD-- 174
             D     T              I   +T +++ + + F  A    GF        S   
Sbjct: 128 DFDGPLHGTAG-----------PIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGPD 176

Query: 175 -HVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
              G+      +  G+R+  +  +L     +  + V  ++ V ++ F  + T+  GVE  
Sbjct: 177 APTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILF--SGTRAVGVEVL 234

Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
              G    + A+R VVL A ++ S  +L  SG+G A  L    I +V +LP VG     H
Sbjct: 235 GDGGPRT-LRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDH 291

Query: 294 PMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT 353
           P  + L Y +  T     T   +  E +                  L+T      D+ + 
Sbjct: 292 PE-WVLPYRWRPTHDRPDTSPVL--ETV------------------LNTA-----DIEIR 325

Query: 354 QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSND 413
            Y        F             LV        D P L + L+   P + G + + S D
Sbjct: 326 PYTAG-----F-----------TALVP---GSPRDDPHLGVALMR--PHSRGRIRLASAD 364

Query: 414 PTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSE 473
           P   P I +   +   D   +     +   ++                 +     +    
Sbjct: 365 PADPPRIEHRYDSSAADRAALRAGAALAHELLG--------------SPELGPLLEPAVR 410

Query: 474 EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTD 533
           E     +     T+ H  G+ RMG   DP AVV    RV G   L VV   ++PV     
Sbjct: 411 EGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRG 470

Query: 534 SSAVALMLAERCATFIQ 550
             A A+M+AER A F+ 
Sbjct: 471 PHATAVMVAERAAEFLG 487

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score =  100 bits (251), Expect = 5e-25
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL 460
           P++ G V ++S+DP   P I     ++  D+  +  A+++  R++               
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILA-AALVELTP----G 55

Query: 461 EIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRV 520
            ++        S++     I+  + T+ HP GT RMG   D   VV PD RV+G  NLRV
Sbjct: 56  PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDD-GVVDPDLRVHGVDNLRV 114

Query: 521 VGEPVIPVEMVTDSSAVALMLAERC 545
           V   V P     + +     LAER 
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139

This domain found associated with pfam00732. Length = 139

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 55/238 (23%), Positives = 87/238 (36%), Gaps = 49/238 (20%)

Query: 65  LNQARVLGGSSIINDMIHDRGSQYDYERWE---GLNMTGWTYSDMDAIYTRIERTKLDTV 121
           L     +GG S +N     R      + W    GL   GW Y D      ++E       
Sbjct: 21  LPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLE--GWGYDDYLPYMDKVE------- 71

Query: 122 RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKS---PDTFTVSDHVGI 178
                         G + +TT   E  + L     KA E++G+     P       + G 
Sbjct: 72  --------------GPLGVTTKGIE-ESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGF 116

Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
                    G +   +  +LR   ++N +++   ++  K+       +  GVE R   G 
Sbjct: 117 C--GLGCPTGAKQSTARTWLRPALERN-LRILTGAKAEKIIILGRGGRAVGVEAR-DGGG 172

Query: 239 TIKVN--ANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
            IK    A +EVV+AA ++N+  +L +SG+G                  VGK L LHP
Sbjct: 173 GIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PVGKNLQLHP 217

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 90/396 (22%), Positives = 160/396 (40%), Gaps = 87/396 (21%)

Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD--ETKTKVTGVEFRNPQGKT----IK 241
           G+R  A+   L A  + N ++V  ++ V K+ FD    + + TGV F++  G      + 
Sbjct: 218 GRRHTAAE--LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLS 275

Query: 242 VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSY 301
            N   E++L+A +I S ++L  SG+G    L K+ IP+V +   VGK ++ +PM     +
Sbjct: 276 NNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPM--NSIF 333

Query: 302 TFTKTPVSSYTINEI-IYE---YLTQRTGRF--------TDIG-MSNFIGYLDTDFKGNP 348
             +K PV    I  + I +   Y+   +G F           G MS  IG L T      
Sbjct: 334 VPSKAPVEQSLIQTVGITKMGVYIEASSG-FGQSPDSIHCHHGIMSAEIGQLST------ 386

Query: 349 DVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKP--------IL--IIGLVS 398
                    P Q T              + ++ ++    + P        IL  I G   
Sbjct: 387 -------IPPKQRTP-------------EAIQAYIHRKKNLPHEAFNGGFILEKIAG--- 423

Query: 399 LCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTN-- 456
             P + G + + + +   NP++ +  +   +D++  +  ++ +++++K   F NF T   
Sbjct: 424 --PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNF-TQCD 480

Query: 457 ----------SVQLEIKECAKCKYQSEEYYR-CAIKYLSTTTNHPTGTLRMGPPSDPLAV 505
                     SV+  I    K    ++   + C  K    T  H  G   +G       V
Sbjct: 481 KQTMEKVLNMSVKANINLIPKHTNDTKSLEQFC--KDTVITIWHYHGGCHVG------KV 532

Query: 506 VGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALML 541
           V  +++V G S LRV+          T+  A  +M+
Sbjct: 533 VDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMM 568

Length = 587

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	572
KOG1238|consensus	623		100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PLN02785	587	Protein HOTHEAD	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	100.0
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.16
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.1
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	96.93
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.83
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.7
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.35
PRK07121	492	hypothetical protein; Validated	96.31
PRK08274	466	tricarballylate dehydrogenase; Validated	96.28
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.26
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.11
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	95.88
KOG2404|consensus	477		95.83
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.63
PRK12839	572	hypothetical protein; Provisional	95.56
PRK06175	433	L-aspartate oxidase; Provisional	95.47
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.38
PLN02815	594	L-aspartate oxidase	95.36
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.32
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.3
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.28
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	95.16
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.02
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.0
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.98
PRK07395	553	L-aspartate oxidase; Provisional	94.98
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	94.88
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	94.77
PRK09077	536	L-aspartate oxidase; Provisional	94.71
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.62
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	94.58
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	94.56
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.51
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	94.45
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	94.37
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	94.34
PRK13977	576	myosin-cross-reactive antigen; Provisional	94.24
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	94.14
PRK08275	554	putative oxidoreductase; Provisional	94.1
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	93.97
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.96
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	93.76
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	93.73
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	93.64
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.58
COG0579	429	Predicted dehydrogenase [General function predicti	93.53
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	93.47
PRK08071	510	L-aspartate oxidase; Provisional	93.43
PRK07512	513	L-aspartate oxidase; Provisional	93.39
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	93.38
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	93.33
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	93.12
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	93.04
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	92.95
PLN02464	627	glycerol-3-phosphate dehydrogenase	92.71
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.55
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	92.55
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	92.52
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.46
PRK05257	494	malate:quinone oxidoreductase; Validated	92.16
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	92.01
PRK13339	497	malate:quinone oxidoreductase; Reviewed	91.73
PTZ00383	497	malate:quinone oxidoreductase; Provisional	90.95
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	90.82
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	90.54
PRK07804	541	L-aspartate oxidase; Provisional	90.53
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	90.3
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	89.17
PLN02661	357	Putative thiazole synthesis	88.27
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	87.85
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	87.73
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	87.45
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	87.36
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	86.49
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	85.39
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	85.28
KOG0042|consensus	680		84.97
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	84.63
KOG4254|consensus	561		84.59
PRK06185	407	hypothetical protein; Provisional	84.42
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	84.03
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	83.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	83.12
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	83.09
PRK07208	479	hypothetical protein; Provisional	82.53
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	82.43
COG2081	408	Predicted flavoproteins [General function predicti	80.63
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	80.44
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	80.25

>KOG1238|consensus

Probab=100.00  E-value=5.8e-107  Score=836.73  Aligned_cols=539  Identities=28%  Similarity=0.461  Sum_probs=482.6

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhccc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDM   80 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~   80 (572)
                      |+|+||||++..||||||||+..+...++|..... ++.+.++|.|.++|+...|+++.++.+.|+|||+|||||.+|+|
T Consensus        71 vlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~-~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m  149 (623)
T KOG1238|consen   71 VLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAAN-LQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAM  149 (623)
T ss_pred             HHHHhhccCCCceEEEEecCCCCcccccchHHHHH-hccccccccCcCccChhhhhhhcCCceecCccceecccccccce
Confidence            68999999999999999999998777788855555 88899999999999999999999999999999999999999999


Q ss_pred             eeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHHHH
Q psy10663         81 IHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFE  160 (572)
Q Consensus        81 ~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a~~  160 (572)
                      +|.|+++.|||+|++.|+++|+|+++.|||+|+|+...+....   .+  +|+..||+.++...+ .++ ....|.++..
T Consensus       150 ~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~---~~--y~~~~g~~~ve~~~~-~~~-~~~~~~~ag~  222 (623)
T KOG1238|consen  150 FYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL---TP--YHGAGGPLLVEAGVY-PNN-LFTAFHRAGT  222 (623)
T ss_pred             EEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc---Cc--ccccCCcceeccccc-cCc-hhhHhHHhHH
Confidence            9999999999999999999999999999999999998765543   45  899999999998888 778 9999999999


Q ss_pred             HcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcC-CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCC-Cc
Q psy10663        161 DIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GK  238 (572)
Q Consensus       161 ~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~-~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~-g~  238 (572)
                      ++|.+..|+ |+..+.|+...+.++++|.|+|+..+|+.++.. |+||.|..++.|++|.+|+.+.++.||++. .+ |+
T Consensus       223 e~G~~~~D~-nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~-~~~~~  300 (623)
T KOG1238|consen  223 EIGGSIFDR-NGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFV-RDGGK  300 (623)
T ss_pred             hcCCCccCC-CCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEE-ecCce
Confidence            999777799 999999999999999999999999999999877 899999999999999999888999999999 55 89


Q ss_pred             eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCC---CCccchHH
Q psy10663        239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP---VSSYTINE  315 (572)
Q Consensus       239 ~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~---~~~~~~~~  315 (572)
                      +++|+|+||||||||||+||||||+|||||+++|+++|||++.|||+||+||+||+..+ +......+.   ........
T Consensus       301 ~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~~~~~~~~~~~~~  379 (623)
T KOG1238|consen  301 EHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNPVELSLIRLVGIT  379 (623)
T ss_pred             eeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCCccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999996 544444443   22233456


Q ss_pred             HHHHHHHcCCCccccCCcccEEEEEeCCCC----CCCCeeEEeeccC-CCchhhhhhhhccccCchhHHHHHhhcCCCCC
Q psy10663        316 IIYEYLTQRTGRFTDIGMSNFIGYLDTDFK----GNPDVAVTQYYFP-AQDTLFLRGHLKAWNVNDDLVERFVKVNADKP  390 (572)
Q Consensus       316 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (572)
                      .+.+|.....||+...+ .+..+|+++...    .+||+++++.... .++.  ...+....+   ++++.++.......
T Consensus       380 ~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~--~~~~~~~~~---~~y~~~~~~~~~~~  453 (623)
T KOG1238|consen  380 TVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDG--LTALRKALG---EIYQALFGELTNSD  453 (623)
T ss_pred             HHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccc--hhhhhhhcc---hHHHHhhhhhhcCc
Confidence            67899999999999876 678999988754    3899998877765 2222  122222222   56666666555555


Q ss_pred             eEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCCC
Q psy10663        391 ILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY  470 (572)
Q Consensus       391 ~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~  470 (572)
                      .+.++..+++|.|+|+|+|.|+||++.|.|++||+.+|+|++.++++++.+.++.++.+|++++...+..+.|+|+....
T Consensus       454 ~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~  533 (623)
T KOG1238|consen  454 SFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAF  533 (623)
T ss_pred             eeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccC
Confidence            67788888999999999999999999999999999999999999999999999999999999999999989999999899


Q ss_pred             CCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663        471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ  550 (572)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~  550 (572)
                      .+|++|+||+|....+.||++|||+||+..||++|||+++||||++||||+|||+||.+|++||++|+||||||+||.|+
T Consensus       534 ~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik  613 (623)
T KOG1238|consen  534 LSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIK  613 (623)
T ss_pred             CCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc
Q psy10663        551 SPVNVT  556 (572)
Q Consensus       551 ~~~~~~  556 (572)
                      +++...
T Consensus       614 ~~~~~~  619 (623)
T KOG1238|consen  614 EEWLAN  619 (623)
T ss_pred             HHhhhc
Confidence            987543

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=1.8e-88  Score=733.23  Aligned_cols=507  Identities=27%  Similarity=0.425  Sum_probs=406.4

Q ss_pred             CccccccCCCCCeEEEEcccCCCC---CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP---ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      |+|+||||+++.||||||+|+...   .....|..+...+..+.++|.|.+.|+..    ..++.+.+.+||+|||||.|
T Consensus        13 vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~g~~lGGss~i   88 (532)
T TIGR01810        13 VLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGHARGKVLGGSSSI   88 (532)
T ss_pred             HHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEeeecccccCCCCCE
Confidence            589999998458999999998642   23344543322123445799999988874    56788999999999999999


Q ss_pred             ccceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHH
Q psy10663         78 NDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFS  156 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~  156 (572)
                      |+|+|+|+++.||+.|+. .|+++|+|++|+|||+|+|+++...      .+  .|+.+||+.+..++. ..+ ..+.|.
T Consensus        89 n~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~------~~--~~g~~G~~~v~~~~~-~~~-~~~~~~  158 (532)
T TIGR01810        89 NGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE------KP--YRGHDGPIKVRRGPA-DNP-LFQAFI  158 (532)
T ss_pred             eeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC------cc--cCCCCCCEEEecCCC-CCH-HHHHHH
Confidence            999999999999999998 6889999999999999999987532      23  799999999987766 677 889999


Q ss_pred             HHHHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC
Q psy10663        157 KAFEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP  235 (572)
Q Consensus       157 ~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~  235 (572)
                      ++++++|++.. ++ ++....|++.|...|.+|+|+++..+||+++.+++|++|+++++|+||+++  +++|+||++.+ 
T Consensus       159 ~a~~~~G~~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~-  234 (532)
T TIGR01810       159 EAGVEAGYNKTPDV-NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKK-  234 (532)
T ss_pred             HHHHHcCCCccCCC-CCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEe-
Confidence            99999999877 55 777777888888888999999999999999878999999999999999998  57999999984 


Q ss_pred             CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCC-CCcc---
Q psy10663        236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP-VSSY---  311 (572)
Q Consensus       236 ~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~-~~~~---  311 (572)
                      .+...++.+.|+||||||||+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.+.++.+. ....   
T Consensus       235 ~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~  313 (532)
T TIGR01810       235 GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPVSLYPSLNW  313 (532)
T ss_pred             CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCcccccccch
Confidence            34445554557999999999999999999999999999999999999999999999999984 888887653 1110   


Q ss_pred             -chHHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCC
Q psy10663        312 -TINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADK  389 (572)
Q Consensus       312 -~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (572)
                       .......+|.....|++.... ....+|...... ..|++++.+.+....            ..+.        .....
T Consensus       314 ~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~--------~~~~~  372 (532)
T TIGR01810       314 LKQPFIGAQWLFGRKGAGASNH-FEGGGFVRSNDDVDYPNIQYHFLPVAIR------------YDGT--------KAPKA  372 (532)
T ss_pred             hhhhHHHHHHHhcCCCCccccc-cceeEEEecCCCCCCCCeEEEEEeeeec------------cCCC--------CCCCC
Confidence             111123456666677765432 234456544321 145555543321100            0000        00011


Q ss_pred             CeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCC
Q psy10663        390 PILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK  469 (572)
Q Consensus       390 ~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~  469 (572)
                      ..+.+....++|.|+|+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++.+++.+...+.   .|   ...
T Consensus       373 ~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p---~~~  446 (532)
T TIGR01810       373 HGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SP---GPE  446 (532)
T ss_pred             CcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CC---CCC
Confidence            224555667899999999999999999999999999999999999999999999999887776533222   12   234


Q ss_pred             CCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHh
Q psy10663        470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFI  549 (572)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I  549 (572)
                      ..++++|++|+|....+.+|++||||||++++++||||++|||||++||||||+||||+++++||++|+||||||+||+|
T Consensus       447 ~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I  526 (532)
T TIGR01810       447 VQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADII  526 (532)
T ss_pred             CCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999997445689999999999999999999999999999999999999999999999


Q ss_pred             hCCC
Q psy10663        550 QSPV  553 (572)
Q Consensus       550 ~~~~  553 (572)
                      +++.
T Consensus       527 ~~~~  530 (532)
T TIGR01810       527 RGKK  530 (532)
T ss_pred             hccC
Confidence            9865

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.2e-88  Score=738.32  Aligned_cols=506  Identities=25%  Similarity=0.426  Sum_probs=406.2

Q ss_pred             CccccccCCCCCeEEEEcccCCC---CCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDA---PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~---~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      ++|.||||++|++|||||+|+..   ....+.|..+...+..+.++|.|.+.|++.    ..++.+.+.+||+|||||.|
T Consensus        19 vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~g~~lGGsS~i   94 (560)
T PRK02106         19 VLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRRMECPRGKVLGGSSSI   94 (560)
T ss_pred             HHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCeeecccccccCCCCCc
Confidence            58999999679999999999764   223345543322123456799999888874    56778999999999999999


Q ss_pred             ccceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEcc-CCccChHHHHHH
Q psy10663         78 NDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTI-KTEKINLLRSTF  155 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~-~~~~~~~~~~~~  155 (572)
                      |+|+|+|+++.||+.|+.. |+++|+|++|+|||+|+|+++...      .+  .|+.+||+++..+ .+ .++ ..+.|
T Consensus        95 N~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~------~~--~~g~~gp~~~~~~~~~-~~~-~~~~~  164 (560)
T PRK02106         95 NGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE------DD--YRGGDGPLSVTRGKPG-TNP-LFQAF  164 (560)
T ss_pred             cceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC------cc--ccCCCCCEEEeCCCCC-CCH-HHHHH
Confidence            9999999999999999986 889999999999999999987321      23  7889999999865 33 677 88999


Q ss_pred             HHHHHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc
Q psy10663        156 SKAFEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN  234 (572)
Q Consensus       156 ~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~  234 (572)
                      .++++++|++.. +. +++.+.|++.|+.+|.+|.|+++..+||+++.+++|++|+++|+|+||+++  +++|+||++.+
T Consensus       165 ~~a~~~lG~~~~~~~-~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~  241 (560)
T PRK02106        165 VEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYER  241 (560)
T ss_pred             HHHHHHcCCCcCCCC-CCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEe
Confidence            999999999977 55 777788988888889999999999999999888999999999999999998  57999999986


Q ss_pred             CCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCC--C---
Q psy10663        235 PQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV--S---  309 (572)
Q Consensus       235 ~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~--~---  309 (572)
                      .++....+.| |+||||||||+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.+.++.+..  .   
T Consensus       242 ~~~~~~~~~a-k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~~~~~~~~~~~~~  319 (560)
T PRK02106        242 GGGRETARAR-REVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPVSLYPALK  319 (560)
T ss_pred             CCcEEEEEee-eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEEeCCCcccccccc
Confidence            5444444455 6999999999999999999999999999999999999999999999999995 8888776531  1   


Q ss_pred             ccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCC
Q psy10663        310 SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNAD  388 (572)
Q Consensus       310 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (572)
                      .........+|+..+.|++.... ....+|.+.... ..|++++.+.+...         .   ..+..       . ..
T Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~---------~---~~~~~-------~-~~  378 (560)
T PRK02106        320 WWNKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYHFLPVAI---------R---YDGSN-------A-VK  378 (560)
T ss_pred             hhhhhHHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEEEeeccc---------c---ccCCC-------C-CC
Confidence            11111223466666778765432 234456554321 24555543322110         0   00000       0 01


Q ss_pred             CCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccC
Q psy10663        389 KPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC  468 (572)
Q Consensus       389 ~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~  468 (572)
                      ...+.+...+++|.++|+|+|+++||++.|.|+++|+.++.|++.++++++++++++++.+++.+...+.   .|+   .
T Consensus       379 ~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~  452 (560)
T PRK02106        379 GHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPG---A  452 (560)
T ss_pred             CCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCC---c
Confidence            1235555677899999999999999999999999999999999999999999999999888776544332   222   2


Q ss_pred             CCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHH
Q psy10663        469 KYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF  548 (572)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~  548 (572)
                      ...+++++++|++....+++|++||||||+  |++||||++|||||++||||+|+||||+++++||++||||||||+||+
T Consensus       453 ~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~  530 (560)
T PRK02106        453 DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADL  530 (560)
T ss_pred             ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHH
Confidence            346788899999999889999999999996  457999999999999999999999999999999999999999999999


Q ss_pred             hhCCCC
Q psy10663        549 IQSPVN  554 (572)
Q Consensus       549 I~~~~~  554 (572)
                      |+++++
T Consensus       531 I~~~~~  536 (560)
T PRK02106        531 IRGRTP  536 (560)
T ss_pred             HhccCC
Confidence            999874

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-78  Score=647.93  Aligned_cols=505  Identities=27%  Similarity=0.416  Sum_probs=404.2

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC-CccccccchhhhcCC-CccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI-STAIPAMWHESIQDS-KLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN   78 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~-~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n   78 (572)
                      ++|+||| ++|++|||||+|+.... ...+|..+.. +... ..+|.|.+++++    +..++.+.++||++|||||.||
T Consensus        21 ~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~----~~~~r~~~~~rgk~lGGsS~in   94 (542)
T COG2303          21 VLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAF-LMNGPRYDWGFRTEPEP----HLRGRELAWPRGKVLGGSSSIN   94 (542)
T ss_pred             HHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhh-hccCcccCCccccCccc----CCCCccccccccCcccchhhhc
Confidence            5899999 67999999999987533 4566766655 4443 789999999888    3788999999999999999999


Q ss_pred             cceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHH
Q psy10663         79 DMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSK  157 (572)
Q Consensus        79 ~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~  157 (572)
                      +|+|+|+++.||+.|.. .|+++|+|+|++|||+++|++.......  ...  .|+..||+++..+.. ..+ +.+.|.+
T Consensus        95 g~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~--~~~--~~g~~gp~~~~~~~~-~~~-~~~a~~~  168 (542)
T COG2303          95 GMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQD--LRT--WHGGGGPLPVSPPRS-PNP-IARAFIE  168 (542)
T ss_pred             cceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCC--CCC--CcCCCCCccccCCCC-chH-HHHHHHH
Confidence            99999999999999987 4789999999999999999977543210  022  799999999987754 678 9999999


Q ss_pred             HHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC
Q psy10663        158 AFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG  237 (572)
Q Consensus       158 a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g  237 (572)
                      +.+++|++..+.+|+....|++.|+.+|.+|+|+++..+||.++.+++|++|++++.|++|+++  +++++||++...++
T Consensus       169 a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~  246 (542)
T COG2303         169 AGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDG  246 (542)
T ss_pred             HHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCC
Confidence            9999999988443888888888877666699999999999999999999999999999999999  78999999984333


Q ss_pred             c-eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCCCcc----c
Q psy10663        238 K-TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY----T  312 (572)
Q Consensus       238 ~-~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~----~  312 (572)
                      . ...+.+.++||||||+|+||+|||+||||+.+.+..+|+.++.++|+||+|||||.... +.+..+.......    .
T Consensus       247 ~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~~~~~~~~~~~~~~~  325 (542)
T COG2303         247 GTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFEATEPTNDSVLSLFS  325 (542)
T ss_pred             CceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hheeccCccccccccccc
Confidence            2 23444446999999999999999999999999999999999999999999999999994 7777665531100    0


Q ss_pred             hHHH-HHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCC
Q psy10663        313 INEI-IYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKP  390 (572)
Q Consensus       313 ~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (572)
                      .... ..+|...+.|+......  ..+|...... ..|+.++++...+...            .          ......
T Consensus       326 ~~~~~~~~~~~~~~G~~~~~~~--~~gf~~~~~~~~~p~~~~~~~~~~~~~------------~----------~~~~~~  381 (542)
T COG2303         326 KLGIGADRYLLTRDGPGATNHF--EGGFVRSGPAGEYPDGQYHFAPLPLAI------------R----------AAGAEH  381 (542)
T ss_pred             cccccceeEEeecCCCcccccc--cccccccCccccCCCcccccccccccc------------c----------ccccCC
Confidence            1111 12333445666554321  2235554433 2566666554432100            0          011234


Q ss_pred             eEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCCC
Q psy10663        391 ILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY  470 (572)
Q Consensus       391 ~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~  470 (572)
                      .+++.....+|.++|.|++++.||...|.|+++|..++.|+..+.++++..++++.+..+......+.   .|   ....
T Consensus       382 ~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~---~~~~  455 (542)
T COG2303         382 GFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---AP---GPRV  455 (542)
T ss_pred             ccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cC---CCcc
Confidence            56677778899999999999999999999999999999999999999999999998665555433322   12   2345


Q ss_pred             CCHHHHHHHHHhccCCCccccccccccCCCCC-CCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHh
Q psy10663        471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDP-LAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFI  549 (572)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~-~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I  549 (572)
                      .+++++..|++....+.+|++||||||.  || .+|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|
T Consensus       456 ~~~~~~~~~~~~~~~t~~H~~GT~rMG~--Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I  533 (542)
T COG2303         456 TTDEDISAAIRFLARTAYHPMGTCRMGS--DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHI  533 (542)
T ss_pred             ccHHHHHHHHHhccCccccccccccCCC--CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHH
Confidence            7788899999999999999999999995  45 45666999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy10663        550 QSP  552 (572)
Q Consensus       550 ~~~  552 (572)
                      +++
T Consensus       534 ~~~  536 (542)
T COG2303         534 LGD  536 (542)
T ss_pred             hhc
Confidence            984

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=1.1e-74  Score=622.87  Aligned_cols=481  Identities=20%  Similarity=0.256  Sum_probs=343.1

Q ss_pred             CccccccCCCCCeEEEEcccCCCC--CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP--ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN   78 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n   78 (572)
                      ++|.||||  +.+|||||+|+...  +....+.   . +.....+|.|.+.+|..    ..++.+.+.|||+|||||.||
T Consensus        69 ~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~---~-~~~~~~d~~~~~~~q~~----~~~~~~~~~rGr~LGGsS~iN  138 (587)
T PLN02785         69 PLAATLSQ--NFSVLLLERGGVPFGNANVSFLE---N-FHIGLADTSPTSASQAF----ISTDGVINARARVLGGGTCIN  138 (587)
T ss_pred             HHHHHHhc--CCcEEEEecCCCCCCCchhhhHH---h-hCCcccccCCccccccc----cCCCceeccccceecchhhhc
Confidence            47999997  58999999998532  2221221   1 23345789998888863    456789999999999999999


Q ss_pred             cceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHH
Q psy10663         79 DMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKA  158 (572)
Q Consensus        79 ~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a  158 (572)
                      +|+|.|+++.||+.      .+|+|+++.|||+++|+.+..                       .+. ..+ +...|.++
T Consensus       139 ~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-----------------------~~~-~~~-~~~~~~~a  187 (587)
T PLN02785        139 AGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-----------------------WPK-VAP-WQAALRDS  187 (587)
T ss_pred             CeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-----------------------CCC-cCh-HHHHHHHH
Confidence            99999999999963      679999999999999976411                       012 356 88999999


Q ss_pred             HHHcCCCCCCCCCCCCccee--ecccccc--CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCC--CEEEEEEE
Q psy10663        159 FEDIGFKSPDTFTVSDHVGI--APPMYYL--KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--TKVTGVEF  232 (572)
Q Consensus       159 ~~~~G~~~~~~~~~~~~~g~--~~~~~~~--~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~--~~a~gV~~  232 (572)
                      ++++|++.  + |+....+.  ..+..++  ..|.|++++. +++ ..+++|++|+++|+|+||++++++  ++|+||++
T Consensus       188 ~~e~G~~~--~-n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~~-~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~  262 (587)
T PLN02785        188 LLEVGVSP--F-NGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LLA-AGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIF  262 (587)
T ss_pred             HHHcCCCc--c-CCCCCCCccceeeeEEEeCCCCEEcCHHH-HHh-hcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEE
Confidence            99999973  2 32221111  0111223  5689998874 554 567899999999999999998532  48999999


Q ss_pred             EcCCCceeEe----eccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCC
Q psy10663        233 RNPQGKTIKV----NANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV  308 (572)
Q Consensus       233 ~~~~g~~~~v----~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~  308 (572)
                      .+.+|+++++    +++|+||||||+|+||+|||+|||||+++|+++||+++.|+|+||+||+||+... +.+..+.+..
T Consensus       263 ~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~~~~~~  341 (587)
T PLN02785        263 KDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS-IFVPSKAPVE  341 (587)
T ss_pred             EECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-eEEEeCCCch
Confidence            9777876654    2557999999999999999999999999999999999999999999999999984 8887765431


Q ss_pred             CccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCCC---CCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhh-
Q psy10663        309 SSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKG---NPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVK-  384 (572)
Q Consensus       309 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  384 (572)
                      .     .....+.....|++....    .+|.......   ...+..........+.    ..    ... +....+.. 
T Consensus       342 ~-----~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~-~~~~~~~~~  403 (587)
T PLN02785        342 Q-----SLIQTVGITKMGVYIEAS----SGFGQSPDSIHCHHGIMSAEIGQLSTIPP----KQ----RTP-EAIQAYIHR  403 (587)
T ss_pred             h-----hhHhhhhhhccccceecc----cccccCchhhhhhccccccccccccccCc----cc----ccc-hhhhhhccC
Confidence            1     011112222234432100    0111100000   0000000000000000    00    000 00000000 


Q ss_pred             --cCC--CCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccc
Q psy10663        385 --VNA--DKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL  460 (572)
Q Consensus       385 --~~~--~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  460 (572)
                        ...  ......+...++.|.|+|+|+|.++||++.|.|++||+.++.|++.++++++.+++++++.+++.+......+
T Consensus       404 ~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~  483 (587)
T PLN02785        404 KKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQT  483 (587)
T ss_pred             cccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccc
Confidence              000  0000123445689999999999999999999999999999999999999999999999998887764322110


Q ss_pred             --cc---------cccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCC
Q psy10663        461 --EI---------KECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE  529 (572)
Q Consensus       461 --~~---------p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~  529 (572)
                        .+         +..+. ...++++|++|+|+...+.+|++|||+||      +|||+++||||++||||||+||||++
T Consensus       484 ~~~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~  556 (587)
T PLN02785        484 MEKVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDES  556 (587)
T ss_pred             cccccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCC
Confidence              00         00011 13577889999999999999999999999      79999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHhhCCC
Q psy10663        530 MVTDSSAVALMLAERCATFIQSPV  553 (572)
Q Consensus       530 ~~~NP~lTi~AlA~r~ad~I~~~~  553 (572)
                      |++||++|+||||||+|++|+++.
T Consensus       557 p~~np~atv~miaer~A~~Il~~~  580 (587)
T PLN02785        557 PGTNPQATVMMMGRYMGVKILRER  580 (587)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999875

>TIGR02462 pyranose_ox pyranose oxidase

Probab=100.00  E-value=4.1e-55  Score=461.42  Aligned_cols=406  Identities=15%  Similarity=0.136  Sum_probs=269.3

Q ss_pred             eecCcccchhhhhccceeccCChhhHHHHHhcCCCCC--ChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEc
Q psy10663         65 LNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITT  142 (572)
Q Consensus        65 ~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W--~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~  142 (572)
                      ..|.|+|||+|+||++.|.|++|.+-   ...+ .||  +|+||+|||+++|++++.+...       +          .
T Consensus       111 ~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~PyY~~Ae~~~gv~g~~-------~----------~  169 (544)
T TIGR02462       111 EAVTRGVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRLYTKAESLIGTSTDQ-------F----------D  169 (544)
T ss_pred             hheeeccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCc-------C----------C
Confidence            45679999999999999999999642   2223 699  9999999999999998654211       0          0


Q ss_pred             cCCccChHHHHHHHHHHHHcCC-CCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhc----CCCCeEEeccceEEE
Q psy10663        143 IKTEKINLLRSTFSKAFEDIGF-KSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIK----DKNTVQVSKNSEVTK  217 (572)
Q Consensus       143 ~~~~~~~~~~~~~~~a~~~~G~-~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~----~~~nl~i~~~~~V~~  217 (572)
                      ++.+... ..+.+.++++  |. .....+.+     +..+  .|..++|+|+..+.++.+.    +++|++|++++.|++
T Consensus       170 ~~~~~~~-~~~~~~~~~~--g~~~~~~~PlA-----~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~  239 (544)
T TIGR02462       170 ESIRHNL-VLRKLQDEYK--GQRDFQPLPLA-----CHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTR  239 (544)
T ss_pred             Ccccchh-HHHHHHHHhc--cccccccCchh-----hhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEE
Confidence            1110122 3333444332  33 21111111     2221  4677889987666676554    489999999999999


Q ss_pred             EEEeCCC-CEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcc
Q psy10663        218 LCFDETK-TKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM  295 (572)
Q Consensus       218 i~~~~~~-~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~  295 (572)
                      |++++++ ++|++|+|.|. +|+.++|+|+ .||||||+|+||||||+|+++...  .+.|+.|.+..+.||||||||+.
T Consensus       240 i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss~~g~VGRnlmdh~~  316 (544)
T TIGR02462       240 LVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPPLLPSLGRYITEQSM  316 (544)
T ss_pred             EEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCCCCCCCCcchhcCCC
Confidence            9998754 68999999987 6888999996 899999999999999999998532  46788886422349999999999


Q ss_pred             cccEEEEeeCCCCCccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC----CCC----CeeEE-eeccCCCchhhhh
Q psy10663        296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK----GNP----DVAVT-QYYFPAQDTLFLR  366 (572)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----~~~----~~~~~-~~~~~~~~~~~~~  366 (572)
                      .. +.+.++++..+         .+    .++..      ...|+.....    ..+    .+.+. ..+....+     
T Consensus       317 ~~-~~~~~~~~~~~---------~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----  371 (544)
T TIGR02462       317 TF-CQIVLSTELVD---------SV----RSDPR------GLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTP-----  371 (544)
T ss_pred             cc-EEEEecchhhh---------hc----cCCcc------ccccccccchhhhccccCCcccccccccCcccccc-----
Confidence            84 77777654310         00    11100      0011111000    000    00000 00000000     


Q ss_pred             hhhccccCchhHHHHHh------hcCCCCCeEEE-EEEecccCcceEEEecC--CCCCCCCeeeCCCCCCHHHHHHHHHH
Q psy10663        367 GHLKAWNVNDDLVERFV------KVNADKPILII-GLVSLCPKAEGVVEINS--NDPTKNPTIRYPLYTEEEDIKNILTA  437 (572)
Q Consensus       367 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~p~s~g~v~l~~--~d~~~~P~i~~~y~~~~~D~~~~~~~  437 (572)
                       +.....|+..+....+      +.......+.+ ...++.|..+|+|+|++  +|.+|+|+++++|..+++|++.+..+
T Consensus       372 -~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~  450 (544)
T TIGR02462       372 -FTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRM  450 (544)
T ss_pred             -cccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHH
Confidence             0000011111100000      00001112222 35678899999999985  69999999999999999999999999


Q ss_pred             HHHHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCC
Q psy10663        438 VKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSN  517 (572)
Q Consensus       438 ~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~n  517 (572)
                      .+.+.++++..+......      .+              .+.  ....+.|++||||||.++. +||||++|||||++|
T Consensus       451 ~~~~~~i~~~~G~~~~~~------~~--------------~~~--~~~~~~H~~Gt~rMG~dp~-~sVvd~~~rv~g~~N  507 (544)
T TIGR02462       451 MTDMCNVAAKIGGYLPGS------LP--------------QFM--EPGLALHLAGTTRIGFDEQ-TTVANTDSKVHNFKN  507 (544)
T ss_pred             HHHHHHHHHHcCCCcccc------cc--------------ccc--CCCccccCCCCeecCCCCC-CceECCCCcEeCCCC
Confidence            999999976543211100      00              000  1235789999999997543 799999999999999


Q ss_pred             ceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663        518 LRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV  553 (572)
Q Consensus       518 L~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~  553 (572)
                      |||+|+|+||+.+++|||+||||||+|+|++|++++
T Consensus       508 L~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~  543 (544)
T TIGR02462       508 LYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF  543 (544)
T ss_pred             eEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999998765

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=5.3e-53  Score=425.01  Aligned_cols=278  Identities=29%  Similarity=0.501  Sum_probs=221.2

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhccc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDM   80 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~   80 (572)
                      |+|.||||+++++|||||+|++.......+...........++|.+.+.++..    ..++.+.+++|++|||||+||+|
T Consensus        14 v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~G~~lGGsS~in~~   89 (296)
T PF00732_consen   14 VVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPRGKGLGGSSAINGG   89 (296)
T ss_dssp             HHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEEB-STTGGGGTS--
T ss_pred             HHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeecceecCCccccccc
Confidence            47999999855899999999987554322221111134456888888877763    57788889999999999999999


Q ss_pred             eeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEE-EccCCccChHHHHHHHHH
Q psy10663         81 IHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTI-TTIKTEKINLLRSTFSKA  158 (572)
Q Consensus        81 ~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~-~~~~~~~~~~~~~~~~~a  158 (572)
                      +++|+++.||+.|... |.++|+|++|+|||+++|++..+.      ..  .|+.++|+++ ..+.+ ..+ ..+.|.++
T Consensus        90 ~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~------~~--~~g~~~~~~v~~~~~~-~~~-~~~~~~~a  159 (296)
T PF00732_consen   90 VYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS------SD--LHGVDGPLPVSSSPPY-PSP-MNQALMDA  159 (296)
T ss_dssp             BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB------GG--GSCBSSSEEEHHHCSC-HCT-HHHHHHHH
T ss_pred             ccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc------cc--ccccccccccccccCC-CCH-HHHHHHHH
Confidence            9999999999999985 788899999999999999998665      23  7889999998 44444 667 78999999


Q ss_pred             HHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC
Q psy10663        159 FEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG  237 (572)
Q Consensus       159 ~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g  237 (572)
                      ++++|++.. ++ +.+...|+..+...|++|+|+|+..+||+++.+++|++|+++|+|+||+++.++++|+||++.+.++
T Consensus       160 ~~~~G~~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~  238 (296)
T PF00732_consen  160 AEELGIPVPQDF-NGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDG  238 (296)
T ss_dssp             HHHTTHHBCSCT-TSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTT
T ss_pred             HHHcCCcccccc-ccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCC
Confidence            999999844 55 5555556555545599999999999999999989999999999999999986678999999998777


Q ss_pred             c--eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcc
Q psy10663        238 K--TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM  295 (572)
Q Consensus       238 ~--~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~  295 (572)
                      .  .+.+.+ |+||||||||+||+|||+||||++++|+++||+++.++| ||+||||||.
T Consensus       239 ~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~  296 (296)
T PF00732_consen  239 GVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV  296 (296)
T ss_dssp             SEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred             cceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence            6  344555 699999999999999999999999999999999999999 9999999973

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=6.1e-35  Score=261.07  Aligned_cols=143  Identities=31%  Similarity=0.543  Sum_probs=117.2

Q ss_pred             cCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccc-ccccccccCCCCCHHHHHHH
Q psy10663        401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQ-LEIKECAKCKYQSEEYYRCA  479 (572)
Q Consensus       401 p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~  479 (572)
                      |.|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++.+. +++++..... ...+.+......++++|++|
T Consensus         1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (144)
T PF05199_consen    1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY   79 (144)
T ss_dssp             -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence            789999999999999999999999999999999999999999999988 6666543322 11122333456778899999


Q ss_pred             HHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHH
Q psy10663        480 IKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC  545 (572)
Q Consensus       480 ~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~  545 (572)
                      ++....+.+|++||||||.+++. +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus        80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra  144 (144)
T PF05199_consen   80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA  144 (144)
T ss_dssp             HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred             eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence            99999999999999999987765 999999999999999999999999999999999999999996

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.16  E-value=0.00096  Score=73.34  Aligned_cols=64  Identities=25%  Similarity=0.349  Sum_probs=52.3

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRILQ  262 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LLl  262 (572)
                      .|..+.+..|++|++++.|++|+.++ +++|+||.+. .+|+.++|+|+|.||||+|+++. +.+|.
T Consensus       218 ~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~-~~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        218 RLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVE-REGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEE-eCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            34455667899999999999999976 3789999987 57888899997679999999985 55544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.10  E-value=0.0014  Score=71.15  Aligned_cols=64  Identities=23%  Similarity=0.342  Sum_probs=51.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHHH
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRILQ  262 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LLl  262 (572)
                      .++..+.++++++|++++.|++|+.+  +++|+||++. .+|+.++|+|+|.||||+|.++. +.++.
T Consensus       178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~~~n~~m~~  242 (513)
T PRK12837        178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVE-RGGERRRVRARRGVLLAAGGFEQNDDMRA  242 (513)
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEE-ECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence            45555555679999999999999987  5799999986 57888899997789999999975 44443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=96.93  E-value=0.0082  Score=65.62  Aligned_cols=60  Identities=28%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +...+++|+.+++|+.|..+  +++++||++.|. +|+..+|+|+ .||+|||+. +.+|+...|
T Consensus       159 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g  219 (546)
T PRK11101        159 AKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYAD  219 (546)
T ss_pred             HHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcC
Confidence            35679999999999999887  578999998753 5666789996 899999974 667765444

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0029  Score=69.32  Aligned_cols=61  Identities=25%  Similarity=0.324  Sum_probs=50.6

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ  263 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~  263 (572)
                      ...++.+++|++++.|++|+.+  +++|+||.+. .+|+.++++|++.||||+|++++-+-|+.
T Consensus       216 ~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~-~~g~~~~i~A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        216 IGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAA-ESGEPQLIRARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             HHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEE-eCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence            3346679999999999999987  4799999987 47788899997679999999998665554

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.70  E-value=0.0044  Score=67.88  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=49.0

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      |...+.+.+++|++++.|++|+.+  +++|+||++. .+|+.++++|+|.||||+|++..-.
T Consensus       214 l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~~aVIlAtGG~~~N~  272 (557)
T PRK12844        214 MLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVV-RDGREVLIRARRGVLLASGGFGHNA  272 (557)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEE-ECCeEEEEEecceEEEecCCccCCH
Confidence            333356679999999999999987  4799999987 5788889999768999999998743

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.35  E-value=0.02  Score=59.30  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      ++..+.+++|++|..+++|+.|....++...+.|.-. .+|+..+|+|+ -|+|+||+ ++=.||+.|||
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~-~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi  253 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDL-KTGEKREVRAK-FVFVGAGG-GALPLLQKSGI  253 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEec-CCCCeEEEECC-EEEECCch-HhHHHHHHcCC
Confidence            4444456689999999999999998765454444333 47888999996 99999998 57789999997

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07121 hypothetical protein; Validated

Probab=96.31  E-value=0.0097  Score=64.32  Aligned_cols=63  Identities=32%  Similarity=0.418  Sum_probs=49.2

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      |....++.+++|++++.|++|+.++ +++++||++. .+++.++++|+|.||||+|.+..-+-|+
T Consensus       183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~-~~~~~~~i~a~k~VVlAtGg~~~N~em~  245 (492)
T PRK07121        183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEAR-RYGETVAIRARKGVVLAAGGFAMNREMV  245 (492)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEE-eCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence            3333456799999999999999875 3689999987 4677788999559999999987543333

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.28  E-value=0.011  Score=63.41  Aligned_cols=64  Identities=25%  Similarity=0.353  Sum_probs=53.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD  268 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~  268 (572)
                      ..+.+++|+.++.|++|+.+  +++++||.+.+.+|+...++|+ .||||+|++...+.|+.+-.++
T Consensus       141 ~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~~  204 (466)
T PRK08274        141 AERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWGQ  204 (466)
T ss_pred             HHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcCC
Confidence            45679999999999999986  4789999986567777889995 8999999999988888765543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.26  E-value=0.01  Score=64.90  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      ..+.+++|++++.|++|+.+  +++++||.+. .+|+++.|.|+|-||||+|.++...
T Consensus       227 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~a~kaVILAtGGf~~n~  281 (564)
T PRK12845        227 VLRAGIPIWTETSLVRLTDD--GGRVTGAVVD-HRGREVTVTARRGVVLAAGGFDHDM  281 (564)
T ss_pred             HHHCCCEEEecCEeeEEEec--CCEEEEEEEE-ECCcEEEEEcCCEEEEecCCccccH
Confidence            45679999999999999865  4799999887 4677788999778999999998654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.11  E-value=0.014  Score=61.73  Aligned_cols=57  Identities=28%  Similarity=0.492  Sum_probs=44.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      .+..+++|+.++.|++|+.+  +++|+||++.+ .+|+.++|+|+ .||||+|.++. .++.
T Consensus       151 ~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~  208 (417)
T PF00890_consen  151 AEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR  208 (417)
T ss_dssp             HHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred             HhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence            34556999999999999998  46999999984 47888999997 99999999999 5443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=95.88  E-value=0.023  Score=62.72  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      .+.+.+++|+.++.|++|+.+  +++++||.+.+ ++..++++|+|.||||+|++..-.-++
T Consensus       226 ~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~  284 (581)
T PRK06134        226 SAEDLGVRIWESAPARELLRE--DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPARR  284 (581)
T ss_pred             HHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence            345679999999999999987  57999998873 455678999558999999998655443

>KOG2404|consensus

Probab=95.83  E-value=0.0093  Score=58.09  Aligned_cols=50  Identities=30%  Similarity=0.459  Sum_probs=44.4

Q ss_pred             CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .-++|+++++|++|+.+  .+++.||+|.|.+|+...+.++ .||||.|.+.-
T Consensus       158 e~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y  207 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY  207 (477)
T ss_pred             HHHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence            35799999999999955  6899999999999999888886 89999999984

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.63  E-value=0.031  Score=61.59  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      .++.+++|++++.|++|+.+  +++++||.+. .+|+.+++.|++.||||+|++..-.
T Consensus       231 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg~~~n~  285 (578)
T PRK12843        231 LRARGVRILTQTDVESLETD--HGRVIGATVV-QGGVRRRIRARGGVVLATGGFNRHP  285 (578)
T ss_pred             HHhCCCEEEeCCEEEEEEee--CCEEEEEEEe-cCCeEEEEEccceEEECCCCcccCH
Confidence            45679999999999999886  4799999987 4677788998668999999998743

>PRK12839 hypothetical protein; Provisional

Probab=95.56  E-value=0.034  Score=61.02  Aligned_cols=56  Identities=32%  Similarity=0.464  Sum_probs=44.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      +.+.+++|+.++.|++|+.++ +++++||.+.+.+|+ .++.+.|.||||+|++..-.
T Consensus       224 a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~-~~i~aak~VVLAtGGf~~n~  279 (572)
T PRK12839        224 ADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGA-VTVEATRGVVLATGGFPNDV  279 (572)
T ss_pred             HHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCc-EEEEeCCEEEEcCCCcccCH
Confidence            455789999999999998865 479999998855554 55666569999999998733

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.47  E-value=0.037  Score=58.70  Aligned_cols=57  Identities=16%  Similarity=0.328  Sum_probs=45.0

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ++..+.++.|++|+.++.|++|+.+  +++++||.+. .++..++++|+ .||||+|+++.
T Consensus       134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~-~~g~~~~i~Ak-~VILAtGG~~~  190 (433)
T PRK06175        134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICL-KDNKQINIYSK-VTILATGGIGG  190 (433)
T ss_pred             HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEE-ECCcEEEEEcC-eEEEccCcccc
Confidence            4444445679999999999999876  4789998876 35666789995 89999999764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.38  E-value=0.041  Score=60.43  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.|+|+ .||||+|.+..
T Consensus       136 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  190 (570)
T PRK05675        136 NLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR  190 (570)
T ss_pred             HhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence            456799999999999999864 47999999865 47888899995 99999999885

>PLN02815 L-aspartate oxidase

Probab=95.36  E-value=0.032  Score=61.35  Aligned_cols=60  Identities=13%  Similarity=0.248  Sum_probs=47.1

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCC--EEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~--~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ++..+.+.+|++|+.++.|++|+.+++++  +++||.+.+. +|+.+.+.|+ .||||+|.++-
T Consensus       161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  223 (594)
T PLN02815        161 LLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH  223 (594)
T ss_pred             HHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence            33334455799999999999999875444  4999998754 6777889995 99999999873

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.32  E-value=0.045  Score=60.13  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ....+.+++|+.++.|++|+.+  +++++||.+.+ .+|+...|+|+ .||||+|.++.
T Consensus       127 ~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~  182 (565)
T TIGR01816       127 QQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR  182 (565)
T ss_pred             HHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence            3345678999999999999986  47999999865 36888899995 99999999875

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.30  E-value=0.041  Score=58.53  Aligned_cols=58  Identities=28%  Similarity=0.292  Sum_probs=46.0

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |...+.+.+++|+.++.|++|+.++ +++++||++.+.+++...+.++ .||||+|++..
T Consensus       136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~  193 (439)
T TIGR01813       136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCC
Confidence            3333456789999999999999875 4689999998656666677885 99999998876

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.28  E-value=0.043  Score=60.07  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=45.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.+++|++++.|++|+.++ +++++||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus       144 ~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~  198 (543)
T PRK06263        144 LIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ  198 (543)
T ss_pred             HhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence            445899999999999999874 45799998876 57888899995 99999999874

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.16  E-value=0.043  Score=61.11  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=45.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ....|++|+.++.|++|+.+  +++++||.+.+. +|..+.+.|+ .||||+|.++.
T Consensus       180 ~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  233 (640)
T PRK07573        180 IAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN  233 (640)
T ss_pred             HHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence            35679999999999999987  479999999864 6777789995 89999999886

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.02  E-value=0.07  Score=59.00  Aligned_cols=52  Identities=19%  Similarity=0.261  Sum_probs=44.1

Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..|++|+.++.|++|+.++ +++++||.+.+. +|+...+.|+ .||||+|.++.
T Consensus       145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSAD-AVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence            4689999999999999874 469999998864 6777889995 89999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.00  E-value=0.057  Score=59.71  Aligned_cols=54  Identities=22%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.+.|+ .||||+|.++.
T Consensus       159 ~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  213 (598)
T PRK09078        159 SLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR  213 (598)
T ss_pred             HhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence            345789999999999999874 37999998864 47888899995 89999999885

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.98  E-value=0.074  Score=58.62  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      ..+.+++|+.++.|++|+.+  +++++||.+.+.+ ....++++|.||||+|.+..-.-++
T Consensus       224 ~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~-~~~~i~a~k~VVlAtGg~~~n~~~~  281 (574)
T PRK12842        224 ALDLGIPILTGTPARELLTE--GGRVVGARVIDAG-GERRITARRGVVLACGGFSHDLARI  281 (574)
T ss_pred             HHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCC-ceEEEEeCCEEEEcCCCccchHHHH
Confidence            45679999999999999987  5799999988433 4467888668999999987554444

>PRK07395 L-aspartate oxidase; Provisional

Probab=94.98  E-value=0.039  Score=60.31  Aligned_cols=54  Identities=15%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .+++|++|+.++.|++|+.++++++++||.+. .+|..+.++|+ .||||+|+++.
T Consensus       145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~Ak-aVILATGG~~~  198 (553)
T PRK07395        145 LQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAG-AVILATGGGGQ  198 (553)
T ss_pred             hhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcC-EEEEcCCCCcc
Confidence            34579999999999999987434799999887 47777789995 89999999753

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.88  E-value=0.072  Score=58.75  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=45.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ....+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.++|+ .||||+|.+..
T Consensus       153 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  207 (588)
T PRK08958        153 NLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR  207 (588)
T ss_pred             hhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence            446799999999999999864 47999999864 47888899995 99999999875

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=94.77  E-value=0.041  Score=57.22  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=47.4

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~  256 (572)
                      +.+..+.+++|++|+.++.+.+|+.++ +..+.||.+.+.+++..+++|+ .||||+|.++
T Consensus       138 ~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g  196 (518)
T COG0029         138 ALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG  196 (518)
T ss_pred             HHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence            455556678999999999999999984 2356699998654567889996 9999999764

>PRK09077 L-aspartate oxidase; Provisional

Probab=94.71  E-value=0.079  Score=57.86  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeC----CCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDE----TKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~----~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +..+.+.+|++|+.++.|++|+.++    ++++++||.+.+. +|+...|+|+ .||||+|++..
T Consensus       145 ~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~  208 (536)
T PRK09077        145 VERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK  208 (536)
T ss_pred             HHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence            3334456799999999999998763    2379999998754 6777889995 99999999874

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.62  E-value=0.086  Score=57.95  Aligned_cols=52  Identities=19%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~  256 (572)
                      ..+.+++|+.++.|++|+.+  +++++||.+.+. +|+.+.++|+ .||||+|.++
T Consensus       146 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  198 (566)
T PRK06452        146 TSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG  198 (566)
T ss_pred             HHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence            34469999999999999987  479999998865 5667789995 9999999997

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=94.58  E-value=0.072  Score=59.48  Aligned_cols=53  Identities=21%  Similarity=0.184  Sum_probs=45.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.+++|+.++.|++|+.+  +++++||.+.+ .+|+.+.+.|+ .||||+|.++.
T Consensus       168 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~  221 (657)
T PRK08626        168 AIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR  221 (657)
T ss_pred             HHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence            45679999999999999987  57999999986 47888889995 89999998874

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=94.56  E-value=0.063  Score=54.90  Aligned_cols=60  Identities=35%  Similarity=0.462  Sum_probs=43.9

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      .|.....+.|++|+.+++|++|..+  +++++||+..  +|   +++|+ .||+|+|+ .|++|+-.++
T Consensus       152 ~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~--~g---~i~ad-~vV~a~G~-~s~~l~~~~~  211 (358)
T PF01266_consen  152 ALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTS--DG---EIRAD-RVVLAAGA-WSPQLLPLLG  211 (358)
T ss_dssp             HHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEET--TE---EEEEC-EEEE--GG-GHHHHHHTTT
T ss_pred             hhHHHHHHhhhhccccccccchhhc--cccccccccc--cc---ccccc-eeEecccc-cceeeeeccc
Confidence            3333345569999999999999999  6788889875  44   38886 89999997 7888777665

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.51  E-value=0.085  Score=58.52  Aligned_cols=54  Identities=19%  Similarity=0.147  Sum_probs=45.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+.|++|+.++.|++|+.++ ++++.||.+.+ .+|+.+.++|+ .||||+|.++.
T Consensus       176 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  230 (617)
T PTZ00139        176 SLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR  230 (617)
T ss_pred             HHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence            445799999999999999843 47999999865 37888889995 99999999875

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=94.45  E-value=0.12  Score=56.54  Aligned_cols=56  Identities=20%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEc--CC------------CceeEeeccceeEeccCcchh-hHHHH
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN--PQ------------GKTIKVNANREVVLAANSINS-VRILQ  262 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~--~~------------g~~~~v~A~k~VILaAGai~T-p~LLl  262 (572)
                      ..+++|++++.|++|+.+  +++|+||++.+  .+            +...+|+|+ -||||+|.++. +.++.
T Consensus       164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~Ak-aVILATGGf~~n~em~~  234 (549)
T PRK12834        164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQ-AVIVTSGGIGGNHELVR  234 (549)
T ss_pred             hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEecC-EEEEeCCCcccCHHHHH
Confidence            457999999999999986  48999998742  11            235688995 89999999984 44544

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=94.37  E-value=0.096  Score=58.20  Aligned_cols=54  Identities=20%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+.|++|+.++.|++|+.++ ++++.||.+.+. +|+.+.+.|+ .||||+|.++.
T Consensus       197 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  251 (635)
T PLN00128        197 AMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAH-STILATGGYGR  251 (635)
T ss_pred             HHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence            345699999999999999874 379999998764 7888899995 99999999875

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=94.34  E-value=0.097  Score=56.74  Aligned_cols=58  Identities=21%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh-HHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV-RILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp-~LLl  262 (572)
                      ....+++|++++.|++|+.+  +++++||.+...+|+..+++|+ .||||+|.+... .++.
T Consensus       200 ~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~  258 (506)
T PRK06481        200 VQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIA  258 (506)
T ss_pred             HHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHH
Confidence            35578999999999999865  4789999887545667789995 999999988754 4443

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=94.24  E-value=0.09  Score=56.72  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=43.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCC--CEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~--~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ++..|+++++++.|++|+++.++  ++|+||++... .+++..+.+++.|||+.|++..
T Consensus       236 Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        236 LEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            46689999999999999996333  78999999721 3344566777899999998854

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=94.14  E-value=0.099  Score=62.38  Aligned_cols=54  Identities=24%  Similarity=0.454  Sum_probs=45.9

Q ss_pred             CCeEEeccceEEEEEEeCC----C---CEEEEEEEEcC---CCceeEeeccceeEeccCcchhhH
Q psy10663        205 NTVQVSKNSEVTKLCFDET----K---TKVTGVEFRNP---QGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       205 ~nl~i~~~~~V~~i~~~~~----~---~~a~gV~~~~~---~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      .+++|+.++.|++|+.+++    |   ++|+||++.+.   +|+.+.|+|+ .||||+|.++.-.
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~  623 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH  623 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence            6899999999999998742    2   38999999865   7888899995 8999999998743

>PRK08275 putative oxidoreductase; Provisional

Probab=94.10  E-value=0.11  Score=56.93  Aligned_cols=57  Identities=19%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~  256 (572)
                      |.....+.+++|+.++.|++|+.++ ++++.||.+.+. +|+...++|+ .||||+|++.
T Consensus       143 L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~  200 (554)
T PRK08275        143 LYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG  200 (554)
T ss_pred             HHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence            3333456799999999999999864 368999987653 6777789995 8999999975

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=93.97  E-value=0.16  Score=55.98  Aligned_cols=54  Identities=22%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+.+|++++.++.|++|+.+  +++++||.+.+. +|+.+.++|+ .||||+|.+.-
T Consensus       142 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  196 (580)
T TIGR01176       142 SLTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR  196 (580)
T ss_pred             HHhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence            334579999999999999987  479999988753 7777889995 99999999774

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.96  E-value=0.17  Score=55.82  Aligned_cols=54  Identities=22%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+.+|++++.++.|++|+.+  +++++||.+.+ .+|+...++|+ .||||.|++..
T Consensus       143 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~  197 (582)
T PRK09231        143 SLKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR  197 (582)
T ss_pred             hhcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence            334468999999999999987  47999998865 36777889995 99999999774

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=93.76  E-value=0.15  Score=56.25  Aligned_cols=53  Identities=25%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.|++|+.++.|++|+.+  +++++||.+.+. +|+...++|+ .||||+|++..
T Consensus       139 ~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~  192 (566)
T TIGR01812       139 CLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR  192 (566)
T ss_pred             HHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence            33459999999999999987  479999988753 6777789995 99999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.73  E-value=0.16  Score=56.61  Aligned_cols=49  Identities=24%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             CeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        206 TVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       206 nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |++|+.++.|++|+.+  ++++.||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus       165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~  214 (626)
T PRK07803        165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK  214 (626)
T ss_pred             ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence            4999999999999986  47899998764 36777889995 89999999774

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=93.64  E-value=0.15  Score=53.21  Aligned_cols=58  Identities=21%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS  264 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S  264 (572)
                      .++.+.+++.++.|+++.++  ++++++|...  ++...+++|+ .||||+|++-|..|+...
T Consensus       273 ~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~--~g~~~~l~AD-~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       273 FEQLGGVMLPGDRVLRAEFE--GNRVTRIHTR--NHRDIPLRAD-HFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHCCCEEEECcEEEEEEee--CCeEEEEEec--CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence            45678899999999999988  5788887654  4445678997 799999999899886554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.58  E-value=0.2  Score=54.54  Aligned_cols=60  Identities=25%  Similarity=0.349  Sum_probs=48.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +...+++|+.++.|++|+.+  ++++++|++.|. +|+..+|+|+ .||+|||+. +..|+...|
T Consensus       138 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g  198 (516)
T TIGR03377       138 AQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAG  198 (516)
T ss_pred             HHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcC
Confidence            45679999999999999987  578999998753 5777889996 899999964 677776555

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=93.53  E-value=0.4  Score=50.05  Aligned_cols=65  Identities=22%  Similarity=0.252  Sum_probs=47.8

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD  268 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~  268 (572)
                      .|+..+ ...|++|..+++|+.|...++|  ++-+..  .+|++. ++|+ .||.||| ..+-+|+.++|+.+
T Consensus       158 ~l~e~a-~~~g~~i~ln~eV~~i~~~~dg--~~~~~~--~~g~~~-~~ak-~Vin~AG-l~Ad~la~~~g~~~  222 (429)
T COG0579         158 ALAEEA-QANGVELRLNTEVTGIEKQSDG--VFVLNT--SNGEET-LEAK-FVINAAG-LYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHH-HHcCCEEEecCeeeEEEEeCCc--eEEEEe--cCCcEE-EEee-EEEECCc-hhHHHHHHHhCCCc
Confidence            455554 4459999999999999998643  222222  367666 9995 8999999 57889999999654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.47  E-value=0.21  Score=55.07  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=44.0

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.|++|++++.|++|+.+  ++++.||...+ .+|+...++|+ .||||+|++..
T Consensus       145 ~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~  198 (575)
T PRK05945        145 LRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR  198 (575)
T ss_pred             HhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence            45679999999999999887  47899998754 36776789995 99999999874

>PRK08071 L-aspartate oxidase; Provisional

Probab=93.43  E-value=0.15  Score=55.23  Aligned_cols=50  Identities=26%  Similarity=0.346  Sum_probs=43.6

Q ss_pred             CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .+++|+.++.|++|+.+  ++++.||.+.+.+|+.+.++|+ .||||+|++..
T Consensus       142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence            68999999999999876  4789999988667777889995 99999999875

>PRK07512 L-aspartate oxidase; Provisional

Probab=93.39  E-value=0.14  Score=55.60  Aligned_cols=55  Identities=27%  Similarity=0.402  Sum_probs=43.3

Q ss_pred             hhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        199 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       199 ~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.++++++|+.++.|++|+.+  +++++||.+.+ ++..++++|+ .||||+|++..
T Consensus       144 ~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~~  198 (513)
T PRK07512        144 AAVRATPSITVLEGAEARRLLVD--DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIGG  198 (513)
T ss_pred             HHHHhCCCCEEEECcChhheeec--CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCcC
Confidence            33334569999999999999876  47999998874 4445678995 89999999863

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.38  E-value=0.22  Score=54.97  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+..+++|+.++.|++|+.+  +++++||.+.+. +|+...++|+ .||||+|++..
T Consensus       147 ~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~  201 (577)
T PRK06069        147 ALRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR  201 (577)
T ss_pred             HHhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence            334479999999999999987  479999988753 6766789995 99999999863

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.33  E-value=0.19  Score=55.51  Aligned_cols=59  Identities=24%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCC--CCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~--~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |...+...|++|+.++.|++|+.+++  +++++||.+.+ .+|+.+.++|+ .||||+|.+..
T Consensus       146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  207 (583)
T PRK08205        146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR  207 (583)
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence            33334567999999999999998742  27899998864 36777789995 99999999874

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.12  E-value=0.22  Score=55.01  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=44.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ....+++|+.++.|++|+.++ +++++||.+.+. +|+...++|+ .||||+|.+..
T Consensus       158 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  212 (591)
T PRK07057        158 NVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR  212 (591)
T ss_pred             HHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence            345799999999999999864 478999998754 6777788895 99999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=93.04  E-value=0.28  Score=54.42  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcch
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~  256 (572)
                      .+..|++|+.++.|++|+.+  +++++||.+.+ .+|+...++|+ .||||+|++.
T Consensus       143 ~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  195 (608)
T PRK06854        143 KKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA  195 (608)
T ss_pred             HhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence            34456999999999999887  47899998754 35666789995 9999999986

>TIGR00551 nadB L-aspartate oxidase

Probab=92.95  E-value=0.24  Score=53.44  Aligned_cols=51  Identities=20%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+|++|+.++.|++|+.+  +++++||.+.+. +...+++|+ .||||+|++..
T Consensus       140 ~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~-~~~~~i~A~-~VVlAtGG~~~  190 (488)
T TIGR00551       140 NHPNIRIIEGENALDLLIE--TGRVVGVWVWNR-ETVETCHAD-AVVLATGGAGK  190 (488)
T ss_pred             hcCCcEEEECeEeeeeecc--CCEEEEEEEEEC-CcEEEEEcC-EEEECCCcccC
Confidence            3479999999999999876  478999988743 555678995 99999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=92.71  E-value=0.24  Score=55.06  Aligned_cols=62  Identities=26%  Similarity=0.309  Sum_probs=48.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.+++|+.++.|++|..+++++++++|.+.|. +|+.++|+|+ .||+|||+. +.+|+...+
T Consensus       242 A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g  304 (627)
T PLN02464        242 AALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD  304 (627)
T ss_pred             HHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence            4567999999999999988742368999998764 5667789996 899999975 667766554

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.55  E-value=0.27  Score=54.29  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             CCCeEEeccceEEEEEEeCCC-CEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663        204 KNTVQVSKNSEVTKLCFDETK-TKVTGVEFRNP-QGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~-~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~  256 (572)
                      ..+++|+.++.|++|+.++++ ++++||.+.+. +|+.+.++|+ .||||+|.+.
T Consensus       138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  191 (614)
T TIGR02061       138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV  191 (614)
T ss_pred             hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence            345799999999999987432 69999988653 6777889995 9999999985

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=92.55  E-value=0.32  Score=51.63  Aligned_cols=58  Identities=14%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ  263 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~  263 (572)
                      .++.+++|++++.|++|+.++++++++||... .++  .+++|+ .||||+|.++..+=++.
T Consensus       133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak-~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQ-ALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcC-EEEEcCCCcccCHHHHH
Confidence            45679999999999999876424789998764 222  578885 89999999887654443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.52  E-value=0.27  Score=54.34  Aligned_cols=51  Identities=14%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             CCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663        205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .+++|+.++.|++|+.++ +++++||.+.+. +|+.+.+.|+ .||||+|.+..
T Consensus       150 ~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  201 (589)
T PRK08641        150 GLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI  201 (589)
T ss_pred             CCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence            358999999999999864 479999999865 4666788895 99999999885

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.46  E-value=0.11  Score=48.63  Aligned_cols=61  Identities=23%  Similarity=0.281  Sum_probs=38.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS  264 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S  264 (572)
                      .||...+++.+++|+.+++|++|..+++ +  --|++.  ++  .+++|+ .||||.|....|+++..-
T Consensus        86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~--w~v~~~--~~--~~~~a~-~VVlAtG~~~~p~~p~~~  146 (203)
T PF13738_consen   86 DYLQEYAERFGLEIRFNTRVESVRRDGD-G--WTVTTR--DG--RTIRAD-RVVLATGHYSHPRIPDIP  146 (203)
T ss_dssp             HHHHHHHHHTTGGEETS--EEEEEEETT-T--EEEEET--TS---EEEEE-EEEE---SSCSB---S-T
T ss_pred             HHHHHHHhhcCcccccCCEEEEEEEecc-E--EEEEEE--ec--ceeeee-eEEEeeeccCCCCccccc
Confidence            4777766777889999999999999853 3  345554  44  677796 899999999999987543

...

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.16  E-value=0.88  Score=49.04  Aligned_cols=66  Identities=18%  Similarity=0.333  Sum_probs=44.8

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      |...+.+..+++|+.+++|+.|..+++ +++ .|.+.+ .+|+..+++|+ .||+|||+ .+.+|+..+|+
T Consensus       189 L~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi  255 (494)
T PRK05257        189 LVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGI  255 (494)
T ss_pred             HHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCC
Confidence            334433344599999999999987643 322 344432 24554578996 89999998 57778888775

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.01  E-value=0.19  Score=53.66  Aligned_cols=73  Identities=27%  Similarity=0.368  Sum_probs=55.5

Q ss_pred             CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663        186 KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS  264 (572)
Q Consensus       186 ~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~S  264 (572)
                      .+.+|-...+  ... +...+.+|++.+.|++++.+  ++ +.||++.|. +|+++.++|+ .||-|||. -+-+|+...
T Consensus       161 vddaRLv~~~--a~~-A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~  232 (532)
T COG0578         161 VDDARLVAAN--ARD-AAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMA  232 (532)
T ss_pred             echHHHHHHH--HHH-HHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhh
Confidence            3455655442  222 35689999999999999998  45 999999986 5899999996 89999997 456666666


Q ss_pred             CC
Q psy10663        265 GV  266 (572)
Q Consensus       265 gI  266 (572)
                      +.
T Consensus       233 ~~  234 (532)
T COG0578         233 GL  234 (532)
T ss_pred             cc
Confidence            53

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=91.73  E-value=0.75  Score=49.41  Aligned_cols=67  Identities=22%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      .|+..+.+..+++|+.++.|+.|..+++++.  .|.+.+ ..|+..+++|+ .||+|||+ .+-+|+..+|+
T Consensus       189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w--~v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi  256 (497)
T PRK13339        189 KLAKHLESHPNAQVKYNHEVVDLERLSDGGW--EVTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGI  256 (497)
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEEECCCCCE--EEEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCC
Confidence            4554444556899999999999987633332  233321 24444468996 89999998 67888888875

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=90.95  E-value=0.87  Score=49.03  Aligned_cols=53  Identities=23%  Similarity=0.334  Sum_probs=40.6

Q ss_pred             CeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663        206 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG  267 (572)
Q Consensus       206 nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG  267 (572)
                      +++|+.++.|+.|..++  +....|...  +|   +++|+ .||+|||+ .|.+|+..+|++
T Consensus       231 ~v~i~~~t~V~~I~~~~--~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~  283 (497)
T PTZ00383        231 KISINLNTEVLNIERSN--DSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYG  283 (497)
T ss_pred             CEEEEeCCEEEEEEecC--CCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence            38999999999998763  444455432  44   58996 89999997 588899988864

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=90.82  E-value=1.3  Score=47.76  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=44.6

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      ++.. ..+.+++|+.+++|++|..+++ +.+ .|.+.+ ..|+..+++|+ .||+|||+ .+.+|+...|+
T Consensus       184 L~~~-a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi  249 (483)
T TIGR01320       184 LLGY-LVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGI  249 (483)
T ss_pred             HHHH-HHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCC
Confidence            4444 3456999999999999987542 222 233332 24555678996 89999997 57778877775

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=90.54  E-value=0.73  Score=53.70  Aligned_cols=51  Identities=16%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..++++.+++.+++|+.+  +++++||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus       155 ~~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  206 (897)
T PRK13800        155 RERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCGR  206 (897)
T ss_pred             cCCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence            358999999999999886  57999999875 37888899995 99999999873

>PRK07804 L-aspartate oxidase; Provisional

Probab=90.53  E-value=0.61  Score=51.02  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC----CCceeEeeccceeEeccCcchh
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~----~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ...++.+++|+.++.|++|+.++ +++++||.+.+.    ++....++|+ .||||+|++..
T Consensus       152 ~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~  211 (541)
T PRK07804        152 AAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ  211 (541)
T ss_pred             HHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence            33445679999999999999874 369999988631    2334678995 99999999763

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=90.30  E-value=0.67  Score=48.72  Aligned_cols=60  Identities=25%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      .|.....+.+++|+++++|+++..+  +++++.|..  .+|+..+++|+ .||||+|.+.+.-|.
T Consensus       264 aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~--~~g~~~~i~AD-~VVLAtGrf~s~GL~  323 (422)
T PRK05329        264 ALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWT--RNHGDIPLRAR-HFVLATGSFFSGGLV  323 (422)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEe--eCCceEEEECC-EEEEeCCCcccCcee
Confidence            3444455679999999999999887  456766652  46777789996 899999998766653

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=89.17  E-value=0.73  Score=47.56  Aligned_cols=53  Identities=28%  Similarity=0.437  Sum_probs=40.5

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      +.+.+|++|+ ..+|+.|..+  ++++.||...  +|.  .++|+ .||||+|++.+..+.
T Consensus       105 l~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~--~g~--~~~a~-~vVlaTGtfl~G~~~  157 (392)
T PF01134_consen  105 LESHPNLTII-QGEVTDLIVE--NGKVKGVVTK--DGE--EIEAD-AVVLATGTFLNGCIH  157 (392)
T ss_dssp             HHTSTTEEEE-ES-EEEEEEC--TTEEEEEEET--TSE--EEEEC-EEEE-TTTGBTSEEE
T ss_pred             HhcCCCeEEE-EcccceEEec--CCeEEEEEeC--CCC--EEecC-EEEEecccccCceee
Confidence            3567999997 6899999998  5899999875  565  67885 899999996555543

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02661 Putative thiazole synthesis

Probab=88.27  E-value=1.3  Score=45.15  Aligned_cols=57  Identities=16%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE------cCCC----ceeEeeccceeEeccCcch
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR------NPQG----KTIKVNANREVVLAANSIN  256 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~------~~~g----~~~~v~A~k~VILaAGai~  256 (572)
                      ++..+.+++|++|+.++.|+.|+.+  ++++.||.+.      +..+    ....++|+ .||||+|.-+
T Consensus       178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g  244 (357)
T PLN02661        178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG  244 (357)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence            4444556789999999999999987  5789999852      1112    23578995 9999999543

>TIGR02730 carot_isom carotene isomerase

Probab=87.85  E-value=0.86  Score=49.29  Aligned_cols=56  Identities=25%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      ...++.+.+|++++.|++|..+  ++++.+|.+.  +|+  ++.|+ .||+|+|...+-+.|+
T Consensus       237 ~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~--~g~--~~~ad-~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       237 KGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA--DGE--KIYAK-RIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC--CCC--EEEcC-EEEECCChHHHHHHhC
Confidence            3346678999999999999987  4788899875  554  56786 8999999887776554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=87.73  E-value=1.2  Score=43.64  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=39.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC----CC---ceeEeeccceeEeccCcc
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QG---KTIKVNANREVVLAANSI  255 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~----~g---~~~~v~A~k~VILaAGai  255 (572)
                      +...|++|+.++.|+.|..++ ++++.||.+.+.    .|   ...+++|+ .||+|+|.-
T Consensus       114 A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~  172 (257)
T PRK04176        114 AIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHD  172 (257)
T ss_pred             HHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCC
Confidence            345799999999999998864 348999987531    12   35789995 999999953

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=87.45  E-value=1  Score=45.62  Aligned_cols=50  Identities=30%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      +...|++++.++.|+.|..+  ++++++|...  +|   +++|+ .||+|+|+ .|++|
T Consensus       147 ~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~--~g---~~~a~-~vV~a~G~-~~~~l  196 (337)
T TIGR02352       147 LEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP--SG---DVQAD-QVVLAAGA-WAGEL  196 (337)
T ss_pred             HHHcCCEEEccceEEEEEee--CCEEEEEEcC--CC---EEECC-EEEEcCCh-hhhhc
Confidence            45679999999999999876  5678787642  33   67896 89999997 44443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=87.36  E-value=1.2  Score=48.12  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=43.1

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ....+.+|++++.|++|+.+  ++++++|.+.+. +|+..++.|+ .||+++..-.+.+||
T Consensus       242 ~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll  299 (492)
T TIGR02733       242 LKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL  299 (492)
T ss_pred             HHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence            34578999999999999988  467889987642 2333568896 799998887666644

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=86.49  E-value=0.21  Score=52.91  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=0.0

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      |.......|++|+.++.|..++.+  ++++++|.+.+..| ..+|+|+ .||-|.|   .-.|+-++|+
T Consensus        96 l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG---~g~l~~~aG~  157 (428)
T PF12831_consen   96 LDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSG-RKEIRAK-VFIDATG---DGDLAALAGA  157 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc--cccccccccccccc-ccccccc-ccccccc---cccccccccc
Confidence            333345689999999999999998  68999999986666 7899996 9999999   3578888874

>TIGR02734 crtI_fam phytoene desaturase

Probab=85.39  E-value=1.5  Score=47.42  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      .++.+.+|++++.|++|..+  ++++++|++.  +|+  ++.|+ .||+|++...+-..|+
T Consensus       229 ~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~--~g~--~~~ad-~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       229 AEDLGGELRLNAEVIRIETE--GGRATAVHLA--DGE--RLDAD-AVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHCCCEEEECCeEEEEEee--CCEEEEEEEC--CCC--EEECC-EEEECCcHHHHHHHhc
Confidence            45568999999999999987  4688888775  554  46786 7999999888887765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=85.28  E-value=1.9  Score=47.06  Aligned_cols=88  Identities=20%  Similarity=0.243  Sum_probs=61.6

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch-----hhHHHHHcCCCChHHHhh
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN-----SVRILQQSGVGDAALLSK  274 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~-----Tp~LLl~SgIG~~~~l~~  274 (572)
                      +.+..+++|+.+..|++|+.+++ +.+.||...+. +|+.+.++| |.||||.|+.+     |+-.....|-|- .....
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~  224 (562)
T COG1053         148 LLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYR  224 (562)
T ss_pred             HHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHh
Confidence            34447789999999999998863 44889888765 578888889 58999999998     555555544333 24445


Q ss_pred             cCCCceecCcccCccccCCccc
Q psy10663        275 YNIPLVKNLPGVGKRLSLHPMF  296 (572)
Q Consensus       275 ~Gi~~~~~lp~VG~nl~dH~~~  296 (572)
                      .|.+ ..    ..+..|-||..
T Consensus       225 aGa~-l~----dme~~Q~hpt~  241 (562)
T COG1053         225 AGAP-LI----DMEFVQFHPTG  241 (562)
T ss_pred             cCCc-cc----CCCccccccce
Confidence            5555 22    34567777765

>KOG0042|consensus

Probab=84.97  E-value=0.4  Score=50.48  Aligned_cols=68  Identities=26%  Similarity=0.312  Sum_probs=53.0

Q ss_pred             CCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhH
Q psy10663        187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       187 ~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      +.+|.....+.-   +.+.++++.-..+|.+++.+++ +++.|++++|. .|++++|+|+ .||=|+|-+.-.-
T Consensus       222 nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATGpfsDsI  290 (680)
T KOG0042|consen  222 NDARMNLAVALT---AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAK-VVVNATGPFSDSI  290 (680)
T ss_pred             chHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEE-EEEeCCCCccHHH
Confidence            445554432221   4578999999999999999875 58999999986 8999999995 9999999875443

>TIGR02731 phytoene_desat phytoene desaturase

Probab=84.63  E-value=1.7  Score=46.40  Aligned_cols=50  Identities=20%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCc-eeEeeccceeEeccCc
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANS  254 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~-~~~v~A~k~VILaAGa  254 (572)
                      ...+.+|.+++.|++|..++ +++++||++.+..|+ .+++.|+ .||+|+..
T Consensus       224 ~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~  274 (453)
T TIGR02731       224 TSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV  274 (453)
T ss_pred             HhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence            34578999999999998765 467889998743332 3468886 89998865

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG4254|consensus

Probab=84.59  E-value=0.95  Score=46.73  Aligned_cols=61  Identities=18%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ  263 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~  263 (572)
                      ..+.+.+++.+.+|++++.|.+|+.|  +++|.||.+.  +|+  ++++ |.||=-|+-..|=.=|+-
T Consensus       268 ~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~--dG~--ev~s-k~VvSNAt~~~Tf~kLlp  328 (561)
T KOG4254|consen  268 FAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA--DGT--EVRS-KIVVSNATPWDTFEKLLP  328 (561)
T ss_pred             HHHHHHHHhccceeeehhhhhheecc--CCeEEEEEec--CCc--EEEe-eeeecCCchHHHHHHhCC
Confidence            34555678899999999999999999  5899999997  776  5566 477777877777644543

>PRK06185 hypothetical protein; Provisional

Probab=84.42  E-value=3.2  Score=43.53  Aligned_cols=51  Identities=29%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI  255 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai  255 (572)
                      +.+.++++++.++.|+.+..+  ++++++|.+...+| +.+++|+ .||.|.|+-
T Consensus       118 ~~~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~~  168 (407)
T PRK06185        118 ASAYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDG-PGEIRAD-LVVGADGRH  168 (407)
T ss_pred             HhhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCC-cEEEEeC-EEEECCCCc
Confidence            334579999999999999887  46788888874344 3578996 888888874

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=84.03  E-value=2  Score=43.87  Aligned_cols=62  Identities=31%  Similarity=0.339  Sum_probs=41.3

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCC-EEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~-~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      .|+.-++++-.-.+..+++|++|..+.+++ ....|+..+.+|...++.|+ .||||.|  .+|.|
T Consensus        99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i  161 (341)
T PF13434_consen   99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI  161 (341)
T ss_dssp             HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred             HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence            577666666565588899999999986433 45566666668888999996 8999999  66654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.37  E-value=2.6  Score=45.65  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      +.+.+++++.+++|+.|..+  ++ ..+|.+.+..|++.+++|+ .||.|+|+. +.+|+-
T Consensus       165 a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~  220 (502)
T PRK13369        165 AAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH  220 (502)
T ss_pred             HHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence            45678999999999999876  33 4567776555777899996 999999974 566654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=83.12  E-value=2.7  Score=44.05  Aligned_cols=56  Identities=29%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.|++++.++.|+.|+.++ ++++.+|+..  +|   +++|+ .||+|||+. ++.|+...|
T Consensus       193 a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~--~g---~i~a~-~vVvaagg~-~~~l~~~~g  248 (407)
T TIGR01373       193 ADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT--RG---FIGAK-KVGVAVAGH-SSVVAAMAG  248 (407)
T ss_pred             HHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC--Cc---eEECC-EEEECCChh-hHHHHHHcC
Confidence            456799999999999997643 3566677654  44   58886 799999985 455554333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=83.09  E-value=3.4  Score=43.42  Aligned_cols=51  Identities=27%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ..+.+++|+.++.|++|..+  ++++++|+..  ++   +++|+ .||+|+|+. +..|+
T Consensus       211 ~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~--~~---~~~a~-~VV~a~G~~-~~~l~  261 (416)
T PRK00711        211 AEQLGVKFRFNTPVDGLLVE--GGRITGVQTG--GG---VITAD-AYVVALGSY-STALL  261 (416)
T ss_pred             HHHCCCEEEcCCEEEEEEec--CCEEEEEEeC--Cc---EEeCC-EEEECCCcc-hHHHH
Confidence            45679999999999999876  4566666542  23   57886 899999984 45554

>PRK07208 hypothetical protein; Provisional

Probab=82.53  E-value=3.5  Score=44.30  Aligned_cols=58  Identities=21%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ....+.+|++++.|++|..++ ++.+++|.+.+.+|+..++.|+ .||++.-.-...++|
T Consensus       228 l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l  285 (479)
T PRK07208        228 LEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAAL  285 (479)
T ss_pred             HHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhc
Confidence            344578999999999999885 3456666665456776778896 788877765555554

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=82.43  E-value=3.1  Score=45.15  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      +...+++|+.+++|++|..+  ++. .+|.+.+ .+|+..+|+|+ .||+|+|+. +.+|+-
T Consensus       165 A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~  221 (508)
T PRK12266        165 AAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPW-VKQFLD  221 (508)
T ss_pred             HHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCcc-HHHHHh
Confidence            45679999999999999876  343 4677764 25777889996 999999975 556653

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=80.63  E-value=5.7  Score=40.76  Aligned_cols=90  Identities=18%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEE
Q psy10663        153 STFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF  232 (572)
Q Consensus       153 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~  232 (572)
                      +.|.+-++.+|++...-     ..|.-.|   ..+.+ .+-...++.. .+..|++|++++.|.+|..++     .+-.+
T Consensus        82 ~d~i~~~e~~Gi~~~e~-----~~Gr~Fp---~sdkA-~~Iv~~ll~~-~~~~gV~i~~~~~v~~v~~~~-----~~f~l  146 (408)
T COG2081          82 EDFIDWVEGLGIALKEE-----DLGRMFP---DSDKA-SPIVDALLKE-LEALGVTIRTRSRVSSVEKDD-----SGFRL  146 (408)
T ss_pred             HHHHHHHHhcCCeeEEc-----cCceecC---Cccch-HHHHHHHHHH-HHHcCcEEEecceEEeEEecC-----ceEEE
Confidence            45666777889875411     1122222   11222 2223345554 567899999999999998873     23334


Q ss_pred             EcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        233 RNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       233 ~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      ...+|+  +|+++ .+|||.|..--|++
T Consensus       147 ~t~~g~--~i~~d-~lilAtGG~S~P~l  171 (408)
T COG2081         147 DTSSGE--TVKCD-SLILATGGKSWPKL  171 (408)
T ss_pred             EcCCCC--EEEcc-EEEEecCCcCCCCC
Confidence            434666  88997 89999999888864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=80.44  E-value=3.4  Score=44.42  Aligned_cols=57  Identities=19%  Similarity=0.366  Sum_probs=42.3

Q ss_pred             CCCCeEEeccceEEEEEEeCC--CC-EEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        203 DKNTVQVSKNSEVTKLCFDET--KT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~--~~-~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ++.+.+|++++.|++|+.+.+  +. ++++|++.+.++ ..++.|+ .||+|..+-...+||
T Consensus       230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLL  289 (474)
T ss_pred             HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhC
Confidence            347899999999999998742  22 488888852222 2357886 899999988888776

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=80.25  E-value=5.4  Score=41.24  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE
Q psy10663        154 TFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR  233 (572)
Q Consensus       154 ~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~  233 (572)
                      .+.+-++++|++...-     ..|.-++.    . .+.+....-|...+++.|++|++++.|+.|  ++  +. ..|.+.
T Consensus        58 d~~~fF~~~Gi~~~~e-----~~grvfP~----S-~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~  122 (376)
T TIGR03862        58 ALQDWARGLGIETFVG-----SSGRVFPV----E-MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETP  122 (376)
T ss_pred             HHHHHHHHCCCceEEC-----CCCEECCC----C-CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEEC
Confidence            3455566889874311     12322221    1 233333344444467899999999999999  32  22 345443


Q ss_pred             cCCCceeEeeccceeEeccCcchhhHH
Q psy10663        234 NPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       234 ~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                        .+ ...++|+ .||||+|..-.|++
T Consensus       123 --~~-~~~~~a~-~vIlAtGG~s~p~~  145 (376)
T TIGR03862       123 --DG-QSTIEAD-AVVLALGGASWSQL  145 (376)
T ss_pred             --CC-ceEEecC-EEEEcCCCcccccc
Confidence              22 2358896 89999999877764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	572
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		2e-26
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		6e-20
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		8e-20
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		8e-20
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		3e-18
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		2e-16
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		1e-08
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		7e-07
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		2e-06
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		3e-06
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		3e-06

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 136/575 (23%), Positives = 238/575 (41%), Gaps = 50/575 (8%)
Query: 1   CLTAKLLAQSGCSVLILEAG--PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
            + A+L      SVL+LEAG   +  +    P +    + +S  DW +   +   Y    
Sbjct: 16  VVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGY---- 71
Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNM-TGWTYSDMDAIYTRIERT- 116
               +   + R+LGGSS ++ M+  RGS  D++R+  +    GW + ++     + E   
Sbjct: 72  NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVV 131
Query: 117 -KLDXXXXXXXXXXXXXDNDGXXXXXXXX--XXXXNLLRSTFSKAFEDIGFKSPDTFTVS 173
              D               +G              + + +T  +  E+  F +PD  T  
Sbjct: 132 PPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEF-FFNPDMGT-G 189
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTG---V 230
             +GI+  +  + +GQR  +S+ +LR  + +  + V  N++VTKL    T   +     V
Sbjct: 190 HPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCV 249
Query: 231 EFRNPQGK-TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
           E+   +G  T  V A +EVVL+A S+ +  +LQ SG+GD   LS   I  + N P VG+ 
Sbjct: 250 EYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRN 309
Query: 290 LSLH-----PMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYL---- 340
           LS H       F   + TF      S   N  + ++   RTG  T + ++N + +L    
Sbjct: 310 LSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTAL-IANHLAWLRLPS 368
Query: 341 -DTDFKGNPDVAV---TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGL 396
             + F+  PD A    + ++    +T+F            D        NA        L
Sbjct: 369 NSSIFQTFPDPAAGPNSAHW----ETIFSNQWFHPAIPRPDTGSFMSVTNA--------L 416
Query: 397 VSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTN 456
           +S  P A G +++ +++P   P I     + E DI  ++ AVK   R +  + + +F   
Sbjct: 417 IS--PVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIR 474
Query: 457 SVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFS 516
                +++        +      I+  + T  HP GT  M P      VV PD +V G  
Sbjct: 475 PFDPRLRDPTD-----DAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVD 529
Query: 517 NLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQS 551
            LR+V   ++P      +     ++ ++ A  I++
Sbjct: 530 GLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKA 564

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
           DG R  +S  ++  I ++    +       +L FD  + + TGV+  +   G T ++ A 
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
            EVVL+  +I++ ++L  SG+G AA L+++ I ++ + PGVG+ L  HP   G+     K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
            P             +   + ++ +IG+                      + P +D L  
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
                      DL+  +  V  D   L  G        SL P     ++ G V + S D 
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
              P +  RY    E  D++ ++  ++    +        +    +   ++       Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
           +E  +  I+    T  HP GT+RMG   D ++ + P+ RV G + LRV    V+P  +  
Sbjct: 450 DEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
           + +   +M+ ERCA  I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
           DG R  +S  ++  I ++    +       +L FD  + + TGV+  +   G T ++ A 
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
            EVVL+  +I++ ++L  SG+G AA L+++ I ++ + PGVG+ L  HP   G+     K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
            P             +   + ++ +IG+                      + P +D L  
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
                      DL+  +  V  D   L  G        SL P     ++ G V + S D 
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
              P +  RY    E  D++ ++  ++    +        +    +   ++       Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
           +E  +  I+    T  HP GT+RMG   D ++ + P+ RV G + LRV    V+P  +  
Sbjct: 450 DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
           + +   +M+ ERCA  I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
           DG R  +S  ++  I ++    +       +L FD  + + TGV+  +   G T ++ A 
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
            EVVL+  +I++ ++L  SG+G AA L+++ I ++ + PGVG+ L  HP   G+     K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
            P             +   + ++ +IG+                      + P +D L  
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
                      DL+  +  V  D   L  G        SL P     ++ G V + S D 
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
              P +  RY    E  D++ ++  ++    +        +    +   ++       Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
           +E  +  I+    T  HP GT+RMG   D ++ + P+ RV G + LRV    V+P  +  
Sbjct: 450 DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
           + +   +M+ ERCA  I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 123/586 (20%), Positives = 215/586 (36%), Gaps = 71/586 (12%)
Query: 2   LTAKLLAQSGCSVLILEAGPDAP-----ISTAIPAMWHESIQDSKLDWGFVLESNPSYGL 56
           +  +L      +VLI+EAG   P     I+T   AM    +++SK DW +         +
Sbjct: 21  VAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAM---DLRNSKYDWAY------KTTM 71
Query: 57  GLKDNVVRLNQ----ARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTR 112
             +D+  R+ +     + LGGSS +N      G +  +++WE      WT+  +   Y R
Sbjct: 72  VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPL-VPYLR 130
Query: 113 IERTKLDXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTV 172
              T  D                                R   +KA++ +G    +    
Sbjct: 131 KSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYD 190
Query: 173 SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF 232
            +  G+      +  GQR   S  FL  +K+K  + +       +L  +E      GV  
Sbjct: 191 GEMDGLTHCCDTIYRGQR---SGSFL-FVKNKPNITIVPEVHSKRLIINEADRTCKGVTV 246
Query: 233 RNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSL 292
               G  +   A+REV+L+     + ++L  SG+G    LS++ I  + +   VG+ L  
Sbjct: 247 VTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMD 306
Query: 293 HPMFFGLSYTFTKTPVSSYTINEIIYEYLTQR----------------TGRFTDIGMSNF 336
           HP        F       + +++++  +  +R                +G    +G    
Sbjct: 307 HP-----GVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRI 361
Query: 337 IGYLDTDFK----------GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVN 386
             YL+ D +           +P   + Q +F   D + + G    W+             
Sbjct: 362 DKYLEKDAEYRKAKAANGGKDPFSPLGQPHF-ELDFVCMFGTAFQWHFP-------TPKT 413
Query: 387 ADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKM-VDRVM 445
            D   +++ LV       G V +NS DP + P I    +  + DI  +   ++   D + 
Sbjct: 414 GDHLTVVVDLVRPISDP-GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLF 472
Query: 446 KYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAV 505
           K   FK+   +    E+   +  +       RC   +      HPTGT R+    D   V
Sbjct: 473 KGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAF------HPTGTARLSKNID-QGV 525
Query: 506 VGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQS 551
           V P  +V+G   LRV    VIP+            + E+CA  I++
Sbjct: 526 VDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKA 571

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 118/553 (21%), Positives = 213/553 (38%), Gaps = 81/553 (14%)
Query: 2   LTAKLLAQSGCSVLILEAGPDAPISTAI--PAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
           L A+L       VL++EAG + P    I  PA W  ++Q    DW +  E+      G  
Sbjct: 32  LAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAW-PALQGRSYDWDYRTEAQ----AGTA 85
Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTG---WTYSDMDAIYTRIERT 116
                  + R++GGSS ++ M + RG   D++ W  ++ +G   W + ++  ++  IE  
Sbjct: 86  GRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW--VDASGDRRWGWDELLPVFQAIEDH 143
Query: 117 KLDXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHV 176
            L                              + L   F +A   +G    +     + +
Sbjct: 144 PLGGDGIHGKGGPLPIH---------LPADEVSPLARAFIEAGASLGLPRLEGHNSGEMI 194
Query: 177 GIAPPMYYLKDGQRMIASSIFL-RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235
           G+ P    ++DG+R+ A+  +L +A++ +  + +   S V +L  +    +V  +E    
Sbjct: 195 GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGR 252
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
           QG + +V A+ ++VL A ++ S  +L +SG+G   +L    +  + ++P +G+ L  H +
Sbjct: 253 QG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLL 310
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTD---FKGNPDVAV 352
             G  Y   K PV    +                    S  + Y+  D     G P++ V
Sbjct: 311 GAGNLYAARK-PVPPSRLQH------------------SESMAYMRADSFTAAGQPEIVV 351
Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-LIIGLVSLCPKAEGVVEINS 411
                P                   + E F    A     L+ G+    P + G V I+ 
Sbjct: 352 GCGVAPI------------------VSESFPAPAAGSAYSLLFGITH--PTSRGSVRISG 391
Query: 412 NDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRD-FKNFQTNSVQLEIKECAKCKY 470
            +   +  I  P Y +    +          R + +RD    ++   +   +        
Sbjct: 392 PE-LGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL---LPGTPNSAA 447
Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
           + +++    I     T +HP GT RMG   DP AVV  + R+    NL VV   ++P   
Sbjct: 448 EMDDF----IARSVITHHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLT 501
Query: 531 VTDSSAVALMLAE 543
                A  L +AE
Sbjct: 502 AGPIHAAVLAIAE 514

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 124/568 (21%), Positives = 203/568 (35%), Gaps = 50/568 (8%)
Query: 4   AKLLAQSGCSVLILEAGP----DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
           A+L      SVL++E+G       PI   + A  +  I  S +D  +      +  L   
Sbjct: 36  ARLTENPNISVLVIESGSYESDRGPIIEDLNA--YGDIFGSSVDHAY-----ETVELATN 88
Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKL 118
           +    +     LGGS+++N     R  +   + WE +    GW + ++ A   + ER + 
Sbjct: 89  NQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARA 148
Query: 119 DXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAF----EDIGFKSPDTFTVSD 174
                            G                S   KA     ED G  +   F   D
Sbjct: 149 PNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD 208
Query: 175 HVGIAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVE 231
             G++  P    +D  R  A+  +L     +  +QV     V K+   +  T  +  GVE
Sbjct: 209 PHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVE 268
Query: 232 FRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLS 291
           F   +G T  V A  EV+LAA S  S  IL+ SG+G  ++L    I  V +LP VG  L 
Sbjct: 269 FGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQ 327
Query: 292 LHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVA 351
                   +    ++ ++S    +    +       F D         L+T  +   + A
Sbjct: 328 DQ------TTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHE-LLNTKLEQWAEEA 380
Query: 352 VTQYYFPAQDTLFLR-GHLKAWNVNDDLV--ERFVKVNADKPILIIGLVSLCPKAEGVVE 408
           V +  F     L ++  + + W VN ++   E F+       +    +  L P   G V 
Sbjct: 381 VARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAG---VASFDVWDLLPFTRGYVH 437
Query: 409 INSNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRV------MKYRDFKNFQTNSVQLE 461
           I   DP  +     P Y   E D+     A ++   +        Y   +    +++  +
Sbjct: 438 ILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYD 497
Query: 462 IKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVV 521
               A  +Y         I Y      H  GT  M  P +   VV    RV G   LRV+
Sbjct: 498 ADLSAWTEY---------IPYHFRPNYHGVGTCSM-MPKEMGGVVDNAARVYGVQGLRVI 547
Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFI 549
              + P +M +    V   +A + +  I
Sbjct: 548 DGSIPPTQMSSHVMTVFYAMALKISDAI 575

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 203 DKNTVQVSKNSEVTKLCFDETKTKVT--GVEFRNPQGKTIK--VNANREVVLAANSINSV 258
           D N ++V+ ++ V K+ F    + VT  GV +++  G   +  V    EV+++A  I S 
Sbjct: 205 DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSP 264
Query: 259 RILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 297
           ++L  SGVG  + LS  NIP+V + P VG+ L  +P  F
Sbjct: 265 QLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 303

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 8/228 (3%)
Query: 65  LNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDXXXX 123
           +   + LGGS++IN     R  +   + WE +  M GW + +M     + E  +      
Sbjct: 98  IKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQ 157
Query: 124 XXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFED----IGFKSPDTFTVSDHVGIA 179
                       G                S   KA  +    +G      F      G++
Sbjct: 158 LAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVS 217
Query: 180 PPMYYLKDGQ-RMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNPQ 236
             M  L + Q R+ A+  +L     ++ +++     V K+ F +T +  +  GV F   +
Sbjct: 218 MIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNK 277
Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP 284
                V A  EV+LAA S  S  IL+ SG+G  ++L + N+  + +LP
Sbjct: 278 AVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP 325

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
           DNV    + RVLGG+SIIN  ++ R +   Y    G++   W    ++  Y  +E T + 
Sbjct: 96  DNV----RGRVLGGTSIINAGVYARANTSIYSA-SGVD---WDMDLVNQTYEWVEDTIV- 146
Query: 120 XXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGI- 178
                                           +S    AF + G      F++    G  
Sbjct: 147 ------------------------YKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTR 182
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQG 237
                +   G R  A  +  +   + N ++V  ++ V K+ F        TGV +R+  G
Sbjct: 183 ITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG 240
Query: 238 KTIK--VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
              +  V +  EV+++A +I + ++L  SGVG  + LS  NIP+V + P VG+ L  +P 
Sbjct: 241 TPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPR 300
Query: 296 FF 297
            F
Sbjct: 301 NF 302

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
           DNV    + RVLGG+SIIN  ++ R +   Y    G++   W    ++  Y  +E T + 
Sbjct: 96  DNV----RGRVLGGTSIINAGVYARANTSIYSA-SGVD---WDMDLVNQTYEWVEDTIV- 146
Query: 120 XXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGI- 178
                                           +S    AF + G      F++    G  
Sbjct: 147 ------------------------YKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTR 182
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK-TKVTGVEFRNPQG 237
                +   G R  A  +  +   + N ++V  ++ V K+ F        TGV +R+  G
Sbjct: 183 ITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG 240
Query: 238 KTIK--VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
              +  V +  EV+++A +I + ++L  SGVG  + LS  NIP+V + P VG+ L  +P 
Sbjct: 241 TPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPR 300
Query: 296 FF 297
            F
Sbjct: 301 NF 302

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	572
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	3e-90
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	2e-84
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-84
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-81
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-76
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	5e-73
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-71
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	5e-64
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-24
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	3e-19
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	8e-12
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	6e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	8e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	8e-04

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  287 bits (738), Expect = 3e-90
 Identities = 125/576 (21%), Positives = 218/576 (37%), Gaps = 58/576 (10%)

Query: 2   LTAKLLAQSGCSVLILEAGP--DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
           + A+L      SVL+LEAG   +  +    P +    + +S  DW +   +      G  
Sbjct: 17  VAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYN 72

Query: 60  DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTKL 118
              +   + R+LGGSS ++ M+  RGS  D++R+  +    GW + ++     + E    
Sbjct: 73  GRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVP 132

Query: 119 --DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDT--FTVSD 174
             D   T  E        +G+V+I+         L        ++   +           
Sbjct: 133 PADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQSEEFFFNPDMGTGH 190

Query: 175 HVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKV-----TG 229
            +GI+  +  + +GQR  +S+ +LR  + +  + V  N++VTKL    T   +       
Sbjct: 191 PLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVE 250

Query: 230 VEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
              +     T  V A +EVVL+A S+ +  +LQ SG+GD   LS   I  + N P VG+ 
Sbjct: 251 YAEQE-GAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRN 309

Query: 290 LSLHPMFFGL-----SYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF 344
           LS H +         + TF      S   N  + ++   RTG  T   ++N + +L    
Sbjct: 310 LSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLT-ALIANHLAWLRL-- 366

Query: 345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAE 404
              P  +     FP         H +     +      +        + +    + P A 
Sbjct: 367 ---PSNSSIFQTFPDPAAGPNSAHWETIFS-NQWFHPAIPRPDTGSFMSVTNALISPVAR 422

Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
           G +++ +++P   P I     + E DI  ++ AVK   R +  + + +F           
Sbjct: 423 GDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIR----PFDP 478

Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
             +     +      I+  + T  HP GT  M P      VV PD +V G   LR+V   
Sbjct: 479 RLRDP-TDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIV--- 534

Query: 525 VIPVEMVTDSS-----------AVALMLAERCATFI 549
                   D S               ++ ++ A  I
Sbjct: 535 --------DGSILPFAPNAHTQGPIYLVGKQGADLI 562

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  272 bits (699), Expect = 2e-84
 Identities = 115/586 (19%), Positives = 196/586 (33%), Gaps = 75/586 (12%)

Query: 2   LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
           +  +L      +VLI+EAG    +       P+     +++SK DW +            
Sbjct: 21  VAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAM-DLRNSKYDWAYKTTMVR----RD 75

Query: 59  KDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERT 116
               +     R   LGGSS +N      G +  +++WE      WT+  +     +    
Sbjct: 76  DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATY 135

Query: 117 KLDTVRTETESETVTVDNDGTVTITTIKTE-KINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
             D      E E +     G + I+  +   ++   R   +KA++ +G    +     + 
Sbjct: 136 HDDPRLYSPELEKIGG--GGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEM 193

Query: 176 VGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235
            G+      +  GQR   S  FL      N + +       +L  +E      GV     
Sbjct: 194 DGLTHCCDTIYRGQR---SGSFLFVKNKPN-ITIVPEVHSKRLIINEADRTCKGVTVVTA 249

Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
            G  +   A+REV+L+     + ++L  SG+G    LS++ I  + +   VG+ L  HP 
Sbjct: 250 AGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPG 309

Query: 296 FFGLSYTFTKTPVSSYTIN--------EIIYEYLTQRTGRFTDIGMSNF---IGYLDTDF 344
                    K       +          ++  Y   R+G       S     +G+   D 
Sbjct: 310 -VPFVLR-VKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVG----SGLLELVGFPRIDK 363

Query: 345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERF-VKVNADKPILIIG---LVSLC 400
               D    +                  +   D V  F        P    G    V + 
Sbjct: 364 YLEKDAEYRKAKAANGGKDPFSPLG-QPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVD 422

Query: 401 ---PKA-EGVVEINSNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVM-KYRDFKNFQ 454
              P +  G V +NS DP + P I    +   + DI  +   ++    ++ K   FK+  
Sbjct: 423 LVRPISDPGEVTLNSADPFQQPNI-NLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLV 481

Query: 455 TNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNG 514
            +    E          S++    A+     T  HPTGT R+   +    VV P  +V+G
Sbjct: 482 ES----EYPWEM--PLDSDKEMHRAVLDRCQTAFHPTGTARLS-KNIDQGVVDPKLKVHG 534

Query: 515 FSNLRVVGEPVIPVEMVTDSS-----------AVALMLAERCATFI 549
              LRV            D+S                + E+CA  I
Sbjct: 535 IKKLRVA-----------DASVIPIIPDCRIQNSVYAVGEKCADMI 569

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  273 bits (700), Expect = 2e-84
 Identities = 100/568 (17%), Positives = 180/568 (31%), Gaps = 69/568 (12%)

Query: 13  SVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQAR 69
            VL++E G    +       P  +   I  + +D  +   + P     + +    +   +
Sbjct: 50  KVLVIEKGFYESNDGAIIEDPNAYG-QIFGTTVDQNY--LTVP----LINNRTNNIKAGK 102

Query: 70  VLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTKLDTVRTETESE 128
            LGGS++IN     R  +   + WE +  M GW + +M     + E  +  T        
Sbjct: 103 GLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGH 162

Query: 129 TVTVD---NDGTVTITTIKTEKI-NLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAP-PMY 183
           +        +GTV        +  + +          +G      F      G++     
Sbjct: 163 SFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNN 222

Query: 184 YLKDGQRMIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTI 240
             ++  R+ A+  +L       N +++     V K+ F +T    +  GV F   +    
Sbjct: 223 LDENQVRVDAARAWLLPNYQRSN-LEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNF 281

Query: 241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
            V A  EV+LAA S  S  IL+ SG+G  ++L + N+  + +LP VG  +        +S
Sbjct: 282 DVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTT-TTVS 339

Query: 301 Y------TFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQ 354
                        V      E   +Y  Q         +  +         G  +V   +
Sbjct: 340 SRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNT-KLDQWAEETVAR-GGFHNVTALK 397

Query: 355 YYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDP 414
             +       L       + +    E F+     +  +   L  L P   G V I S+DP
Sbjct: 398 VQYENYRNWLL-------DEDVAFAELFM---DTEGKINFDLWDLIPFTRGSVHILSSDP 447

Query: 415 TKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK-ECAKCKYQS 472
                   P +   E D+     A K+   +      K +       E        +  +
Sbjct: 448 YLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG----ETLPGYNLVQNAT 503

Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
              +   +        H   +  M    +   VV    +V G   LRV+           
Sbjct: 504 LSQWSDYVLQNFRPNWHAVSSCSMM-SRELGGVVDATAKVYGTQGLRVI----------- 551

Query: 533 DSS-----------AVALMLAERCATFI 549
           D S            +   +A + A  I
Sbjct: 552 DGSIPPTQVSSHVMTIFYGMALKVADAI 579

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  265 bits (679), Expect = 2e-81
 Identities = 118/572 (20%), Positives = 194/572 (33%), Gaps = 54/572 (9%)

Query: 2   LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
             A+L      SVL++E+G    D          +   I  S +D  +  E+     L  
Sbjct: 34  TAARLTENPNISVLVIESGSYESDRGPIIEDLNAYG-DIFGSSVDHAY--ETVE---LAT 87

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTK 117
            +    +     LGGS+++N     R  +   + WE +    GW + ++ A   + ER +
Sbjct: 88  NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147

Query: 118 LDTVRTETESETVTVD---NDGTVTITTIKT-EKINLLRSTFSKAFEDIGFKSPDTFTVS 173
               +               +GTV      T +  + +      A ED G  +   F   
Sbjct: 148 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCG 207

Query: 174 DHVGIAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGV 230
           D  G++  P    +D  R  A+  +L     +  +QV     V K+   +  T  +  GV
Sbjct: 208 DPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 267

Query: 231 EFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRL 290
           EF   +G T  V A  EV+LAA S  S  IL+ SG+G  ++L    I  V +LP VG  L
Sbjct: 268 EFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNL 326

Query: 291 SLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDV 350
                   +    T     +       +    +  G +++         L+T  +   + 
Sbjct: 327 QDQTT-ATVRSRITSA--GAGQGQAAWFATFNETFGDYSEKAH----ELLNTKLEQWAEE 379

Query: 351 AVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEIN 410
           AV +  F     L ++       + +  V           +    +  L P   G V I 
Sbjct: 380 AVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHIL 439

Query: 411 SNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
             DP  +     P Y   E D+     A ++   +      + +       E        
Sbjct: 440 DKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAG----ETIPGDNLA 495

Query: 470 YQSE-EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPV 528
           Y ++   +   I Y      H  GT  M  P +   VV    RV G   LRV+       
Sbjct: 496 YDADLSAWTEYIPYHFRPNYHGVGTCSMM-PKEMGGVVDNAARVYGVQGLRVI------- 547

Query: 529 EMVTDSS-----------AVALMLAERCATFI 549
               D S            V   +A + +  I
Sbjct: 548 ----DGSIPPTQMSSHVMTVFYAMALKISDAI 575

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  251 bits (644), Expect = 1e-76
 Identities = 114/572 (19%), Positives = 206/572 (36%), Gaps = 97/572 (16%)

Query: 2   LTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
           + A+L      SV ++EAGP D  +   +       + +S  DW +     P        
Sbjct: 28  VAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY--PIEPQENGNS-- 83

Query: 61  NVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTK 117
               +  AR  V+GG S  N  I     + D + WE     TGW       +Y R+E   
Sbjct: 84  ---FMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLET-- 138

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFT-VSDHV 176
                 +   +     + G V +  +  +  +        A E  G       T  +   
Sbjct: 139 ----NEDAGPDAPHHGDSGPVHLMNVPPK--DPTGVALLDACEQAGIPRAKFNTGTTVVN 192

Query: 177 GIAPP-MYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RN 234
           G     +    DG R  +S  ++  I ++    +       +L FD  + + TGV+   +
Sbjct: 193 GANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDS 251

Query: 235 PQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
             G T ++ A  EVVL+  +I++ ++L  SG+G AA L+++ I ++ + PGVG+ L  HP
Sbjct: 252 AFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311

Query: 295 MFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV-- 352
               + +   K P+ + +               + +IG+  F             +    
Sbjct: 312 EGV-VQFE-AKQPMVAESTQ-------------WWEIGI--FT-------PTEDGLDRPD 347

Query: 353 TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
              ++      +    H                    +    +       ++ G V + S
Sbjct: 348 LMMHYGSVPFDMNTLRHGYP---------------TTENGFSLTPNVTHARSRGTVRLRS 392

Query: 412 NDPTKNPTI--RYPLYTEEE-DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC 468
            D    P +  RY     E  D++ ++  ++    +        +       E+    + 
Sbjct: 393 RDFRDKPMVDPRY-FTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR----ELSPGVEA 447

Query: 469 KYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPV 528
             Q++E  +  I+    T  HP GT+RMG   D ++ + P+ RV G + LRV        
Sbjct: 448 --QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVA------- 498

Query: 529 EMVTDSS-----------AVALMLAERCATFI 549
               D+S              +M+ ERCA  I
Sbjct: 499 ----DASVMPEHVTVNPNITVMMIGERCADLI 526

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  241 bits (618), Expect = 5e-73
 Identities = 111/570 (19%), Positives = 199/570 (34%), Gaps = 103/570 (18%)

Query: 2   LTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
           L A+L       VL++EAG          PA W  ++Q    DW +  E+      G   
Sbjct: 32  LAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAW-PALQGRSYDWDYRTEAQA----GTAG 86

Query: 61  NVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKL- 118
                 + R++GGSS ++ M + RG   D++ W +      W + ++  ++  IE   L 
Sbjct: 87  RAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG 146

Query: 119 -DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
            D +              G + I     E  + L   F +A   +G    +     + +G
Sbjct: 147 GDGIH----------GKGGPLPIHLPADEV-SPLARAFIEAGASLGLPRLEGHNSGEMIG 195

Query: 178 IAPPMYYLKDGQRMIASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
           + P    ++DG+R+ A+  +L  A++ +  + +   S V +L  +  +  V  +E    +
Sbjct: 196 VTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQ--VRSLEVVG-R 252

Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF 296
             + +V A  ++VL A ++ S  +L +SG+G   +L    +  + ++P +G+ L  H + 
Sbjct: 253 QGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLG 311

Query: 297 FGLSYTFTK-TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT-- 353
            G  Y   K  P S    +E         +  +                + +   A    
Sbjct: 312 AGNLYAARKPVPPSRLQHSE---------SMAY---------------MRADSFTAAGQP 347

Query: 354 --QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
                                 +  +        +A      +      P + G V I+ 
Sbjct: 348 EIVVGCGVAP------------IVSESFPAPAAGSA----YSLLFGITHPTSRGSVRISG 391

Query: 412 NDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
            +      I  P Y     D +    A++    +    +   ++        +E      
Sbjct: 392 PELGDRLIID-PAYLQTGRDRERFRRALEASRTIGHRDELAGWRE-------RELLPGTP 443

Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
            S       I     T +HP GT RMG   DP AVV  + R+    NL VV         
Sbjct: 444 NSAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVV--------- 492

Query: 531 VTDSS-----------AVALMLAERCATFI 549
             D+S           A  L +AE  A   
Sbjct: 493 --DASIMPNLTAGPIHAAVLAIAETFARQY 520

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  238 bits (609), Expect = 1e-71
 Identities = 99/561 (17%), Positives = 184/561 (32%), Gaps = 121/561 (21%)

Query: 13  SVLILEAG--PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARV 70
            VL+LE G  P A  +      +     + + +              + ++ +   + RV
Sbjct: 50  KVLVLERGSLPTAYPNVLTADGFV---YNLQQEDDGKTPVER----FVSEDGIDNVRGRV 102

Query: 71  LGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETV 130
           LGG+SIIN  ++ R +   Y          W    ++  Y  +E T +    +       
Sbjct: 103 LGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYKPNS------- 151

Query: 131 TVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQR 190
                                +S    AF + G      F++    G         +   
Sbjct: 152 ------------------QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGT 193

Query: 191 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE-TKTKVTGVEFR--NPQGKTIKVNANRE 247
             A+   L      N ++V  ++ V K+ F        TGV +R  N       V +  E
Sbjct: 194 RHAADELLNKGNSNN-LRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGE 252

Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP 307
           V+++A +I + ++L  SGVG  + LS  NIP+V + P VG+ L  +P  F ++      P
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INIL-PPNP 310

Query: 308 VSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQY-YFPAQDTLFLR 366
           +    +               T +G+SN   +    F   P      + +FP+       
Sbjct: 311 IEPTIV---------------TVLGISN--DFYQCSFSSLPF-TTPPFGFFPSSS----- 347

Query: 367 GHLKAWNVNDDLVERFVKVNADKPILIIGLVSLC-PKAEGVVEI-NSNDPTKNPTIRYPL 424
                          F                +  P + G + + +S++   +P +++  
Sbjct: 348 --------YPLPNSTFAH----------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNY 389

Query: 425 YTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK-----YQSEEYYRCA 479
           Y+   D+ + ++ +K +  ++     K ++   +                   +  +   
Sbjct: 390 YSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETF 449

Query: 480 IKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS---- 535
            +    +  H  G   +G       V+  DFRV G + LRVV           D S    
Sbjct: 450 CRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVV-----------DGSTFPY 492

Query: 536 -------AVALMLAERCATFI 549
                     LML       I
Sbjct: 493 TPASHPQGFYLMLGRYVGIKI 513

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  218 bits (557), Expect = 5e-64
 Identities = 94/597 (15%), Positives = 181/597 (30%), Gaps = 125/597 (20%)

Query: 1   CLTAKLLAQSGCSVLILEAGP-------DAPISTAIPAMWHESIQDSKLDWGFVLESNPS 53
            + A  L+++G  VL+LE G           ++    +          L      +SNP 
Sbjct: 20  IIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP- 78

Query: 54  YGLGLKDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYT 111
                K     +      ++GG + +N  ++   +  D+    G      ++++     +
Sbjct: 79  -FWWCK----DITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW---PSSWTNHAPYTS 130

Query: 112 RIERTKLDTVRTETESETVTVD---NDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPD 168
           ++      T            D    DG   +     +  N++ S   K          D
Sbjct: 131 KLSSRLPST------------DHPSTDGQRYLE----QSFNVV-SQLLKGQGYNQATIND 173

Query: 169 TFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVT 228
                DH       +   +G+R    + +L+    +       N  V+ +  + ++  + 
Sbjct: 174 NPNYKDH-VFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQ--IL 230

Query: 229 GVEFRNP---QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP- 284
           GV+  +P       I V     V+L+A +  + RIL QSG+G   ++             
Sbjct: 231 GVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAAL 290

Query: 285 ---------GVGKRLSLHPMFFGLSYTFTKTPVSSYTINE--------IIYEYLTQRTGR 327
                     VG     +P    L +T   +  +     +           +YL  ++G 
Sbjct: 291 PPQNQWINLPVGMNAQDNPSIN-LVFT-HPSIDAYENWADVWSNPRPADAAQYLANQSGV 348

Query: 328 FTDIGMSNFIGYLDTDFKGNPDVAV--TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVK 384
           F   G S  + +         D      Q    P   ++                   + 
Sbjct: 349 FA--GASPKLNFWRA--YSGSDGFTRYAQGTVRPGAASVNSS----------------LP 388

Query: 385 VNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDR- 443
            NA +   I   +S   ++ G + I++        +  P      D   +L A+  V   
Sbjct: 389 YNASQIFTITVYLSTGIQSRGRIGIDAALRG--TVLTPPWLVNPVDKTVLLQALHDVVSN 446

Query: 444 VMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPL 503
           +           +  Q             EEY        +  +NH   +  +G  S   
Sbjct: 447 IGSIPGLTMITPDVTQ-----------TLEEYVDAYDPA-TMNSNHWVSSTTIG-SSPQS 493

Query: 504 AVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS-----------AVALMLAERCATFI 549
           AVV  + +V G +NL +V           D+               +  AE+ A  I
Sbjct: 494 AVVDSNVKVFGTNNLFIV-----------DAGIIPHLPTGNPQGTLMSAAEQAAAKI 539

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score =  105 bits (262), Expect = 5e-24
 Identities = 85/601 (14%), Positives = 168/601 (27%), Gaps = 102/601 (16%)

Query: 1   CLTAKLLAQSGCSVLILEAGP-----------------------------DAPISTAIPA 31
           C  A+ L  +G  V + + G                                 +S ++P 
Sbjct: 59  CTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPV 118

Query: 32  MWHESIQDSKLDW---GFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQY 88
                   S   W    F + +  +       N+      RV+GG S        R   +
Sbjct: 119 NTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPR---F 175

Query: 89  DYERWEGLNMTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTE 146
           D E+   L         ++ D +YT+ E     T   + +                    
Sbjct: 176 DREQRPLLVKDDADADDAEWDRLYTKAES-YFQTGTDQFKESIRH--------------- 219

Query: 147 KINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNT 206
             NL+ +  ++ ++  G +      ++     +P          +            +  
Sbjct: 220 --NLVLNKLTEEYK--GQRDFQQIPLAAT-RRSPTFVEWSSANTVFDLQNRPNTDAPEER 274

Query: 207 VQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSG 265
             +       ++  +   +++  +   +   G   ++ A    VL A ++++ ++L  SG
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSG 333

Query: 266 VGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEII--YEYLTQ 323
            G     +  N    + LP +G  ++   + F      +   + S   +  I        
Sbjct: 334 FGQLGRPNPAN--PPELLPSLGSYITEQSLVFC-QTVMSTELIDSVKSDMTIRGTPGELT 390

Query: 324 RTGRFTDIGMSNFIGYLDTDFKG--------NPDVAVTQYYFPAQDTLFLRGHLKAWNVN 375
            +  +T    +N       +           +P     +   P   TLF   H     ++
Sbjct: 391 YSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIH 450

Query: 376 DDLVERFVKVNADKPILIIGLVSLC---PKAEGVVEINSN--DPTKNPTIR-YPLYTEEE 429
            D         +    LI+         PK E  +  +    D    P       +    
Sbjct: 451 RDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGR 510

Query: 430 DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNH 489
             K     +  +  +          +    +E                           H
Sbjct: 511 TSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEP----------------------GLVLH 548

Query: 490 PTGTLRMGP-PSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF 548
             GT RMG    +    V  D RV GF NL + G   IP     + +  A+ LA +   +
Sbjct: 549 LGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEY 608

Query: 549 I 549
           I
Sbjct: 609 I 609

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 89.7 bits (222), Expect = 3e-19
 Identities = 82/575 (14%), Positives = 147/575 (25%), Gaps = 122/575 (21%)

Query: 1   CLTAKLLAQSGCSVLILEAGP----DAPISTAIPAMWHESIQDS-----------KLDWG 45
            ++A  L ++G   L+LE G       P       M +   + S              W 
Sbjct: 18  AVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWL 77

Query: 46  FVLESNPSYGLGLKDNV----VRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW 101
            V+  N     G+ D V    + +   R +GG S++N  +     +  +E          
Sbjct: 78  DVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPR---VD 134

Query: 102 TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFED 161
           +    D  + R     +  V                    + +      L + F     D
Sbjct: 135 SSEMYDRYFPRANS--MLRVNHIDTK-WFEDTEWYKFARVSREQAGKAGLGTVFVPNVYD 191

Query: 162 IGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD 221
            G+   +         +A  + Y  +  +      +L A      V +    +V  +   
Sbjct: 192 FGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQT 251

Query: 222 ETKTKVTGVEFRNPQGKT--IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPL 279
           +       VE ++  GK    K  + R + L A S+ S  +L         + ++    L
Sbjct: 252 KDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL---------VRARDTGTL 302

Query: 280 VKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGY 339
                 VG          G   T     +         +            +G+  +   
Sbjct: 303 PNLNSEVGA----GWGPNGNIMTARANHM---------WNPTGAHQSSIPALGIDAWDN- 348

Query: 340 LDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSL 399
                  +  V       PA     L   +  +       +R             G    
Sbjct: 349 ------SDSSVFAEIAPMPA----GLETWVSLYLAITKNPQR-------------GTFVY 385

Query: 400 CPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQ 459
                       +  T    + +              AV     +               
Sbjct: 386 ------------DAATDRAKLNWTRDQNAP-------AVNAAKALFD------------- 413

Query: 460 LEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLR 519
             I +     Y+ + +      +      HP G   +G             RV G+ NL 
Sbjct: 414 -RINKANGTIYRYDLFGTQLKAFADDFCYHPLGGCVLG------KATDDYGRVAGYKNLY 466

Query: 520 VVGEPVIPVEMVTDSSAV--AL---MLAERCATFI 549
           V    +IP      S  V   +    LAER    I
Sbjct: 467 VTDGSLIP-----GSVGVNPFVTITALAERNVERI 496

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 66.7 bits (162), Expect = 8e-12
 Identities = 45/339 (13%), Positives = 89/339 (26%), Gaps = 61/339 (17%)

Query: 3   TAKLLAQSGCSVLILEAGPDAPISTAIP-AMWHESIQDSKLDW---------------GF 46
            A  L Q+G    I+E G       +           D +  W               G 
Sbjct: 26  AALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI 85

Query: 47  VLESNPSYGLGLK--DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYS 104
               +   G+      + +++ Q R +GG S++N  +     +  +E    L        
Sbjct: 86  NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEI--LPSVDS-NE 142

Query: 105 DMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGF 164
             +  + R                         +     ++ +      T  K  +  GF
Sbjct: 143 MYNKYFPRANT----------------GLGVNNIDQAWFESTEWYKFARTGRKTAQRSGF 186

Query: 165 KS---PDTFTVSDHVGIAPP----------MYYLKDGQRMIASSIFLRAIKDKNTVQVSK 211
            +   P+ +        A            + Y  +  +      +L        + ++ 
Sbjct: 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITT 246

Query: 212 NSEVTKLCFDETKTKVTGVEFRNPQGKTI--KVNANREVVLAANSINSVRILQQSGVGDA 269
              VTK+           +E  + QG  +  KV     V  AA S+ + ++L        
Sbjct: 247 LHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL-------- 298

Query: 270 ALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 308
            +  K    L      VG+    +               
Sbjct: 299 -VSMKAQGHLPNLSSQVGEGWGNNGNIMVGRANHMWDAT 336

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC 545
            T HP G + +              R+  +  L VV   ++P  +  +       LAER 
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERN 497

Query: 546 ATFI 549
              I
Sbjct: 498 MDKI 501

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 59/422 (13%), Positives = 122/422 (28%), Gaps = 117/422 (27%)

Query: 149 NLLRSTFSKA-FEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTV 207
           ++ +S  SK   + I   S D  + +           L            L   K +  V
Sbjct: 40  DMPKSILSKEEIDHI-IMSKDAVSGT---------LRLFW--------TLLS--KQEEMV 79

Query: 208 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267
           Q     EV ++ +    + +   E R P   T      R+ +                  
Sbjct: 80  QKFVE-EVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLY----------------N 121

Query: 268 DAALLSKYNIP---LVKNL--------PGVGKRLSLHPMF-FGLSYTFTKTPVSSYTINE 315
           D  + +KYN+        L        P   K + +  +   G +         SY +  
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKT-WVALDVCLSYKVQC 178

Query: 316 I----IYEYLTQRTGRFTD---IGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGH 368
                I+ +L  +     +     +   +  +D ++    D +             LR  
Sbjct: 179 KMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 369 LKAW----------NVND-DLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKN 417
           LK+           NV +      F   N    IL+        + + V +  S   T +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF---NLSCKILLT------TRFKQVTDFLSAATTTH 288

Query: 418 PTI---RYPLYTEE------------------EDIKNILTAVKMV-----DRVMKYRDFK 451
            ++      L  +E                  E +      + ++     D +  + ++K
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 452 NFQTNSVQLEIKECAKCKYQSE--EYYR-CAIKYLSTTTNHPTGTLRM----GPPSDPLA 504
           +   + +   I+        +E  + +   ++     + + PT  L +       SD + 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 505 VV 506
           VV
Sbjct: 407 VV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 78/461 (16%), Positives = 122/461 (26%), Gaps = 164/461 (35%)

Query: 11  GCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQA-- 68
            C +L+        ++  + A     I              P     L    +       
Sbjct: 265 SCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDL 318

Query: 69  --RVLGGS----SIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVR 122
              VL  +    SII + I D  + +D           W + + D + T IE +      
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN----------WKHVNCDKLTTIIESS------ 362

Query: 123 TETESETVTVDNDGTVTITTIKTEKINLLRST-FSKAFEDIG-FKSPDTFTVSDHVGIAP 180
                                    +N+L    + K F+ +  F  P          I  
Sbjct: 363 -------------------------LNVLEPAEYRKMFDRLSVF--P------PSAHI-- 387

Query: 181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
           P   L         S+    +  K+ V V  N        +           + P+  TI
Sbjct: 388 PTILL---------SLIWFDV-IKSDVMVVVNKLHKYSLVE-----------KQPKESTI 426

Query: 241 KVNANREVVLAANSINSVRI-LQQSGVGDAAL----LSKYNIPLVKNLPGVGKRLSLHPM 295
                        SI S+ + L+     + AL    +  YNIP  K              
Sbjct: 427 -------------SIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFD----------- 460

Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYL---------TQRTGRFTDIGMSNFIGYLDTDF-- 344
               S       +  Y      Y ++          +R   F  +       +LD  F  
Sbjct: 461 ----SDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLFRMV-------FLDFRFLE 504

Query: 345 -KGNPDVAVTQYYFPAQDTLF-LRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPK 402
            K   D           +TL  L+ +      ND   ER V            ++   PK
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----------AILDFLPK 554

Query: 403 AEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDR 443
            E   E        +  +R  L  E+E I     A K V R
Sbjct: 555 IE---ENLICSKYTD-LLRIALMAEDEAI--FEEAHKQVQR 589

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANRE 247
           G  +I      +A K++  +    NS V KL  ++    V G            + A + 
Sbjct: 249 GPEII--DTLRKAAKEQG-IDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGA-KS 303

Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVG 287
           VVLA                +  +++ Y  P +K++    
Sbjct: 304 VVLATGGY----------GMNKEMIAYYR-PTMKDMTSSN 332

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257
           L     K  + +  N+   ++  D+ K  V G+  +        V A+  V+LA      
Sbjct: 261 LYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADA-VILATG---- 314

Query: 258 VRILQQSGVG-DAALLSKYNIPLVKNLP 284
                  G   +   ++K + P +K   
Sbjct: 315 -------GFAKNNERVAKLD-PSLKGFI 334

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANRE 247
           G  ++     +   +    V+   +  V  L  D+   +V G+  +   GK + V A R 
Sbjct: 201 GYMLMK--PLVETAEKLG-VRAEYDMRVQTLVTDD-TGRVVGIVAKQY-GKEVAVRARRG 255

Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVG 287
           VVLA  S             +  ++  +  P +   PG  
Sbjct: 256 VVLATGSF----------AYNDKMIEAHA-PRLIGRPGAA 284

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	572
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	100.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.35
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.56
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.77
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	95.44
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	95.3
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	94.87
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.7
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	94.59
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	94.58
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	94.49
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.16
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	93.88
3dme_A	369	Conserved exported protein; structural genomics, P	93.8
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.4
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	93.09
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	92.42
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.22
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	91.92
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.81
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.76
3atr_A	453	Conserved archaeal protein; saturating double bond	91.36
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	91.31
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	90.91
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.59
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.22
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	90.17
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	89.54
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	88.8
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	88.23
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	88.1
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	87.54
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	87.49
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	87.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	86.99
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	86.28
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	86.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	85.8
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	85.78
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	85.5
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	85.05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	84.8
2cul_A	232	Glucose-inhibited division protein A-related PROT	84.03
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	83.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	83.97
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	83.96
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	83.91
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	83.81
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	83.5
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	83.07
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.01
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	82.74
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	82.56
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	82.28
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	82.2
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	81.75
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	81.2
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	80.52
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	80.24

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=1.1e-98  Score=811.47  Aligned_cols=516  Identities=23%  Similarity=0.353  Sum_probs=437.4

Q ss_pred             CccccccCCCCCeEEEEcccCCC--CCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN   78 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~--~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n   78 (572)
                      |+|.||||+++.+|||||+|+..  .+...+|..+.....++.++|.|.++||.    +++++.+.++|||+|||||.||
T Consensus        16 v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~----~~~~r~~~~~rGk~lGGsS~iN   91 (566)
T 3fim_B           16 VVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYNGRSIAYPRGRMLGGSSSVH   91 (566)
T ss_dssp             HHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG----GGTTCCCBCCCBCBTTGGGGTS
T ss_pred             HHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC----CCCCceEeccCCcEEcCccccc
Confidence            58999999889999999999876  34456777665523347899999999998    4788999999999999999999


Q ss_pred             cceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCccc----ccCCCcccccCCCcEEEEccCCccChHHHH
Q psy10663         79 DMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRT----ETESETVTVDNDGTVTITTIKTEKINLLRS  153 (572)
Q Consensus        79 ~~~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~----~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~  153 (572)
                      +|+|.|+++.||+.|++. |+++|+|++|.|||+|+|++..+....    ..++.  .||.+||++++.+.+ ..+ ...
T Consensus        92 ~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~--~hG~~Gp~~v~~~~~-~~~-~~~  167 (566)
T 3fim_B           92 YMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPA--VHGTNGSVSISLPGF-PTP-LDD  167 (566)
T ss_dssp             CCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGG--GSCBSSSEEEBSCSS-CCT-HHH
T ss_pred             ceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCcc--ccCCCCCeeeecCCC-CCH-HHH
Confidence            999999999999999997 999999999999999999998542210    01234  899999999999887 778 999


Q ss_pred             HHHHHHHHc--CCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeC--CC-CEE
Q psy10663        154 TFSKAFEDI--GFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE--TK-TKV  227 (572)
Q Consensus       154 ~~~~a~~~~--G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~--~~-~~a  227 (572)
                      .|.++++++  |++.. |+ |++...|++.++.++.+|.|+++..+||.++.+++||+|++++.|+||++++  ++ ++|
T Consensus       168 ~~~~a~~~~~~G~~~~~d~-n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA  246 (566)
T 3fim_B          168 RVLATTQEQSEEFFFNPDM-GTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAF  246 (566)
T ss_dssp             HHHHHHHHTHHHHCBCSCG-GGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEEC
T ss_pred             HHHHHHHHHhcCCCccCCC-CCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEE
Confidence            999999999  99987 66 8888899999999999999999999999998899999999999999999981  23 699


Q ss_pred             EEEEEEcCCC-ceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCC
Q psy10663        228 TGVEFRNPQG-KTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKT  306 (572)
Q Consensus       228 ~gV~~~~~~g-~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~  306 (572)
                      +||++.+.+| +.++|+|+||||||||||+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.|..+.+
T Consensus       247 ~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~~-~~~~~~~~  325 (566)
T 3fim_B          247 RCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSN  325 (566)
T ss_dssp             CEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEEC-CEEEESCS
T ss_pred             EEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccce-EEEEeCCC
Confidence            9999996556 889999988999999999999999999999999999999999999999999999999984 88887655


Q ss_pred             CC-C----c-cchHHHHHHHHHcCCCccccCCcccEEEEEeCCC--------------CCCCCeeEEeeccCCCchhhhh
Q psy10663        307 PV-S----S-YTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF--------------KGNPDVAVTQYYFPAQDTLFLR  366 (572)
Q Consensus       307 ~~-~----~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  366 (572)
                      .. .    . ........+|...++||++..+ .+..+|.+...              ...|++++++.+....      
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~------  398 (566)
T 3fim_B          326 QTFDNIFRDSSEFNVDLDQWTNTRTGPLTALI-ANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFH------  398 (566)
T ss_dssp             CSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCS-CSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEESSCCC------
T ss_pred             cccchhhcChHHHHHHHHHHHhcCCCCcccCh-hhheeeeccccchhhhhhhccccccCCCCCEEEEecccchh------
Confidence            31 1    1 1123456789989999998765 46778887642              1257777655432200      


Q ss_pred             hhhccccCchhHHHHHhhcCCCCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhc
Q psy10663        367 GHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMK  446 (572)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~  446 (572)
                               .     ..........+++...+++|.|||+|+|+|+||++.|.|+++|+.++.|++.++++++.++++++
T Consensus       399 ---------~-----~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~  464 (566)
T 3fim_B          399 ---------P-----AIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLS  464 (566)
T ss_dssp             ---------T-----TSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------h-----cccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHh
Confidence                     0     00011123567788889999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCC
Q psy10663        447 YRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVI  526 (572)
Q Consensus       447 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~  526 (572)
                      +++++.+...+..   |++  ....+|++|++|+|+...+.+|++||||||++++.++|||++|||||++||||||+|||
T Consensus       465 ~~~~~~~~~~~~~---P~~--~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~  539 (566)
T 3fim_B          465 GQAWADFVIRPFD---PRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSIL  539 (566)
T ss_dssp             SGGGTTTEEEESS---GGG--SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGC
T ss_pred             CcccCCccccccC---CCc--ccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccC
Confidence            9989887654432   321  34678999999999999999999999999986654499999999999999999999999


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663        527 PVEMVTDSSAVALMLAERCATFIQSP  552 (572)
Q Consensus       527 P~~~~~NP~lTi~AlA~r~ad~I~~~  552 (572)
                      |+++++||++|+||||||+||+|+++
T Consensus       540 P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          540 PFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             CSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999865

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=2.2e-93  Score=770.92  Aligned_cols=518  Identities=21%  Similarity=0.257  Sum_probs=403.9

Q ss_pred             CccccccCCCCCeEEEEcccCCCC---CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP---ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      |+|.||||+++.+|||||||++..   +....|..+.. +.++.++|.|.++||.     ..++.+.++|||+|||||.+
T Consensus        33 vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~-~~~~~~~w~~~t~~q~-----~~~r~~~~~rGk~LGGsS~i  106 (583)
T 3qvp_A           33 TTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGD-IFGSSVDHAYETVELA-----TNNQTALIRSGNGLGGSTLV  106 (583)
T ss_dssp             HHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTT-TTTSTTBCCEECCCCT-----TTSCCCEECCBCSTTGGGGT
T ss_pred             HHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHh-hcCCcccCCccccccC-----CCCCeeeccCceecCCcCcc
Confidence            589999998899999999999432   23445665555 5577899999999886     46788999999999999999


Q ss_pred             ccceeccCChhhHHHHHhcCCC-CCChhhHHHHHHHhhcCCCCCccc-----ccCCCcccccCCCcEEEEcc---CCccC
Q psy10663         78 NDMIHDRGSQYDYERWEGLNMT-GWTYSDMDAIYTRIERTKLDTVRT-----ETESETVTVDNDGTVTITTI---KTEKI  148 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~~g~~-~W~~~~l~pyy~~~e~~~~~~~~~-----~~~~~~~~~g~~Gp~~~~~~---~~~~~  148 (572)
                      |+|+|.|+++.||+.|++.|++ +|+|+++.|||+|+|++..+....     ..+..  .||.+||+.++++   .. ..
T Consensus       107 N~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~--~hG~~Gpl~v~~~~~~~~-~~  183 (583)
T 3qvp_A          107 NGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNAS--CHGVNGTVHAGPRDTGDD-YS  183 (583)
T ss_dssp             SCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGG--GSCSSSSEEEBCCCCSSC-BC
T ss_pred             cceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCcc--ccCCCCCEEecCCCCccc-CC
Confidence            9999999999999999999887 999999999999999997543110     01234  8999999999876   22 46


Q ss_pred             hHHHHHHHHHHHHcCCCCC-CCCCCCCcceeeccccccC-CCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCC--C
Q psy10663        149 NLLRSTFSKAFEDIGFKSP-DTFTVSDHVGIAPPMYYLK-DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET--K  224 (572)
Q Consensus       149 ~~~~~~~~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~-~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~--~  224 (572)
                      + ..+.|.++++++|++.. |+ |++.+.|++.++.++. +|.|+|+..+||.++.+++||+|+++++|+||+++++  +
T Consensus       184 ~-~~~~~~~a~~~~G~~~~~D~-n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~  261 (583)
T 3qvp_A          184 P-IVKALMSAVEDRGVPTKKDF-GCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTT  261 (583)
T ss_dssp             T-HHHHHHHHHHTTTCCBCCCT-TSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEEEEEEECSSSS
T ss_pred             H-HHHHHHHHHHHcCCCcCCCC-CCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCC
Confidence            7 88999999999999987 77 8888999999888775 7999999999999988999999999999999999852  5


Q ss_pred             CEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEee
Q psy10663        225 TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFT  304 (572)
Q Consensus       225 ~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~  304 (572)
                      ++|+||++.+.+|+.++|+|+||||||||+|+||+|||+|||||+++|+++||+++.||| ||+|||||+.+. +.|.++
T Consensus       262 ~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLP-VG~NLqDH~~~~-~~~~~~  339 (583)
T 3qvp_A          262 PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTAT-VRSRIT  339 (583)
T ss_dssp             CEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC-TTCCBBCCEEEE-EEEEEC
T ss_pred             CEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCc-cccchhhCccce-EEEEec
Confidence            799999999668999999999999999999999999999999999999999999999999 999999999984 888876


Q ss_pred             CCCC--------Cccc-----hHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCCCchhhhhhhhcc
Q psy10663        305 KTPV--------SSYT-----INEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKA  371 (572)
Q Consensus       305 ~~~~--------~~~~-----~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (572)
                      ....        ....     ......+|.....+++.... .+...|.+.     ++++..+....  +    ..+...
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~--~----~~~~~~  407 (583)
T 3qvp_A          340 SAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEA-VARGGFHNT-----TALLIQYENYR--D----WIVNHN  407 (583)
T ss_dssp             GGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHHH-HHTTSCSCH-----HHHHHHHHHHH--H----HHHHSC
T ss_pred             CCccccccccccccHHHhhccchHHHHHHHHhhcchhhccc-ccccCcccc-----HHHHhhhccch--h----hhccCC
Confidence            4310        0000     01111222222212111100 000000000     00000000000  0    000000


Q ss_pred             ccCchhHHHHHhhcCCCCCeEEEEEEecccCcceEEEecCCCCCCCCee-eCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q psy10663        372 WNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTI-RYPLYTEEEDIKNILTAVKMVDRVMKYRDF  450 (572)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i-~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~  450 (572)
                      ..+.    +.+. .  ....+.+..+.++|.|||+|+|+|+||++.|.| +++|+.++.|++.++++++.+++|+++.++
T Consensus       408 ~~~~----~~~~-~--~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~  480 (583)
T 3qvp_A          408 VAYS----ELFL-D--TAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAM  480 (583)
T ss_dssp             CEEE----EEEE-E--CTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSTTH
T ss_pred             CCcc----eeee-c--cCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhCcch
Confidence            0000    0000 0  011234445568999999999999999999999 999999999999999999999999999888


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCC
Q psy10663        451 KNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM  530 (572)
Q Consensus       451 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~  530 (572)
                      +.+...+.   .|++......+|++|++|+|....+.+|++||||||++++ ++|||++|||||++||||||+||||+++
T Consensus       481 ~~~~~~~~---~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~~LrVvDaSv~P~~~  556 (583)
T 3qvp_A          481 QTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEM-GGVVDNAARVYGVQGLRVIDGSIPPTQM  556 (583)
T ss_dssp             HHHEEEEE---ESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGG-TCSBCTTCBBTTCBSEEECSTTCCSSCC
T ss_pred             hhcccccc---CCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCC-CceECCCCeEecCCCeEEeecccCCCCC
Confidence            88765443   4555444557899999999999999999999999998654 6999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHhhCCCC
Q psy10663        531 VTDSSAVALMLAERCATFIQSPVN  554 (572)
Q Consensus       531 ~~NP~lTi~AlA~r~ad~I~~~~~  554 (572)
                      ++||++|+||||||+||+|++++.
T Consensus       557 ~~n~~~t~~aiaeraAd~I~~~~~  580 (583)
T 3qvp_A          557 SSHVMTVFYAMALKISDAILEDYA  580 (583)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999998764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=4.2e-92  Score=761.84  Aligned_cols=511  Identities=21%  Similarity=0.335  Sum_probs=421.0

Q ss_pred             CccccccCCCCCeEEEEcccCCC---CCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceee------eecCccc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDA---PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVR------LNQARVL   71 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~---~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~g~~l   71 (572)
                      |+|.||||+++.||||||+|+..   .+...+|..+.. +++++++|.|.++.        .++.+.      ++|||+|
T Consensus        20 v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~-~~~~~~dW~y~t~~--------~~r~~~~~~~~~~~rGkvL   90 (577)
T 3q9t_A           20 TVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMD-LRNSKYDWAYKTTM--------VRRDDYERIEKPNTRGKTL   90 (577)
T ss_dssp             HHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGG-GTTSTTBCCEEEEE--------EEETTEEEEEEEECCBCST
T ss_pred             HHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhh-ccCCCcccceEEEE--------CCccccccccccccccccc
Confidence            57999999866899999999873   234567777766 77888999999873        233334      9999999


Q ss_pred             chhhhhccceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCc--cCh
Q psy10663         72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTE--KIN  149 (572)
Q Consensus        72 GGsS~~n~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~--~~~  149 (572)
                      ||||.+|+|+|.|+.+.||+.|++.|+++|+|+++.|||+|+|++..+......+..  .||.+||+.++.+.+.  ..+
T Consensus        91 GGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~--~hG~~Gpl~v~~~~~~~~~~~  168 (577)
T 3q9t_A           91 GGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELE--KIGGGGPIPISHAELIDEMAP  168 (577)
T ss_dssp             TGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGG--GGCCSCSEEEEECCCCGGGHH
T ss_pred             cCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccc--cCCCCCCEEeeCCCCCcccch
Confidence            999999999999999999999999999999999999999999998754311101123  6899999999887641  235


Q ss_pred             HHHHHHHHHHHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEE
Q psy10663        150 LLRSTFSKAFEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVT  228 (572)
Q Consensus       150 ~~~~~~~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~  228 (572)
                       +.+.|.++++++|++.. |+ |++...|++.++.++..|.|+++. .|+   .+++|++|++++.|+||++++++++|+
T Consensus       169 -~~~~~~~a~~~~G~~~~~d~-n~~~~~G~~~~~~~~~~g~R~s~~-~~l---~~r~Nl~v~~~a~v~ri~~~~~~~~a~  242 (577)
T 3q9t_A          169 -FRENLTKAWKSMGQPLIENI-YDGEMDGLTHCCDTIYRGQRSGSF-LFV---KNKPNITIVPEVHSKRLIINEADRTCK  242 (577)
T ss_dssp             -HHHHHHHHHHHTTCCBCSCC-SSSCCCEEEECEESEETTEECCGG-GGS---SSCTTEEEECSEEEEEEEEETTTTEEE
T ss_pred             -HHHHHHHHHHHcCCCcCCCC-CCCCcCeEEeecceecCCeEeeHH-HHH---hcCCCeEEEcCcEEEEEEEeCCCCEEE
Confidence             77888999999999987 67 888889999999889999999875 564   578999999999999999996568999


Q ss_pred             EEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCC-
Q psy10663        229 GVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP-  307 (572)
Q Consensus       229 gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~-  307 (572)
                      ||++.+.+|+.++|+|+||||||||+|+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.+.++.+. 
T Consensus       243 GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~~-~~~~~~~~~~  321 (577)
T 3q9t_A          243 GVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFG  321 (577)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEEEE-EEEEECTTSS
T ss_pred             EEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCccee-EEEEeCCCCc
Confidence            999996569999999988999999999999999999999999999999999999999999999999984 888887654 


Q ss_pred             -----C-CccchHHHHHHHHHcCCCccccCCcccEEEEEeCC-----------------------CCCCCCeeEEeeccC
Q psy10663        308 -----V-SSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTD-----------------------FKGNPDVAVTQYYFP  358 (572)
Q Consensus       308 -----~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~  358 (572)
                           + +.........+|...++||++.. ..+..+|.+..                       ....|++++++.+..
T Consensus       322 ~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  400 (577)
T 3q9t_A          322 MDDVLLRHGPKRDAVVSAYNKNRSGPVGSG-LLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMF  400 (577)
T ss_dssp             SHHHHTSCSHHHHHHHHHHHHHSCSGGGCC-SEEEEEECCCHHHHTTCHHHHHHHHHTTTSCSSCTTSCCSEEEEEESSC
T ss_pred             cchhhhcchhHHHHHHHHHHhcCCCCcccc-hhheeEEeecChhhhcchhhhhhhhccccccccCCCCCceEEEEecccc
Confidence                 1 11123456778888899999864 34667776532                       112566766654432


Q ss_pred             CCchhhhhhhhccccCchhHHHHHhhcCCCCCeEEEEEEecccCcce-EEEecCCCCCCCCeeeCCCCCCHHHHHHHHHH
Q psy10663        359 AQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEG-VVEINSNDPTKNPTIRYPLYTEEEDIKNILTA  437 (572)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g-~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~  437 (572)
                      ...      +    .+.       ........++++...+++|.||| +|+|+|+||++.|.|+++|+.++.|++.++++
T Consensus       401 ~~~------~----~~~-------~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~~~~  463 (577)
T 3q9t_A          401 GTA------F----QWH-------FPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREG  463 (577)
T ss_dssp             CGG------G----CSS-------SCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHHHHH
T ss_pred             ccc------c----ccc-------ccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCCccHHHHHHHH
Confidence            100      0    000       00011234677888889999999 99999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccC
Q psy10663        438 VKMVDRVM-KYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFS  516 (572)
Q Consensus       438 ~~~~~~i~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~  516 (572)
                      ++.+++++ ++++++.+...+..   |+   ....+|++|++|+|+...+.+|++||||||++++ ++|||++|||||++
T Consensus       464 ~~~~~~i~~~~~~~~~~~~~e~~---p~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~  536 (577)
T 3q9t_A          464 IRFSYDLLFKGEGFKDLVESEYP---WE---MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIK  536 (577)
T ss_dssp             HHHHHHHHHHSTTGGGTEEEEES---SC---CCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTT-TCSBCTTCBBTTCB
T ss_pred             HHHHHHHHHhChhhhhccccccC---CC---CCcCCHHHHHHHHHhccccccccccceecCCCCC-CceECCCCeEeCCC
Confidence            99999999 88888887655432   22   3467899999999999999999999999998655 79999999999999


Q ss_pred             CceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663        517 NLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVN  554 (572)
Q Consensus       517 nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~  554 (572)
                      ||||||+||||+.+++||++|+||||||+||+|+++++
T Consensus       537 ~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~~  574 (577)
T 3q9t_A          537 KLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK  574 (577)
T ss_dssp             SEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred             CcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999998764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1.9e-86  Score=718.84  Aligned_cols=508  Identities=23%  Similarity=0.376  Sum_probs=408.3

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC--CccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI--STAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN   78 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~--~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n   78 (572)
                      ++|.||+|++|.+|||||+|+....  ..+.|..+.. ..++.++|.|.++||+    + .++.+.+++|++|||||.+|
T Consensus        27 ~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~-~~~~~~~w~~~~~p~~----~-~~~~~~~~rGk~lGGsS~in  100 (546)
T 2jbv_A           27 AVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWME-LLESGYDWDYPIEPQE----N-GNSFMRHARAKVMGGCSSHN  100 (546)
T ss_dssp             HHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGG-GTTSTTBCCEEBCCCS----S-SCTTCEECCBCSTTGGGGTS
T ss_pred             HHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHh-hcCCcccccccccccC----C-CCceEEeecccccccCcccc
Confidence            4789999877999999999987632  2445655544 4466789999999887    2 56788999999999999999


Q ss_pred             cceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHH
Q psy10663         79 DMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSK  157 (572)
Q Consensus        79 ~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~  157 (572)
                      +|+|+|+.+.||+.|++ +|+++|+|++|+|||+|+|+++.++..    ..  .||.+||++++.+.+ ..+ ..+.|.+
T Consensus       101 ~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~----~~--~~g~~Gpl~v~~~~~-~~~-~~~~~~~  172 (546)
T 2jbv_A          101 SCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPD----AP--HHGDSGPVHLMNVPP-KDP-TGVALLD  172 (546)
T ss_dssp             CCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTT----BT--TSCBSCSEEEEECCS-CCH-HHHHHHH
T ss_pred             ceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCc----cc--cCCCCCCEEEecCCC-CCH-HHHHHHH
Confidence            99999999999999998 899999999999999999999863320    23  889999999987766 678 8999999


Q ss_pred             HHHHcCCCCCCCCCCCC--cceeeccccccC-CCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc
Q psy10663        158 AFEDIGFKSPDTFTVSD--HVGIAPPMYYLK-DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN  234 (572)
Q Consensus       158 a~~~~G~~~~~~~~~~~--~~g~~~~~~~~~-~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~  234 (572)
                      +++++|++..|+ |+..  +.|++.|+.+|. +|.|+++..+||.++.+++|++|++++.|++|+++++ ++++||++.+
T Consensus       173 a~~~~G~~~~d~-n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~-~~~~GV~~~~  250 (546)
T 2jbv_A          173 ACEQAGIPRAKF-NTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRCTGVDIVD  250 (546)
T ss_dssp             HHHHTTCCBCCS-SSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTT-SBEEEEEEES
T ss_pred             HHHHCCCCccCC-CCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCC-CeEEEEEEEE
Confidence            999999987766 8777  899999999998 9999999999999987789999999999999999842 7999999985


Q ss_pred             C-CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCCCccch
Q psy10663        235 P-QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTI  313 (572)
Q Consensus       235 ~-~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~  313 (572)
                      . +|+.++|+|+|+||||||+|+||+||++|||||+++|+++||+++.|||+||+|||||+... +.+.++.+. ...  
T Consensus       251 ~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~-~~~~~~~~~-~~~--  326 (546)
T 2jbv_A          251 SAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFEAKQPM-VAE--  326 (546)
T ss_dssp             STTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECC-EEEEESSCC-CSC--
T ss_pred             CCCCcEEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccce-EEEEecCCC-ccc--
Confidence            3 28888999987999999999999999999999999999999999999999999999999995 888876542 110  


Q ss_pred             HHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCCeE
Q psy10663        314 NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPIL  392 (572)
Q Consensus       314 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (572)
                                 .    . ...+...|.+.... ..|++++++.+......     +.   .++.        . .....+
T Consensus       327 -----------~----~-~~~~~~~f~~~~~~~~~p~~~~~~~~~~~~~~-----~~---~~g~--------~-~~~~~~  373 (546)
T 2jbv_A          327 -----------S----T-QWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMN-----TL---RHGY--------P-TTENGF  373 (546)
T ss_dssp             -----------C----S-SSCCEEEEECSSTTCSSCSEEEEEESSCCCTT-----TG---GGTC--------C-CCSSEE
T ss_pred             -----------c----c-chhheEEEEecCCCCCCCceEEEecccccccc-----cc---ccCc--------c-CCCCeE
Confidence                       0    0 11245677765432 36788776654321000     00   0000        0 112456


Q ss_pred             EEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHH--HHHHHHHHHHHHHHHhcCccccccccccccccccccccCCC
Q psy10663        393 IIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEE--DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY  470 (572)
Q Consensus       393 ~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~--D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~  470 (572)
                      ++...+++|.|+|+|+|+++||++.|.|+++|+.++.  |++.++++++.+++++++.+++.+...+.   .|+   ...
T Consensus       374 ~~~~~~~~P~srG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~  447 (546)
T 2jbv_A          374 SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPG---VEA  447 (546)
T ss_dssp             EEEEEETTCCCCBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEE---ESC---TTC
T ss_pred             EEEEEEcccCcccEEEecCCCCCCCceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhcccccc---cCC---CCC
Confidence            6777789999999999999999999999999999999  99999999999999999988887654332   232   346


Q ss_pred             CCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663        471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ  550 (572)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~  550 (572)
                      .++++|++|+|....+.+|++||||||+..|+++|||++|||||++||||||+||||+++++||++||||||||+||+|+
T Consensus       448 ~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~  527 (546)
T 2jbv_A          448 QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR  527 (546)
T ss_dssp             CSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            78999999999988899999999999964456799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccceeeeeeec
Q psy10663        551 SPVNVTTVTKTTVEKTSV  568 (572)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~  568 (572)
                      +++..... ..+.|+++.
T Consensus       528 ~~~~~~~~-~~~~~~~~~  544 (546)
T 2jbv_A          528 SARAGETT-TADAELSAA  544 (546)
T ss_dssp             ------------------
T ss_pred             hhcccCCC-CCcHHHHhh
Confidence            98865444 444454433

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=7.4e-89  Score=742.57  Aligned_cols=516  Identities=18%  Similarity=0.228  Sum_probs=402.7

Q ss_pred             CccccccCCCCCeEEEEcccCCCC--CCcc-ccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP--ISTA-IPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~--~~~~-~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      ++|.||+|++|++|||||+|+...  +... +|..+.. ++.+.++|.|.++|      ++.++.+.+++||+|||||+|
T Consensus        38 ~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~-~~~~~~~w~~~t~p------~~~~~~~~~~rGk~lGGsS~i  110 (587)
T 1gpe_A           38 TVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQ-IFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLI  110 (587)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTT-TTTSTTBCCEECCC------CTTSCCCEECCBCSTTGGGGT
T ss_pred             HHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhh-ccCCcccccccccc------CCCCceeeeeccccccccccc
Confidence            479999985699999999998763  2234 6766655 55667899999887      256788999999999999999


Q ss_pred             ccceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCcc-----cccCCCcccccCCCcEEEEcc---CCccC
Q psy10663         78 NDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVR-----TETESETVTVDNDGTVTITTI---KTEKI  148 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~-----~~~~~~~~~~g~~Gp~~~~~~---~~~~~  148 (572)
                      |+|+|+|+++.||+.|++. |+++|+|++|+|||+|+|+++.+...     ...+..  .||.+||++++++   .. .+
T Consensus       111 n~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~--~~g~~Gpl~v~~~~~~~~-~~  187 (587)
T 1gpe_A          111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNAT--CHGTNGTVQSGARDNGQP-WS  187 (587)
T ss_dssp             SCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGG--GCCBSSSEEEBCCCCSSC-BC
T ss_pred             cceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCcc--ccCCCCCEEEccCCCcCC-CC
Confidence            9999999999999999997 99999999999999999999865210     001134  8999999999865   23 67


Q ss_pred             hHHHHHHHHHHHHcCCCCC-CCCCCCCcceeecccccc-CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCC--
Q psy10663        149 NLLRSTFSKAFEDIGFKSP-DTFTVSDHVGIAPPMYYL-KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--  224 (572)
Q Consensus       149 ~~~~~~~~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~--  224 (572)
                      + ..+.|.++++++|++.. |+ |++.+.|++.|+.++ .+|.|+|+..+||.++.+++|++|++++.|++|++++++  
T Consensus       188 ~-~~~~~~~a~~~~G~~~~~d~-n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~  265 (587)
T 1gpe_A          188 P-IMKALMNTVSALGVPVQQDF-LCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASG  265 (587)
T ss_dssp             T-HHHHHHHHHHHTTCCBSCCT-TSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTE
T ss_pred             H-HHHHHHHHHHHcCCCcCCCC-CCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEEEECCCCCC
Confidence            8 89999999999999987 66 888888999998765 479999999999988788899999999999999998532  


Q ss_pred             CEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEee
Q psy10663        225 TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFT  304 (572)
Q Consensus       225 ~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~  304 (572)
                      ++|+||++.+.+|+.++|+|+|+||||||+|+||+|||+|||||+++|+++||+++.||| ||+|||||+... +.+.++
T Consensus       266 ~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlP-VG~nL~DH~~~~-~~~~~~  343 (587)
T 1gpe_A          266 PQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTTTT-VSSRAS  343 (587)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECC-TTCSBBCCEEEE-EEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCC-CCcchhcCcccc-eEEEeC
Confidence            599999998768889999997799999999999999999999999999999999999999 999999999984 888876


Q ss_pred             CCCC--Ccc-chHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCCCchhhhhhhhccccCchhH---
Q psy10663        305 KTPV--SSY-TINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDL---  378 (572)
Q Consensus       305 ~~~~--~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  378 (572)
                      ++..  ... .......+|.....|+++... .+...|.+.... ...       ...     ..      .+...+   
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~-~~~-------~~~-----~~------~~~~~~~~~  403 (587)
T 1gpe_A          344 SAGAGQGQAVFFANFTETFGDYAPQARDLLN-TKLDQWAEETVA-RGG-------FHN-----VT------ALKVQYENY  403 (587)
T ss_dssp             GGGCSBCEEEEEEEHHHHHGGGHHHHHHHHH-HSHHHHHHHHHH-TTS-------CSC-----HH------HHHHHHHHH
T ss_pred             CCcccccchHHHHHHHHHHHhCCCCCccccc-cceeeEeecccc-ccc-------ccc-----cc------cccccHHHH
Confidence            5421  110 001122334333334433210 001111110000 000       000     00      000000   


Q ss_pred             HHHHhhc--------CCCCCeEEEEEEecccCcceEEEecCCCCCCCC-eeeCCCCCCHHHHHHHHHHHHHHHHHhcCcc
Q psy10663        379 VERFVKV--------NADKPILIIGLVSLCPKAEGVVEINSNDPTKNP-TIRYPLYTEEEDIKNILTAVKMVDRVMKYRD  449 (572)
Q Consensus       379 ~~~~~~~--------~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P-~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~  449 (572)
                      ...+...        ......+++...+++|.|+|+|+|+++||++.| +|+++|+.++.|++.++++++.+++++++.+
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~  483 (587)
T 1gpe_A          404 RNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGA  483 (587)
T ss_dssp             HHHHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             hhhccCCCCcceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcc
Confidence            0000000        001134667778899999999999999999999 9999999999999999999999999999988


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCC
Q psy10663        450 FKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE  529 (572)
Q Consensus       450 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~  529 (572)
                      ++.+...+.   .|+.......++++|++|+|....+.+|++||||||++++ +||||++|||||++||||||+||||++
T Consensus       484 ~~~~~~~~~---~pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~-~sVVD~~lrV~Gv~nLrVvDaSv~P~~  559 (587)
T 1gpe_A          484 MKEYFAGET---LPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSREL-GGVVDATAKVYGTQGLRVIDGSIPPTQ  559 (587)
T ss_dssp             HHHHEEEEE---ESGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGG-TCSBCTTCBBTTCBSEEECSTTCCSSC
T ss_pred             hhhhccccc---CCCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCC-CceECCCCEEECCCCcEEeeeccCCCC
Confidence            887754432   2332222347899999999998889999999999997653 699999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663        530 MVTDSSAVALMLAERCATFIQSPVN  554 (572)
Q Consensus       530 ~~~NP~lTi~AlA~r~ad~I~~~~~  554 (572)
                      +++||++|+||||||+||+|++++.
T Consensus       560 ~~~Np~~ti~aiAeraAd~I~~~~~  584 (587)
T 1gpe_A          560 VSSHVMTIFYGMALKVADAILDDYA  584 (587)
T ss_dssp             CSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999998753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=8.9e-85  Score=707.56  Aligned_cols=484  Identities=22%  Similarity=0.351  Sum_probs=397.3

Q ss_pred             CccccccCCCCCeEEEEcccCCCC-CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhcc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP-ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIND   79 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~-~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~   79 (572)
                      |+|.||||++++||||||||++.. +....|..+.. +++++++|.|.++||..    +.++.+.++|||+|||||+||+
T Consensus        31 v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~-~~~~~~dw~~~t~p~~~----~~~~~~~~~rG~~lGGsS~in~  105 (526)
T 3t37_A           31 LLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPA-LQGRSYDWDYRTEAQAG----TAGRAHHWARGRLIGGSSCLHA  105 (526)
T ss_dssp             HHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGG-TTTSTTBCCEECCCBGG----GTTBCCEECCBCBTTGGGGTSC
T ss_pred             HHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhh-ccCCccccCccccccCC----CCCCeEeccCccEECcHHHHhh
Confidence            589999998899999999998753 34456777766 77889999999999984    6788999999999999999999


Q ss_pred             ceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHH
Q psy10663         80 MIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKA  158 (572)
Q Consensus        80 ~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a  158 (572)
                      |+|+|+++.||+.|.+ .++.+|+|++++|||+++|++....      ..  .|+.+||+++..+.....| +.+.|.++
T Consensus       106 ~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~------~~--~~~~~g~~~~~~~~~~~~p-~~~~~~~~  176 (526)
T 3t37_A          106 MGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGG------DG--IHGKGGPLPIHLPADEVSP-LARAFIEA  176 (526)
T ss_dssp             CBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTT------SS--SSCSSCSEECBCCSTTSCH-HHHHHHHH
T ss_pred             CEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCC------cc--ccCcCCCcCcccccccCCH-HHHHHHHH
Confidence            9999999999999987 5889999999999999999987543      23  7788899888765543678 89999999


Q ss_pred             HHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhh-hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCC
Q psy10663        159 FEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRA-IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ  236 (572)
Q Consensus       159 ~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~-~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~  236 (572)
                      ++++|++.. +. +.+.+.++..|+.+|..|.|.++..+|+.+ +..++|++|++++.|++|+++  +++|+||++. ..
T Consensus       177 ~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~--~~~a~gv~~~-~~  252 (526)
T 3t37_A          177 GASLGLPRLEGH-NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVV-GR  252 (526)
T ss_dssp             HHHTTCCBCSSS-CSSCCBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEE--TTEEEEEEEE-ET
T ss_pred             HHHcCCCcccCC-CCCcccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEec--CCeEEEEEEE-ec
Confidence            999999887 45 777888888999999999999999898865 457899999999999999999  6899999998 45


Q ss_pred             CceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCCCccchHHH
Q psy10663        237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEI  316 (572)
Q Consensus       237 g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~  316 (572)
                      +...++.|+ +||||||||+||+|||+|||||+.+|.++||+++.|||+||+|||||+......+..+.+.         
T Consensus       253 ~~~~~~~a~-~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~---------  322 (526)
T 3t37_A          253 QGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV---------  322 (526)
T ss_dssp             TEEEEEEEE-EEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCC---------
T ss_pred             CceEEEeec-ceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCCc---------
Confidence            667788895 9999999999999999999999999999999999999999999999997642233333322         


Q ss_pred             HHHHHHcCCCccccCCcccEEEEEeCCCC---CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCCeEE
Q psy10663        317 IYEYLTQRTGRFTDIGMSNFIGYLDTDFK---GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILI  393 (572)
Q Consensus       317 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (572)
                                +...........|.+....   ..|++.+.....+....          .         +........+.
T Consensus       323 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~~  373 (526)
T 3t37_A          323 ----------PPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSE----------S---------FPAPAAGSAYS  373 (526)
T ss_dssp             ----------CCCSSCSEEEEEEECSSCSSCCSSCCEEEEEESSCCCCT----------T---------SCCCCTTSEEE
T ss_pred             ----------chHhhcchhhhhhhhcccccccCCcceeeeccccccccc----------c---------cccccCCccee
Confidence                      1111111233445443321   14555443332220000          0         01111234567


Q ss_pred             EEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCCCCCH
Q psy10663        394 IGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSE  473 (572)
Q Consensus       394 ~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  473 (572)
                      +...+++|.|+|+|++.+.||.+.|.|+++|+.++.|++.++++++.+++++.+..++.+...++   .|++    ..++
T Consensus       374 ~~~~l~~p~srG~v~~~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~---~pg~----~~~~  446 (526)
T 3t37_A          374 LLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL---LPGT----PNSA  446 (526)
T ss_dssp             EEEEESSCCCCBEEECSSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEEC---SSCC----CCSH
T ss_pred             eeccccCccccCcceeccCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCCC----CCCH
Confidence            77778999999999999999999999999999999999999999999999999988887665543   2332    3678


Q ss_pred             HHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663        474 EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ  550 (572)
Q Consensus       474 ~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~  550 (572)
                      +++++|++....+.+|++||||||.+  ++||||++|||||++|||||||||||+++++||++||||||||+||+-.
T Consensus       447 ~~~~~~ir~~~~t~~H~~GTcrMG~d--~~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~~  521 (526)
T 3t37_A          447 AEMDDFIARSVITHHHPCGTCRMGKD--PDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYH  521 (526)
T ss_dssp             HHHHHHHHHHEEECSCCBCTTCBCSS--TTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCcccCccccCCCC--CCccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999964  4799999999999999999999999999999999999999999999853

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=7.4e-72  Score=603.26  Aligned_cols=462  Identities=21%  Similarity=0.302  Sum_probs=335.4

Q ss_pred             CccccccCCCCCeEEEEcccCCCC--CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAP--ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN   78 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n   78 (572)
                      |+|.||||  |.+|||||+|+...  +....|..+...+..  .+| |.+.+|..    ..++.+.+++|++|||||+||
T Consensus        40 v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~--~~~-~~t~~q~~----~~~~~~~~~rg~~lGGsS~in  110 (536)
T 1ju2_A           40 PLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQ--EDD-GKTPVERF----VSEDGIDNVRGRVLGGTSIIN  110 (536)
T ss_dssp             HHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHS--CCC-SSSSEEEE----ECTTSCEEEEECBTTGGGGTS
T ss_pred             HHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhccC--CCc-CcCCCccc----cCCCcceeecceecccccccc
Confidence            57999997  89999999998752  222333333221222  234 55666653    345668899999999999999


Q ss_pred             cceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHH
Q psy10663         79 DMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKA  158 (572)
Q Consensus        79 ~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a  158 (572)
                      +|+|+|+++.||+.+   | .+|+|++++|||+++|+.+...                       +. ..+ +.+.|.++
T Consensus       111 ~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~~-----------------------~~-~~~-~~~~~~~a  161 (536)
T 1ju2_A          111 AGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVYK-----------------------PN-SQS-WQSVTKTA  161 (536)
T ss_dssp             CCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCBC-----------------------CC-CCH-HHHHHHHH
T ss_pred             CeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCCC-----------------------CC-CCc-HHHHHHHH
Confidence            999999999999742   2 2599999999999999864210                       11 346 78889999


Q ss_pred             HHHcCCCCC-CCCCCCCccee--eccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCC-CCEEEEEEEEc
Q psy10663        159 FEDIGFKSP-DTFTVSDHVGI--APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET-KTKVTGVEFRN  234 (572)
Q Consensus       159 ~~~~G~~~~-~~~~~~~~~g~--~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~-~~~a~gV~~~~  234 (572)
                      ++++|++.. .. +.....|+  +.+ .++.+|.|+++.. |++. ++++|++|+++++|++|+++++ +++++||++.+
T Consensus       162 ~~~~G~~~~~~~-~~~~~~g~~~g~~-~~~~~g~r~s~~~-~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~  237 (536)
T 1ju2_A          162 FLEAGVHPNHGF-SLDHEEGTRITGS-TFDNKGTRHAADE-LLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD  237 (536)
T ss_dssp             HHHTTCCCEEEE-CCBCCSEEEECEE-SBCTTSBBCCGGG-GGGG-SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC
T ss_pred             HHHcCCCCCCCc-ccCCCCCceeeeE-EECCCCeEecHHH-hhhh-hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEe
Confidence            999998642 11 11111221  111 1236899999875 8766 5789999999999999999852 25999999996


Q ss_pred             CCCceeEee--ccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCCCccc
Q psy10663        235 PQGKTIKVN--ANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYT  312 (572)
Q Consensus       235 ~~g~~~~v~--A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~~  312 (572)
                      .+|+.++++  ++|+||||||+|+||+||++|||||+++|+++||+++.|||+||+|||||+... +.+.++.+..    
T Consensus       238 ~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~-~~~~~~~~~~----  312 (536)
T 1ju2_A          238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INILPPNPIE----  312 (536)
T ss_dssp             TTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEE-EEECCSSCCC----
T ss_pred             CCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCccee-EEEEeCCCcc----
Confidence            678877774  657999999999999999999999999999999999999999999999999874 7766654320    


Q ss_pred             hHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCCeE
Q psy10663        313 INEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPIL  392 (572)
Q Consensus       313 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (572)
                                  .+.....+...  .|.....      ..  ..... ..  ...      +....     .........
T Consensus       313 ------------~~~~~~~~~~~--~~~~~~~------g~--~~~~~-~~--~~~------~~~~~-----~~~~~~~~~  356 (536)
T 1ju2_A          313 ------------PTIVTVLGISN--DFYQCSF------SS--LPFTT-PP--FGF------FPSSS-----YPLPNSTFA  356 (536)
T ss_dssp             ------------CCCCCEEEECS--SEEEEEE------EE--CCCSS-CC--BTT------BSSSC-----CCCCSSCEE
T ss_pred             ------------cccchhhhHHH--HHHHcCC------CC--CCCCh-hh--hee------ecCcc-----cCCCCcceE
Confidence                        01000000000  0110000      00  00000 00  000      00000     011112223


Q ss_pred             EEEEEecccCcceEEEe-cCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc----
Q psy10663        393 IIGLVSLCPKAEGVVEI-NSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAK----  467 (572)
Q Consensus       393 ~~~~~~~~p~s~g~v~l-~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~----  467 (572)
                      .+...+++|.|||+|+| .++||++.|.|+++|+.++.|++.++++++.+++++++.+++.+...+. .+.|++..    
T Consensus       357 ~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~p~~~~~~~~  435 (536)
T 1ju2_A          357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDL-PGVEGFNILGIP  435 (536)
T ss_dssp             EEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCC-STTCSCCBSSSC
T ss_pred             EEeeecCCCCcceEEEeCCCCCcccCceecccccCCccHHHHHHHHHHHHHHHHcCccchhhhcccc-ccCCCccccccC
Confidence            34455678999999999 8899999999999999999999999999999999999998888764432 11122110    


Q ss_pred             --CCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHH
Q psy10663        468 --CKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC  545 (572)
Q Consensus       468 --~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~  545 (572)
                        ....++++|++|+|....+.+|++||||||      +|||++|||||++||||||+||||+++++||++|+||||||+
T Consensus       436 ~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG------~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~  509 (536)
T 1ju2_A          436 LPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYV  509 (536)
T ss_dssp             CCSCTTCHHHHHHHHHHHCEECSCCEESSCBT------TTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHhccCccccCcCccCCc------cEECCCCeEcCCCCeEEeecccCCCCCCcchHHHHHHHHHHH
Confidence              024579999999999999999999999999      799999999999999999999999999999999999999998


Q ss_pred             HHHhhCC
Q psy10663        546 ATFIQSP  552 (572)
Q Consensus       546 ad~I~~~  552 (572)
                      |+.|+++
T Consensus       510 A~~ii~~  516 (536)
T 1ju2_A          510 GIKILQE  516 (536)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=3.1e-68  Score=578.89  Aligned_cols=478  Identities=18%  Similarity=0.218  Sum_probs=347.6

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC--C---------------ccccccchhhhcCCCccceeeeecCCCcCCCCCCcee
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI--S---------------TAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVV   63 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~--~---------------~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~   63 (572)
                      ++|.||+|+ |++|||||+|+....  .               .++|..+..       .|.. ..++.      ....+
T Consensus        21 ~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~-~~~~~------~~~~~   85 (546)
T 1kdg_A           21 IAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFES-------LFTD-SNPFW------WCKDI   85 (546)
T ss_dssp             HHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGG-------GGTC-SCCTT------BCTTB
T ss_pred             HHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHH-------hhcC-CCccc------ccccc
Confidence            479999986 999999999986421  0               011111111       0110 00010      01124


Q ss_pred             eeecCcccchhhhhccceeccCChhhHHH---HHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEE
Q psy10663         64 RLNQARVLGGSSIINDMIHDRGSQYDYER---WEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTI  140 (572)
Q Consensus        64 ~~~~g~~lGGsS~~n~~~~~r~~~~df~~---w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~  140 (572)
                      .+.+|++|||||.+|+|+++|+.+.||+.   |+    .+|+|++  |||+|+|+.....       .  .+..+|+.  
T Consensus        86 ~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~----~~w~~~~--p~~~k~e~~~~~~-------~--~~~~~g~~--  148 (546)
T 1kdg_A           86 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP----SSWTNHA--PYTSKLSSRLPST-------D--HPSTDGQR--  148 (546)
T ss_dssp             SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC----GGGSCCH--HHHHHHHHHSCCB-------S--CCSTTSCC--
T ss_pred             ccccceeecccccccceEEecCChHHhcCcccCc----cccCccc--HHHHHHHhcCCCC-------c--cCCCCCCc--
Confidence            67899999999999999999999999987   84    6799988  9999999866321       1  23334432  


Q ss_pred             EccCCccChHHHHHHHHHHHHcCCCCCCCCCC--CCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEE
Q psy10663        141 TTIKTEKINLLRSTFSKAFEDIGFKSPDTFTV--SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKL  218 (572)
Q Consensus       141 ~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~--~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i  218 (572)
                          + ..+ ..+.|.++++++|++..+..+.  ..+.|++.++++|.+|.|+++..+||.++.+++|++|++++.|++|
T Consensus       149 ----~-~~~-~~~~~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i  222 (546)
T 1kdg_A          149 ----Y-LEQ-SFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNV  222 (546)
T ss_dssp             ----C-SCH-HHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEE
T ss_pred             ----c-CCH-HHHHHHHHHHHCCCCcCCccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEE
Confidence                3 456 7788999999999876543111  2456888888889999999999899999888899999999999999


Q ss_pred             EEeCCCCEEEEEEEEcC-CCce--eEeeccceeEeccCcchhhHHHHHcCCCChHHHhhc------CCCce-----ecCc
Q psy10663        219 CFDETKTKVTGVEFRNP-QGKT--IKVNANREVVLAANSINSVRILQQSGVGDAALLSKY------NIPLV-----KNLP  284 (572)
Q Consensus       219 ~~~~~~~~a~gV~~~~~-~g~~--~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~------Gi~~~-----~~lp  284 (572)
                      +++  +++++||++.+. +|+.  +++.+.|+||||||+++||+||++|||||+++|+++      ||+++     .|||
T Consensus       223 ~~~--~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp  300 (546)
T 1kdg_A          223 VRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP  300 (546)
T ss_dssp             EEE--TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC
T ss_pred             EEe--CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCC
Confidence            998  579999999853 4653  456555799999999999999999999999999999      58874     7999


Q ss_pred             ccCccccCCcccccEEEEeeCC-C-CC-----ccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CC--CCeeEEe
Q psy10663        285 GVGKRLSLHPMFFGLSYTFTKT-P-VS-----SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GN--PDVAVTQ  354 (572)
Q Consensus       285 ~VG~nl~dH~~~~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~  354 (572)
                       ||+|||||+.+. +.+..+.. . .+     .........+|.....||++.... . ..|+..... ..  +.++..+
T Consensus       301 -VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  376 (546)
T 1kdg_A          301 -VGMNAQDNPSIN-LVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASP-K-LNFWRAYSGSDGFTRYAQGTV  376 (546)
T ss_dssp             -TTTTBBCCCCEE-EEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCSC-C-EEEEEEEECTTSCEEEEEEEE
T ss_pred             -cccCcccCccee-EEEecCCcccccchhhhhcchhHHHHHHHHHcCCcccccCCc-c-eEEEEccCCCCcchhhhhhee
Confidence             999999999984 77763221 1 00     001123456777778888875322 2 234432111 01  1222222


Q ss_pred             eccCCCchhhhhhhhccccCchhHHHHHhhcCCCCCeEEEEEEeccc-CcceEEEecCCCCCCCCeeeCCCCCCHHHHHH
Q psy10663        355 YYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCP-KAEGVVEINSNDPTKNPTIRYPLYTEEEDIKN  433 (572)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~  433 (572)
                      .+....       +   .++         .+......+++....++| .|+|+|+|++.|  ..|.|+++|+.++.|++.
T Consensus       377 ~~~~~~-------~---~~~---------~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~  435 (546)
T 1kdg_A          377 RPGAAS-------V---NSS---------LPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTV  435 (546)
T ss_dssp             EESCSC-------C---CCS---------SCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHH
T ss_pred             cccccc-------c---ccc---------cccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHH
Confidence            211000       0   000         001112356676777888 999999999887  567789999999999999


Q ss_pred             HHHHHHHHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCcee
Q psy10663        434 ILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVN  513 (572)
Q Consensus       434 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~  513 (572)
                      ++++++.+++++++.+...+       ..|++    ..+++++.++++....+++|++||||||+++ +++|||++||||
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~-------~~p~~----~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~-~~~VVD~~lrV~  503 (546)
T 1kdg_A          436 LLQALHDVVSNIGSIPGLTM-------ITPDV----TQTLEEYVDAYDPATMNSNHWVSSTTIGSSP-QSAVVDSNVKVF  503 (546)
T ss_dssp             HHHHHHHHTTTGGGSTTCEE-------EESCT----TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCT-TTCSBCTTCBBT
T ss_pred             HHHHHHHHHHHhcCCCcccc-------cCCCC----CCCHHHHHHHHHHhcCcccccccceecCCCC-CCeeECCCCeEc
Confidence            99999999999876532211       12321    2568888889888888999999999999753 479999999999


Q ss_pred             ccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q psy10663        514 GFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNV  555 (572)
Q Consensus       514 g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~~  555 (572)
                      |++||||||+||||+++++||++|+||||||+||+|++++..
T Consensus       504 Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~  545 (546)
T 1kdg_A          504 GTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGG  545 (546)
T ss_dssp             TCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             cCCCcEEeEecccCCCCCccHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999988753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=2.9e-67  Score=564.50  Aligned_cols=441  Identities=16%  Similarity=0.154  Sum_probs=320.4

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC-C--ccccccchhhhcCCCccceeeeecCC--------------CcCCCC----C
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI-S--TAIPAMWHESIQDSKLDWGFVLESNP--------------SYGLGL----K   59 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~-~--~~~p~~~~~~~~~~~~~w~~~~~~~~--------------~~~~~~----~   59 (572)
                      ++|.+|++. |++|+|||+|+.... .  ...+... . .....++|.|.++|+.              ..+.+.    .
T Consensus        19 ~~a~~l~~~-~~~v~~~e~~~~~~~~~~~~~~~~~~-~-~~~~~~~w~~~t~p~~~~~~l~~~~~~~~~~~~~g~~~~~~   95 (504)
T 1n4w_A           19 VSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGM-L-NPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVN   95 (504)
T ss_dssp             HHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCT-T-SCCGGGSBSCSBCCCCTTCHHHHGGGCCBCCCCBCSEEEEE
T ss_pred             HHHHHHHhC-CCcEEEEeCCCCCCCCCCcccccccc-c-ccCccccccccccccccccccccccccccccccccccceec
Confidence            368999984 999999999986431 1  1222211 1 2234578999887761              011111    5


Q ss_pred             CceeeeecCcccchhhhhccceeccCChhhHHHHHhcCCCCCChhhHH-HHHHHhhcCCCCCcccccCCCcccccCCCcE
Q psy10663         60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMD-AIYTRIERTKLDTVRTETESETVTVDNDGTV  138 (572)
Q Consensus        60 ~~~~~~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W~~~~l~-pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~  138 (572)
                      ++.+.+++|++|||||+||+|+|+|+++.||+.|.    ++|.|++|+ |||+|+|+++.+....   ..  .| ..+| 
T Consensus        96 ~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~---~~--~~-~~~~-  164 (504)
T 1n4w_A           96 YDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHID---TK--WF-EDTE-  164 (504)
T ss_dssp             CSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCC---HH--HH-HHCG-
T ss_pred             CCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCCC---cc--cc-cCCC-
Confidence            66789999999999999999999999999999996    689999999 9999999987543210   00  11 0011 


Q ss_pred             EEEccCCccChHHHHHHHHHHHHcCC-----CCC-CCCCC---------CCcceeeccccccCCCeecchhHHhHhhhcC
Q psy10663        139 TITTIKTEKINLLRSTFSKAFEDIGF-----KSP-DTFTV---------SDHVGIAPPMYYLKDGQRMIASSIFLRAIKD  203 (572)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~a~~~~G~-----~~~-~~~~~---------~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~  203 (572)
                              ..+ ..+.|.++++++|+     +.. |+ |.         ..+..++.|..+|++| |+++..+||.++.+
T Consensus       165 --------~~p-~~~~~~~a~~~~G~~~~~~p~~~d~-n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~  233 (504)
T 1n4w_A          165 --------WYK-FARVSREQAGKAGLGTVFVPNVYDF-GYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALG  233 (504)
T ss_dssp             --------GGH-HHHHHHHHHHHTTCCEEECCBSBCH-HHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHH
T ss_pred             --------cch-HHHHHHHHHHHcCCCCccCCccccc-CccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHh
Confidence                    146 78899999999999     433 33 21         2345667788889999 99999999999888


Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC---ceeEeeccceeEeccCcchhhHHHHHcC-CCChHHHhhcCCCc
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG---KTIKVNANREVVLAANSINSVRILQQSG-VGDAALLSKYNIPL  279 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g---~~~~v~A~k~VILaAGai~Tp~LLl~Sg-IG~~~~l~~~Gi~~  279 (572)
                      ++|++|++++.|++|++++++++++||++.+.+|   +.++|+|+ +||||||+|+||+|||+|| ||        ||++
T Consensus       234 ~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~lL~~Sg~ig--------~i~~  304 (504)
T 1n4w_A          234 TGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRARDTG--------TLPN  304 (504)
T ss_dssp             TTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTT--------SSTT
T ss_pred             cCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHHHHHhccccC--------CCCC
Confidence            8899999999999999986446999999986567   57889996 9999999999999999999 98        7888


Q ss_pred             eecCcccCccccCCcccccEEEEeeCCCCCccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCC
Q psy10663        280 VKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPA  359 (572)
Q Consensus       280 ~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (572)
                      +.+  +||+||+||+... +.+.... .               ...|++..  ......|.+......|++++.+ ..+ 
T Consensus       305 ~~~--~VG~nl~dh~~~~-~~~~~~~-~---------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~-  361 (504)
T 1n4w_A          305 LNS--EVGAGWGPNGNIM-TARANHM-W---------------NPTGAHQS--SIPALGIDAWDNSDSSVFAEIA-PMP-  361 (504)
T ss_dssp             CCT--TTTCCBBCTTCEE-EEEECCT-T---------------CCCCSCCC--SSCCEEEEECCSSTTCEEEEEE-CCC-
T ss_pred             CCh--hhccccccCCcce-eeeccCC-C---------------CcccCcCC--CccEEEEeccCCCCCceEEEec-cCC-
Confidence            765  5999999999873 4433221 1               01233321  1123345444322234332221 000 


Q ss_pred             CchhhhhhhhccccCchhHHHHHhhcCCCCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHH
Q psy10663        360 QDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVK  439 (572)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~  439 (572)
                                      ..        +.  ..+.+...+.+|.++|+|+|+++||    .|+++|+.++ | +.+.++++
T Consensus       362 ----------------~~--------~~--~~~~~~~~~~~p~srG~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~  409 (504)
T 1n4w_A          362 ----------------AG--------LE--TWVSLYLAITKNPQRGTFVYDAATD----RAKLNWTRDQ-N-APAVNAAK  409 (504)
T ss_dssp             ----------------CS--------SC--CCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHH
T ss_pred             ----------------hH--------HH--hhhhhheeeeccCCCcEEEecCCCC----ceEeccCCCc-C-HHHHHHHH
Confidence                            00        00  2355566678899999999998765    6899999999 8 77888888


Q ss_pred             -HHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCc
Q psy10663        440 -MVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNL  518 (572)
Q Consensus       440 -~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL  518 (572)
                       .+++++++.+.  +         ++.+.  +.. + ++++   ...+++|++||||||      +|||++|||||++||
T Consensus       410 ~~~~~i~~~~~~--~---------~~~~~--~~~-~-~~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL  465 (504)
T 1n4w_A          410 ALFDRINKANGT--I---------YRYDL--FGT-Q-LKAF---ADDFCYHPLGGCVLG------KATDDYGRVAGYKNL  465 (504)
T ss_dssp             HHHHHHHHHHTC--C---------BCCSS--SSS-S-CCSE---ECSEESSCBCSSCTT------TTBCTTSBBTTCSSE
T ss_pred             HHHHHHHhccCC--C---------cCCch--hhh-h-hhhh---ccCccccccCCceee------eEECCCCeEeccCCe
Confidence             88888876442  1         11000  000 0 0001   345789999999999      899999999999999


Q ss_pred             eEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663        519 RVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVN  554 (572)
Q Consensus       519 ~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~  554 (572)
                      ||||+||||+++++||++||||||||+||+|++++.
T Consensus       466 rVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~  501 (504)
T 1n4w_A          466 YVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDV  501 (504)
T ss_dssp             EECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999997754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=6.7e-66  Score=553.88  Aligned_cols=440  Identities=16%  Similarity=0.147  Sum_probs=313.6

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCccccc--cchhhh-cCCCccceeeeecCCCc-----------CCCC------CC
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPA--MWHESI-QDSKLDWGFVLESNPSY-----------GLGL------KD   60 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~--~~~~~~-~~~~~~w~~~~~~~~~~-----------~~~~------~~   60 (572)
                      ++|.||++ +|++|+|||+|+....  ..|.  .+.... ....++|.|.++||...           ....      .+
T Consensus        25 ~~a~~l~~-~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~~~~~~~~~g~~~~~~~  101 (507)
T 1coy_A           25 VAALRLTQ-AGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERF  101 (507)
T ss_dssp             HHHHHHHH-TTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCBCCCCBCSEEEEEC
T ss_pred             HHHHHHHH-CCCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccccccccccccceeeEecC
Confidence            37899998 4999999999986532  1221  111102 23468999998886110           0112      56


Q ss_pred             ceeeeecCcccchhhhhccceeccCChhhHHHHHhcCCCCCChhhHH-HHHHHhhcCCCCCcccccCCCcccccCCCcEE
Q psy10663         61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMD-AIYTRIERTKLDTVRTETESETVTVDNDGTVT  139 (572)
Q Consensus        61 ~~~~~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W~~~~l~-pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~  139 (572)
                      +.+.+++|++|||||+||+|+|+|+++.||+.|.    ++|.|++|+ |||+|+|+++.+....       .     .. 
T Consensus       102 ~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~-------~-----~~-  164 (507)
T 1coy_A          102 SGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNNID-------Q-----AW-  164 (507)
T ss_dssp             SSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCC-------H-----HH-
T ss_pred             CCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCCCCC-------C-----cc-
Confidence            7789999999999999999999999999999996    579999999 9999999987543110       0     00 


Q ss_pred             EEccCCccChHHHHHHHHHHHHcCC-----CCC-CCCCC---------CCcceeeccccccCCCeecchhHHhHhhhcCC
Q psy10663        140 ITTIKTEKINLLRSTFSKAFEDIGF-----KSP-DTFTV---------SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDK  204 (572)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~a~~~~G~-----~~~-~~~~~---------~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~  204 (572)
                        .++.+..+ ..+.|.++++++|+     +.. |+ |.         ..+..++.|..+|.+| |+++..+||.++.++
T Consensus       165 --~~~~~~~~-~~~~~~~a~~~~G~~~~~~p~~~d~-n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~  239 (507)
T 1coy_A          165 --FESTEWYK-FARTGRKTAQRSGFTTAFVPNVYDF-EYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAAT  239 (507)
T ss_dssp             --HHHCGGGH-HHHHHHHHHHHTTCCEEECCBSBCH-HHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHT
T ss_pred             --ccccccch-HHHHHHHHHHHcCCCCccCCccccc-CcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhc
Confidence              01110256 88999999999999     543 33 21         1245677888889999 999999999998888


Q ss_pred             CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC---ceeEeeccceeEeccCcchhhHHHHHcC-CCChHHHhhcCCCce
Q psy10663        205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG---KTIKVNANREVVLAANSINSVRILQQSG-VGDAALLSKYNIPLV  280 (572)
Q Consensus       205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g---~~~~v~A~k~VILaAGai~Tp~LLl~Sg-IG~~~~l~~~Gi~~~  280 (572)
                      +|++|++++.|++|++++++++++||++.+.+|   +.++|+|+ +||||||+|+||+|||+|| ||        +||+.
T Consensus       240 ~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~lL~~Sg~iG--------~lpnl  310 (507)
T 1coy_A          240 GKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSMKAQG--------HLPNL  310 (507)
T ss_dssp             TCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTT--------SSTTS
T ss_pred             CCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHHHHhcccCC--------CCCcc
Confidence            899999999999999985434899999986566   46889996 9999999999999999999 98        36666


Q ss_pred             ecCcccCccccCCcccccEEEEeeCCCCCccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCCC
Q psy10663        281 KNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQ  360 (572)
Q Consensus       281 ~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (572)
                      .+  +||+||+||+... .......              +  ...|++....  ....+........|++++.. ..+  
T Consensus       311 ~d--~VG~~l~~h~~~~-~~~~~~~--------------~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~--  366 (507)
T 1coy_A          311 SS--QVGEGWGNNGNIM-VGRANHM--------------W--DATGSKQATI--PTMGIDNWADPTAPIFAEIA-PLP--  366 (507)
T ss_dssp             CT--TTTCCBBCTTEEE-EEEECCT--------------T--SCCCSCCCSS--CCEEEECTTCTTSCEEEEEE-CCC--
T ss_pred             Ch--hhCCccccCCccc-ccccccc--------------c--ccccccCCCc--ceEEEeccCCCCCCcEEEec-cCC--
Confidence            55  4999999999752 3211110              0  1234432211  11222222111133332221 000  


Q ss_pred             chhhhhhhhccccCchhHHHHHhhcCCCCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHH-
Q psy10663        361 DTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVK-  439 (572)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~-  439 (572)
                                     ..        +.  ..+.++..+.+|.++|+|+|+++|+    .|+++|+.++ | ..+.++++ 
T Consensus       367 ---------------~~--------~~--~~~~~~~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~  415 (507)
T 1coy_A          367 ---------------AG--------LE--TYVSLYLAITKNPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMAKK  415 (507)
T ss_dssp             ---------------CS--------SC--CCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHH
T ss_pred             ---------------HH--------Hh--hheeeeEEEeeeCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHHHH
Confidence                           00        00  2344555668899999999998765    7999999999 8 45677766 


Q ss_pred             HHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCce
Q psy10663        440 MVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLR  519 (572)
Q Consensus       440 ~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~  519 (572)
                      .+++++++.+.  +...    +.       +.+++  ++|   ...+++|++||||||      +|||++|||||++|||
T Consensus       416 ~~~~i~~~~~~--~~~~----~~-------~~~d~--~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nLr  471 (507)
T 1coy_A          416 VFDKINQKEGT--IYRT----DL-------FGVYY--KTW---GDDFTYHPLGGVLLN------KATDNFGRLPEYPGLY  471 (507)
T ss_dssp             HHHHHHHHHTC--CBCS----SC-------C--CC--CSS---BCSEESCCBCSSCTT------TTSCTTSBCTTSTTEE
T ss_pred             HHHHHHhhcCC--cccC----cc-------cccch--hhh---cccccccccCCcchh------heECCCCeEeccCCeE
Confidence            88999876441  1110    00       01111  112   346789999999999      6999999999999999


Q ss_pred             EecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663        520 VVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV  553 (572)
Q Consensus       520 V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~  553 (572)
                      |||+||||+++++||++||||||||+||+|+++.
T Consensus       472 VvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~  505 (507)
T 1coy_A          472 VVDGSLVPGNVGVNPFVTITALAERNMDKIISSD  505 (507)
T ss_dssp             ECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHT
T ss_pred             EeechhccCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=100.00  E-value=2.2e-48  Score=425.92  Aligned_cols=419  Identities=15%  Similarity=0.096  Sum_probs=273.6

Q ss_pred             cCcccchhhhhccceeccCChhhHHHHHhcCCCCC---ChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEcc
Q psy10663         67 QARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW---TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTI  143 (572)
Q Consensus        67 ~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W---~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~  143 (572)
                      .+..+||.+.+|.+...|..+.+  .+.  -..+|   .+.++.++|++.+..+..+..              .      
T Consensus       157 ~~~~vGG~~~~~~g~~~r~~~~e--~~~--~l~~~~v~~~~~l~~~~~~~~~l~~vgg~--------------~------  212 (623)
T 3pl8_A          157 VTRVVGGMSTAWTCATPRFDREQ--RPL--LVKDDADADDAEWDRLYTKAESYFQTGTD--------------Q------  212 (623)
T ss_dssp             ECCSTTGGGGTCCCBCCCCCGGG--SCC--SSTTCHHHHHHHHHHHHHHHHHHHTEESC--------------T------
T ss_pred             ccccccCcceeeccccccCChHH--hhh--hhcccCccChhhHHHHHHHHHHhcccccc--------------c------
Confidence            57789999999999999998853  111  11334   468899999999887642211              0      


Q ss_pred             CCccChHHHHHHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhh------cCCCCeEEeccceEEE
Q psy10663        144 KTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAI------KDKNTVQVSKNSEVTK  217 (572)
Q Consensus       144 ~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~------~~~~nl~i~~~~~V~~  217 (572)
                       + ..+.........+.........+ ... ......   ......|+++..+||.++      .+++|++|++++.|++
T Consensus       213 -~-~~~~~~~~~~~~l~~~~~~~~~~-~~~-p~a~~~---~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~v~~~~~V~~  285 (623)
T 3pl8_A          213 -F-KESIRHNLVLNKLTEEYKGQRDF-QQI-PLAATR---RSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACER  285 (623)
T ss_dssp             -T-TTCHHHHHHHHHHHHHTTTTSCC-EEC-CEEEEE---EETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEEEEE
T ss_pred             -c-cCccccccchHHHHHhhhhcccc-ccc-chhhcc---CCCCccccchHHhhhhhhhcchhhccCCCEEEEeCCEEEE
Confidence             1 11101111111222211100000 000 000000   012346888888999876      5667999999999999


Q ss_pred             EEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCccc
Q psy10663        218 LCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF  296 (572)
Q Consensus       218 i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~  296 (572)
                      |++++++++++||++.+ .+|+.+++.|+ +||||+|++.||+||++||||++.+|+.+||++  |||+||+||+||+..
T Consensus       286 i~~~~~~~~v~GV~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~  362 (623)
T 3pl8_A          286 VVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLV  362 (623)
T ss_dssp             EEECTTSSCEEEEEEEETTTCCEEEECEE-EEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEE
T ss_pred             EEEECCCCEEEEEEEEEcCCCcEEEEECC-EEEEcCCCcCCHHHHHhcCCCccccccccCCCC--CCcccccchhhCcCc
Confidence            99986556999999996 47888999996 999999999999999999999999999999999  999999999999999


Q ss_pred             ccEEEEeeCCCCC-------------c-cc--------------h--HHHHHHHHHcC-CCccccCCc-ccEEEEEeCCC
Q psy10663        297 FGLSYTFTKTPVS-------------S-YT--------------I--NEIIYEYLTQR-TGRFTDIGM-SNFIGYLDTDF  344 (572)
Q Consensus       297 ~~~~~~~~~~~~~-------------~-~~--------------~--~~~~~~~~~~~-~G~~~~~~~-~~~~~~~~~~~  344 (572)
                      . +.+.+++..++             . .+              .  ...+.+++... .+++...-. .+-..+.... 
T Consensus       363 ~-~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  440 (623)
T 3pl8_A          363 F-CQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQ-  440 (623)
T ss_dssp             E-EEEEECHHHHHHHTTTCEEESCTTSTTCEEECCTTCTTCSSCHHHHHHHHHHHHHCTTCCCSSCTTCCCCEEECCCB-
T ss_pred             e-EEEEECCcccccccccccccccCCCcceecccccCcccccCCchhhhhhhhhhhccccccccccccccccccccccc-
Confidence            4 88887653100             0 00              0  00111111111 232211000 0000000000 


Q ss_pred             CCCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCCeEE-EEEEecccCcceEEEecC--CCCCCCCeee
Q psy10663        345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILI-IGLVSLCPKAEGVVEINS--NDPTKNPTIR  421 (572)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~s~g~v~l~~--~d~~~~P~i~  421 (572)
                      ...| .+......         .+ ....+++.+..        .-.+. ....++.|.++|+|+|++  +|++|+|+++
T Consensus       441 ~~~~-~~~~~~~~---------~~-~~~~~~~~~~~--------~~~~~~~~~~e~~p~~~n~v~L~~~~~D~~g~P~~~  501 (623)
T 3pl8_A          441 PSHP-WHTQIHRD---------AF-SYGAVQQSIDS--------RLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPT  501 (623)
T ss_dssp             TTBC-EEEEEECC---------SC-CCSCCCCSSCG--------GGEEEEEEEECCCCCTTCEEEEEEEEECTTSSEEEE
T ss_pred             ccCc-chhhhhhh---------hc-ccccccccccc--------ceEEEEEEEEeeccCCCCEEEECCCCcCCCCCceEE
Confidence            0000 00000000         00 00011111111        01222 335678999999999986  8999999999


Q ss_pred             CCCCCCHH-HHHHHHHHHHHHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCC
Q psy10663        422 YPLYTEEE-DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPS  500 (572)
Q Consensus       422 ~~y~~~~~-D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~  500 (572)
                      ++|..+++ |++.+.++++.+++++++.+.......      +.     ..           ...+++|++||||||.++
T Consensus       502 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-----~~-----------~~~~~~H~~gt~~mg~~~  559 (623)
T 3pl8_A          502 FDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSL------PQ-----FM-----------EPGLVLHLGGTHRMGFDE  559 (623)
T ss_dssp             EECCCCTTHHHHHHHHHHHHHHHHHTTTEEECTTSC------SE-----EC-----------CTTTTCCCBCTTCBCSST
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHHHhcCCcccCch------hh-----cc-----------CCCCcccCCCceeCCCCC
Confidence            99999999 999999999999999886543321110      00     00           134689999999999862


Q ss_pred             CCCCcc-CCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCCCcccccee
Q psy10663        501 DPLAVV-GPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTT  562 (572)
Q Consensus       501 d~~~VV-D~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~~~~~~~~~  562 (572)
                      ..+||| |++|||||++||||+|+|+||+++++||++||||||+|+||+|+++++...+.+++
T Consensus       560 ~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~~~~~~~~  622 (623)
T 3pl8_A          560 KEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFTSEA  622 (623)
T ss_dssp             TTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCCCCC----
T ss_pred             CCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence            337997 99999999999999999999999999999999999999999999999888777654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.35  E-value=5e-06  Score=88.74  Aligned_cols=65  Identities=28%  Similarity=0.384  Sum_probs=51.2

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch-hhHHHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN-SVRILQQ  263 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~-Tp~LLl~  263 (572)
                      .|...+.+.|++|++++.|++|+.++ +++++||++. .+|+.++|+|+|.||||+|++. ++.+|..
T Consensus       207 ~L~~~~~~~Gv~i~~~t~v~~L~~~~-~g~v~GV~~~-~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~  272 (510)
T 4at0_A          207 PLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAK-QYGKEVAVRARRGVVLATGSFAYNDKMIEA  272 (510)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEECT-TCCEEEEEEE-ETTEEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHcCCEEEecCEeEEEEECC-CCcEEEEEEE-ECCcEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence            34333445699999999999999875 3789999988 4677789999659999999998 5665543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.56  E-value=0.00028  Score=76.12  Aligned_cols=63  Identities=22%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      .|.....+.+++|++++.|++|+.++ .++++||.+.+.+|+..+++|+ .||||+|++...+=|
T Consensus       255 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~A~-~VVlAtGg~s~~~~~  317 (566)
T 1qo8_A          255 TLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNKEM  317 (566)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCHHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEEcC-EEEEecCCcccCHHH
Confidence            33333445689999999999999873 2789999998667888889995 999999998864333

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.77  E-value=0.013  Score=62.99  Aligned_cols=65  Identities=25%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRILQQ  263 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LLl~  263 (572)
                      .|.....+.+++|++++.|++|+.++ .++++||++.+.+|+..+++|+ .||||+|.+.. +.+|..
T Consensus       260 ~L~~~~~~~gv~i~~~t~v~~l~~~~-~g~v~GV~~~~~~G~~~~i~A~-~VVlAtGg~~~~~~~~~~  325 (572)
T 1d4d_A          260 VLWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNERVSK  325 (572)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHcCCeEEecCEEEEEEECC-CCeEEEEEEEeCCCcEEEEEcC-EEEEeCCCCccCHHHHHH
Confidence            33333445699999999999998873 2789999998667888889995 99999999874 555543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=95.44  E-value=0.019  Score=61.83  Aligned_cols=63  Identities=19%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRIL  261 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LL  261 (572)
                      .|.....+.+++|++++.|++|+.++ +++++||.+.+.+|+..+++|+ .||||+|.+.. +.++
T Consensus       260 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          260 VLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNNERV  323 (571)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHH
T ss_pred             HHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECC-eEEEeCCCcccCHHHH
Confidence            34333455799999999999999874 2789999998557888889996 79999999875 4443

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=95.30  E-value=0.036  Score=60.06  Aligned_cols=54  Identities=13%  Similarity=0.086  Sum_probs=46.5

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ...+.|++|+.++.|++|+.+  +++++||.+.+ .+|+.++++|+ .||||+|++..
T Consensus       164 ~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  218 (621)
T 2h88_A          164 RSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAK-NTVIATGGYGR  218 (621)
T ss_dssp             HHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEE-EEEECCCCCGG
T ss_pred             HHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccc
Confidence            345689999999999999987  57999999886 47888899996 89999999875

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=94.87  E-value=0.057  Score=58.34  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhh
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV  258 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp  258 (572)
                      ++..+.+.+|++|+.++.|++|+.+  +++++||.+.+ .+|+.++++|+ .||||+|++...
T Consensus       140 L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s~~  199 (602)
T 1kf6_A          140 LFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCGGG
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCccc
Confidence            3344444556999999999999987  47899998875 47877889996 899999998765

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.70  E-value=0.051  Score=58.41  Aligned_cols=60  Identities=10%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.+++|+.++.|++|+.+  ++++.+|++.|. +|+..+|+|+ .||+|+|+. +..|+...|
T Consensus       198 a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~w-s~~l~~~~g  258 (571)
T 2rgh_A          198 AAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAK-LVINTSGPW-VDKVRNLNF  258 (571)
T ss_dssp             HHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBS-CEEECCGGG-HHHHHTTCC
T ss_pred             HHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcC-EEEECCChh-HHHHHHhhc
Confidence            34579999999999999988  468999998864 5666789996 899999986 777765444

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=94.59  E-value=0.043  Score=59.19  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .+.|++|+.++.|++|+.++ +++++||.+.+ .+|+.++++|+ .||||+|++..
T Consensus       154 ~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGg~~~  207 (588)
T 2wdq_A          154 LKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKAR-ATVLATGGAGR  207 (588)
T ss_dssp             HHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEEE-EEEECCCCCGG
T ss_pred             HhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEcC-EEEECCCCCcc
Confidence            45699999999999999863 36899999876 47888889996 99999999865

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=94.58  E-value=0.063  Score=57.51  Aligned_cols=61  Identities=20%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      +...|++|+.+++|++|..+  +++++||++.|. +|+..+++|+ .||+|+|+ .+..|+...|+
T Consensus       180 a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~-~s~~l~~~~g~  241 (561)
T 3da1_A          180 AVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAK-KVVNAAGP-WVDTLREKDRS  241 (561)
T ss_dssp             HHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEE-EEEECCGG-GHHHHHHTTTC
T ss_pred             HHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECC-EEEECCCc-chHHHHHhcCC
Confidence            34579999999999999987  578999999864 6777899996 89999997 47777776654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=94.49  E-value=0.045  Score=59.71  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.|++|+.++.|++|+.+  +++++||.+.+ .+|+.++++|+ .||||+|++..
T Consensus       168 a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  221 (660)
T 2bs2_A          168 CLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYGR  221 (660)
T ss_dssp             HHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCGG
T ss_pred             HHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcC-EEEEccCcchh
Confidence            34569999999999999987  57999999875 47888889996 99999999874

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.16  E-value=0.038  Score=58.25  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ  263 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~  263 (572)
                      .++.+.+|++++.|++|+.+  +++++||++.  +|+  ++.|+ .||++|+.-.|.+.|+-
T Consensus       231 ~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~--~g~--~~~ad-~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          231 FQDLGGEVVLNARVSHMETT--GNKIEAVHLE--DGR--RFLTQ-AVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TSC--EEECS-CEEECCC----------
T ss_pred             HHHhCCceeeecceeEEEee--CCeEEEEEec--CCc--EEEcC-EEEECCCHHHHHHHhcc
Confidence            45678999999999999998  6899999886  665  56786 89999999988887764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=93.88  E-value=0.063  Score=57.20  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=44.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCC-----CEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETK-----TKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~-----~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      .+.+|++|+.++.|++|+.++++     +++.||.+.+ .+|+.++++|+ .||||+|++..
T Consensus       149 ~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~  209 (540)
T 1chu_A          149 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGASK  209 (540)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCGG
T ss_pred             HcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence            33479999999999999984322     2899999986 36877889995 99999999864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.80  E-value=0.059  Score=53.88  Aligned_cols=59  Identities=8%  Similarity=0.118  Sum_probs=44.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc-CC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS-GV  266 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S-gI  266 (572)
                      +.+.+++|+++++|++|..+++ + ++.|..  .+|+..+++|+ .||+|+|+. |++|+... |+
T Consensus       160 ~~~~Gv~i~~~~~v~~i~~~~~-~-~~~v~~--~~g~~~~~~a~-~VV~A~G~~-s~~l~~~~~g~  219 (369)
T 3dme_A          160 AESDGAQLVFHTPLIAGRVRPE-G-GFELDF--GGAEPMTLSCR-VLINAAGLH-APGLARRIEGI  219 (369)
T ss_dssp             HHHTTCEEECSCCEEEEEECTT-S-SEEEEE--CTTSCEEEEEE-EEEECCGGG-HHHHHHTEETS
T ss_pred             HHHCCCEEECCCEEEEEEEcCC-c-eEEEEE--CCCceeEEEeC-EEEECCCcc-hHHHHHHhcCC
Confidence            4557999999999999998743 2 233544  36766789996 899999985 77887665 53

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.40  E-value=0.067  Score=55.22  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=42.2

Q ss_pred             hhcCCCCeEEeccc---eEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        200 AIKDKNTVQVSKNS---EVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       200 ~~~~~~nl~i~~~~---~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ..+.+.+++|++++   .|++|+.+  +++++||+..  +|+  +++|+ .||+|+|+. |++|+
T Consensus       169 ~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~--~G~--~i~Ad-~VV~AtG~~-s~~l~  225 (438)
T 3dje_A          169 REAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTA--DGK--IWRAE-RTFLCAGAS-AGQFL  225 (438)
T ss_dssp             HHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEET--TTE--EEECS-EEEECCGGG-GGGTS
T ss_pred             HHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEEC--CCC--EEECC-EEEECCCCC-hhhhc
Confidence            33455789999999   99999987  5788888775  554  68896 899999986 55554

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=93.09  E-value=0.14  Score=54.16  Aligned_cols=58  Identities=24%  Similarity=0.382  Sum_probs=47.4

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~  256 (572)
                      .+|...+...|++|+.+++|++|..+  ++++++|.+.+.+|+..+++|+ .||+|.|.-.
T Consensus       115 ~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad-~VI~AdG~~S  172 (512)
T 3e1t_A          115 DMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHAR-FIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEE-EEEECCCTTC
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcC-EEEECCCcch
Confidence            44544444579999999999999987  5789999998778887899996 8999999743

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=92.42  E-value=0.4  Score=46.16  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=41.3

Q ss_pred             hhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----------CCCceeEeeccceeEeccCc
Q psy10663        199 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----------PQGKTIKVNANREVVLAANS  254 (572)
Q Consensus       199 ~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----------~~g~~~~v~A~k~VILaAGa  254 (572)
                      ..+.+..|++|+.++.|++|..+  ++++.||.+.+          ..|+..+++|+ .||+|+|+
T Consensus       127 ~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad-~VV~AtG~  189 (284)
T 1rp0_A          127 SKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAK-IVVSSCGH  189 (284)
T ss_dssp             HHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEE-EEEECCCS
T ss_pred             HHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECC-EEEECCCC
Confidence            33445579999999999999987  47888998752          12455789996 89999996

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=92.22  E-value=0.12  Score=56.34  Aligned_cols=51  Identities=18%  Similarity=0.116  Sum_probs=42.3

Q ss_pred             Ce-EEeccceEEEEEEeCC-CCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        206 TV-QVSKNSEVTKLCFDET-KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       206 nl-~i~~~~~V~~i~~~~~-~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |+ +|+.++.|++|+.+++ .++++||.+.+ .+|+.++++|+ .||||+|++..
T Consensus       166 gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGG~~~  219 (643)
T 1jnr_A          166 GEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGATL  219 (643)
T ss_dssp             CGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBCS
T ss_pred             CCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcC-EEEECCCcccc
Confidence            89 9999999999998741 13999998865 46777789995 99999999875

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=91.92  E-value=0.15  Score=52.29  Aligned_cols=53  Identities=15%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      ....+.+|++++.|++|..+  ++++++|..   +|+  +++|+ .||+|+++-.+.+||-
T Consensus       206 ~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~---~g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          206 ISANGGKIHTGQEVSKILIE--NGKAAGIIA---DDR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHTTCEEECSCCEEEEEEE--TTEEEEEEE---TTE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHHcCCEEEECCceeEEEEE--CCEEEEEEE---CCE--EEECC-EEEECCCHHHHHHhcC
Confidence            44568999999999999998  578888865   343  67896 8999999999988664

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=91.81  E-value=0.12  Score=56.47  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             CeEEeccceEEEEEEeCC-CCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663        206 TVQVSKNSEVTKLCFDET-KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       206 nl~i~~~~~V~~i~~~~~-~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |++|+.++.|++|+.+++ .++++||.+.+ .+|+.+.++|+ .||||+|.++.
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVLATGG~g~  234 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKAN-AMVVACGGAVN  234 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBCS
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeC-EEEECCCcccc
Confidence            999999999999998742 14999998876 46888899995 99999999873

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.76  E-value=0.18  Score=50.74  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=42.1

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.+++|+.++.|++|..+  ++++++|+..  +|   +++|+ .||+|+|+. |+.|+...|
T Consensus       159 ~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~--~g---~i~a~-~VV~A~G~~-s~~l~~~~g  213 (382)
T 1y56_B          159 AKEYGAKLLEYTEVKGFLIE--NNEIKGVKTN--KG---IIKTG-IVVNATNAW-ANLINAMAG  213 (382)
T ss_dssp             HHHTTCEEECSCCEEEEEES--SSBEEEEEET--TE---EEECS-EEEECCGGG-HHHHHHHHT
T ss_pred             HHHCCCEEECCceEEEEEEE--CCEEEEEEEC--Cc---EEECC-EEEECcchh-HHHHHHHcC
Confidence            44578999999999999887  4678787653  44   68896 899999985 666665544

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=91.36  E-value=0.28  Score=50.85  Aligned_cols=58  Identities=17%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~  256 (572)
                      .+|...+...+++|+.+++|++|..+  +++++||.+.+. +|+..+++|+ .||.|.|+-.
T Consensus       104 ~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~s  162 (453)
T 3atr_A          104 QRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSR  162 (453)
T ss_dssp             HHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-EEEECCGGGC
T ss_pred             HHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcC-EEEECcCCch
Confidence            34433334478999999999999987  578999988755 7777789996 8999999743

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=91.31  E-value=0.28  Score=50.72  Aligned_cols=51  Identities=18%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      ..+.+++|++++.|++|..+  ++++.+|++.  +|+  +++|+ .||+|+|+...|.
T Consensus       144 ~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~--~G~--~i~Ad-~VVlAtGg~s~~~  194 (447)
T 2i0z_A          144 LKDLGVKIRTNTPVETIEYE--NGQTKAVILQ--TGE--VLETN-HVVIAVGGKSVPQ  194 (447)
T ss_dssp             HHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TCC--EEECS-CEEECCCCSSSGG
T ss_pred             HHHCCCEEEeCcEEEEEEec--CCcEEEEEEC--CCC--EEECC-EEEECCCCCcCCC
Confidence            44579999999999999987  4677888764  554  58896 8999999988764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=90.91  E-value=0.32  Score=51.20  Aligned_cols=56  Identities=16%  Similarity=0.091  Sum_probs=44.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      +...+++|+.+++|++|..+  + ++.+|.+.| .+|+..+++|+ .||+|+|+. +..|+-
T Consensus       159 a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~~-s~~l~~  215 (501)
T 2qcu_A          159 VVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQAR-GLVNATGPW-VKQFFD  215 (501)
T ss_dssp             HHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEES-CEEECCGGG-HHHHHH
T ss_pred             HHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECC-EEEECCChh-HHHHHH
Confidence            34568999999999999987  3 577888875 36777889996 899999986 666654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.59  E-value=0.24  Score=51.10  Aligned_cols=57  Identities=18%  Similarity=0.235  Sum_probs=41.6

Q ss_pred             cCCCCeEEeccceEEEEEEeC-------------CCCEEEEEEEEcCCCceeEe--eccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDE-------------TKTKVTGVEFRNPQGKTIKV--NANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~-------------~~~~a~gV~~~~~~g~~~~v--~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.+++|+.+++|++|..+.             +++++.+|+..  +|   ++  +|+ .||+|+|+. |++|+-..|
T Consensus       191 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~--~g---~i~~~Ad-~VV~AtG~~-s~~l~~~~g  262 (448)
T 3axb_A          191 ASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLS--DG---TRVEVGE-KLVVAAGVW-SNRLLNPLG  262 (448)
T ss_dssp             HHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEET--TS---CEEEEEE-EEEECCGGG-HHHHHGGGT
T ss_pred             HHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeC--CC---EEeecCC-EEEECCCcC-HHHHHHHcC
Confidence            445789999999999998720             14567777653  45   57  896 899999985 777765444

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.22  E-value=0.5  Score=45.75  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      ++..+.+..++++++++.|.+|.-+  ++++.+|.+...+|+..++.++ .||+|.|..-++.+|-
T Consensus       188 ~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  250 (315)
T 3r9u_A          188 TVEKVKKNEKIELITSASVDEVYGD--KMGVAGVKVKLKDGSIRDLNVP-GIFTFVGLNVRNEILK  250 (315)
T ss_dssp             HHHHHHHCTTEEEECSCEEEEEEEE--TTEEEEEEEECTTSCEEEECCS-CEEECSCEEECCGGGB
T ss_pred             HHHHHHhcCCeEEEeCcEEEEEEcC--CCcEEEEEEEcCCCCeEEeecC-eEEEEEcCCCCchhhh
Confidence            4444445789999999999999876  4688899887557888889997 8999999876666543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=90.17  E-value=0.78  Score=44.45  Aligned_cols=67  Identities=24%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      .++..+.+..++++++++.|++|.-+   +++.+|++.+ .+|+..++.++ .||+|.|..-+..+|..+|+
T Consensus       194 ~~~~~~~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          194 IYVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             HHHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHHHTTC
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEecc---CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHhhcCe
Confidence            34455556679999999999999765   4677888875 35877789997 89999998777778777664

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=89.54  E-value=0.37  Score=48.75  Aligned_cols=55  Identities=33%  Similarity=0.438  Sum_probs=41.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      ..+.+++|+.++.|++|..+  ++++++|+..  +|   +++|+ .||+|+|+. ++.|+...|
T Consensus       184 ~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~--~g---~~~a~-~vV~a~G~~-s~~l~~~~g  238 (405)
T 2gag_B          184 ANEMGVDIIQNCEVTGFIKD--GEKVTGVKTT--RG---TIHAG-KVALAGAGH-SSVLAEMAG  238 (405)
T ss_dssp             HHHTTCEEECSCCEEEEEES--SSBEEEEEET--TC---CEEEE-EEEECCGGG-HHHHHHHHT
T ss_pred             HHHCCCEEEcCCeEEEEEEe--CCEEEEEEeC--Cc---eEECC-EEEECCchh-HHHHHHHcC
Confidence            44578999999999999887  4667777653  45   68896 899999985 556665544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=88.23  E-value=0.79  Score=44.33  Aligned_cols=58  Identities=19%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      .+..+++|++++.|++|.-+  ++++.+|++.+ .+|++.++.++ .||+|.|..-++.+|.
T Consensus       190 ~~~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  248 (310)
T 1fl2_A          190 RSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWLE  248 (310)
T ss_dssp             HTCTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             hhCCCeEEecCCceEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHHh
Confidence            34479999999999999755  46788999885 35777889997 8999999876666653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=88.10  E-value=0.49  Score=47.26  Aligned_cols=54  Identities=24%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +.+.+++|+.++.|++|..++  +. ++|+.  .+|   +++|+ .||+|+|+ .|+.|+...|
T Consensus       164 a~~~Gv~i~~~~~V~~i~~~~--~~-~~V~t--~~g---~i~a~-~VV~A~G~-~s~~l~~~~g  217 (381)
T 3nyc_A          164 IRRNQGQVLCNHEALEIRRVD--GA-WEVRC--DAG---SYRAA-VLVNAAGA-WCDAIAGLAG  217 (381)
T ss_dssp             HHHTTCEEESSCCCCEEEEET--TE-EEEEC--SSE---EEEES-EEEECCGG-GHHHHHHHHT
T ss_pred             HHHCCCEEEcCCEEEEEEEeC--Ce-EEEEe--CCC---EEEcC-EEEECCCh-hHHHHHHHhC
Confidence            445689999999999999874  44 34433  344   68896 89999997 4677766544

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=87.54  E-value=0.6  Score=45.47  Aligned_cols=60  Identities=28%  Similarity=0.460  Sum_probs=47.7

Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      ..+++|++++.|++|.-+  ++++.+|.+.+ .+|+..++.++ .||+|.|..-++.+|..+|+
T Consensus       202 ~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGD--GKKVTGVKYKDRTTGEEKLIETD-GVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HTTCCEECSEEEEEEEES--SSSEEEEEEEETTTCCEEEECCS-EEEECCCEEECCGGGTTSCC
T ss_pred             cCCcEEEcCCeEEEEecC--CceEEEEEEEEcCCCceEEEecC-EEEEeeCCccChHHHhhccc
Confidence            579999999999999865  45688888874 36777789996 89999998877777655543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=87.49  E-value=0.72  Score=46.86  Aligned_cols=64  Identities=19%  Similarity=0.356  Sum_probs=50.4

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG  267 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG  267 (572)
                      ++....++.++++++++.|++|..+  ++++++|++.  +|+  ++.++ .||+|+|..-+..||..+|+-
T Consensus       189 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~--dG~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          189 YFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLS--DGN--TLPCD-LVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TSC--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeC--CCC--EEEcC-EEEECcCCccCHHHHHhCCCC
Confidence            4444455689999999999999876  4788888875  565  57787 899999998777888777753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=87.00  E-value=0.84  Score=44.61  Aligned_cols=62  Identities=8%  Similarity=0.178  Sum_probs=47.9

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ++..+.+..++++++++.|.+|.-+  ++++++|.+.+. +|+..++.++ .||+|.|..-++.+|
T Consensus       214 ~~~~l~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  276 (338)
T 3itj_A          214 MQKRAEKNEKIEILYNTVALEAKGD--GKLLNALRIKNTKKNEETDLPVS-GLFYAIGHTPATKIV  276 (338)
T ss_dssp             HHHHHHHCTTEEEECSEEEEEEEES--SSSEEEEEEEETTTTEEEEEECS-EEEECSCEEECCGGG
T ss_pred             HHHHHHhcCCeEEeecceeEEEEcc--cCcEEEEEEEECCCCceEEEEeC-EEEEEeCCCCChhHh
Confidence            3444344569999999999999876  467889998853 5666789997 899999987766655

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=86.99  E-value=0.72  Score=47.03  Aligned_cols=65  Identities=25%  Similarity=0.340  Sum_probs=50.7

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG  267 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG  267 (572)
                      .++....+..+++|++++.|++|..+  ++++++|++.  +|+  ++.++ .||+|+|..-+..+|..+|+-
T Consensus       198 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~--dG~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  262 (415)
T 3lxd_A          198 EFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQ--DGS--VIPAD-IVIVGIGIVPCVGALISAGAS  262 (415)
T ss_dssp             HHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEES--SSC--EEECS-EEEECSCCEESCHHHHHTTCC
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeC--CCC--EEEcC-EEEECCCCccChHHHHhCCCC
Confidence            34444455689999999999999875  4688888875  564  57787 899999998888888777753

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=86.28  E-value=1.5  Score=43.27  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCC-----------------CCEEEEEEEEc----CCC------ceeEeecccee
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDET-----------------KTKVTGVEFRN----PQG------KTIKVNANREV  248 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~-----------------~~~a~gV~~~~----~~g------~~~~v~A~k~V  248 (572)
                      .++..+.+.+|++|+.++.|+.|+.+++                 +.++.||.+..    .+|      ...+|+|+ .|
T Consensus       165 ~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak-~V  243 (344)
T 3jsk_A          165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAP-VI  243 (344)
T ss_dssp             HHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECS-EE
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcC-EE
Confidence            3444455558999999999999998752                 12899998742    233      34789996 99


Q ss_pred             EeccCcchh
Q psy10663        249 VLAANSINS  257 (572)
Q Consensus       249 ILaAGai~T  257 (572)
                      |+|.|.-..
T Consensus       244 V~ATG~~s~  252 (344)
T 3jsk_A          244 ISTTGHDGP  252 (344)
T ss_dssp             EECCCSSSS
T ss_pred             EECCCCCch
Confidence            999997543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=86.09  E-value=0.81  Score=46.51  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI  255 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai  255 (572)
                      .+|...+.+.+++|+.++.|++|..++  +..+ |.+.+.+|+..+++|+ .||+|.|.-
T Consensus       110 ~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~-v~v~~~~g~~~~~~a~-~vV~A~G~~  165 (421)
T 3nix_A          110 KTLADEAARQGVDVEYEVGVTDIKFFG--TDSV-TTIEDINGNKREIEAR-FIIDASGYG  165 (421)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEEET--TEEE-EEEEETTSCEEEEEEE-EEEECCGGG
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCCEEEEEcC-EEEECCCCc
Confidence            344443444589999999999999884  3322 4555468888899996 899999964

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=85.80  E-value=0.85  Score=51.21  Aligned_cols=56  Identities=25%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV  266 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI  266 (572)
                      +.+.+++|+.++.|++|..+  ++++++|+..  +|   +++|+ .||+|+|+. ++.|+...|+
T Consensus       161 a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~--~G---~i~Ad-~VV~AaG~~-s~~l~~~~g~  216 (830)
T 1pj5_A          161 TESAGVTYRGSTTVTGIEQS--GGRVTGVQTA--DG---VIPAD-IVVSCAGFW-GAKIGAMIGM  216 (830)
T ss_dssp             HHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TE---EEECS-EEEECCGGG-HHHHHHTTTC
T ss_pred             HHHcCCEEECCceEEEEEEe--CCEEEEEEEC--Cc---EEECC-EEEECCccc-hHHHHHHhCC
Confidence            44568999999999999987  4677777653  44   68996 899999985 5777665554

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=85.78  E-value=1.6  Score=43.25  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      .++.+++|++++.|++|..+  ++++.+|.+...+|+..++.++ .||+|.|..-++.+|..+|
T Consensus       212 ~~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~  272 (360)
T 3ab1_A          212 RANGTIDVYLETEVASIEES--NGVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLARWD  272 (360)
T ss_dssp             HHHTSEEEESSEEEEEEEEE--TTEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGGSS
T ss_pred             hhcCceEEEcCcCHHHhccC--CCceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHhhc
Confidence            34568999999999999876  4678888886447777788997 8999999665555655444

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=85.50  E-value=1.2  Score=43.12  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-C-CceeEeeccceeEeccCcchhhHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-Q-GKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~-g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      .++.+++|++++.|++|..+  ++++.+|++.+. + |+..++.++ .||+|.|..-++.+|
T Consensus       194 l~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~~  252 (320)
T 1trb_A          194 VENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF  252 (320)
T ss_dssp             HHTSSEEEECSCEEEEEEEC--SSSEEEEEEECCTTCCCCEEEECS-EEEECSCEEESCGGG
T ss_pred             cccCCeEEEcCceeEEEEcC--CCceEEEEEEeccCCCceEEEEcC-EEEEEeCCCCChHHh
Confidence            45679999999999999866  457888998843 3 666788997 899999987666654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=85.05  E-value=0.76  Score=49.36  Aligned_cols=50  Identities=18%  Similarity=0.326  Sum_probs=38.6

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      +.+|++|+ ++.|+.|..+  +++++||...  +|.  +++|+ .||+|+|+.-..++
T Consensus       135 ~~~GVeI~-~~~Vt~L~~e--~g~V~GV~t~--dG~--~i~Ad-aVVLATG~~s~~~~  184 (637)
T 2zxi_A          135 NQENLYIK-QEEVVDIIVK--NNQVVGVRTN--LGV--EYKTK-AVVVTTGTFLNGVI  184 (637)
T ss_dssp             TCTTEEEE-ESCEEEEEES--SSBEEEEEET--TSC--EEECS-EEEECCTTCBTCEE
T ss_pred             hCCCCEEE-EeEEEEEEec--CCEEEEEEEC--CCc--EEEeC-EEEEccCCCccCce
Confidence            34799994 7899999887  4788899775  563  68895 89999998755443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=84.80  E-value=1.4  Score=44.48  Aligned_cols=51  Identities=24%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      +.+.+++|+.++.|++|..++  +.+   .+...+|   +++|+ .||+|+|+. ++.|+-
T Consensus       163 a~~~Gv~i~~~~~V~~i~~~~--~~v---~v~t~~g---~i~a~-~VV~A~G~~-s~~l~~  213 (397)
T 2oln_A          163 AQAAGATLRAGETVTELVPDA--DGV---SVTTDRG---TYRAG-KVVLACGPY-TNDLLE  213 (397)
T ss_dssp             HHHTTCEEEESCCEEEEEEET--TEE---EEEESSC---EEEEE-EEEECCGGG-HHHHHG
T ss_pred             HHHcCCEEECCCEEEEEEEcC--CeE---EEEECCC---EEEcC-EEEEcCCcC-hHHHhh
Confidence            345689999999999999873  433   3332233   68896 899999984 556553

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=84.03  E-value=2.2  Score=39.35  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      +.++++|+ +++|++|..+  ++++.+|...  +|+  +++|+ .||+|+|..-..++
T Consensus        80 ~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~--~g~--~i~a~-~VV~A~G~~s~~~~  129 (232)
T 2cul_A           80 GLRPLHLF-QATATGLLLE--GNRVVGVRTW--EGP--PARGE-KVVLAVGSFLGARL  129 (232)
T ss_dssp             TCTTEEEE-ECCEEEEEEE--TTEEEEEEET--TSC--CEECS-EEEECCTTCSSCEE
T ss_pred             cCCCcEEE-EeEEEEEEEe--CCEEEEEEEC--CCC--EEECC-EEEECCCCChhhce
Confidence            33599999 6799999887  4677777653  554  67896 89999999655554

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=83.99  E-value=1.1  Score=47.59  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=39.0

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ....+++|+.++.|++|..+  ++++.+|.+.  +|+  ++.|+ .||+|.|+-..
T Consensus       230 l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~--~G~--~i~Ad-~VVlA~G~~s~  278 (549)
T 3nlc_A          230 IIELGGEIRFSTRVDDLHME--DGQITGVTLS--NGE--EIKSR-HVVLAVGHSAR  278 (549)
T ss_dssp             HHHTTCEEESSCCEEEEEES--SSBEEEEEET--TSC--EEECS-CEEECCCTTCH
T ss_pred             HHhcCCEEEeCCEEEEEEEe--CCEEEEEEEC--CCC--EEECC-EEEECCCCChh
Confidence            34469999999999999987  4678888775  554  58896 89999998553

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=83.97  E-value=2.2  Score=41.81  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=40.5

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCC--CC--EEEEEEEEc----CCC------ceeEeec--------------ccee
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDET--KT--KVTGVEFRN----PQG------KTIKVNA--------------NREV  248 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~--~~--~a~gV~~~~----~~g------~~~~v~A--------------~k~V  248 (572)
                      .+..+.+.+|++|+.++.|+.|+.+++  ++  +++||.+..    .+|      ...+|.|              .+.|
T Consensus       152 L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~V  231 (326)
T 2gjc_A          152 VLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVI  231 (326)
T ss_dssp             HHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEE
T ss_pred             HHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEE
Confidence            334445568999999999999998752  14  899998741    233      3467888              2389


Q ss_pred             EeccCc
Q psy10663        249 VLAANS  254 (572)
Q Consensus       249 ILaAGa  254 (572)
                      |+|.|.
T Consensus       232 V~ATG~  237 (326)
T 2gjc_A          232 LSTTGH  237 (326)
T ss_dssp             EECCCC
T ss_pred             EECcCC
Confidence            999994

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=83.96  E-value=1.4  Score=46.57  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=47.7

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH-HHHHcCC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR-ILQQSGV  266 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~-LLl~SgI  266 (572)
                      ++....++.+++|++++.|++|..++ ++++.++.+...+|+ .++.++ .||+|+|..-+.. +|..+|+
T Consensus       260 ~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~v~~~~v~~~~G~-~~i~aD-~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          260 YVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGE-MRIETD-FVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEE-EEEECS-CEEECCCCEECCHHHHHHHTC
T ss_pred             HHHHHHHhCCcEEEECCEEEEEEEcC-CCceEEEEEEECCCc-EEEEcC-EEEECcCCccCCccCHHHcCC
Confidence            44444456799999999999998754 356655555534554 478897 8999999877666 6666664

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=83.91  E-value=1.1  Score=48.01  Aligned_cols=61  Identities=15%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----CCCce-------eEeeccceeEeccCcchhh
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQGKT-------IKVNANREVVLAANSINSV  258 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----~~g~~-------~~v~A~k~VILaAGai~Tp  258 (572)
                      .+|...+...+++|+.++.|++|+.+++ ++++||.+.+    .+|+.       .+++|+ .||+|.|+-..-
T Consensus       148 ~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad-~VV~AdG~~S~v  219 (584)
T 2gmh_A          148 SWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAK-VTIFAEGCHGHL  219 (584)
T ss_dssp             HHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECS-EEEECCCTTCHH
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECC-EEEEeeCCCchH
Confidence            4444434445999999999999998753 6788998764    35653       578996 999999987653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=83.81  E-value=2  Score=41.43  Aligned_cols=65  Identities=12%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQS  264 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~S  264 (572)
                      ++..+.+..+++|++++.|.+|.-+  ++++.+|.+.+ .+|++.++.++ .||+|.|..-+..+|-.+
T Consensus       184 ~~~~l~~~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~  249 (311)
T 2q0l_A          184 TLEHAKNNDKIEFLTPYVVEEIKGD--ASGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLKQE  249 (311)
T ss_dssp             HHHHHHTCTTEEEETTEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGBCT
T ss_pred             HHHHHhhCCCeEEEeCCEEEEEECC--CCcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhhcc
Confidence            3334344579999999999999876  35777888874 26777789997 899999987666665443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=83.50  E-value=1.8  Score=42.08  Aligned_cols=61  Identities=13%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ++..+.+..+++|++++.|++|.-+   +++.+|++.+ .+|+..++.++ .||+|.|..-+..+|
T Consensus       193 ~~~~l~~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l  254 (325)
T 2q7v_A          193 AQARAFANPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFV  254 (325)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             HHHHHHhcCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHH
Confidence            3344445679999999999999764   4677888874 36777789997 899999987666655

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=83.07  E-value=2.3  Score=41.38  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHH
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      .+.+..+++|++++.|++|.-++++.++.+|++.+. +|+..++.++ .||+|.|..-+..+|
T Consensus       203 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          203 RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGHEPATKFL  264 (333)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             HHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecC-EEEEEeCCccchHHh
Confidence            334678999999999999986632127888888753 6777789997 899999987776655

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=83.01  E-value=0.99  Score=49.34  Aligned_cols=52  Identities=15%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      +.+.+++|+.++.|++|+.++  +++ +|+.  .+|.  +++|+ .||+|+|+. ++.|+.
T Consensus       427 a~~~Gv~i~~~t~V~~l~~~~--~~v-~V~t--~~G~--~i~Ad-~VVlAtG~~-s~~l~~  478 (676)
T 3ps9_A          427 AQQQGLQIYYQYQLQNFSRKD--DCW-LLNF--AGDQ--QATHS-VVVLANGHQ-ISRFSQ  478 (676)
T ss_dssp             HHHTTCEEEESCCEEEEEEET--TEE-EEEE--TTSC--EEEES-EEEECCGGG-GGCSTT
T ss_pred             HHhCCCEEEeCCeeeEEEEeC--CeE-EEEE--CCCC--EEECC-EEEECCCcc-hhcccc
Confidence            345689999999999999884  442 4443  3554  48896 899999986 665543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=82.74  E-value=0.98  Score=48.47  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS  254 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa  254 (572)
                      .+|...+...|++|+.+++|++|..+  ++.+++|.+.+ +|+..+++|+ .||.|.|+
T Consensus       132 ~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~-~G~~~~i~Ad-lVV~AdG~  186 (591)
T 3i3l_A          132 KLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRR-GGESVTVESD-FVIDAGGS  186 (591)
T ss_dssp             HHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEE-TTEEEEEEES-EEEECCGG
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEec-CCceEEEEcC-EEEECCCC
Confidence            44544445579999999999999887  35577888773 7777889996 89999997

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=82.56  E-value=1.2  Score=45.46  Aligned_cols=50  Identities=12%  Similarity=0.214  Sum_probs=39.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      ....+.+|++++.|++|..+  ++++  |  . .+|+  +++|+ .||+|+|+-.+++||
T Consensus       199 ~~~~G~~i~~~~~V~~i~~~--~~~v--V--~-~~g~--~~~ad-~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          199 IMENKGKILTRKEVVEINIE--EKKV--Y--T-RDNE--EYSFD-VAISNVGVRETVKLI  248 (421)
T ss_dssp             HHTTTCEEESSCCEEEEETT--TTEE--E--E-TTCC--EEECS-EEEECSCHHHHHHHH
T ss_pred             HHHCCCEEEcCCeEEEEEEE--CCEE--E--E-eCCc--EEEeC-EEEECCCHHHHHHhc
Confidence            45568999999999999876  4555  3  3 3554  57886 899999999988876

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=82.28  E-value=2  Score=45.22  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=44.8

Q ss_pred             CCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHH
Q psy10663        204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRIL  261 (572)
Q Consensus       204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LL  261 (572)
                      .+|++|++++.|++|.-+  ++++++|.+.+ .+|++.++.++ .||+|.|..-+..+|
T Consensus       403 ~~gV~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          403 LKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHSVALA-GIFVQIGLLPNTHWL  458 (521)
T ss_dssp             CTTEEEECSEEEEEEEEC--SSSEEEEEEEETTTCCEEEEECS-EEEECCCEEESCGGG
T ss_pred             CCCcEEEeCCEEEEEEcC--CCcEEEEEEEeCCCCceEEEEcC-EEEECcCCCCCchHH
Confidence            379999999999999765  46788999986 36777889997 899999987665555

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=82.20  E-value=0.86  Score=45.60  Aligned_cols=57  Identities=21%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS  264 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S  264 (572)
                      |...+.+.+++|+.++.|++|..++  +++ +|..  .+|   +++|+ .||+|+|+. ++.|+-..
T Consensus       170 l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~v~~--~~g---~~~a~-~vV~A~G~~-s~~l~~~~  226 (382)
T 1ryi_A          170 YVKAAKMLGAEIFEHTPVLHVERDG--EAL-FIKT--PSG---DVWAN-HVVVASGVW-SGMFFKQL  226 (382)
T ss_dssp             HHHHHHHTTCEEETTCCCCEEECSS--SSE-EEEE--TTE---EEEEE-EEEECCGGG-THHHHHHT
T ss_pred             HHHHHHHCCCEEEcCCcEEEEEEEC--CEE-EEEc--CCc---eEEcC-EEEECCChh-HHHHHHhc
Confidence            3333445689999999999998763  444 5543  244   68896 899999985 66665443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=81.75  E-value=0.91  Score=47.27  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ++.|++|+.++.| +|+.+  ++++.||.+.+.+|   +++|+ .||||+|+...
T Consensus       130 ~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g---~~~a~-~VVlAtGg~~~  177 (472)
T 2e5v_A          130 REEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGL---VEDVD-KLVLATGGYSY  177 (472)
T ss_dssp             HHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEE---ECCCS-EEEECCCCCGG
T ss_pred             HhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCC---eEEee-eEEECCCCCcc
Confidence            5679999999999 99887  47899998864333   36685 89999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=81.20  E-value=1.7  Score=44.83  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=43.4

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEE--EEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTG--VEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~g--V~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      .|+....++-+.+|..+++|++|..++++++...  |...+..|+..++.++ .||||.|+  +|+
T Consensus       131 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d-~lVlAtG~--~p~  193 (463)
T 3s5w_A          131 DYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR-ALVVSPGG--TPR  193 (463)
T ss_dssp             HHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEES-EEEECCCC--EEC
T ss_pred             HHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeC-EEEECCCC--CCC
Confidence            5666555666789999999999998743355543  4444334666789996 89999997  554

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=80.52  E-value=1.1  Score=48.24  Aligned_cols=49  Identities=20%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663        203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR  259 (572)
Q Consensus       203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~  259 (572)
                      +.+|++| .++.|+.|..+  ++++++|...  +|  .+++|+ .||+|+|+.-..+
T Consensus       136 ~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~--dG--~~I~Ad-~VVLATGt~s~~~  184 (651)
T 3ces_A          136 NQPNLMI-FQQAVEDLIVE--NDRVVGAVTQ--MG--LKFRAK-AVVLTVGTFLDGK  184 (651)
T ss_dssp             TCTTEEE-EECCEEEEEES--SSBEEEEEET--TS--EEEEEE-EEEECCSTTTCCE
T ss_pred             hCCCCEE-EEEEEEEEEec--CCEEEEEEEC--CC--CEEECC-EEEEcCCCCccCc
Confidence            3379999 57899999887  4678898774  56  368895 8999999865433

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=80.24  E-value=1  Score=46.81  Aligned_cols=49  Identities=20%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI  255 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai  255 (572)
                      +.+..|.+|++++.|++|+.++ +++++||+..  +|+  +++|+ .||+++|-+
T Consensus       265 ~~~~~Gg~i~l~t~V~~I~~d~-~g~v~gV~~~--~G~--~i~Ad-~VI~a~~~~  313 (475)
T 3p1w_A          265 MCAINGGTFMLNKNVVDFVFDD-DNKVCGIKSS--DGE--IAYCD-KVICDPSYV  313 (475)
T ss_dssp             HHHHC--CEESSCCEEEEEECT-TSCEEEEEET--TSC--EEEEE-EEEECGGGC
T ss_pred             HHHHcCCEEEeCCeEEEEEEec-CCeEEEEEEC--CCc--EEECC-EEEECCCcc
Confidence            3456799999999999999943 4789999875  565  47896 899999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	572
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	2e-34
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	6e-04
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	7e-30
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	9e-24
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	2e-23
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	6e-23
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-21
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-06
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-20
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	6e-08
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	1e-12
d1cf3a2	196	d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus	4e-12
d1ju2a2	170	d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond	3e-06
d1kdga2	181	d.16.1.1 (A:513-693) Flavoprotein domain of flavoc	6e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	7e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.004

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  132 bits (332), Expect = 2e-34
 Identities = 70/306 (22%), Positives = 112/306 (36%), Gaps = 18/306 (5%)

Query: 2   LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
             A+L      SVL++E+G    D          + + I  S +D  +         L  
Sbjct: 32  TAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGD-IFGSSVDHAYETVE-----LAT 85

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTK 117
            +    +     LGGS+++N     R  +   + WE +    GW + ++ A   + ER +
Sbjct: 86  NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 145

Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAF----EDIGFKSPDTFTVS 173
               +             G                S   KA     ED G  +   F   
Sbjct: 146 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCG 205

Query: 174 DHVGIAPPMYYLKDGQRMI-ASSIFLRAIKDKNTVQVSKNSEVTKLCFDE--TKTKVTGV 230
           D  G++     L + Q    A+  +L     +  +QV     V K+   +  T  +  GV
Sbjct: 206 DPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 265

Query: 231 EFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVGKR 289
           EF   +G T  V A  EV+LAA S  S  IL+ SG+G  ++L    I  V +LP G+   
Sbjct: 266 EFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSM 325

Query: 290 LSLHPM 295
           +     
Sbjct: 326 MPKEMG 331

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 485 TTTNHPTGTLRMGPPSDPL-AVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
           T  + P G   M P    +  VV    RV G   LRV+   + P +M +    V   +A 
Sbjct: 314 TVVDLPVGLCSMMP--KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMAL 371

Query: 544 RCATFIQS 551
           + +  I  
Sbjct: 372 KISDAILE 379

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  119 bits (298), Expect = 7e-30
 Identities = 58/307 (18%), Positives = 107/307 (34%), Gaps = 20/307 (6%)

Query: 1   CLTAKLLAQSG-CSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGL 56
              A  L ++    VL++E G    +       P  +   I  + +D  ++         
Sbjct: 37  LTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYG-QIFGTTVDQNYLTVP------ 89

Query: 57  GLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIER 115
            + +    +   + LGGS++IN     R  +   + WE    M GW + +M     + E 
Sbjct: 90  LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEA 149

Query: 116 TKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
            +  T        +      GT               S   KA  +              
Sbjct: 150 ARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFL 209

Query: 176 VGIAPPMYYLKDGQRMIA-----SSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--TKVT 228
            G    +  + +           +  +L     ++ +++     V K+ F +T    +  
Sbjct: 210 CGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAV 269

Query: 229 GVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVG 287
           GV F   +     V A  EV+LAA S  S  IL+ SG+G  ++L + N+  + +LP G+ 
Sbjct: 270 GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGIC 329

Query: 288 KRLSLHP 294
             +S   
Sbjct: 330 SMMSREL 336

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  100 bits (250), Expect = 9e-24
 Identities = 43/314 (13%), Positives = 91/314 (28%), Gaps = 32/314 (10%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDAPISTAIPAM------------------WHESIQDSKL 42
            + A  L Q+G    I+E G       +   +                            
Sbjct: 20  AVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGF 79

Query: 43  DWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWT 102
                ++         + + +++ Q R +GG S++N  +     +  +E       +  +
Sbjct: 80  GINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEI---LPSVDS 136

Query: 103 YSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDI 162
               +  + R           +   E+           T  KT + +   + F     D 
Sbjct: 137 NEMYNKYFPRANTGLGVNNIDQAWFES---TEWYKFARTGRKTAQRSGFTTAFVPNVYDF 193

Query: 163 GFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE 222
            +   +        G+   + Y  +  +      +L        + ++    VTK+    
Sbjct: 194 EYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT 253

Query: 223 TKTKVTGVEFRNPQGKTI--KVNANREVVLAANSINSVRILQQSG-VGDAALLSK----- 274
                  +E  + QG  +  KV     V  AA S+ + ++L      G    LS      
Sbjct: 254 GSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEG 313

Query: 275 YNIPLVKNLPGVGK 288
           + + L K     G+
Sbjct: 314 WGVLLNKATDNFGR 327

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 99.2 bits (246), Expect = 2e-23
 Identities = 66/346 (19%), Positives = 117/346 (33%), Gaps = 42/346 (12%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGL--GL 58
           C  A  L++    VL+LE G         P  +   +      +    E +    +   +
Sbjct: 39  CPLAATLSEK-YKVLVLERGSL-------PTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90

Query: 59  KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
            ++ +   + RVLGG+SIIN  ++ R +   Y          W    ++  Y  +E T +
Sbjct: 91  SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIV 146

Query: 119 DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGI 178
               +++                          +S    AF + G      F++    G 
Sbjct: 147 YKPNSQS-------------------------WQSVTKTAFLEAGVHPNHGFSLDHEEGT 181

Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR--NPQ 236
                   +     A+   L      N       S    +  +      TGV +R  N  
Sbjct: 182 RITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGT 241

Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF 296
                V +  EV+++A +I + ++L  SGVG  + LS  NIP+V + P VG+ L    + 
Sbjct: 242 PHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLD 301

Query: 297 FGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDT 342
                T     +     +   Y   +   G +  +G    I  L  
Sbjct: 302 GDFRVTGINA-LRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 346

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 98.5 bits (244), Expect = 6e-23
 Identities = 42/286 (14%), Positives = 82/286 (28%), Gaps = 27/286 (9%)

Query: 1   CLTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
            ++A  L ++G   L+LE G                   D +  W       P       
Sbjct: 15  AVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWL 74

Query: 60  DNVVR------------------LNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW 101
           D V R                  +   R +GG S++N  +     +  +E          
Sbjct: 75  DVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI---LPRVD 131

Query: 102 TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFED 161
           +    D  + R             +++             + +      L + F     D
Sbjct: 132 SSEMYDRYFPRANSM---LRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYD 188

Query: 162 IGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD 221
            G+   +         +A  + Y  +  +      +L A      V +    +V  +   
Sbjct: 189 FGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQT 248

Query: 222 ETKTKVTGVEFRNPQGKT--IKVNANREVVLAANSINSVRILQQSG 265
           +       VE ++  GK    K  + R + L A S+ S  +L ++ 
Sbjct: 249 KDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 294

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 93.5 bits (231), Expect = 3e-21
 Identities = 28/304 (9%), Positives = 71/304 (23%), Gaps = 26/304 (8%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
           C  A+ L  +G  V + + G        I A    +++  K    FV             
Sbjct: 17  CTYARELVGAGYKVAMFDIGEIDS-GLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVP 75

Query: 61  NVVRLNQARVLGGSSIINDMIHDRGSQYDYE--------RWEGLNMTGWTYSDMDAIYTR 112
               +               + +  +                 +      ++     + R
Sbjct: 76  VNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDR 135

Query: 113 IERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTV 172
            +R          + +    D +     T  +          F ++       +      
Sbjct: 136 EQR------PLLVKDDADADDAEWDRLYTKAE-SYFQTGTDQFKESIRHNLVLNKLAEEY 188

Query: 173 SDHVGIAPPMYYL----KDGQRMIASSIFLRAIKDKNTVQVSKN------SEVTKLCFDE 222
                                   +++         NT    +           ++  + 
Sbjct: 189 KGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNA 248

Query: 223 TKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKN 282
             +++  +   +              VL A ++++ ++L  SG G     +  N P +  
Sbjct: 249 LNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP 308

Query: 283 LPGV 286
             G 
Sbjct: 309 SLGS 312

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 477 RCAIKYLSTTTNHPTGTLRMGP-PSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
                          G+ RMG    +    V  D RV GF NL + G   IP     + +
Sbjct: 296 GRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPT 355

Query: 536 AVALMLAERCATFI 549
             A+ LA +   +I
Sbjct: 356 LTAMSLAIKSCEYI 369

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 90.5 bits (223), Expect = 2e-20
 Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 35/306 (11%)

Query: 1   CLTAKLLAQSGCSVLILEAGP--DAPISTAIPAMWHESIQDSKLD-----WGFVLESNPS 53
            + A  L+++G  VL+LE G            A W  S   +K D          +SNP 
Sbjct: 15  IIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP- 73

Query: 54  YGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRI 113
                    + +    ++GG + +N  ++   +  D+    G   +   ++   +     
Sbjct: 74  ---FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTS----- 125

Query: 114 ERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
                       +  +     D   T      E+   + S   K          D     
Sbjct: 126 ------------KLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYK 173

Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
           DHV      +   +G+R    + +L+    +       N  V+ +  + ++  + GV+  
Sbjct: 174 DHVFG-YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQ--ILGVQTN 230

Query: 234 NPQG---KTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRL 290
           +P       I V     V+L+A +  + RIL QSG+G   ++               +  
Sbjct: 231 DPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQ 290

Query: 291 SL-HPM 295
            +  P+
Sbjct: 291 WINLPV 296

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 476 YRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
              A+   +   N P G   +G      AVV  + +V G +NL +V   +IP     +  
Sbjct: 281 AAAALPPQNQWINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQ 339

Query: 536 AVALMLAERCATFIQS 551
              +  AE+ A  I +
Sbjct: 340 GTLMSAAEQAAAKILA 355

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 64.8 bits (157), Expect = 1e-12
 Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 30/202 (14%)

Query: 300 SYTFTKTPVSSYTINEI-------IYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV 352
           +       V      E          + L  +  ++ +  ++    +  T  K   +   
Sbjct: 17  AGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYEN-- 74

Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSN 412
               +               + +    E F+        +   L  L P   G V I S+
Sbjct: 75  -YRNWL-------------LDEDVAFAELFMDTE---GKINFDLWDLIPFTRGSVHILSS 117

Query: 413 DPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQ 471
           DP        P +   E D+     A K+   +      K +               +  
Sbjct: 118 DPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNA 174

Query: 472 SEEYYRCAIKYLSTTTNHPTGT 493
           +   +   +        H   +
Sbjct: 175 TLSQWSDYVLQNFRPNWHAVSS 196

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 63.2 bits (153), Expect = 4e-12
 Identities = 25/207 (12%), Positives = 51/207 (24%), Gaps = 21/207 (10%)

Query: 293 HPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV 352
                  +     T   +       +    +  G +++         L+T  +   + AV
Sbjct: 5   QTTA---TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHE----LLNTKLEQWAEEAV 57

Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-----LIIGLVSLCPKAEGVV 407
            +  F     L     L  +    D +       ++  +         +  L P   G V
Sbjct: 58  ARGGFHNTTAL-----LIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYV 112

Query: 408 EINSNDP-TKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECA 466
            I   DP   +       +  E D+     A ++   +      + +             
Sbjct: 113 HILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDN 169

Query: 467 KCKYQSEEYYRCAIKYLSTTTNHPTGT 493
                    +   I Y      H  GT
Sbjct: 170 LAYDADLSAWTEYIPYHFRPNYHGVGT 196

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 10/111 (9%), Positives = 36/111 (32%), Gaps = 6/111 (5%)

Query: 388 DKPILIIGLVSLCPKAEGVVEIN-SNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMK 446
           +            P + G + +  S++   +P +++  Y+   D+ + ++ +K +  ++ 
Sbjct: 59  NSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLS 118

Query: 447 YRDFKNFQTNSVQLEIKECAKC-----KYQSEEYYRCAIKYLSTTTNHPTG 492
               K ++   +                   +  +    +    +  H  G
Sbjct: 119 TDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHG 169

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 13/93 (13%)

Query: 401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL 460
            ++ G + I++        +  P      D   +L A+  V   +         T  V  
Sbjct: 102 IQSRGRIGIDAALRG--TVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVT- 158

Query: 461 EIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGT 493
                     Q+ E Y  A    +  +NH   +
Sbjct: 159 ----------QTLEEYVDAYDPATMNSNHWVSS 181

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 36/329 (10%), Positives = 82/329 (24%), Gaps = 43/329 (13%)

Query: 1   CLTAKLLAQSGCSVLILEAGPD------------------APISTAIPAMWHESIQDSKL 42
           C+ + +++ +G  VL ++  P                     +      M      +  L
Sbjct: 19  CILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDL 78

Query: 43  DWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWT 102
              F++ +     + L   V R    +V+ GS +       +    + E      M  + 
Sbjct: 79  IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFE 138

Query: 103 YSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDI 162
                     +     +  +T    +              +  + I+      +    D 
Sbjct: 139 KRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDD 198

Query: 163 GFKSP--------DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSE 214
               P          ++ S       P  Y   G   +       +           N  
Sbjct: 199 YLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSA--IYGGTYMLNKP 256

Query: 215 VTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSK 274
           V  +  +  K      E     G+  +     + ++   S    R+    G       S 
Sbjct: 257 VDDIIMENGKVVGVKSE-----GEVARC----KQLICDPSYVPDRVPIDDGSESQVFCSC 307

Query: 275 ------YNIPLVKNLPGVGKRLSLHPMFF 297
                 +      ++  + KR++     F
Sbjct: 308 SYDATTHFETTCNDIKDIYKRMAGSAFDF 336

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 33/270 (12%), Positives = 65/270 (24%), Gaps = 34/270 (12%)

Query: 1   CLTAKLLAQSGCSVLILEAGPDA-------------PISTAIPAMWHESIQDSKLDWGFV 47
           C+ + LL+  G  VL ++                        P    E       D  + 
Sbjct: 18  CILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWN 77

Query: 48  LESNPSYGLGLKDNVVRLNQARVL----------------GGSSIINDMIHDRGSQYDYE 91
           ++  P + +   +    L    V                 G    +     +  S     
Sbjct: 78  VDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMG 137

Query: 92  RWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLL 151
            +E   M  +           +   +   +   T  E       G  T   I        
Sbjct: 138 IFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWT 197

Query: 152 RSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSK 211
              + +      F+    +  S       P  Y   G   +    F R            
Sbjct: 198 NDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQG-FARLSAIYG-GTYML 255

Query: 212 NSEVTKLCFDETKTKVTGVEFRNPQGKTIK 241
           ++ + ++ + +   K  GV+    +  T K
Sbjct: 256 DTPIDEVLYKKDTGKFEGVK---TKLGTFK 282

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 35/321 (10%), Positives = 83/321 (25%), Gaps = 41/321 (12%)

Query: 3   TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGF--VLESNPSYGLGLKD 60
            A  L   G   ++LE+           A+   ++    ++ G    L+  P+       
Sbjct: 15  VAHHLRSRGTDAVLLESSARLG-----GAVGTHALAGYLVEQGPNSFLDREPATRALAAA 69

Query: 61  NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
             +          +         R           L            +   +   +   
Sbjct: 70  LNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPE 129

Query: 121 VRTETESETVTVDNDGTVTITTIKT-----------------------EKINLLRSTFSK 157
              E+ +           T   +                         +     RS    
Sbjct: 130 GVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILG 189

Query: 158 AFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTK 217
           A      +            ++  +     G       + + A+           + V  
Sbjct: 190 AIRAQKAQRQAALPAGTAPKLSGALSTFDGG-----LQVLIDALAASLGDAAHVGARVEG 244

Query: 218 LCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSK-YN 276
           L  ++   ++   E     G+  +++  + VVLAA +  + ++L+      AAL++  YN
Sbjct: 245 LAREDGGWRLIIEE----HGRRAELSVAQ-VVLAAPAHATAKLLRPLDDALAALVAGIYN 299

Query: 277 IPLVKNLPGVGKRLSLHPMFF 297
           +  ++ +  +   L   P   
Sbjct: 300 LGHLERVAAIDAALQRLPGLH 320

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 22/257 (8%)

Query: 3   TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNV 62
            A +LA +G  V +LEA          P     + ++   + G+     P         V
Sbjct: 45  AAYVLAGAGHQVTVLEASE-------RPGGRVRTYRNE--EAGWYANLGPMRLPEKHRIV 95

Query: 63  VRLNQARVLGGSSII----NDMIHDRGSQY---DYERWEGLNMTGWTYSDMDAIYTRIER 115
               +   L  +       N     +  +    + ++  GL       S+      ++  
Sbjct: 96  REYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYE 155

Query: 116 TKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
             L  V  E +    +   +   T +T +        S  +             + VS  
Sbjct: 156 ESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFI 215

Query: 176 VGIAPPMYYLKDGQRMIA---SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF 232
             +     +  + +             A+      +V  N++V K+  ++ K  V    +
Sbjct: 216 ESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVV---Y 272

Query: 233 RNPQGKTIKVNANREVV 249
                +T  V A+  +V
Sbjct: 273 ETLSKETPSVTADYVIV 289

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	572
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	99.7
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.65
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.58
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.57
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.5
d2f5va2	198	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.46
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.33
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.05
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.16
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	96.82
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.97
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.93
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.92
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.24
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.12
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.78
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	92.07
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.65
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.9
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	90.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.88
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.4
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.22
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.03
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	87.98
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.26
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.41
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.1
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	82.58
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	82.49
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	82.37
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.93
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	80.64

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=8.4e-59  Score=480.31  Aligned_cols=274  Identities=25%  Similarity=0.333  Sum_probs=227.2

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC---CccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI---STAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~---~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      |+|+||||++++||||||||+....   ....|..+.. ++++.++|.|.+.++.     ..++.+.+++|++|||||.|
T Consensus        31 vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~-~~~~~~dw~~~t~~~~-----~~~r~~~~~~G~~lGGsS~i  104 (385)
T d1cf3a1          31 TTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGD-IFGSSVDHAYETVELA-----TNNQTALIRSGNGLGGSTLV  104 (385)
T ss_dssp             HHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTT-TTTSTTBCCEECCCCT-----TTSCCCEECCBCSTTGGGGT
T ss_pred             HHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhh-hcCCCCCcCccccCcC-----CCCceeeeccccccccccee
Confidence            5799999987799999999987542   2344555555 6678899999987653     67888999999999999999


Q ss_pred             ccceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCccc-----ccCCCcccccCCCcEEEEccCC--ccCh
Q psy10663         78 NDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRT-----ETESETVTVDNDGTVTITTIKT--EKIN  149 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~-----~~~~~~~~~g~~Gp~~~~~~~~--~~~~  149 (572)
                      |+|+|+|+.+.||+.|.+. ++.+|+|++|+|||+|+|++..+....     ..+..  .|+..+|+.+.....  ...|
T Consensus       105 n~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~p  182 (385)
T d1cf3a1         105 NGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNAS--CHGVNGTVHAGPRDTGDDYSP  182 (385)
T ss_dssp             SCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGG--GSCSSSSEEEBCCCCSSCBCT
T ss_pred             eeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCccccccccccccc--ccCCcccccccccccccccCH
Confidence            9999999999999999985 789999999999999999988654221     12234  788888988765432  1557


Q ss_pred             HHHHHHHHHHHHcCCCCC-CCCCCCCcceeeccccccC-CCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCC--C
Q psy10663        150 LLRSTFSKAFEDIGFKSP-DTFTVSDHVGIAPPMYYLK-DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--T  225 (572)
Q Consensus       150 ~~~~~~~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~-~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~--~  225 (572)
                       +.+.|.++++++|++.. |. |.....+++.|+.++. .+.|.++...|+.++.+++|++|+++++|+||+|++++  .
T Consensus       183 -~~~~~~~a~~~~G~~~~~d~-n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~  260 (385)
T d1cf3a1         183 -IVKALMSAVEDRGVPTKKDF-GCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTP  260 (385)
T ss_dssp             -HHHHHHHHHHTTTCCBCCCT-TSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEESCEEEEEEEECSSSSC
T ss_pred             -HHHHHHHHHHHcCCCCcCCc-ccccccccccccccccccccchhhhhhhcCchhcCCcccccCCceEEEEEEcCCCcee
Confidence             88999999999999987 66 8777777777665443 44555667789999899999999999999999998643  3


Q ss_pred             EEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCc
Q psy10663        226 KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP  284 (572)
Q Consensus       226 ~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp  284 (572)
                      ||+||++.+.+|++++++|+||||||||||+||+|||+|||||+++|+++||+++.|||
T Consensus       261 ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP  319 (385)
T d1cf3a1         261 RAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP  319 (385)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC
T ss_pred             EEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECC
Confidence            89999998789999999999899999999999999999999999999999987777665

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=6.6e-59  Score=481.41  Aligned_cols=283  Identities=22%  Similarity=0.339  Sum_probs=237.2

Q ss_pred             CccccccCCCCCeEEEEcccCCCCC---CccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPI---STAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII   77 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~---~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~   77 (572)
                      |+|.||||++++||||||||++...   ..+.|..+.. ++++.++|.|.++|+.      .++.+.+++|++|||||.|
T Consensus        38 vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~-~~~~~~dw~~~t~p~~------~~r~~~~~~G~~lGGsS~i  110 (391)
T d1gpea1          38 TVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQ-IFGTTVDQNYLTVPLI------NNRTNNIKAGKGLGGSTLI  110 (391)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTT-TTTSTTBCCEECCCCT------TSCCCEECCBCSTTGGGGT
T ss_pred             HHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHH-hhCCCcccCceeeecC------CCcEeeeceeeccCcccce
Confidence            4799999985689999999987533   2356776666 6778899999998864      5778899999999999999


Q ss_pred             ccceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCccc-----ccCCCcccccCCCcEEEEccCC--ccCh
Q psy10663         78 NDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRT-----ETESETVTVDNDGTVTITTIKT--EKIN  149 (572)
Q Consensus        78 n~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~-----~~~~~~~~~g~~Gp~~~~~~~~--~~~~  149 (572)
                      |+|+++|+++.||+.|.+ .|+++|+|+++.|||+|+|++..+....     ..+..  .|+..||+++.....  ...+
T Consensus       111 n~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~p  188 (391)
T d1gpea1         111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNAT--CHGTNGTVQSGARDNGQPWSP  188 (391)
T ss_dssp             SCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGG--GCCBSSSEEEBCCCCSSCBCT
T ss_pred             eeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCcccc--ccCCCCcccccccccccccCH
Confidence            999999999999999987 4889999999999999999987543221     12244  899999999875432  2567


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCcceeecccccc-CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCC--CCE
Q psy10663        150 LLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYL-KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET--KTK  226 (572)
Q Consensus       150 ~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~--~~~  226 (572)
                       ..+.|.++++++|++..+.++.+.+.++..++.++ .++.|.++..+|+.++..++|++|+++++|+||+|+.+  +.+
T Consensus       189 -~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~~~g~r  267 (391)
T d1gpea1         189 -IMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQ  267 (391)
T ss_dssp             -HHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEE
T ss_pred             -HHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhccceeeEEeeeCCCCCce
Confidence             88999999999999877332666666665554443 45678888888998888999999999999999999753  348


Q ss_pred             EEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCc-ccCccccCC
Q psy10663        227 VTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVGKRLSLH  293 (572)
Q Consensus       227 a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp-~VG~nl~dH  293 (572)
                      |+||+|.+.+|.+++|+|+||||||||||+||+|||+|||||+++|+++||+++.||| |||+||+||
T Consensus       268 a~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~nl~dh  335 (391)
T d1gpea1         268 AVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRE  335 (391)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCBSCGG
T ss_pred             EEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCcccccccccC
Confidence            9999998778888999999999999999999999999999999999999999999999 799999877

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=3.9e-53  Score=433.45  Aligned_cols=327  Identities=20%  Similarity=0.295  Sum_probs=257.3

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCC--ccccccchhh--hcC---CCccceeeeecCCCcCCCCCCceeeeecCcccch
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPIS--TAIPAMWHES--IQD---SKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG   73 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~--~~~p~~~~~~--~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGG   73 (572)
                      |+|.||||+ |+||||||+|+.....  ...+..+...  ...   ....|.+.+.++..    ..++.+.+++|++|||
T Consensus        16 v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~G~~lGG   90 (360)
T d1kdga1          16 IAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----WWCKDITVFAGCLVGG   90 (360)
T ss_dssp             HHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----TBCTTBSSCCBCSTTG
T ss_pred             HHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----cCCccccccceeeecc
Confidence            579999997 9999999999865321  1111111110  111   12345666666653    5677889999999999


Q ss_pred             hhhhccceeccCChhhHHHHHhcCCCCC--ChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHH
Q psy10663         74 SSIINDMIHDRGSQYDYERWEGLNMTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLL  151 (572)
Q Consensus        74 sS~~n~~~~~r~~~~df~~w~~~g~~~W--~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~  151 (572)
                      ||.||+|+++|+.+.||+.|.     +|  +|++++|||+|+|+.+...       .  .|+.+|+..       ..+ .
T Consensus        91 sS~in~~~~~r~~~~D~~~~~-----gwp~~~~~l~py~~~~e~~~~~~-------~--~~~~~g~~~-------~~~-~  148 (360)
T d1kdga1          91 GTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPST-------D--HPSTDGQRY-------LEQ-S  148 (360)
T ss_dssp             GGGTSCCBCCCCCGGGGCGGG-----TCCGGGSCCHHHHHHHHHHSCCB-------S--CCSTTSCCC-------SCH-H
T ss_pred             hhccccccccccchhhheecc-----cccccccchhhhhhhhhcccccc-------c--eecCCCccc-------ccc-h
Confidence            999999999999999999875     45  8999999999999988543       2  556666543       234 5


Q ss_pred             HHHHHHHHHHcCCCCC---CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEE
Q psy10663        152 RSTFSKAFEDIGFKSP---DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVT  228 (572)
Q Consensus       152 ~~~~~~a~~~~G~~~~---~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~  228 (572)
                      ...+.+.+++.|+...   +. +.....+++.|+.+|.+|.|+|+..+||.++.+++|++|+++++|+||+++  +++|+
T Consensus       149 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d--~~ra~  225 (360)
T d1kdga1         149 FNVVSQLLKGQGYNQATINDN-PNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQIL  225 (360)
T ss_dssp             HHHHHHHHHTTTCEECCGGGS-TTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEEE
T ss_pred             hHHHHHHHHHhhccCCCcccC-CCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEe--CCEEE
Confidence            5667777888886543   33 445567889999999999999999999999999999999999999999998  68999


Q ss_pred             EEEEEcC---CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeC
Q psy10663        229 GVEFRNP---QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK  305 (572)
Q Consensus       229 gV~~~~~---~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~  305 (572)
                      ||++.+.   .++..++.|+|+||||||||+||+|||+|||||+++|+.+||.     |.||++|.+|.           
T Consensus       226 GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~-----p~v~~~l~~~~-----------  289 (360)
T d1kdga1         226 GVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN-----PTAAAALPPQN-----------  289 (360)
T ss_dssp             EEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTS-----HHHHHHSCCGG-----------
T ss_pred             EEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHHhhcC-----ccccccccccc-----------
Confidence            9999854   3566789998899999999999999999999999999887752     22333321110           


Q ss_pred             CCCCccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCCCCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhc
Q psy10663        306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKV  385 (572)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (572)
                                                                                                      
T Consensus       290 --------------------------------------------------------------------------------  289 (360)
T d1kdga1         290 --------------------------------------------------------------------------------  289 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccccccccc
Q psy10663        386 NADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKEC  465 (572)
Q Consensus       386 ~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~  465 (572)
                                                                                             .        
T Consensus       290 -----------------------------------------------------------------------~--------  290 (360)
T d1kdga1         290 -----------------------------------------------------------------------Q--------  290 (360)
T ss_dssp             -----------------------------------------------------------------------G--------
T ss_pred             -----------------------------------------------------------------------c--------
Confidence                                                                                   0        


Q ss_pred             ccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHH
Q psy10663        466 AKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC  545 (572)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~  545 (572)
                                          ...||+|+|.|+.++. +.|||++++|+|.+||||+|+|+||..++.||+.++|++||++
T Consensus       291 --------------------~~~~p~g~~~~~~~~~-~~v~~~~~~~~g~~~l~~~~a~~~p~~~~~~~~~~~~~~ae~a  349 (360)
T d1kdga1         291 --------------------WINLPVGMTTIGSSPQ-SAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA  349 (360)
T ss_dssp             --------------------CBCCCTTTTCBCSCTT-TCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHH
T ss_pred             --------------------eecccceeeecCCCCc-ccEECccceeeccCCceEEeeecccccCCCCCCcchhHHHHHH
Confidence                                1258889999997543 6999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCC
Q psy10663        546 ATFIQSPV  553 (572)
Q Consensus       546 ad~I~~~~  553 (572)
                      ||.|++..
T Consensus       350 a~~il~~~  357 (360)
T d1kdga1         350 AAKILALA  357 (360)
T ss_dssp             HHHHHHST
T ss_pred             HHHHhhcc
Confidence            99998754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=1.4e-47  Score=390.28  Aligned_cols=258  Identities=23%  Similarity=0.290  Sum_probs=202.0

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhccc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDM   80 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~   80 (572)
                      |+|.||||+  +||||||+|+.......++..... .++...+|.+.+.++.    ...++.+.+.+|++|||||.||+|
T Consensus        40 vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~rG~~lGGsS~in~~  112 (351)
T d1ju2a1          40 PLAATLSEK--YKVLVLERGSLPTAYPNVLTADGF-VYNLQQEDDGKTPVER----FVSEDGIDNVRGRVLGGTSIINAG  112 (351)
T ss_dssp             HHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGH-HHHHHSCCCSSSSEEE----EECTTSCEEEEECBTTGGGGTSCC
T ss_pred             HHHHHhcCC--CCEEEEecCCCCcCccccccchhh-hccCcCCCCCCCcccc----ccCCCceeeeeeeeccccccccee
Confidence            479999984  899999999864221121111111 1111223444444443    245677899999999999999999


Q ss_pred             eeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHHHH
Q psy10663         81 IHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFE  160 (572)
Q Consensus        81 ~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a~~  160 (572)
                      +|+|+++.||+.|.    .+|+|+++.|||+++|......                       +. ... ....+.+++.
T Consensus       113 ~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~-----------------------~~-~~~-~~~~~~~a~~  163 (351)
T d1ju2a1         113 VYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYK-----------------------PN-SQS-WQSVTKTAFL  163 (351)
T ss_dssp             EECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBC-----------------------CC-CCH-HHHHHHHHHH
T ss_pred             eeccCCHHHHhhcc----cccChhHhCcceeecccccccc-----------------------cc-ccc-ccccccchhh
Confidence            99999999999885    6899999999999999764211                       11 223 5566677888


Q ss_pred             HcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCC-CCEEEEEEEEcCCCc
Q psy10663        161 DIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET-KTKVTGVEFRNPQGK  238 (572)
Q Consensus       161 ~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~-~~~a~gV~~~~~~g~  238 (572)
                      +.|++.. ++ +...+.+++.+..+|.++.|+++..+||++ +.++|++|++++.|+||+++.. +.+|+||++.+.+|.
T Consensus       164 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~  241 (351)
T d1ju2a1         164 EAGVHPNHGF-SLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGT  241 (351)
T ss_dssp             HTTCCCEEEE-CCBCCSEEEECEESBCTTSBBCCGGGGGGG-SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSC
T ss_pred             hhcccccccc-ccccccccccccccccCCCcccccchhhcc-chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCc
Confidence            8898876 45 555666777787788777777778889987 5789999999999999999853 458999999977665


Q ss_pred             e--eEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCccc
Q psy10663        239 T--IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF  296 (572)
Q Consensus       239 ~--~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~  296 (572)
                      .  ..++|+|+||||||||+||+|||+|||||+++|+++||+++.|+|+||+|||||+..
T Consensus       242 ~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~  301 (351)
T d1ju2a1         242 PHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLD  301 (351)
T ss_dssp             EEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBC
T ss_pred             eEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCc
Confidence            4  458888899999999999999999999999999999999999999999999999866

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=9.3e-39  Score=328.15  Aligned_cols=244  Identities=15%  Similarity=0.109  Sum_probs=167.1

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCccccccchh-------hhc-----------CCCccceeeeecCCCcCCCCCCce
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHE-------SIQ-----------DSKLDWGFVLESNPSYGLGLKDNV   62 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~-------~~~-----------~~~~~w~~~~~~~~~~~~~~~~~~   62 (572)
                      ++|.||||+ |+||||||+|+++......+..+..       ..+           ...+.|.+...+..........+.
T Consensus        21 v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (370)
T d3coxa1          21 VAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSG   99 (370)
T ss_dssp             HHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCBCCCCBCSEEEEECSS
T ss_pred             HHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCcccccccccccccCCCc
Confidence            479999986 9999999999765221111110000       000           011233333333322211223456


Q ss_pred             eeeecCcccchhhhhccceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEc
Q psy10663         63 VRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITT  142 (572)
Q Consensus        63 ~~~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~  142 (572)
                      +.+.++++|||+|.+|+++++|+++.||+.|..   ..+.+++++|||+++|+++......              .....
T Consensus       100 ~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~---~~~~~~~~~~~y~~~e~~lgv~~~~--------------~~~~~  162 (370)
T d3coxa1         100 IKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP---SVDSNEMYNKYFPRANTGLGVNNID--------------QAWFE  162 (370)
T ss_dssp             CEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCCC--------------HHHHH
T ss_pred             ceeeeeccccccccccCceeccCCHHHhhcccc---cCCcHHHHHHHHHHHHHhcCCcccc--------------CCccc
Confidence            788999999999999999999999999999963   2235788999999999988543210              00111


Q ss_pred             cCCccChHHHHHHHHHHHHcCCCCCCCCCC-------------CCcceeeccccccCCCeecchhHHhHhhhcCCCCeEE
Q psy10663        143 IKTEKINLLRSTFSKAFEDIGFKSPDTFTV-------------SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQV  209 (572)
Q Consensus       143 ~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~-------------~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i  209 (572)
                      .+. ..+ ..+.+.+.+++.|++....+..             ..+..++.|...|.++.|+|+..+||+++.+++|++|
T Consensus       163 ~~~-~~~-~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i  240 (370)
T d3coxa1         163 STE-WYK-FARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI  240 (370)
T ss_dssp             HCG-GGH-HHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred             CCC-Ccc-HHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHHHHHHHHhCCCcEE
Confidence            122 345 7788899999999864311011             1233444555666788899999999999999999999


Q ss_pred             eccceEEEEEEeCCCCEEEEEEEEcCCCc---eeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        210 SKNSEVTKLCFDETKTKVTGVEFRNPQGK---TIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       210 ~~~~~V~~i~~~~~~~~a~gV~~~~~~g~---~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +++++|++|++++++.+.+.|+..+..++   +++++|+ +||||||+|+||+|||+|+
T Consensus       241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~-~VILaAGai~Tp~LLL~S~  298 (370)
T d3coxa1         241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSMK  298 (370)
T ss_dssp             ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHHH
T ss_pred             EecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECC-EEEEeeCHHHhHHHHHhCC
Confidence            99999999999965555556666655554   4679996 8999999999999999994

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=1e-38  Score=328.13  Aligned_cols=170  Identities=11%  Similarity=0.123  Sum_probs=108.0

Q ss_pred             eeecCcccchhhhhccceeccCChhhHHHHHhcC----CCCC--ChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCc
Q psy10663         64 RLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN----MTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGT  137 (572)
Q Consensus        64 ~~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g----~~~W--~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp  137 (572)
                      .+.+++.+||+|.+|++++.|+.+.||+.|...+    ...|  .|+++++||.+.++.+...                 
T Consensus       112 ~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  174 (379)
T d2f5va1         112 GQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKES-----------------  174 (379)
T ss_dssp             TCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHHHHHHTEESCTTTTC-----------------
T ss_pred             cchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhhhhhhhHHHHHHHHH-----------------
Confidence            3456789999999999999999999997654321    1234  6777888887777654211                 


Q ss_pred             EEEEccCCccChHHHHHHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhH------hhhcCCCCeEEec
Q psy10663        138 VTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFL------RAIKDKNTVQVSK  211 (572)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl------~~~~~~~nl~i~~  211 (572)
                                 . ....+.+.....+.....+ .. ....+..+   +....+++....++      .....++|++|++
T Consensus       175 -----------~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  237 (379)
T d2f5va1         175 -----------I-RHNLVLNKLAEEYKGQRDF-QQ-IPLAATRR---SPTFVEWSSANTVFDLQNRPNTDAPEERFNLFP  237 (379)
T ss_dssp             -----------H-HHHHHHHHHHHHTTTSSCC-EE-CCEEEEEE---ETTEEEECCHHHHCCCCCEEETTEEEEEEEEEC
T ss_pred             -----------H-HhcCCCCCcccccccccCc-cc-ccchhccC---CCCCCCcCCCCcccchhhcchHHhcCCCCEEec
Confidence                       1 1122222222222111111 00 00011111   11111111111111      1224568999999


Q ss_pred             cceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcCCCC
Q psy10663        212 NSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGVGD  268 (572)
Q Consensus       212 ~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~  268 (572)
                      ++.|+||+++.++++|+||++.|. +|++++++|+ +||||||+++||+|||+||||+
T Consensus       238 ~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~-~vilaaGa~~tp~lL~~Sg~~~  294 (379)
T d2f5va1         238 AVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFGQ  294 (379)
T ss_dssp             SEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEE-EEEECSCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEece-EEEeccCccCCHHHHhhccccc
Confidence            999999999876789999999975 6888999995 9999999999999999999764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=4.1e-38  Score=322.90  Aligned_cols=243  Identities=14%  Similarity=0.082  Sum_probs=164.3

Q ss_pred             CccccccCCCCCeEEEEcccCCCCCCcc-ccccchhhhcCCCccceee--e----------------ecCCCcCCCCCCc
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDAPISTA-IPAMWHESIQDSKLDWGFV--L----------------ESNPSYGLGLKDN   61 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~~~~~~-~p~~~~~~~~~~~~~w~~~--~----------------~~~~~~~~~~~~~   61 (572)
                      ++|+||||+ |+||||||+|.+++.... .+.............|...  .                .+..........+
T Consensus        16 v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (367)
T d1n4wa1          16 VSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYD   94 (367)
T ss_dssp             HHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCCCCBCSEEEEECS
T ss_pred             HHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccccccCccccccCC
Confidence            479999986 999999999987532111 1110000000011112110  0                0000000012234


Q ss_pred             eeeeecCcccchhhhhccceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEE
Q psy10663         62 VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTIT  141 (572)
Q Consensus        62 ~~~~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~  141 (572)
                      .+.+.+|++|||+|++|+++++|+++.||+.|..   ..|.|++|+|||+++|+++.+....       .+       ..
T Consensus        95 ~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~~-------~~-------~~  157 (367)
T d1n4wa1          95 QMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHID-------TK-------WF  157 (367)
T ss_dssp             SCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCCC-------HH-------HH
T ss_pred             ccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCCC-------CC-------cc
Confidence            5678899999999999999999999999999963   2346889999999999998654210       00       00


Q ss_pred             ccCCccChHHHHHHHHHHHHcCCCCCCCCCC--------------CCcceeeccccccCCCeecchhHHhHhhhcCCCCe
Q psy10663        142 TIKTEKINLLRSTFSKAFEDIGFKSPDTFTV--------------SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTV  207 (572)
Q Consensus       142 ~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~--------------~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl  207 (572)
                      .... ..+ ..+.+.++++.+|+.....+..              ..+..++.|.. |..+.|+|+..+||+++.+++|+
T Consensus       158 ~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~~k~s~~~~yl~~a~~~gn~  234 (367)
T d1n4wa1         158 EDTE-WYK-FARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIY-GNNHGKQSLDKTYLAAALGTGKV  234 (367)
T ss_dssp             HHCG-GGH-HHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTT-CCSSSBCCTTTTHHHHHHHTTSE
T ss_pred             ccCC-CCh-HHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccc-cccccccChhHhhhHHHHhCCCe
Confidence            0111 335 6778888888888764311000              11222334433 45677999999999999999999


Q ss_pred             EEeccceEEEEEEeCCCCEEEEEEEEcCCCc---eeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        208 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGK---TIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       208 ~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~---~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      +|+++|+|++|++++++.++++|++.+.++.   +.+++|+ +||||||+|+||+|||+|+
T Consensus       235 ~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak-~VVLaAGai~Tp~LLl~S~  294 (367)
T d1n4wa1         235 TIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRAR  294 (367)
T ss_dssp             EEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecC-EEEEecchhcCHHHHHhCC
Confidence            9999999999999987778999999876553   4678995 8999999999999999995

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.70  E-value=3.4e-17  Score=148.17  Aligned_cols=171  Identities=15%  Similarity=0.053  Sum_probs=123.2

Q ss_pred             cccCCcccccEEEEeeCCC-CC------ccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC--CCCCeeEEeeccCC
Q psy10663        289 RLSLHPMFFGLSYTFTKTP-VS------SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK--GNPDVAVTQYYFPA  359 (572)
Q Consensus       289 nl~dH~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  359 (572)
                      ||||||.+. +.|..++.. ++      ......++.+|+.+++||++..+ .+..+|......  ..|++++++.+...
T Consensus         1 NLQDHp~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~Yl~~rtGpla~~~-~~~~~~~~~~~~d~~~p~~q~~~~~~~~   78 (181)
T d1kdga2           1 NAQDNPSIN-LVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGAS-PKLNFWRAYSGSDGFTRYAQGTVRPGAA   78 (181)
T ss_dssp             TBBCCCCEE-EEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCS-CCEEEEEEEECTTSCEEEEEEEEEESCS
T ss_pred             CCCCCCCee-EEEEECCcccHHHHHhhccCccHHHHHHHHhcCCcccccch-hhcccccccCCcccCCccceeecCceee
Confidence            899999995 888876533 11      11245567899999999998764 466777654432  25677777765431


Q ss_pred             CchhhhhhhhccccCchhHHHHHhhcCCCCCeEEEEEEecc-cCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHH
Q psy10663        360 QDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLC-PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAV  438 (572)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~  438 (572)
                      ...          +.         .+......+++.+..++ |.|||+|+|+|  |.+.|.|++||+.+|.|++.|++++
T Consensus        79 ~~~----------~~---------~~~~~~~~~~~~~~~l~~P~SRG~V~L~S--p~~~P~I~pnyLs~p~D~~~lv~~i  137 (181)
T d1kdga2          79 SVN----------SS---------LPYNASQIFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQAL  137 (181)
T ss_dssp             CCC----------CS---------SCCCGGGEEEEEEEECTTCCCCBEEEECT--TCCEEEEECCTTCSHHHHHHHHHHH
T ss_pred             ccC----------Cc---------cCCCCCCceEEEEeeccCCCCCCeEEeCC--CCCCCcccccccCCHHHHHHHHHHH
Confidence            110          00         01122345666666665 99999999986  5678999999999999999999999


Q ss_pred             HHHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCcccccc
Q psy10663        439 KMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGT  493 (572)
Q Consensus       439 ~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt  493 (572)
                      +.+++++++.++..+.       .|+    ...+++++.++++....+.+|++||
T Consensus       138 ~~~r~~~~~~p~~~~~-------~p~----~~~t~~~~~~~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         138 HDVVSNIGSIPGLTMI-------TPD----VTQTLEEYVDAYDPATMNSNHWVSS  181 (181)
T ss_dssp             HHHTTTGGGSTTCEEE-------ESC----TTSCHHHHHHHSCGGGGCCSCCBCT
T ss_pred             HHHHHHHcCCCCCccc-------cCC----CCCCHHHHHHHHHHhCCcccCCCCC
Confidence            9999999887665431       232    2368899999999988999999997

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.65  E-value=2e-16  Score=139.89  Aligned_cols=105  Identities=10%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             CCeEEEEEEecccCcceEEEec-CCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccccccc----
Q psy10663        389 KPILIIGLVSLCPKAEGVVEIN-SNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK----  463 (572)
Q Consensus       389 ~~~~~~~~~~~~p~s~g~v~l~-~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p----  463 (572)
                      ...+++...+++|.|||+|+|+ |+||.+.|.|++||+.++.|++.++++++.+++|+++.+|+++...++.+.-.    
T Consensus        60 ~~~~~i~~~l~~P~SrG~v~L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~  139 (170)
T d1ju2a2          60 STFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL  139 (170)
T ss_dssp             SCEEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBS
T ss_pred             CCeeEeecccCCccccceEEecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccccccc
Confidence            4456677788999999999996 89999999999999999999999999999999999999999887665531100    


Q ss_pred             ccccC-CCCCHHHHHHHHHhccCCCcccccc
Q psy10663        464 ECAKC-KYQSEEYYRCAIKYLSTTTNHPTGT  493 (572)
Q Consensus       464 ~~~~~-~~~~~~~~~~~~~~~~~~~~H~~Gt  493 (572)
                      +.+.. ..++|++|++|+|+.+.+.||.+|+
T Consensus       140 ~~p~p~~~~dde~l~~~iR~~~~T~yHyhgg  170 (170)
T d1ju2a2         140 GIPLPKDQTDDAAFETFCRESVASYWHYHGG  170 (170)
T ss_dssp             SSCCCSCTTCHHHHHHHHHHHCEECSCCEES
T ss_pred             cCCCccCCCCHHHHHHHHHhcCEeccCCCCc
Confidence            01111 2458899999999999999999996

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.58  E-value=1.9e-15  Score=137.67  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             CCeEEEEEEecccCcceEEEecCCCCCCCC-eeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Q psy10663        389 KPILIIGLVSLCPKAEGVVEINSNDPTKNP-TIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAK  467 (572)
Q Consensus       389 ~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P-~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~  467 (572)
                      ...+++..+.++|.|||+|+|+|+||...| .|++||+.++.|++.|+++++.+++|+++++|+.+...+.   .|++..
T Consensus        94 ~~~~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e~---~Pg~~~  170 (196)
T d1gpea2          94 EGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYNL  170 (196)
T ss_dssp             TTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---ESGGGS
T ss_pred             CCceEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhccccc---CCCccc
Confidence            456888888999999999999999998755 9999999999999999999999999999999998866554   466554


Q ss_pred             CCCCCHHHHHHHHHhccCCCcccccc
Q psy10663        468 CKYQSEEYYRCAIKYLSTTTNHPTGT  493 (572)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~H~~Gt  493 (572)
                      ....+|++|++|+|....+.+|++||
T Consensus       171 ~~~~sde~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         171 VQNATLSQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             CTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred             CCCCCHHHHHHHHHhcCeecccCCCC
Confidence            45568999999999999999999998

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.57  E-value=3.4e-15  Score=136.02  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=88.3

Q ss_pred             CeEEEEEEecccCcceEEEecCCCCC-CCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccC
Q psy10663        390 PILIIGLVSLCPKAEGVVEINSNDPT-KNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC  468 (572)
Q Consensus       390 ~~~~~~~~~~~p~s~g~v~l~~~d~~-~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~  468 (572)
                      ..+++.++.++|.|||+|+|+|+||+ +.|.|++||+.++.|++.|+++++++++|+++.+|+++...++   .|++...
T Consensus        95 ~~~~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e~---~Pg~~~~  171 (196)
T d1cf3a2          95 GVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---IPGDNLA  171 (196)
T ss_dssp             TEEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEEE---ESGGGSC
T ss_pred             CceeeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhcccccc---CCCcCCC
Confidence            45777788899999999999999997 6899999999999999999999999999999999999876654   3554434


Q ss_pred             CCCCHHHHHHHHHhccCCCcccccc
Q psy10663        469 KYQSEEYYRCAIKYLSTTTNHPTGT  493 (572)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~H~~Gt  493 (572)
                      ...++++|++|+|....+.+|++||
T Consensus       172 ~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         172 YDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             TTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             CchhHHHHHHHHHhcCeeccccCCC
Confidence            4567889999999999999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.50  E-value=1.7e-07  Score=90.78  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRIL  261 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LL  261 (572)
                      +.+.+++|+.++.|++|+.++ +++++||.+.+.++..++|+|+ .||||+|.+.. +.++
T Consensus       155 a~~~gv~i~~~~~v~~li~~~-~G~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         155 AVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNNERV  213 (308)
T ss_dssp             HHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHH
T ss_pred             HHhccceEEEeeccchhhhhc-ccccccccccccccceeEeecC-eEEEccCcccccHHHH
Confidence            456899999999999999875 4799999999878888999995 99999999875 4443

>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.46  E-value=8.2e-08  Score=85.86  Aligned_cols=55  Identities=9%  Similarity=-0.022  Sum_probs=46.3

Q ss_pred             EEEecccCcceEEEecC--CCCCCCCeeeCCCCCCHHHHHHHHH-HHHHHHHHhcCcc
Q psy10663        395 GLVSLCPKAEGVVEINS--NDPTKNPTIRYPLYTEEEDIKNILT-AVKMVDRVMKYRD  449 (572)
Q Consensus       395 ~~~~~~p~s~g~v~l~~--~d~~~~P~i~~~y~~~~~D~~~~~~-~~~~~~~i~~~~~  449 (572)
                      ...++.|..+|+|+|++  +|.+|+|+++++|.++++|++.+.. +.+.+.+++.+.+
T Consensus       119 ~~ge~~P~~~Nrv~l~~~~~D~~GiP~~~~~~~~~~ne~~~~~~~m~~~~~~~~~a~G  176 (198)
T d2f5va2         119 FFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIG  176 (198)
T ss_dssp             EEECCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTE
T ss_pred             EEecccCCCCCEEEeCCCCcCCCCCCeeEEEEecCccHHHHHHHHHHHHHHHHHHHcC
Confidence            45689999999999984  6999999999999999999988876 4567788876543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.33  E-value=5.3e-07  Score=87.85  Aligned_cols=54  Identities=28%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      +.+.+++|+.++.|++|+.++ +++++||.+.+.++..+.|+|+ .||||+|.+..
T Consensus       162 a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~Ak-~VIlAtGG~~~  215 (322)
T d1d4ca2         162 AVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAK  215 (322)
T ss_dssp             HHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEECS-EEEECCCCCTT
T ss_pred             HHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeCC-eEEEcCCCccc
Confidence            445799999999999999876 4799999999777888889995 99999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.05  E-value=9e-06  Score=78.69  Aligned_cols=58  Identities=24%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663        198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      |....++.+++++.++.|++|+.++ +++++||.+.+.++..+.++|+ .||||+|.+..
T Consensus       154 L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~  211 (317)
T d1qo8a2         154 LRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEE-EEEECCCCCTT
T ss_pred             HHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEecc-ceEEecccccc
Confidence            3333556799999999999998876 4799999999888888899995 99999999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.16  E-value=0.00092  Score=62.50  Aligned_cols=59  Identities=12%  Similarity=0.282  Sum_probs=41.1

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      .|...+...+++|+.++.|++|..++  +++ .|  ...+|   +++|+ .||+|||+ .|++||-.-|
T Consensus       155 ~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v-~V--~t~~g---~i~a~-~VViAaG~-~s~~l~~~lg  213 (281)
T d2gf3a1         155 AYRELAEARGAKVLTHTRVEDFDISP--DSV-KI--ETANG---SYTAD-KLIVSMGA-WNSKLLSKLN  213 (281)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECS--SCE-EE--EETTE---EEEEE-EEEECCGG-GHHHHGGGGT
T ss_pred             ccccccccccccccCCcEEEEEEEEC--CEE-EE--EECCc---EEEcC-EEEECCCC-cchhhHHhcC
Confidence            33344566899999999999999884  433 33  32344   57896 89999997 5677664433

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0013  Score=62.66  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcch
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~  256 (572)
                      ..+..+.+.++++|+.++.|++|+.+  +++++||.+.+ .+|+.+.+.|+ .||||+|.++
T Consensus       139 ~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~~g~~~~~~Ak-aVILATGG~g  197 (311)
T d1kf6a2         139 TLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG  197 (311)
T ss_dssp             HHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCG
T ss_pred             hHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcCCCcEEEEECC-EEEEcCCCcc
Confidence            45556677889999999999999988  58999998876 57888999995 8999999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.97  E-value=0.0039  Score=58.77  Aligned_cols=56  Identities=25%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG  265 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg  265 (572)
                      .+.+.+++|+.+++|++|+.+  ++++++|+..  +|   +++|+ .||+|||+ .|++|+-.-|
T Consensus       157 ~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~--~g---~i~a~-~VV~aaG~-~s~~l~~~~g  212 (305)
T d1pj5a2         157 RTESAGVTYRGSTTVTGIEQS--GGRVTGVQTA--DG---VIPAD-IVVSCAGF-WGAKIGAMIG  212 (305)
T ss_dssp             HHHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TE---EEECS-EEEECCGG-GHHHHHHTTT
T ss_pred             hhhcccccccCCceEEEEEEe--CCEEEEEecc--ce---eEECC-EEEEecch-hHHHHHHHcC
Confidence            345689999999999999998  6889999753  34   58996 89999997 5888887654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.93  E-value=0.013  Score=55.71  Aligned_cols=52  Identities=21%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcch
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~  256 (572)
                      ..+.+++|+.++.|++++.+  +++++|+.+.+ .+|+..++.|+ .||||+|.++
T Consensus       168 ~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak-~VvlATGG~~  220 (336)
T d2bs2a2         168 CLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYG  220 (336)
T ss_dssp             HHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCG
T ss_pred             HHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecC-eEEEeccccc
Confidence            45679999999999999998  57899998876 47999999994 9999999886

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.87  E-value=0.0066  Score=56.51  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ  262 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl  262 (572)
                      .++.+.+|++++.|++|..++  ++++ |.+. .+|+..++.|+ .||+|+++..+++||-
T Consensus       229 ~~~~g~~i~~~~~V~~I~~~~--~~~~-v~~~-~~~~~~~~~ad-~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         229 AASLGDAAHVGARVEGLARED--GGWR-LIIE-EHGRRAELSVA-QVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHHGGGEESSEEEEEEECC----CCE-EEEE-ETTEEEEEECS-EEEECSCHHHHHHHHT
T ss_pred             HHHhhcccccCCEEEEEEEeC--CeEE-EEEE-cCCeEEEEECC-EEEECCCHHHHHHhcc
Confidence            334478999999999998874  3333 4444 36777889997 8999999999999974

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.92  E-value=0.03  Score=50.57  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      +++.|++|+.+++|++|..+  ++++.+|...  +|+  +++|+ .||+|+|+.-.|++
T Consensus       120 ~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~--~g~--~i~a~-~vI~AtGg~S~p~~  171 (251)
T d2i0za1         120 LKDLGVKIRTNTPVETIEYE--NGQTKAVILQ--TGE--VLETN-HVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TCC--EEECS-CEEECCCCSSSGGG
T ss_pred             HHHcCCcccCCcEEEEEEEE--CCEEEEEEeC--CCC--eEecC-eEEEccCCcccccc
Confidence            45679999999999999998  4788888764  554  57896 89999999988864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.13  Score=40.91  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=45.7

Q ss_pred             HHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccC
Q psy10663        195 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAAN  253 (572)
Q Consensus       195 ~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAG  253 (572)
                      ..+...+.+.+|++|++++.|..|.-+  ++.+++|++.+. +|++.++.++ -|+++-|
T Consensus        69 ~~~~~~~~~~~~I~v~~~~~v~~i~G~--~~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          69 QVLQDKLRSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             cccccccccccceeEEcCcceEEEEcc--ccceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            345666667899999999999999776  457999999874 6888999997 7888766

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.12  E-value=0.076  Score=41.94  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      ++....+..++++++++.|++|+.+++ +++..+... ..+...++.++ .||+|.|
T Consensus        68 ~~~~~l~~~gI~v~~~~~v~~i~~~~~-~~~~~~~~~-~~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          68 YVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAM-TPNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEE-ETTEEEEEECS-CEEECCC
T ss_pred             hhhhhhhccccEEEcCCEEEEEEecCC-ceEEEEEEE-eCCCCEEEEcC-EEEEEEC
Confidence            444445667999999999999998763 567777665 45666789997 8999987

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.78  E-value=0.026  Score=51.81  Aligned_cols=57  Identities=21%  Similarity=0.177  Sum_probs=42.7

Q ss_pred             hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG  267 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG  267 (572)
                      .+.+.+++|+.++.|++|..+   +++++|+..  +|   +++|+ .||+|||+ .|++|+-..||.
T Consensus       160 ~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~--~g---~i~a~-~vV~AaG~-~s~~l~~~~G~~  216 (276)
T d1ryia1         160 AAKMLGAEIFEHTPVLHVERD---GEALFIKTP--SG---DVWAN-HVVVASGV-WSGMFFKQLGLN  216 (276)
T ss_dssp             HHHHTTCEEETTCCCCEEECS---SSSEEEEET--TE---EEEEE-EEEECCGG-GTHHHHHHTTCC
T ss_pred             HHHHcCCEEecceEEEeEEee---cceEEEecC--Ce---EEEcC-EEEECCCc-cHHHHHhhcCCC
Confidence            345678999999999999865   345677653  33   68896 89999997 578777766653

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.11  Score=48.26  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             hcCCCCeEEeccceEEEEEEeCC-----CCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663        201 IKDKNTVQVSKNSEVTKLCFDET-----KTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN  256 (572)
Q Consensus       201 ~~~~~nl~i~~~~~V~~i~~~~~-----~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~  256 (572)
                      ..++.+++++.++.+++|+.+++     .++++||.+.+. +|+.+.+.+ |.||||+|.++
T Consensus       147 ~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~a-k~VilAtGG~~  207 (305)
T d1chua2         147 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGAS  207 (305)
T ss_dssp             HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCG
T ss_pred             HHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEee-cceEEeeeccc
Confidence            34678999999999999999753     248999998754 677777888 49999999985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.65  E-value=0.085  Score=41.90  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=39.0

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEecc
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA  252 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaA  252 (572)
                      .++....++.+++|++++.|++|..+++ +..+.++.. .+|++.++.++ .|++||
T Consensus        70 ~~l~~~l~~~GI~i~~~~~v~~i~~~~~-~~~v~~~~~-~~g~~~~i~~D-~vLvAA  123 (123)
T d1dxla2          70 KQFQRSLEKQGMKFKLKTKVVGVDTSGD-GVKLTVEPS-AGGEQTIIEAD-VVLVSA  123 (123)
T ss_dssp             HHHHHHHHHSSCCEECSEEEEEEECSSS-SEEEEEEES-SSCCCEEEEES-EEECCC
T ss_pred             hhhhhhhhcccceEEcCCceEEEEEccC-eEEEEEEEC-CCCeEEEEEcC-EEEEcC
Confidence            3444445667899999999999987653 444344443 46777889997 899887

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.08  E-value=0.35  Score=38.54  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             chhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEec
Q psy10663        192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLA  251 (572)
Q Consensus       192 s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILa  251 (572)
                      .+...++..+.+.+|++|+.++.|.+|.=+...+.+.+|++.+. +|+..++.++ -|+++
T Consensus        70 ra~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~d-GvFVa  129 (130)
T d1vdca2          70 RASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFA  129 (130)
T ss_dssp             CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEEC
T ss_pred             ccchhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECC-EEEEE
Confidence            33445677777889999999999999987754457889999874 7888889887 56554

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.93  E-value=0.17  Score=40.12  Aligned_cols=54  Identities=13%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      .++....+..++++++++.|+++..+++ +  .-|.+.+.+|+..++.++ .|++|+|
T Consensus        71 ~~l~~~l~~~gv~~~~~~~v~~v~~~~~-g--~~v~~~~~~g~~~~i~~D-~vl~A~G  124 (125)
T d1ojta2          71 KVWQKQNEYRFDNIMVNTKTVAVEPKED-G--VYVTFEGANAPKEPQRYD-AVLVAAG  124 (125)
T ss_dssp             HHHHHHHGGGEEEEECSCEEEEEEEETT-E--EEEEEESSSCCSSCEEES-CEEECCC
T ss_pred             HHHHHHHHHcCcccccCcEEEEEEEcCC-c--EEEEEEeCCCCeEEEEcC-EEEEecC
Confidence            4455545678999999999999988753 2  246666667777789997 8999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.90  E-value=0.11  Score=41.95  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      .++....+..|+++++++.|++|....++.+++.|...  +|+  ++.++ .||+|.|
T Consensus        81 ~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--~G~--~i~~D-~vi~a~G  133 (133)
T d1q1ra2          81 AFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--DGT--RLPAD-LVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET--TSC--EEECS-EEEECCC
T ss_pred             hhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECC--CCC--EEECC-EEEEeeC
Confidence            34544456689999999999999887666788888775  666  47787 8999987

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=90.44  E-value=0.18  Score=44.65  Aligned_cols=49  Identities=22%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV  258 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp  258 (572)
                      ...+|++|+ ...|..|+++  ++++.||...  +|.  .++|+ .|||++|++-.-
T Consensus        78 ~~~~nL~i~-q~~V~dli~e--~~~v~gV~t~--~G~--~~~Ak-aVILtTGTFL~G  126 (230)
T d2cula1          78 EGLRPLHLF-QATATGLLLE--GNRVVGVRTW--EGP--PARGE-KVVLAVGSFLGA  126 (230)
T ss_dssp             HTCTTEEEE-ECCEEEEEEE--TTEEEEEEET--TSC--CEECS-EEEECCTTCSSC
T ss_pred             hhhcCHHHH-hccceeeEec--ccceeeEEec--ccc--EEEEe-EEEEccCcceee
Confidence            467899998 5568888888  5799999875  666  56885 899999998443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.88  E-value=0.12  Score=45.73  Aligned_cols=46  Identities=11%  Similarity=0.118  Sum_probs=36.1

Q ss_pred             hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEec
Q psy10663        200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLA  251 (572)
Q Consensus       200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILa  251 (572)
                      ...++.|.+|++++.|++|.++++++++++|..   +|+  +++|+ .||.+
T Consensus       244 ~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad-~VI~~  289 (297)
T d2bcgg1         244 RLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT---KLG--TFKAP-LVIAD  289 (297)
T ss_dssp             HHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE---TTE--EEECS-CEEEC
T ss_pred             HHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEc---CCE--EEECC-EEEEC
Confidence            334567999999999999999887789988852   564  68896 67764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.40  E-value=0.12  Score=46.59  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI  260 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L  260 (572)
                      .|...+++.+++|++++.|+.|...+++..+..+.-.  ++  .+++|+ .||||+|+.-.|++
T Consensus       114 ~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~--~~--~~~~a~-~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV--NS--TQWQCK-NLIVATGGLSMPGL  172 (253)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE--TT--EEEEES-EEEECCCCSSCGGG
T ss_pred             HHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec--CC--EEEEeC-EEEEcCCccccccc
Confidence            3433345678999999999999987654444444322  44  367896 89999999988886

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.22  E-value=0.27  Score=38.53  Aligned_cols=52  Identities=13%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      ++....++.|++++++++|++|..+++  . ..|.+.+ .+...++.++ .||+|.|
T Consensus        68 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~-v~v~~~~-~~~~~~~~~D-~vlvAvG  119 (119)
T d3lada2          68 EAQKILTKQGLKILLGARVTGTEVKNK--Q-VTVKFVD-AEGEKSQAFD-KLIVAVG  119 (119)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSS--C-EEEEEES-SSEEEEEEES-EEEECSC
T ss_pred             HHHHHHHhcCceeecCcEEEEEEEeCC--E-EEEEEEE-CCCCEEEECC-EEEEeeC
Confidence            444445568999999999999988743  2 3356663 3445678897 8999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.39  Score=44.96  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=42.5

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEE-EEcCCCceeEeeccceeEeccCcchh
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVE-FRNPQGKTIKVNANREVVLAANSINS  257 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~-~~~~~g~~~~v~A~k~VILaAGai~T  257 (572)
                      ..+.+++++.++.+..++.+++ ++++++. +...+|+...+.|+ .||||+|.+..
T Consensus       153 ~~~~~v~~~~~~~~~~l~~~~~-~~~~g~~~~~~~~g~~~~~~a~-~vIlAtGG~~~  207 (330)
T d1neka2         153 NLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKAR-ATVLATGGAGR  207 (330)
T ss_dssp             HHHTTCEEECSEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEES-CEEECCCCCGG
T ss_pred             HHhcCCeEEEEEEEEEeeeecc-ccceeeeeEEccCCcEEEEecc-EEEEcCCCccc
Confidence            4567999999999999988764 5566654 44457888999995 89999998853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.26  E-value=0.67  Score=36.27  Aligned_cols=86  Identities=9%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHcCCCCC--CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEE
Q psy10663        151 LRSTFSKAFEDIGFKSP--DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVT  228 (572)
Q Consensus       151 ~~~~~~~a~~~~G~~~~--~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~  228 (572)
                      ..-.|...+.++|....  .. ...-...+         ..   ....++....++.+++|+++++|+++..+++ +..+
T Consensus        34 ig~E~A~~l~~lG~~Vtii~~-~~~~l~~~---------d~---ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v   99 (122)
T d1v59a2          34 IGLEMGSVYSRLGSKVTVVEF-QPQIGASM---------DG---EVAKATQKFLKKQGLDFKLSTKVISAKRNDD-KNVV   99 (122)
T ss_dssp             HHHHHHHHHHHTTCEEEEECS-SSSSSSSS---------CH---HHHHHHHHHHHHTTCEEECSEEEEEEEEETT-TTEE
T ss_pred             hHHHHHHHHHhhCcceeEEEe-ccccchhh---------hh---hhHHHHHHHHHhccceEEeCCEEEEEEEeCC-CcEE
Confidence            66677788888887653  22 11100000         00   1123444445567999999999999998864 4455


Q ss_pred             EEEEEcC-CCceeEeeccceeEec
Q psy10663        229 GVEFRNP-QGKTIKVNANREVVLA  251 (572)
Q Consensus       229 gV~~~~~-~g~~~~v~A~k~VILa  251 (572)
                      .|.+.+. .++..++.++ .|++|
T Consensus       100 ~~~~~~~~~~~~~~ie~D-~vlvA  122 (122)
T d1v59a2         100 EIVVEDTKTNKQENLEAE-VLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEES-EEEEC
T ss_pred             EEEEEeCCCCCeEEEEeC-EEEEC
Confidence            6666543 4677889997 67765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.41  E-value=0.58  Score=36.24  Aligned_cols=51  Identities=22%  Similarity=0.278  Sum_probs=37.4

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEec
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLA  251 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILa  251 (572)
                      .++....++.+++|++++.|++|.-++  +.+ -|.+. .+|+..++.++ .||+|
T Consensus        67 ~~l~~~l~~~GI~i~~~~~v~~i~~~~--~~~-~v~~~-~~g~~~~i~~D-~Vlvs  117 (117)
T d1ebda2          67 AIIKKRLKKKGVEVVTNALAKGAEERE--DGV-TVTYE-ANGETKTIDAD-YVLVT  117 (117)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEEET--TEE-EEEEE-ETTEEEEEEES-EEEEC
T ss_pred             HHHHHHHHhcCCEEEcCCEEEEEEEcC--CEE-EEEEE-eCCCEEEEEeE-EEEEC
Confidence            444444566899999999999998774  322 34444 57888999997 78876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.10  E-value=0.11  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             CccccccCCCCCeEEEEcccCCC
Q psy10663          1 CLTAKLLAQSGCSVLILEAGPDA   23 (572)
Q Consensus         1 v~A~rLae~~g~~VLvLEaG~~~   23 (572)
                      ++|++||++ |++|||||+....
T Consensus        19 ~~A~~La~~-G~~V~vlE~~~~~   40 (297)
T d2bcgg1          19 ILSGLLSVD-GKKVLHIDKQDHY   40 (297)
T ss_dssp             HHHHHHHHT-TCCEEEECSSSSS
T ss_pred             HHHHHHHHC-CCCEEEEcCCCCC
Confidence            479999976 9999999997654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.58  E-value=0.6  Score=36.14  Aligned_cols=51  Identities=20%  Similarity=0.218  Sum_probs=36.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      .++....+..+++|++++.|++|..+++ + ...|..  .+|+  ++.++ .||+|+|
T Consensus        66 ~~~~~~l~~~GI~v~~~~~v~~i~~~~~-g-~~~v~~--~~g~--~i~~D-~Vi~a~G  116 (117)
T d1feca2          66 KQLTEQLRANGINVRTHENPAKVTKNAD-G-TRHVVF--ESGA--EADYD-VVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHTTEEEEETCCEEEEEECTT-S-CEEEEE--TTSC--EEEES-EEEECSC
T ss_pred             HHHHHHHhhCcEEEEcCCEEEEEEECCC-C-EEEEEE--CCCC--EEEcC-EEEEecC
Confidence            4444445667999999999999987654 3 334544  3676  46787 8999988

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=82.37  E-value=0.46  Score=43.89  Aligned_cols=48  Identities=25%  Similarity=0.275  Sum_probs=36.3

Q ss_pred             cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      .++.+.+|++++.|++|..++  ++++ |.+.+.++...++.|+ .||+|++
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~--~~v~-v~~~~~~~~~~~~~aD-~VI~A~p  292 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQND--QKVT-VVYETLSKETPSVTAD-YVIVCTT  292 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECS--SCEE-EEEECSSSCCCEEEES-EEEECSC
T ss_pred             HHhcCCccccCceEEEEEEeC--CeEE-EEEEecCCCeEEEEee-EEEecCC
Confidence            345678999999999999884  4443 4455556777888997 8999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.93  E-value=1.3  Score=35.31  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=36.6

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN  253 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG  253 (572)
                      .++....+..+++++.++.|++|..+  ++++ .|.+  .+|+  ++.++ .||+|+|
T Consensus        87 ~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~~-~v~l--~~G~--~i~aD-~Vi~A~G  136 (137)
T d1m6ia2          87 NWTMEKVRREGVKVMPNAIVQSVGVS--SGKL-LIKL--KDGR--KVETD-HIVAAVG  136 (137)
T ss_dssp             HHHHHHHHTTTCEEECSCCEEEEEEE--TTEE-EEEE--TTSC--EEEES-EEEECCC
T ss_pred             HHHHHHHHhCCcEEEeCCEEEEEEec--CCEE-EEEE--CCCC--EEECC-EEEEeec
Confidence            34545456789999999999999877  3433 2444  3675  67887 8999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=0.82  Score=35.86  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCc----eeEeeccceeEeccC
Q psy10663        196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK----TIKVNANREVVLAAN  253 (572)
Q Consensus       196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~----~~~v~A~k~VILaAG  253 (572)
                      .++....++.+++|++++.|++|.-++++-++..+..  ..|+    ...+.++ .||+|.|
T Consensus        67 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~--~~g~~~~~~~~~~~D-~vl~a~G  125 (125)
T d3grsa2          67 TNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTA--VPGRLPVMTMIPDVD-CLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEEC--CTTSCCEEEEEEEES-EEEECSC
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEc--cCCcCcCccccccCC-EEEEEeC
Confidence            4454445678999999999999988754333433322  2343    3456787 8999987