Psyllid ID: psy106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | 2.2.26 [Sep-21-2011] | |||||||
| Q55EH8 | 701 | ABC transporter G family | yes | N/A | 0.707 | 0.323 | 0.393 | 2e-41 | |
| Q8T674 | 730 | ABC transporter G family | no | N/A | 0.753 | 0.331 | 0.383 | 2e-41 | |
| P72335 | 304 | Nod factor export ATP-bin | N/A | N/A | 0.660 | 0.697 | 0.347 | 8e-31 | |
| Q39GT7 | 304 | Nod factor export ATP-bin | yes | N/A | 0.654 | 0.690 | 0.364 | 8e-31 | |
| Q1BWI2 | 304 | Nod factor export ATP-bin | yes | N/A | 0.654 | 0.690 | 0.351 | 2e-29 | |
| Q2SVP3 | 304 | Nod factor export ATP-bin | no | N/A | 0.654 | 0.690 | 0.333 | 6e-29 | |
| Q3JSQ0 | 304 | Nod factor export ATP-bin | no | N/A | 0.654 | 0.690 | 0.333 | 1e-28 | |
| Q62K72 | 304 | Nod factor export ATP-bin | no | N/A | 0.654 | 0.690 | 0.333 | 1e-28 | |
| Q63TX3 | 304 | Nod factor export ATP-bin | no | N/A | 0.654 | 0.690 | 0.333 | 1e-28 | |
| P37624 | 911 | Uncharacterized ABC trans | N/A | N/A | 0.647 | 0.228 | 0.316 | 4e-28 |
| >sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 12/239 (5%)
Query: 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
+ D I + N + + + V++KL T+ K TI SL+G+SG GKTT+L I G+
Sbjct: 1 MGDNIVINLNNVSRSYGNV--KVIEKLNFTINKGTINSLIGSSGSGKTTILKTILGKLKQ 58
Query: 63 NGGNIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113
+ G + + S +G+ PQ + LY E TI+E + ++ I+ M + +K
Sbjct: 59 DDGIVQVFGKEPCGKGSEIPGSSVGYAPQDVCLYNEITIEETLSFFASIHRMPKDEYIKK 118
Query: 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+ L +L L + LSGGQQRRVSLA L+H P+LLILDEPT G+ P+++ +IW
Sbjct: 119 RDSLVEILELPSLSKIISELSGGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWE 178
Query: 174 HLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
HL++L ++ G TI+ITTHY+ E + I L+R G +LE PP LL KY LEDV+
Sbjct: 179 HLIFLTKNFGVTIIITTHYLQECRSCDNIFLLRNGRILESGPPNYLLSKYECSLLEDVY 237
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 146/253 (57%), Gaps = 11/253 (4%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
K AI ++N + + + V+D L + ++ TI L+GASG GKTT+L I G+ + + G
Sbjct: 12 KLAISLKNVCRGYGNT--KVIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPDSG 69
Query: 66 NI--------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
+ + GF PQ+ +LY + T+D + ++ ++ + + + K +
Sbjct: 70 EVLVFGKRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNEI 129
Query: 118 QALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
LL L R G LSGGQ++RVSLA+ LLH P+LLILDEPT GID +A IW++L
Sbjct: 130 IKLLDLPQINSRSVGLLSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLR 189
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSS 236
LA SG TI+ITTHYI+EA S + L+R G +LE P L+E+Y ++LE+VFL L
Sbjct: 190 SLANSGVTIIITTHYINEAVGSDNVFLLRDGKILENGAPNYLIERYESQTLEEVFLKLCK 249
Query: 237 KQQHDRIEQRRKS 249
+ I +K+
Sbjct: 250 RDNAQSIVDSKKN 262
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P72335|NODI_RHIS3 Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 18/230 (7%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
K AI + K KL V++ L TV + LLG +G GK+T+ + G V + G
Sbjct: 3 KVAIDLAGVKKSFGDKL--VVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAG 60
Query: 66 NIHL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
I + S ++K +G +PQ +L EFT+ E + +G +GMS ++IKE +
Sbjct: 61 KITVLGEPVGARSRLARKSIGVVPQFDNLDQEFTVRENLLVFGRYFGMSTRKIKE---VI 117
Query: 118 QALLHLNHFKRKC----GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+LL + K G LSGG +RR++LA L++DP+LL++DEPT+G+DP IW
Sbjct: 118 PSLLEFARLESKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWE 177
Query: 174 HLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222
L +L G+TI++TTH+++EA++ + ++ G L E P L+E++
Sbjct: 178 RLRFLLARGKTIILTTHFMEEAERLCDRLCVLEHGRKLAEGSPHALIEEH 227
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Rhizobium sp. (strain N33) (taxid: 103798) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q39GT7|NODI_BURS3 Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain 383) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N KR KL V++ L TVQ Y LLG +G GKTT L + G + G I
Sbjct: 6 IDFRNVEKRFGDKL--VVNGLSFTVQAGECYGLLGPNGAGKTTTLKMLLGLTHPDAGTIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + +G +GMS Q + L
Sbjct: 64 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGMSAQAAHALVKPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L N K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TILITTH+++EA++ + ++ +G + E P L+E
Sbjct: 184 ARGKTILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia sp. (strain 383) (taxid: 269483) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1BWI2|NODI_BURCA Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N KR+ KL V++ L +V+ Y LLG +G GKTT L + G + G I
Sbjct: 6 IDFRNVEKRYGDKL--VVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAGTIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + + +GMS Q + L
Sbjct: 64 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFSRYFGMSAQAARALVAPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L N K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TILITTH+++EA++ + ++ +G + E P L+E
Sbjct: 184 ARGKTILITTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia cenocepacia (strain AU 1054) (taxid: 331271) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q2SVP3|NODI_BURTA Nod factor export ATP-binding protein I OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I + KR+ KL V+D L VQ + LLG +G GKTT L + G + G+I
Sbjct: 6 IDFQQVEKRYDDKL--VVDGLSFHVQPGECFGLLGPNGAGKTTALKMLLGITHPDAGSIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + + +G++ + + L
Sbjct: 64 LCGEPVPSRARHARRRVGVVPQFDNLDPDFTVRENLLVFARYFGLAAHEARALVPPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L N K G LSGG +RR++LA L+++P++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLENKADAKVGELSGGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ H + ++ +G + E P+ L+E
Sbjct: 184 VRGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRTLIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q3JSQ0|NODI_BURP1 Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain 1710b) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I + KR+ KL V+D L VQ + LLG +G GKTT L + G + G+I
Sbjct: 6 IDFQQVEKRYDDKL--VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + + +G++ + L
Sbjct: 64 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ H + ++ +G + E P++L+E
Sbjct: 184 ARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia pseudomallei (strain 1710b) (taxid: 320372) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q62K72|NODI_BURMA Nod factor export ATP-binding protein I OS=Burkholderia mallei (strain ATCC 23344) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I + KR+ KL V+D L VQ + LLG +G GKTT L + G + G+I
Sbjct: 6 IDFQQVEKRYDDKL--VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + + +G++ + L
Sbjct: 64 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ H + ++ +G + E P++L+E
Sbjct: 184 ARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia mallei (strain ATCC 23344) (taxid: 243160) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q63TX3|NODI_BURPS Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain K96243) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 12/222 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I + KR+ KL V+D L VQ + LLG +G GKTT L + G + G+I
Sbjct: 6 IDFQQVEKRYDDKL--VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSIS 63
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
L + +++++G +PQ +L P+FT+ E + + +G++ + L
Sbjct: 64 LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEF 123
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 124 AKLESKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 183
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ H + ++ +G + E P++L+E
Sbjct: 184 ARGKTILLTTHFMEEAERLCHRLCVIEEGRKIAEGAPRMLIE 225
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia pseudomallei (strain K96243) (taxid: 272560) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P37624|YHIH_ECOLI Uncharacterized ABC transporter ATP-binding protein YhiH OS=Escherichia coli (strain K12) GN=yhiH PE=3 SV=3 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 10/218 (4%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
+D + + + I+ LG++GCGK+T + +TG + G L I ++++
Sbjct: 291 AVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRR 350
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-SLSG 135
+G+M Q SLY E T+ + + + ++ + +I + + LN + SL
Sbjct: 351 VGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPL 410
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITTHYIDE 194
G ++R+SLA+ ++H PE+LILDEPTSG+DPV + W ++ L+ + TI I+TH+++E
Sbjct: 411 GIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNE 470
Query: 195 AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
A++ I LM G +L P+ L+EK SLE+ F+
Sbjct: 471 AERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI 508
|
Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| 193620315 | 760 | PREDICTED: ABC transporter G family memb | 0.769 | 0.325 | 0.521 | 2e-64 | |
| 193664711 | 686 | PREDICTED: ABC transporter G family memb | 0.763 | 0.357 | 0.522 | 5e-64 | |
| 322789827 | 809 | hypothetical protein SINV_01380 [Solenop | 0.719 | 0.285 | 0.539 | 2e-63 | |
| 157109209 | 872 | abc transporter [Aedes aegypti] gi|10887 | 0.719 | 0.264 | 0.526 | 4e-63 | |
| 91090452 | 756 | PREDICTED: similar to AGAP002638-PA [Tri | 0.753 | 0.320 | 0.519 | 4e-63 | |
| 328783515 | 788 | PREDICTED: ABC transporter G family memb | 0.809 | 0.329 | 0.480 | 5e-63 | |
| 170035865 | 806 | abc transporter [Culex quinquefasciatus] | 0.719 | 0.286 | 0.526 | 8e-63 | |
| 345496012 | 768 | PREDICTED: ABC transporter G family memb | 0.719 | 0.300 | 0.530 | 8e-63 | |
| 332027462 | 763 | ABC transporter G family member 20 [Acro | 0.719 | 0.302 | 0.530 | 1e-62 | |
| 328718628 | 781 | PREDICTED: ABC transporter G family memb | 0.728 | 0.299 | 0.516 | 2e-62 |
| >gi|193620315|ref|XP_001945213.1| PREDICTED: ABC transporter G family member 23-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 176/261 (67%), Gaps = 14/261 (5%)
Query: 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V AYK++ SS +LD L MTV K IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 30 AVCVRRAYKKYGQSSNPHVILDGLNMTVPKGCIYGLLGASGCGKTTLLSCIVGRRRLNAG 89
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S ++G+MPQ+I+LY EFTI E + ++G++ GM+ +Q+ +K E+
Sbjct: 90 EIWVLGGKPGSAGSGVPGPRIGYMPQEIALYGEFTIRETMQFFGMVNGMTPKQVDDKIEF 149
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A LLH+PELLILDEPT G+DPV+ + IW+HL+
Sbjct: 150 LLKFLMLPSASRPVKNLSGGQQRRVSFAAALLHNPELLILDEPTVGVDPVLRQGIWDHLV 209
Query: 177 YLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+L + G TI++TTHYIDE +++HMIGLMR G L E P LL+KYN +SLEDVFL LS
Sbjct: 210 HLTKDGGTTIIVTTHYIDETRQAHMIGLMRGGKFLAEESPTSLLQKYNCQSLEDVFLKLS 269
Query: 236 SKQQHDRIEQRRKSFLWPIQA 256
Q +R ++RR S L I A
Sbjct: 270 VIQ--NRGKRRRSSILHDITA 288
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193664711|ref|XP_001950287.1| PREDICTED: ABC transporter G family member 23-like isoform 1 [Acyrthosiphon pisum] gi|328718609|ref|XP_003246529.1| PREDICTED: ABC transporter G family member 23-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/249 (52%), Positives = 171/249 (68%), Gaps = 4/249 (1%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+++ +AYK ++S VL+ M V+K TIY LLG SGCGKTTLLSCI G+ L+ G+I
Sbjct: 19 AVKITDAYKAYNSA-AVVLNGFNMNVEKGTIYGLLGPSGCGKTTLLSCIIGRGRLDSGHI 77
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
LS+ KK++G+MPQ ++LY EF I E Y+G +Y MS + I +K E L L+ + K
Sbjct: 78 QLSVKKKKEIGYMPQDLALYDEFNILETFHYFGSLYEMSYEDIIDKGEKLINLMEMPPAK 137
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
+ GS+SGGQQRR SL LLHDP LLILDEPT G+DP+I+ IW +L L G+TI+I
Sbjct: 138 TQFGSMSGGQQRRFSLCTALLHDPSLLILDEPTVGLDPIISASIWEYLQDLTNRGKTIII 197
Query: 188 TTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHD--RIE- 244
TTHYI+EA+ ++ IGLMRKGILL E+PP ++ N +LE FL+LS KQ D IE
Sbjct: 198 TTHYIEEARLANTIGLMRKGILLSEAPPLEIMASCNADTLESAFLILSQKQTSDTETIEP 257
Query: 245 QRRKSFLWP 253
R+KS L P
Sbjct: 258 PRKKSTLQP 266
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322789827|gb|EFZ14974.1| hypothetical protein SINV_01380 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 169/243 (69%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRH-SSKLP-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K + SSK P +VL L MTV K +IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 74 AVSVRHAFKIYGSSKNPNHVLQNLSMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSG 133
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EFTI E + Y+G I+GM +I E+ +
Sbjct: 134 EIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMGTAEIVERLRF 193
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 194 LLQFLDLPSQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 253
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + G +T++ITTHYI+EA+++H IGLMR G LL E P+ LL+ YN SLEDVFL LS
Sbjct: 254 QITKDGNKTVIITTHYIEEARQAHTIGLMRSGRLLAEEAPRTLLQMYNCASLEDVFLKLS 313
Query: 236 SKQ 238
KQ
Sbjct: 314 RKQ 316
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157109209|ref|XP_001650571.1| abc transporter [Aedes aegypti] gi|108879087|gb|EAT43312.1| AAEL005249-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 168/243 (69%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRHSSKLP--YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K++ +K VL L MTV K TIY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 139 AVSVRHAFKQYGTKKKPNQVLSNLNMTVAKGTIYGLLGASGCGKTTLLSCIVGRKRLNSG 198
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EF+I E + Y+G I+GM +IKE+ ++
Sbjct: 199 EIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIRETMMYFGWIFGMQTSEIKERLQF 258
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 259 LLNFLDLPSESRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 318
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
++ ++G +T++ITTHYI+EA+++H IGLMR G LL E P LL Y SLEDVFL LS
Sbjct: 319 HITKAGQKTVIITTHYIEEARQAHTIGLMRSGRLLAEESPACLLSMYRCSSLEDVFLKLS 378
Query: 236 SKQ 238
KQ
Sbjct: 379 RKQ 381
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090452|ref|XP_967359.1| PREDICTED: similar to AGAP002638-PA [Tribolium castaneum] gi|270013849|gb|EFA10297.1| hypothetical protein TcasGA2_TC012512 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/256 (51%), Positives = 175/256 (68%), Gaps = 14/256 (5%)
Query: 8 AIRVENAYKRHSSKL-PYV-LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V AYKR+ +K PYV LD L MTV K IY LLGASGCGKTTLL+CI G+ LN G
Sbjct: 29 AVCVRRAYKRYGTKSNPYVILDGLNMTVPKGAIYGLLGASGCGKTTLLNCIVGRKRLNSG 88
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S ++G+MPQ+I+LY EFTI E + Y+G I GM+ QQ+++K +
Sbjct: 89 EIWVLGGTPGSRGSGVPGPRVGYMPQEIALYGEFTIRETLKYFGWISGMTTQQVEDKLGF 148
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L + L L R +LSGGQQRRVSLA TL+H+PELLILDEPT G+DP++ + IWNHL+
Sbjct: 149 LVSFLMLPDADRLVKNLSGGQQRRVSLAATLIHEPELLILDEPTVGVDPLLRQNIWNHLV 208
Query: 177 YLAESGR-TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + GR T++ITTHYIDE +++H+IGLMR G L E P+ L+ ++ +SLEDVFL LS
Sbjct: 209 EITKHGRTTVIITTHYIDETRQAHLIGLMRGGYFLAEESPERLISQFGAESLEDVFLKLS 268
Query: 236 SKQQHDRIEQRRKSFL 251
Q + +RR S L
Sbjct: 269 VIQNMGK--RRRSSIL 282
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328783515|ref|XP_393164.4| PREDICTED: ABC transporter G family member 20-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 181/279 (64%), Gaps = 19/279 (6%)
Query: 8 AIRVENAYKRH-SSKLP-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V NA+K + SS+ P ++L L MTV K +IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 66 AVCVRNAFKTYGSSRNPNHILQNLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRKLNAG 125
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S +++G+MPQ+I+LY EF+I E + Y+G I+ M +I E+ ++
Sbjct: 126 EIWVLGGKPGTKGSGVPGRRVGYMPQEIALYGEFSIKETMIYFGWIFEMDTAEIMERLQF 185
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 186 LLKFLDLPSQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 245
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + G +T++ITTHYI+EA+++H IGLMR G LL E P+ LL YN SLEDVFL LS
Sbjct: 246 QITKDGNKTVIITTHYIEEARQAHTIGLMRTGRLLAEESPRTLLTMYNCTSLEDVFLKLS 305
Query: 236 SKQQHDRIEQRRKSFLW-----PIQAIQEHTRYLANFLP 269
+Q ++ Q+ S W P+ +E NF P
Sbjct: 306 --RQEVQVTQQPASLNWNKKSEPVYVTEESGVVGLNFSP 342
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170035865|ref|XP_001845787.1| abc transporter [Culex quinquefasciatus] gi|167878311|gb|EDS41694.1| abc transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 168/243 (69%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRHSSKLP--YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K++ SK VL L MTV K TIY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 66 AVSVRHAFKQYGSKKKPNQVLSNLNMTVAKGTIYGLLGASGCGKTTLLSCIVGRKRLNQG 125
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EF+I E + Y+G I+GM +I+E+ ++
Sbjct: 126 EIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIRETMMYFGWIFGMQTTEIRERLQF 185
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 186 LLNFLDLPSETRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 245
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
++ ++G +T++ITTHYI+EA+++H IGLMR G LL E P LL Y SLEDVFL LS
Sbjct: 246 HITKAGQKTVIITTHYIEEARQAHTIGLMRSGRLLAEESPACLLSMYRCSSLEDVFLKLS 305
Query: 236 SKQ 238
KQ
Sbjct: 306 RKQ 308
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345496012|ref|XP_001604973.2| PREDICTED: ABC transporter G family member 20-like isoform 1 [Nasonia vitripennis] gi|345496014|ref|XP_003427623.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 170/243 (69%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRH-SSKLP-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K + SSK P +V+ L MTV K +IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 35 AVSVRHAFKTYGSSKNPNHVIQNLNMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSG 94
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EFTI E + Y+G I+GM +I E+ ++
Sbjct: 95 EIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMCTSEIVERLKF 154
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 155 LLQFLDLPSQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 214
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + G +T++ITTHYI+EA+++H IGLMR G LL E P+ LL+ YN +LEDVFL LS
Sbjct: 215 QITKDGNKTVIITTHYIEEARQAHTIGLMRSGRLLAEESPRALLQMYNCPTLEDVFLKLS 274
Query: 236 SKQ 238
KQ
Sbjct: 275 RKQ 277
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027462|gb|EGI67545.1| ABC transporter G family member 20 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 169/243 (69%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRH-SSKLP-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K + SSK P +V+ L MTV K +IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 28 AVSVRHAFKIYGSSKNPNHVIQNLSMTVAKGSIYGLLGASGCGKTTLLSCIVGRRRLNSG 87
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EFTI E + Y+G I+GM +I E+ +
Sbjct: 88 EIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFTIRETMMYFGWIFGMCTAEIVERLRF 147
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 148 LLQFLDLPSQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 207
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + G +T++ITTHYI+EA+++H IGLMR G LL E P+ LL+ YN SLE+VFL LS
Sbjct: 208 QITKDGNKTVIITTHYIEEARQAHTIGLMRSGRLLAEEAPRTLLQMYNCASLEEVFLKLS 267
Query: 236 SKQ 238
KQ
Sbjct: 268 RKQ 270
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328718628|ref|XP_003246532.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Acyrthosiphon pisum] gi|328718630|ref|XP_003246533.1| PREDICTED: ABC transporter G family member 20-like isoform 3 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 170/246 (69%), Gaps = 12/246 (4%)
Query: 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V +A+K + +SK +VL L MTV K TIY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 58 AVCVRHAFKHYGSTSKPNHVLSNLNMTVAKGTIYGLLGASGCGKTTLLSCIVGRRRLNTG 117
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S K++G+MPQ+I+LY EF+I E + Y+G I+GM +I ++ ++
Sbjct: 118 QIFVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETSEINDRLQF 177
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L L R +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNHL+
Sbjct: 178 LLNFLDLPSQSRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV 237
Query: 177 YLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + G +T++ITTHYI+EA+++H IGLMR G LL E P+ LL Y+ +SLE+VFL LS
Sbjct: 238 QITKDGHKTVIITTHYIEEARQAHTIGLMRSGRLLAEESPRALLSMYHCQSLEEVFLKLS 297
Query: 236 SKQQHD 241
KQ D
Sbjct: 298 RKQGTD 303
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| FB|FBgn0039594 | 808 | CG9990 [Drosophila melanogaste | 0.725 | 0.288 | 0.510 | 7.6e-72 | |
| FB|FBgn0053970 | 777 | CG33970 [Drosophila melanogast | 0.744 | 0.307 | 0.515 | 1.1e-70 | |
| FB|FBgn0031734 | 711 | CG11147 [Drosophila melanogast | 0.741 | 0.334 | 0.474 | 2.9e-66 | |
| ZFIN|ZDB-GENE-050517-42 | 705 | abch1 "ATP-binding cassette, s | 0.669 | 0.304 | 0.439 | 9.8e-55 | |
| DICTYBASE|DDB_G0267430 | 730 | abcG20 "ABC transporter G fami | 0.753 | 0.331 | 0.387 | 6.2e-47 | |
| DICTYBASE|DDB_G0269026 | 701 | abcG23 "ABC transporter G fami | 0.710 | 0.325 | 0.395 | 2.1e-43 | |
| TIGR_CMR|BA_2541 | 222 | BA_2541 "ABC transporter, ATP- | 0.651 | 0.941 | 0.384 | 1.5e-35 | |
| TIGR_CMR|CPS_1249 | 323 | CPS_1249 "ABC transporter, ATP | 0.682 | 0.678 | 0.352 | 7.4e-34 | |
| UNIPROTKB|O33189 | 255 | Rv1687c "PROBABLE CONSERVED AT | 0.635 | 0.8 | 0.366 | 2.9e-32 | |
| TIGR_CMR|CHY_0872 | 261 | CHY_0872 "ABC transporter, ATP | 0.694 | 0.854 | 0.329 | 1.4e-30 |
| FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 125/245 (51%), Positives = 169/245 (68%)
Query: 6 KCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
+ A+ V +A+K + K VL+ L MTV K TIY LLGASGCGKTTLLSCI G+ ++
Sbjct: 71 QAAVSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMD 130
Query: 64 GGNIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
G I + S K++G+MPQ+I+LY EF+I E + Y+G I+GM ++I E+
Sbjct: 131 AGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERL 190
Query: 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
++L L L KR +LSGGQQRRVS A+ L+HDPELLILDEPT G+DP++ + IWNH
Sbjct: 191 QFLLNFLDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH 250
Query: 175 LLYLAESG-RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLL 233
L+++ ++G +T++ITTHYI+EA+++H IGLMR G LL E P VLL Y SLE+VFL
Sbjct: 251 LVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLK 310
Query: 234 LSSKQ 238
LS Q
Sbjct: 311 LSRIQ 315
|
|
| FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 131/254 (51%), Positives = 175/254 (68%)
Query: 8 AIRVENAYKRH-SSKLP-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V A+K + SSK P VLD L MTV K +IY LLGASGCGKTTLLSCI G+ LN G
Sbjct: 47 AVCVRRAHKMYGSSKNPNVVLDGLNMTVPKGSIYGLLGASGCGKTTLLSCIVGRRRLNSG 106
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
I + S ++G+MPQ+I+LY EFT+ E + Y+G+I MS I+++ E+
Sbjct: 107 EIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFGIISAMSKGDIEDRTEF 166
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L LL+L + + +LSGGQQRRVSLA+ LLH+PELLILDEPT G+DPV+ + IW+HL+
Sbjct: 167 LLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHEPELLILDEPTVGVDPVLRQSIWDHLV 226
Query: 177 YLAESGRT-ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ ++G T ++ITTHYIDE ++HMIGL+R G +L E P L ++YN SLEDVFL LS
Sbjct: 227 DITKNGHTTVIITTHYIDECAQAHMIGLLRGGKMLAEESPDYLRQQYNADSLEDVFLKLS 286
Query: 236 SKQQHDRIEQRRKS 249
Q + +RR+S
Sbjct: 287 VLQN---MGKRRRS 297
|
|
| FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 119/251 (47%), Positives = 168/251 (66%)
Query: 8 AIRVENAYKRHSSKL-P-YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
A+ V N YK + SK P VL++L M V + +IY LLGASGCGKTTLLSCI GQ LNGG
Sbjct: 3 AVEVRNGYKYYGSKSNPKIVLNQLNMNVMRGSIYGLLGASGCGKTTLLSCIVGQRRLNGG 62
Query: 66 NIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ + S ++GFMPQ+I+L E T+ E I Y+G IYG++ ++I+EK +
Sbjct: 63 EVVVLGAKPGEPGSGVPGSRVGFMPQEIALVEEMTVKETIFYFGRIYGLTDERIREKFKL 122
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L+ LL L ++ SGGQQRR+S A ++HDPELLILDEPT G+DP++ E+IW+ L+
Sbjct: 123 LKELLQLPPARQMIKQCSGGQQRRLSFACAMIHDPELLILDEPTVGLDPMLREKIWDFLV 182
Query: 177 YLAESGR-TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235
+ + ++ITTHYI+EAK+++ IGLMR G+LL E P ++ K+ +S+ED FL+LS
Sbjct: 183 ETTRNSKLAVIITTHYIEEAKQANCIGLMRNGVLLAEDTPTNIMIKFGTQSIEDAFLILS 242
Query: 236 SKQ-QHDRIEQ 245
+Q D + Q
Sbjct: 243 QRQGNEDELAQ 253
|
|
| ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 9.8e-55, Sum P(2) = 9.8e-55
Identities = 101/230 (43%), Positives = 147/230 (63%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74
R KL VL+ L +T+ + IY LLG SGCGKTTLL CI G ++ G H+++ K
Sbjct: 27 RSYGKLK-VLNNLNLTLPQGQIYGLLGPSGCGKTTLLKCIVGTLKISRG--HITVLGKPP 83
Query: 75 ---------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
K +G+MPQ I+LY EFTI + ++G I+G+S ++ + + +L L L
Sbjct: 84 AFPGHEVPGKMVGYMPQDIALYNEFTISNTLWFFGRIHGLSSKETEARMSFLIDFLDLPQ 143
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-T 184
+LSGGQ+RRVSL LL +P+LLILDEPT G+DPV+ +IW HL+ + G+ +
Sbjct: 144 KHSLVKNLSGGQRRRVSLGAALLQNPKLLILDEPTVGVDPVLRAKIWQHLVEIVRGGQVS 203
Query: 185 ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
I+ITTHYI+EA++++ +GLMR G LL E PP +++++N +LE FL L
Sbjct: 204 IIITTHYIEEARQANTVGLMRNGRLLAEGPPDAVMKQHNAATLETAFLQL 253
|
|
| DICTYBASE|DDB_G0267430 abcG20 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 6.2e-47, Sum P(2) = 6.2e-47
Identities = 98/253 (38%), Positives = 147/253 (58%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
K AI ++N + + + V+D L + ++ TI L+GASG GKTT+L I G+ + + G
Sbjct: 12 KLAISLKNVCRGYGNTK--VIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPDSG 69
Query: 66 NI-------H-LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
+ H + GF PQ+ +LY + T+D + ++ ++ + + + K +
Sbjct: 70 EVLVFGKRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNEI 129
Query: 118 QALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
LL L R G LSGGQ++RVSLA+ LLH P+LLILDEPT GID +A IW++L
Sbjct: 130 IKLLDLPQINSRSVGLLSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLR 189
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSS 236
LA SG TI+ITTHYI+EA S + L+R G +LE P L+E+Y ++LE+VFL L
Sbjct: 190 SLANSGVTIIITTHYINEAVGSDNVFLLRDGKILENGAPNYLIERYESQTLEEVFLKLCK 249
Query: 237 KQQHDRIEQRRKS 249
+ I +K+
Sbjct: 250 RDNAQSIVDSKKN 262
|
|
| DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 95/240 (39%), Positives = 139/240 (57%)
Query: 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64
D I + N + + + V++KL T+ K TI SL+G+SG GKTT+L I G+ +
Sbjct: 3 DNIVINLNNVSRSYGNVK--VIEKLNFTINKGTINSLIGSSGSGKTTILKTILGKLKQDD 60
Query: 65 GNIHL---------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
G + + S +G+ PQ + LY E TI+E + ++ I+ M + +K +
Sbjct: 61 GIVQVFGKEPCGKGSEIPGSSVGYAPQDVCLYNEITIEETLSFFASIHRMPKDEYIKKRD 120
Query: 116 YLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L +L L + LSGGQQRRVSLA L+H P+LLILDEPT G+ P+++ +IW HL
Sbjct: 121 SLVEILELPSLSKIISELSGGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHL 180
Query: 176 LYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
++L ++ G TI+ITTHY+ E + I L+R G +LE PP LL KY LEDV+ L
Sbjct: 181 IFLTKNFGVTIIITTHYLQECRSCDNIFLLRNGRILESGPPNYLLSKYECSLLEDVYYKL 240
|
|
| TIGR_CMR|BA_2541 BA_2541 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 83/216 (38%), Positives = 131/216 (60%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSKKQLG 78
+L L + V+K+ I+ L+G SG GKTTL+ I G N G + + ++ K++G
Sbjct: 1 MLHNLSLQVEKAEIFGLVGPSGSGKTTLIKLIAGINEATEGEVLVYNTNMPNLNEMKRIG 60
Query: 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQ 137
+M Q +LY E + E + +YG+ + KE+ E + L+ L+ H K++ SGG
Sbjct: 61 YMAQADALYEELSAYENADFMATMYGLKGKHKKERIEKVFDLVQLSQHMKKQVQHFSGGM 120
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
++R+SLAI LLH+PE+LILDEPT GIDP++ + IW L + G TI++TTH +DEA+
Sbjct: 121 KKRLSLAIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKKKGTTIIVTTHIMDEAEF 180
Query: 198 SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLL 233
+GL+R+G L+ + L ++ + +EDVFLL
Sbjct: 181 CERLGLIREGKLVATGTTEELKKRVSSGRIEDVFLL 216
|
|
| TIGR_CMR|CPS_1249 CPS_1249 "ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 81/230 (35%), Positives = 129/230 (56%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI +N R+ +L + L +TV+K TIY LG +G GKTT + +TG G I
Sbjct: 19 AINAKNLC-RNFGQLA-AISNLDLTVEKQTIYGFLGPNGSGKTTAIRLLTGLLKPTSGQI 76
Query: 68 -----HLSITSKK---QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
HL + K Q+G+M Q+ SLY + T+ E + + IYG++ + K + L +
Sbjct: 77 SVLDCHLPQEANKLRLQIGYMTQKFSLYDDLTVKENLQFISKIYGLTANEQKSRLSELLS 136
Query: 120 LLHLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L ++ GS+SGGQ++R++LA ++H P+LL LDEPTS +DP E W L L
Sbjct: 137 THQLTQQSQQLAGSMSGGQKQRLALAAAVIHKPKLLFLDEPTSAVDPQNRREFWEQLFDL 196
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228
+ G TIL++THY+DEA++ H + ++ G+ + P+ L+ + +E
Sbjct: 197 CDQGTTILVSTHYMDEAERCHKLAILENGVKRADDTPQALMNNMAAQVVE 246
|
|
| UNIPROTKB|O33189 Rv1687c "PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 78/213 (36%), Positives = 125/213 (58%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSKKQLGF 79
L + + V TI LLG SG GKTTL+ CI G ++ G++ + S + ++G+
Sbjct: 33 LQDVSVRVACGTITGLLGPSGSGKTTLIRCIVGSQIIASGSVSVLGQPAGSAELRHRVGY 92
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR 139
MPQ ++Y + + + I Y+ + G+ Q E ++A+ +H +C +LSGGQ+
Sbjct: 93 MPQDPTIYNDLRVIDNIRYFAELCGVDRQAADE---VIEAVDLRDHRTARCANLSGGQRA 149
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199
RVSLA L+ P+LL+LDEPT G+DPV+ E+W+ LA G T+L+++H +DEA +
Sbjct: 150 RVSLACALVGRPDLLVLDEPTIGLDPVLRVELWDRFTALARRGTTLLVSSHVMDEADRCG 209
Query: 200 MIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ L+R+G LL + P L ++ SLE+ FL
Sbjct: 210 DLLLLRQGQLLAHTTPHRLRKETGCTSLEEAFL 242
|
|
| TIGR_CMR|CHY_0872 CHY_0872 "ABC transporter, ATP binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 77/234 (32%), Positives = 128/234 (54%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI E K K+ +D + TV I+ LLG +G GK+T + + G + G
Sbjct: 4 AILTEKLTKTFGPKV--AVDNVSFTVPAGKIFGLLGPNGSGKSTTIRMLCGALLPTSGRA 61
Query: 68 H---LSITSKKQ-----LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L + K + +G+M Q+ SLY + T++E + ++G IY + + +K + E +
Sbjct: 62 EIFGLDVVKKTREVRNLIGYMSQRFSLYEDLTVEENLDFFGRIYNLPAKLLKSRKEEILL 121
Query: 120 LLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ L ++ K LSGG ++R++L ++H P+LLILDEPT+G+DPV W + L
Sbjct: 122 MAGLTDNRKTLTAHLSGGWKQRLALGAAMIHRPKLLILDEPTAGVDPVSRRIFWEIIKKL 181
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+G ++L+TTHY+DEA+ ++G + G L+ P L+ + SLEDVF+
Sbjct: 182 CATGISVLVTTHYMDEAEICDIVGFIFNGKLVSFGTPAELMAQEGKGSLEDVFI 235
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q1BWI2 | NODI_BURCA | 3, ., 6, ., 3, ., - | 0.3513 | 0.6542 | 0.6907 | yes | N/A |
| Q39GT7 | NODI_BURS3 | 3, ., 6, ., 3, ., - | 0.3648 | 0.6542 | 0.6907 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 321 | |||
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-59 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-53 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-47 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-41 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-40 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-39 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-39 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-39 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 9e-39 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-38 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-37 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-36 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-34 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-34 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-33 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-33 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-32 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-32 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-31 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-31 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-31 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-30 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-30 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-30 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-30 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-30 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-30 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-29 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-29 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-29 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-28 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-28 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-28 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-28 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-27 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-27 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-27 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-27 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-26 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-26 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-26 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-25 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-25 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-25 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-25 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-25 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-25 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-25 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-25 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-25 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-24 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-24 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-24 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-23 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-23 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-23 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-23 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-23 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-23 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-22 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-22 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-22 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-22 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-22 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-22 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-21 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-21 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-21 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-21 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-21 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-21 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-20 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-20 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-20 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-20 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-19 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-19 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-19 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-19 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-19 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-19 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-19 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-19 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-19 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-18 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-18 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-18 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-18 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-18 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 9e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-17 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-17 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-17 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-17 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-17 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-17 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-16 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-16 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-16 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-16 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-16 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-15 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-15 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-15 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-15 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-15 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-15 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-15 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-15 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-15 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-14 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-14 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-14 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-14 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-13 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-13 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-11 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-11 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-11 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-11 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-11 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-08 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 1e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 9e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 7e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 9e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 1e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 9e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 2e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 6e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.004 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-59
Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 12/229 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V N K++ LD + V+ I+ LLG +G GKTTLL + G G I
Sbjct: 4 VIEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ ++++G++PQ+ SLYPE T+ E + ++ +YG+S ++ +E+ E L
Sbjct: 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L L +K +LSGG ++R+S+A+ LLHDPELLILDEPTSG+DP EIW L L
Sbjct: 123 LFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182
Query: 179 AESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225
A+ G TIL++TH ++EA++ + ++ G ++ E P+ L EK+ K
Sbjct: 183 AKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
|
Length = 293 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 9e-53
Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+++ N K + +D L + V K I+ LLG +G GKTT L +TG+ G +
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 69 L---SITS-----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ SI + ++ LG+ PQ +L+ E T+ E + +Y + G+ +IKE+ E L +
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L ++ +LSGG +R++SLAI L+ P +L+LDEPTSG+DP IW+ +L +
Sbjct: 121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
GR+I++TTH +DEA+ I +M G L P+ L
Sbjct: 181 -KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-47
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 46/210 (21%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V N KR+ K LD + +TV+K IY LLG +G GKTTL+ I G + G I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ K+++G++P++ SLY T+ E +
Sbjct: 59 VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL------------------------ 94
Query: 121 LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
LSGG ++R++LA LLHDPELLILDEPTSG+DP E W L L +
Sbjct: 95 -----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGIL 209
G+TIL+++H ++EA++ + ++ G +
Sbjct: 144 EGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-41
Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 18/207 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL---LSCIT----GQNVLNGGNIHLSITS----- 73
+D + V++ ++ LG +G GKTT L+ + G + G +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG----YDVVREPRKV 64
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGS 132
++ +G +PQ S+ + T E + G +YG+ + +E+AE L L L R G+
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
SGG +RR+ +A +L+H P++L LDEPT+G+DP IW+++ L E G TIL+TTHY+
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 193 DEAKK-SHMIGLMRKGILLEESPPKVL 218
+EA K I ++ G ++ E P+ L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 5e-40
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ ++ K + S LD L +TV+ +LLG SGCGKTTLL I G + G I
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
+ +T ++ +G + Q +L+P T+ E I + GL + G+ +I+ + L L
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF-GLKLRGVPKAEIRARVRELLEL 117
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YL 178
+ L R LSGGQQ+RV+LA L +P LL+LDEP S +D + EE+ L
Sbjct: 118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211
E G T + TH +EA + I +M +G +++
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 5e-39
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------- 57
I ++N Y K+ L + ++++K +++G SG GK+TLL+ +
Sbjct: 1 IELKNLSKTYGGGGEKVQ-ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 58 -----GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
G ++ L+ ++ +GF+ Q +L P+ T E + L+ G+ ++ +E
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 113 KAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+AE L + L LSGGQQ+RV++A L +DP++++ DEPT +D +E+
Sbjct: 120 RAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 172 WNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKG 207
L L E+G TI++ TH + A+ + I +R G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-39
Identities = 69/214 (32%), Positives = 122/214 (57%), Gaps = 14/214 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+++EN KR+ K LD + +T+ +Y LLG +G GKTTL+ + + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 69 L---SITSKKQ-----LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ + + Q +G++PQ+ +YP FT+ E + Y + G+ +++K + + + L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117
Query: 121 LHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
++L K+K GSLSGG +RRV +A L+ DP +LI+DEPT+G+DP N L L
Sbjct: 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177
Query: 180 ESGRTILITTHYIDEAKKS-HMIGLMRKGILLEE 212
E R ++++TH +++ + + + ++ KG L+ E
Sbjct: 178 E-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 6e-39
Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 18/224 (8%)
Query: 8 AIRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I ++N K + L + + ++ +++G SG GK+TLL+ + +G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 59 QNVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
+ ++NG ++ L+ +K++GF+ Q +L P+ T+ E + LI G S + K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 113 KAEYLQALLHLNHF--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
AE L +L L K+K LSGGQQ+RV++A L+++P++++ DEPT +D A+E
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 171 IWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213
+ L L E G+TI++ TH + AK + + ++ G + EE
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEE 224
|
Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 7e-39
Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 9 IRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I + KR K +D + TV+ + LLG +G GKTT L + G + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 67 IHLS--------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+ ++++LGF+ LY T E + Y+ +YG+ ++ + E L
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L + R+ G S G +++V++A L+HDP +L+LDEPT+G+D + + +
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 178 LAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
L G+ IL +TH + E ++ + ++ +G ++ E
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 9e-39
Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN KR LD + +V+K I+ LLG +G GKTT + I G + + G +
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 69 -----LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123
L I ++ ++G++P++ LYP+ + + + Y + G+ ++ + + + L L
Sbjct: 59 FDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL 118
Query: 124 -NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ ++ LS G Q++V ++HDPELLILDEP SG+DPV E + + + LA +G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 183 RTILITTHYIDEAKK-SHMIGLMRKG 207
+T++++TH ++ ++ + L+ KG
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 5e-38
Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 17/227 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I ++N K K VL + ++V+K + ++G SG GK+TLL C+ +G
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 62 LNGGNIHLSITSKK---QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEY 116
++G ++ K ++G + QQ +L+P T+ E + + +S + +EKA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALE 119
Query: 117 LQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L + L + LSGGQQ+RV++A L DP++++ DEPTS +DP + E+ + +
Sbjct: 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
LAE G T++I TH + A++ + + M +G ++EE PP+ +
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 7e-38
Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 12/223 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I N KR+ KL V+D L VQ+ + LLG +G GKTT L + G + G+I
Sbjct: 7 PIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L + +++++G +PQ +L P+FT+ E + +G +G+S + L
Sbjct: 65 SLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE 124
Query: 120 LLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L N K G LSGG +RR++LA L++DP++L+LDEPT+G+DP +W L L
Sbjct: 125 FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G+TIL+TTH+++EA++ + ++ +G + E P L+E
Sbjct: 185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-37
Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 19/201 (9%)
Query: 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH- 68
++N + LD + +T++K ++G +G GK+TLL + G G +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 69 ----LSITSKKQL----GFMPQQISLYPE--F---TIDEMICYYGLIYGMSLQQIKEKAE 115
L+ S K+L G + Q P+ F T++E + + G+ ++I+E+ E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVE 116
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L+ L R +LSGGQ++RV++A L DP++L+LDEPT+G+DP E+
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 175 LLYLAESGRTILITTHYIDEA 195
L L G+TI+I TH +D
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLL 197
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 8e-37
Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 16/225 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN KR+ +K +D + +T+++ L+G SG GKTT L I +G+ +
Sbjct: 2 IEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 62 LNGGNI--HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I + ++++G++ QQI L+P T+ E I + G ++IK++A+ L
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 120 LLHLN--HFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L+ L+ + R LSGGQQ+RV +A L DP +L++DEP +DP+ +++ +
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 177 YL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
L E G+TI+ TH IDEA K + I +M G +++ P +L
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-36
Identities = 66/196 (33%), Positives = 109/196 (55%), Gaps = 10/196 (5%)
Query: 9 IRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+ V N K + L+ + ++V++ +L+G SGCGK+TLL I G G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 67 IHL---SITSK-KQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALL 121
+ + +T G++ QQ +L P T+ + + GL + G+ + +E+AE L L+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL-GLELQGVPKAEARERAEELLELV 119
Query: 122 HLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-A 179
L+ F+ LSGG ++RV+LA L DP++L+LDEP S +D + E++ LL +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179
Query: 180 ESGRTILITTHYIDEA 195
E+G+T+L+ TH IDEA
Sbjct: 180 ETGKTVLLVTHDIDEA 195
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 5e-36
Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I VEN K++ + + V++ I+ LLG +G GKTT + +T G
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ ++++G + Q +S+ E T E + + +YG+ + +E+ + L
Sbjct: 59 VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF 118
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L R + SGG +RR+ +A +L+H PE+L LDEPT G+DP +W ++ L
Sbjct: 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
E G TIL+TTHY++EA++ + ++ G ++ E P+ L
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-35
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ ++N K S VL + + ++ LLG SGCGK+TLL I G G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 68 HLS---IT----SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQA 119
+ +T K+ + + Q +LYP T+ E I +GL + G+ +I ++ + +
Sbjct: 61 LIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI-AFGLKLRGVPKAEIDKRVKEVAK 119
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LL L H RK LSGGQ++RV+LA L+ P++ +LDEP S +D + + + + L
Sbjct: 120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179
Query: 179 AES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222
E G T + TH EA + I +M G + + P L E+
Sbjct: 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225
|
Length = 338 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-35
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 19/232 (8%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
K A+ + N K +D + + ++K +LLG SGCGKTTLL I G +
Sbjct: 1 MPKPALEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 64 GGNIHL---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL--QQIKEKA 114
G I L IT K+ +G + Q +L+P T++E + +GL L +IK +
Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARV 117
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
E L+ L F RK LSGGQQ+RV+LA L+ +P++L+LDEP S +D + E++
Sbjct: 118 EEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177
Query: 174 HLLYLA-ESGRTILITTHYIDEAKKSHM---IGLMRKGILLEESPPKVLLEK 221
L L E G T + TH +EA M I +M G + + P+ + E+
Sbjct: 178 ELKELQRELGITFVYVTHDQEEA--LAMSDRIAVMNDGRIEQVGTPEEIYER 227
|
Length = 352 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-34
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 15/220 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ +E K VL+ + ++V+K ++LG SGCGK+TLL I G G +
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 68 HLS---ITS-KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLH 122
L +T +G++ Q+ +L P T+ + + GL + G S + +E+A+ L L+
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV-ALGLELRGKSKAEARERAKELLELVG 119
Query: 123 LNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AE 180
L F + LSGG ++RV++A L P+LL+LDEP +D + EE+ + LL L E
Sbjct: 120 LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 181 SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ +T+L+ TH +DEA + L + ++L P ++ E
Sbjct: 180 TRKTVLLVTHDVDEA-----VYLADRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-34
Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 9/207 (4%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ +E K K +D + V I+ LLG +G GKTT I G G I
Sbjct: 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 68 H-----LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-LQALL 121
LS K ++G++P++ LYP+ T+++ + Y + GM +I++K + L+ L
Sbjct: 60 TWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE 119
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ +K LS G Q+++ ++H+PELLILDEP SG+DPV E + + + L E
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKG 207
G TI+ ++H ++ ++ + +++KG
Sbjct: 180 GATIIFSSHRMEHVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-33
Identities = 64/237 (27%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+ V + K + SK+ V D + ++ I LLG +G GKTTLL I + + G +
Sbjct: 2 LEVTDLTKSYGSKVQAVRD-VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 68 --HLSITS-----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ ++++G + + LY T E + Y+ + G+S ++IK + L
Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR 120
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L + R+ G S G +++V++A L+HDP +L+LDEPTSG+D + + + L
Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 180 ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
GR ++ ++H + E + +I ++ KG ++ E + L + +++LE++F
Sbjct: 181 NEGRAVIFSSHIMQEVEALCDRVI-VLHKGEVVLEGSIEALDARTVLRNLEEIFAFA 236
|
Length = 245 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-33
Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 18/227 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI + K + K V++ L TV + LLG +G GK+T+ I G + G I
Sbjct: 41 AIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + ++ ++G +PQ +L EFT+ E + +G +GMS ++I+ + +
Sbjct: 99 TVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA---VIPS 155
Query: 120 LLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + K + LSGG +RR++LA L++DP+LLILDEPT+G+DP IW L
Sbjct: 156 LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+TIL+TTH+++EA++ + ++ G + E P L+++
Sbjct: 216 RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-32
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++ + K + K VLD + + V+K IY LG +G GKTT + I G + G I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 69 LSITSKKQLGFMPQQI-------SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
S ++ ++I YP T E + + G+ ++I E + + L
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV--GL 116
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ K+K S G ++R+ +A+ LL +P+LLILDEPT+G+DP +E+ +L L +
Sbjct: 117 K-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
G T+LI++H + E +K + IG++ KG L+EE
Sbjct: 176 GITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-32
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 18/227 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI + K + K+ V++ L T+ + + LLG +G GK+T+ + G + G I
Sbjct: 4 AIDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + ++ +G +PQ +L PEFT+ E + +G +GMS ++I+ + +
Sbjct: 62 TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA---VIPS 118
Query: 120 LLHLNHFKRKC----GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
LL + K LSGG +RR++LA L++DP+LLILDEPT+G+DP IW L
Sbjct: 119 LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+TIL+TTH+++EA++ + ++ G + E P L+++
Sbjct: 179 RSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-31
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 48/212 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+ ++N KR+ K VL+ + + ++ I +LLG SG GK+TLL CI G + G+I
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 68 ----------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
++++G + Q +L+P T+ E I
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------- 99
Query: 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
LSGGQQ+RV+LA L DP++L+LDEPTS +DP+ E+ L
Sbjct: 100 --------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
Query: 178 L-AESGRTILITTHYIDEAKK-SHMIGLMRKG 207
L A+ G T+++ TH +DEA + + + ++R G
Sbjct: 146 LQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
+ VEN + K +LD L ++ K I +LG +G GK+TLL C+ G G
Sbjct: 1 MMLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 67 IHL------SITSK---KQLGFMPQQISLYPEFTIDEMICY----YGLIYGMSLQQIKEK 113
+ L S++ K K+L ++PQ S T+ E++ + ++G ++ +E
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 114 AEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
E LL L H R LSGG+++RV +A L + +L+LDEPTS +D E+
Sbjct: 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178
Query: 173 NHLLYLA-ESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230
L L E G T+++ H ++ A + + + L++ G ++ + P+ +L + ++L +V
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV 235
Query: 231 F 231
+
Sbjct: 236 Y 236
|
Length = 258 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-31
Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I ++N +K +VL + +TV+K + ++G SG GK+TLL CI + G I
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 69 L---SITSKK--------QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAE 115
+ +T K ++G + QQ +L+P T+ E I I GMS + +E+A
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAEERAL 117
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L LSGGQQ+RV++A L +P++++ DEPTS +DP + E+ +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 175 LLYLAESGRTILITTHYIDEAKK 197
+ LAE G T+++ TH + A++
Sbjct: 178 MKDLAEEGMTMVVVTHEMGFARE 200
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-31
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 14/224 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN K + + LD + + +++ ++LLG SGCGKTTLL I G G I
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
L IT+ K+ + + Q +L+P T+ E I + GL + + +IKE+ L
Sbjct: 59 LDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAF-GLRLKKLPKAEIKERVAEALDL 117
Query: 121 LHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L + RK LSGGQQ+RV++A L+++P++L+LDEP +D + +++ L L
Sbjct: 118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177
Query: 179 AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEK 221
E G T + TH +EA S I +M KG + + P+ + E+
Sbjct: 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 9e-31
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 13/178 (7%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----SITSKKQLGFM 80
VL+ + V+ +++G +G GK+TLL I G G+I + +K++G++
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYV 73
Query: 81 PQQISLYPEFTID-----EMICYYGLIYGMSLQQIKEKAEYLQAL--LHLNHF-KRKCGS 132
PQ+ S+ +F I M Y L + +KA+ +AL + L+ R+ G
Sbjct: 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK-ADKAKVDEALERVGLSELADRQIGE 132
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQQ+RV LA L+ DP+LL+LDEP +G+DP E+I+ L L G TIL+ TH
Sbjct: 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 12/237 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V R+ ++ LD + TV+ +LLG +G GK+TL S +T V G I
Sbjct: 1 ALEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 68 HL---SITSKK-----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + +LG + QQ +L + ++ + + Y+ ++G+S + + + L A
Sbjct: 59 SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118
Query: 120 LLHLNHFKR-KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L L K L+GG +RRV +A LLH P LL+LDEPT G+DP I H+ L
Sbjct: 119 RLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRAL 178
Query: 179 A-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
A + G ++L TH +DE + + ++ +G +L + L LE FL L
Sbjct: 179 ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----Q 76
LD + +V+ I+ L+G +G GKTTL + I+G G++ IT +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 77 LG----FMPQQISLYPEFTIDE--MI--------CYYGLIYGMSLQQIKEKAEYLQALLH 122
LG F Q L+PE T+ E M+ ++ +E+AE L +
Sbjct: 75 LGIGRTF--QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG 132
Query: 123 LNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
L R G LS GQQRR+ +A L DP+LL+LDEP +G++P EE+ + L E
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 182 GRTILITTHYID 193
G T+L+ H +D
Sbjct: 193 GITVLLVEHDMD 204
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-30
Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 18/206 (8%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH------LSITSKKQLGF 79
V++ I+ ++G SG GK+TLL CI G+ +++G +I L +K++
Sbjct: 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106
Query: 80 MPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQ 137
+ Q +L P T+ E + + GL + G+ + +E+A L+ L ++ + LSGG
Sbjct: 107 VFQSFALLPHRTVLENVAF-GLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGM 165
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAK 196
Q+RV LA L DP++L++DE S +DP+I E+ + LL L AE +TI+ TH +DEA
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225
Query: 197 K-SHMIGLMRKGILLEESPPKVLLEK 221
+ I +M+ G L++ P+ +L
Sbjct: 226 RLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-30
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN KR+ V + L + + K L+G SG GKTT + I +G+
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 62 LNGGNIHL--SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I + ++++G++ QQI L+P T++E I + ++I+E+A+ L A
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119
Query: 120 LLHL--NHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L+ L F R LSGGQQ+RV +A L DP LL++DEP +DP+ +++
Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 177 YL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLL 219
L E G+TI+ TH IDEA + + I +M+ G +++ P +L
Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-30
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 25/214 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQ----- 76
+L + +TV + I +LLG +G GKTTLL I G G+I IT
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 77 --LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
+G++P+ ++PE T++E L+ G ++ ++ L+ + L F K
Sbjct: 75 AGIGYVPEGRRIFPELTVEE-----NLLLGAYARRRAKRKARLERVYEL--FPRLKERRK 127
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
+ G+LSGG+Q+ +++A L+ P+LL+LDEP+ G+ P I EEI+ + L + G TIL+
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
A + + ++ +G ++ E LL
Sbjct: 188 VEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-30
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
LD + +T++ I +L+G +G GK+TLL I G G I
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-------- 57
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
+ I+ P + I Y LSGG
Sbjct: 58 --IDGKDIAKLPLEELRRRIGY-------------------------------VPQLSGG 84
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196
Q++RV+LA LL +P+LL+LDEPTSG+DP E + L LAE GRT++I TH + A+
Sbjct: 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144
Query: 197 K-SHMIGLMRKG 207
+ + +++ G
Sbjct: 145 LAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-30
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 13/197 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
+R EN KR+ + V++ + ++V++ I LLG +G GKTT I G + G I
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 68 --HLSIT-------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
IT ++ +G++PQ+ S++ + T++E I I G+S ++ +EK E L
Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
H+ H K K SLSGG++RRV +A L +P+ L+LDEP +G+DP+ ++I +
Sbjct: 119 EEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 178 LAESGRTILITTHYIDE 194
L + G +LIT H + E
Sbjct: 179 LKDRGIGVLITDHNVRE 195
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-30
Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I EN R+ + L + + ++K L+G +G GK+TLL + G G +
Sbjct: 3 MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 68 ---HLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLIYGMSLQQIKEKAEY 116
L +S+K L + Q++ L P+ F T+++ + + G+ ++I+E+
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 117 LQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ L R +LSGGQ++RV++A L PE+L+LDEPT+G+DP E+ L
Sbjct: 122 ALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 176 LYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
L E G+TI+I TH ++ + ++ ++ G +L + P + + + L
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVV-VLDDGKILADGDPAEIFN--DAELLLA 235
|
Length = 235 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-29
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 29/240 (12%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQ 59
A+ VE+ +KR+ VL + + + S++G+SG GK+T L CI G
Sbjct: 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 60 NVLNGGNI--------HLSITSKKQ-------LGFMPQQISLYPEFTIDEMICYYGL-IY 103
+NG I L K+Q LG + Q +L+ T+ E + + +
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122
Query: 104 GMSLQQIKEKAEYLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
G+S + E+AE A + + LSGGQQ+RV++A L +PE+++ DEPTS
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
+DP + E+ + LAE GRT+++ TH + A+ SH+I L +G + EE PP+ +
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL-HQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-29
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I + K + VL + + V++ I +++G SG GK+TLL I G + G +
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 68 -------HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAE 115
LS ++++G + Q +L+ T+ E + + + +S ++I+E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ L + LSGG ++RV+LA L DPELL+ DEPT+G+DP+ + I +
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 175 LLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
+ L + G T ++ TH +D A + I ++ G ++ E P+ L
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-29
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 41 LLGASGCGKTTLLSCITG-------QNVLNG-------GNIHLSITSKKQLGFMPQQISL 86
+ GASG GK+TLL CI G VLNG I+L ++++G + QQ +L
Sbjct: 28 IFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP-PQQRKIGLVFQQYAL 86
Query: 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAI 145
+P + E + + GL ++ + + L LL L+H R LSGG+++RV+LA
Sbjct: 87 FPHLNVRENLAF-GL-KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALAR 144
Query: 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSH-MIGL 203
L PELL+LDEP S +D + ++ L + ++ ++ TH + EA+ I +
Sbjct: 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204
Query: 204 MRKGILL 210
M G L
Sbjct: 205 MEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-29
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 38/159 (23%)
Query: 41 LLGASGCGKTTLLSCITGQNV---------LNGGNIHLSITSKKQLGFMPQQISLYPEFT 91
++G SG GK+TLL+ + G+ +NG + + +K +G++PQ L+P T
Sbjct: 40 IMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQDDILHPTLT 98
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ E + F K LSGG+++RVS+A+ L+ +P
Sbjct: 99 VRETL----------------------------MFAAKLRGLSGGERKRVSIALELVSNP 130
Query: 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LL LDEPTSG+D A ++ + L LA++GRTI+ + H
Sbjct: 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-29
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 24/227 (10%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ V+N ++ + LD + +++K L+G SG GK+TL I G G
Sbjct: 2 LEVKNLSVSFPTGGGSVK-ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 66 NI-----HLSITSKKQL-------GFMPQ--QISLYPEFTIDEMIC--YYGLIYGMSLQQ 109
+I L S++ + Q SL P TI E I +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 110 IKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
KE L + L R LSGGQ++RV++A L +P+LLI DEPTS +D +
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212
+I + L L E G T+L TH + K + + +M G ++EE
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-29
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---IT----SKKQL 77
L + ++V+K LLG SGCGKTTLL I G G I+ IT K+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 78 GFMPQQISLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNHFKRKC-GSLSG 135
G + Q +L+P T+ + I YGL GM ++ E+ L L+ L +RK G LSG
Sbjct: 79 GIVFQSYALFPNLTVADNIA-YGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSG 137
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDE 194
GQQ+RV+LA L P LL+LDEP S +D + E + + L G T ++ TH +E
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE 197
Query: 195 A 195
A
Sbjct: 198 A 198
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-------------SI 71
+D + +++ L+G SG GK+TL + G + G+I +
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHL--NHFKR 128
+ Q+ F SL P T+ +++ + G S + + + L L+ L R
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILI 187
LSGGQ++RV++A L +P+LLILDEP S +D + ++ N L L E G T L
Sbjct: 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+H + + + + +M G ++EE P + + E
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ +EN KR + LD L + + LLG SGCGKTT L I G G I+
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 69 LS---IT----SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
+ +T + + + Q +LYP T+ + I + GL + + +I E+ + L
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF-GLKLRKVPKDEIDERVREVAEL 117
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
L + H RK LSGGQ++RV+L ++ +P++ ++DEP S +D + ++ L L
Sbjct: 118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ 177
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209
G T + TH EA + I +M G +
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-28
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I VEN + ++ VL+ + ++V+K I +L+G +G GK+TLL I G + G I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 68 HLS------ITSKKQLGFMPQQISLYPEF--TIDEMI---CYY-GLIYGMSLQQIKEKAE 115
+ + ++G++PQ+ S+ F T+ +++ Y + ++ KEK +
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ + R+ G LSGGQ++RV LA L +P+LL+LDEP +G+D +EI++
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181
Query: 175 LLYLAESGRTILITTHYIDEAKK 197
L L + G+T+L+ TH +
Sbjct: 182 LKELRQEGKTVLMVTHDLGLVMA 204
|
Length = 254 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 20/183 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI----------TSK 74
+L+ + + V+ + ++LG+SG GKTTLL I+G+ V GG I +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-VEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQ----ALLHLNHFK 127
K + ++ Q L P T+ E + Y ++ S K++ E + AL +
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
K +SGG++RRVS+A+ LL DP++LILDEPTSG+D A + + L LA R +++
Sbjct: 141 VK--GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL 198
Query: 188 TTH 190
T H
Sbjct: 199 TIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-28
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 37/237 (15%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---- 64
I + + + K + L + + + K I +L+G SGCGK+TLL + N L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 65 -GNIHLS-----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
G + L + ++++G + Q+ + +P +I Y + YG+ L IK
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSI-----YDNVAYGLRLHGIKL 112
Query: 113 KAEY----LQAL----LHLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
K E +AL L + K + LSGGQQ+R+ LA L ++PE+L+LDEPTS
Sbjct: 113 KEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218
+DP+ +I + L + TI+I TH + +A + + + G L+E P + +
Sbjct: 172 LDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-28
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 47/208 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +N + + VL + +T++ +++G SG GK+TLL + G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 69 L------SITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + + K + ++PQ L+ TI E I
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENI----------------------- 96
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
LSGGQ++R+++A LL DP +LILDE TS +DP I L LA
Sbjct: 97 -------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
Query: 180 ESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ G+T+++ H + + + I ++ G
Sbjct: 144 K-GKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-28
Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 25/219 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I VEN K + + L + +++ +L+G SG GK+TLL C+ G G++
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 69 LSITS------------KKQLGFMPQQISLYPEFTI---------DEMICYYGLIYGMSL 107
+ T ++Q+G + QQ +L ++ + L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
++ + L+ + L+ ++ LSGGQQ+RV++A L+ P+L++ DEP + +DP
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179
Query: 168 AEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGL 203
+ ++ + L + E G T++++ H +D A++ ++GL
Sbjct: 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 9e-28
Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 15 YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI 67
Y L+ + + +++ ++G SG GK+TL + +G +L+G +
Sbjct: 13 YGGGKFAFH-ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71
Query: 68 HLSITSK---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
+K + + + Q SL P T+ ++ + L + +++ L +
Sbjct: 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIAELLDQVG 129
Query: 123 LN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
L R+ LSGGQ++R+++A L+ +P+LLILDEPTS +D + +I N LL L +
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK 189
Query: 181 S-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G T L +H + + I +M G ++E P + LL
Sbjct: 190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-27
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 22/214 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---HLSITSKK------ 75
VL + + + + + ++G SG GK+TLL CI + G++ L + K
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 76 --QLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHL----NHFKR 128
+ G + QQ L+P T E + + L + G S ++ +++A L A + L +H+
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP- 134
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQQ+RV++A L P+L++ DEPTS +DP + E+ + LAE G T++I
Sbjct: 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIV 192
Query: 189 THYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
TH I A+K S +I + KG + E+ P+VL++
Sbjct: 193 THEIGFAEKVASRLI-FIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 10/179 (5%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNVLNGG-NIHLSITSKKQ-L 77
+D+L +T ++ I + LG +G GKTT LS +TG VL GG +I ++ + +Q L
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGG 136
G PQ L+ T+ E I +Y + G S ++ + + E + L+H + + LSGG
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGG 1065
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
QR++S+AI + D ++++LDEPTSG+DP IW+ LL SGRTI+++TH++DEA
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD-LLLKYRSGRTIIMSTHHMDEA 1123
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 19/230 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------- 60
I V K ++ +LD + + V + I ++LG SG GK+TLL I G
Sbjct: 8 LIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 61 VLNGGNI-HLSITSK----KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKA 114
+++G +I LS K++G + QQ +L+ T+ E + + + + I+E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 115 -EYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
L+ + L LSGG ++RV+LA + DPELL LDEPTSG+DP+ A I
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 173 NHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ L ++ G T+++ TH +D + + ++ G ++ E P+ LL
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 63/213 (29%), Positives = 115/213 (53%), Gaps = 20/213 (9%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS----KKQ 76
+ L + + V++ + +LG +G GK+ LL I G + G I L+ IT+ K+
Sbjct: 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD 72
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-----QIKEKAEYLQALLHLNH-FKRKC 130
+ ++PQ +L+P T+ + I Y G+ + +I+ K + +L ++H RK
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
+LSGG+Q+RV++A L+ +P++L+LDEP S +D E++ L + E G T+L T
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 190 HYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
H +EA + + +M G L++ P+ + +K
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-27
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 20/207 (9%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLN 63
++N K+ K+ +LD L +T++K +Y+++G SG GK+TLL+ I +GQ LN
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 64 GGNIHLSITSKK-------QLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKA 114
G + SKK +LG++ Q +L T++E + GL Y ++ ++K
Sbjct: 59 GQET-PPLNSKKASKFRREKLGYLFQNFALIENETVEENL-DLGLKYKKLSKKEKREKKK 116
Query: 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
E L+ + K+K LSGG+Q+RV+LA +L P L++ DEPT +DP +E+ +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMI 201
LL L + G+TI+I TH + AK++ +
Sbjct: 177 LLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 9e-27
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKK 75
LD++ QK I LG +G GK+T + ITG + G++ + ++
Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---NHFKRKCGS 132
+G++P+ LY + + E + + IYGM Q +K++ E + L+ L H +K G
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH--KKIGQ 133
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LS G ++RV LA L+HDP++LILDEPT+G+DP EI N + + + +TI+++TH +
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIM 192
Query: 193 DE 194
E
Sbjct: 193 QE 194
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 22/234 (9%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC-------------ITGQNVLNGGNIHLSITSKKQLGF 79
+ K I+ ++G SG GK+T + I G+N++ + L +K++G
Sbjct: 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQ 138
+ QQ +L+P TI + + G Q+ KEKA L L+ L + R LSGG Q
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQ 135
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+RV LA L +P++L++DE S +DP+I + + + L L A +TI+ TH +DEA +
Sbjct: 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR 195
Query: 198 -SHMIGLMRKGILLEESPPKVLL----EKYNMKSLEDVFLLLSSKQQHDRIEQR 246
I +M+ G +++ P +L +Y + + V L + I QR
Sbjct: 196 IGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAER--IAQR 247
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-26
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 35/227 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHL----SITSK 74
+ ++ I +L+G SGCGK+T L ITG L G NI+ + +
Sbjct: 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EYLQALLHL-------- 123
KQ+G + QQ + +P F+I Y +IYG+ L +K+KA E ++ L
Sbjct: 86 KQVGMVFQQPNPFP-FSI-----YENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK 139
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+H SLSGGQQ+RV +A L P++++LDEPTS +DP+ + +I N LL L +
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-Y 198
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI++ TH + +A + S G L+E + K + K ED
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETED 245
|
Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-26
Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 47/255 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ 55
AI +EN + K L + + + K+ + +L+G SGCGK+TLL
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 56 ITGQNVLNGGNIHLSITSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
I G+ + +G +I+ +L G + Q+ + +P M Y + YG L IK
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP------MSIYDNIAYGPRLHGIK 112
Query: 112 EKAEY-------LQ--AL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
+K E L+ AL LH + LSGGQQ+R+ +A L +PE+L+
Sbjct: 113 DKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQQQRLCIARALAVEPEVLL 167
Query: 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
LDEPTS +DP+ +I + L + TI+I TH + +A + S G L+E P
Sbjct: 168 LDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 215 PKVLLEKYNMKSLED 229
+ + K ED
Sbjct: 227 TEQIFTNPKEKRTED 241
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-26
Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------ 58
D + EN K + + V++ + + V I LLG +G GKTT I G
Sbjct: 1 DMSTLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 59 -QNVLNGGNI-HLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGMSL--QQIKE 112
+ +L+ +I L + + +LG ++PQ+ S++ + T+++ I I L + KE
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 113 KAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ + L H+ H K SLSGG++RRV +A L +P+ ++LDEP +G+DP+ +I
Sbjct: 119 ELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 172 WNHLLYLAESGRTILITTHYIDE 194
+ +L + G +LIT H + E
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRE 201
|
Length = 243 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-25
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----------SIT 72
P VL L ++ + +LLGA+G GK+TLL + G G + + +
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 73 SKKQLGFM----PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-K 127
++Q + P +D+ + + L G+S +++ + + + +
Sbjct: 65 ERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
R LSGG+++RV++A + P++L+LDEPT+G+DP E++ L L G T++I
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVI 182
Query: 188 TTHYIDEA 195
+TH +D A
Sbjct: 183 STHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-25
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMPQQISLYPEFTID 93
LLG SGCGKTTLL + G + G+I L + + + Q +L+P T++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPE 152
E + + + + +IK + L+ L F RK LSGGQQ+RV+LA L+ P+
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA-KKSHMIGLMRKGILL 210
+L+LDEP S +D + +++ L + E G T + TH +EA S I +MRKG +
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA 180
Query: 211 EESPPKVLLE 220
+ P+ + E
Sbjct: 181 QIGTPEEIYE 190
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I ++N K + L + ++V K I+ ++G SG GK+TL+ CI G G+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 67 IH-----LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+ L++ S K+L G + Q +L T+ E + I G+ +I+E+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L L+ L LSGGQ++RV +A L ++P++L+ DE TS +DP + I
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 174 HLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L + E G TI++ TH ++ K+ + +M KG ++EE
Sbjct: 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 28/222 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH--------L 69
VL + + + S++G+SG GK+T L CI G V+NG I+ L
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 70 SITSKKQLGFMP-------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALL 121
+ K QL + Q +L+ T+ E + + + G+S Q+ +E+A A +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 122 HLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
++ + LSGGQQ+RVS+A L +PE+L+ DEPTS +DP + E+ + LA
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA 199
Query: 180 ESGRTILITTHYIDEAK--KSHMIGLMRKGILLEESPPKVLL 219
E G+T+++ TH + A+ SH+I + +G + EE P+ L
Sbjct: 200 EEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 61/207 (29%), Positives = 113/207 (54%), Gaps = 18/207 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI------HLSIT 72
++ + V++ I+ ++G SG GK+TL+ + G+ +++G +I L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKC 130
+K++ + Q +L P T+ E + + GL + G+ + +E+A L+ L + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAF-GLEVQGVPKAEREERALEALELVGLEGYADKYP 162
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
LSGG Q+RV LA L +DP++L++DE S +DP+I E+ + LL L A+ +TI+ T
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 190 HYIDEAKK-SHMIGLMRKGILLEESPP 215
H +DEA + I +M+ G +++ P
Sbjct: 223 HDLDEALRIGDRIAIMKDGEIVQVGTP 249
|
Length = 386 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-25
Identities = 65/208 (31%), Positives = 116/208 (55%), Gaps = 12/208 (5%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIHLSITSKKQ 76
+ +D + +T+ K I++LLGASGCGK+TLL + G Q +L+G ++ ++
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
+ M Q +L+P T+++ I + GL + +I + + L+H+ F KRK LS
Sbjct: 93 INMMFQSYALFPHMTVEQNIAF-GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLS 151
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYID 193
GGQ++RV+LA +L P+LL+LDEP +D + + + ++ + E G T ++ TH +
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211
Query: 194 EA-KKSHMIGLMRKGILLEESPPKVLLE 220
EA + I +M +G ++ P+ + E
Sbjct: 212 EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
Length = 377 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 5e-25
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 44/194 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSK---K 75
VLD L ++++ I +LG +G GK+TLL + G + G I L S++ K +
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR 73
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
++ ++PQ + E L L HL R LSG
Sbjct: 74 KIAYVPQAL------------------------------ELLG-LAHLAD--RPFNELSG 100
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDE 194
G+++RV LA L +P +L+LDEPTS +D E+ L LA E G+T+++ H ++
Sbjct: 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160
Query: 195 AKK-SHMIGLMRKG 207
A + + + L++ G
Sbjct: 161 AARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-25
Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N K + L + + + + + +++G SG GK+TLL + G G I
Sbjct: 3 MIEVKNLSKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 68 HL---SITSKK---------QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI----- 110
IT K +G + QQ +L P ++ E + L Y + + +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 111 -KEKAEYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
++KA+ L AL + ++ +LSGGQQ+RV++A L+ P++++ DEP + +DP
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 167 IAEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEK 221
A+++ + L + E G T+++ H +D AKK +IG ++ G ++ + P L ++
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG-LKAGRIVFDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 7e-25
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 31/211 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS-------K 74
+L + + V K + +LG +G GKTTLL + G + G+I L IT +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---------EYLQALLHLNH 125
+ ++PQ ++P T++E L+ G++ + + L+ +L
Sbjct: 75 AGIAYVPQGREIFPRLTVEE-----NLLTGLAALPRRSRKIPDEIYELFPVLKEMLG--- 126
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-T 184
R+ G LSGGQQ+++++A L+ P+LL+LDEPT GI P I ++I + L G
Sbjct: 127 --RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184
Query: 185 ILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
IL+ Y+D A++ + +M +G ++
Sbjct: 185 ILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 8e-25
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 25/215 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS-------K 74
L + + V++ I +LLG +G GKTTLL I G G I IT +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
+ ++P+ ++P T++E + L+ + + + + L+ + L F
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENL----LLGAYARRDKEAQERDLEEVYEL--FPRLKERRN 131
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTIL 186
++ G+LSGG+Q+ +++A L+ P+LL+LDEP+ G+ P I EEI+ + L E G TIL
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191
Query: 187 ITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ A + + ++ G ++ LL
Sbjct: 192 LVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-25
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 44/267 (16%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI V+N K+ + VL + + V+ + +++G SG GKTTLL CI G I
Sbjct: 3 AIEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 68 HL---------SITSKK--------QLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQ 109
+ S++ +K +GF+ Q +L+P T+ E I +I G ++
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE 120
Query: 110 IKEKAEYLQALLHL----NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
+A L A + L + R+ LSGGQQ+RV++A L PE+++ DEPTS +DP
Sbjct: 121 ATARARELLAKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177
Query: 166 VIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224
+ E+ N + LA+ RT++I TH + A+ + M +G ++E+ P K L
Sbjct: 178 ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF----- 232
Query: 225 KSLEDVFLLLSSKQQHDRIEQRRKSFL 251
+ Q R Q + FL
Sbjct: 233 -----------ADPQQPRTRQFLEKFL 248
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-24
Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 27/234 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN K + + L + + + +++G SG GK+TLL CI + G+I
Sbjct: 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 69 LSITS------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI------ 110
L T ++++G + Q +L T+ E + + L Y + + +
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 111 KEKAEYLQALLHLN----HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
++K L AL + ++R LSGGQQ+RV++A L P+L++ DEP + +DP
Sbjct: 121 EDKERALSALERVGLADKAYQR-ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179
Query: 167 IAEEIWNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKV 217
++++ ++L + E G T++I H +D AKK ++GL I+ + +P ++
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-24
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
IR EN K + L + + K L G SG GK+TLL I G+ G I
Sbjct: 2 IRFENVSKAYPG-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 68 ----HLSITSKKQLGFMPQQIS-------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
LS +++ F+ +QI L P+ T+ E + + G ++I+ +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 117 LQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ L+ L H R S LSGG+Q+RV++A +++ P +L+ DEPT +DP ++ EI
Sbjct: 121 VLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180
Query: 176 LYLAESGRTILITTH 190
+ G T+L+ TH
Sbjct: 181 EEINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-24
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----Q 76
++ + + V+ I L+G +G GKTTL + ITG + G + IT +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78
Query: 77 LG----FMPQQISLYPEFTIDE-----MICYYGLI-------YGMSLQQIKEKAEYLQAL 120
LG F Q L+P T+ E GL ++ +E+A L
Sbjct: 79 LGIARTF--QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL- 178
+ L R G+LS GQQRR+ +A L P+LL+LDEP +G++P EE+ + L
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 179 AESGRTILITTH 190
G TIL+ H
Sbjct: 197 DRGGVTILLIEH 208
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 3e-24
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 45/237 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITS 73
L+ + + + I +L+G SG GK+TLL I TG V NG NI+ T
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 74 ----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL--------- 120
+K++G + QQ + +P +I Y ++YG+ L+ IK+K +A+
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSI-----YENVVYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 121 -------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
LH + LSGGQQ+RV +A L P++++LDEPTS +DP+ A +I
Sbjct: 135 WDEVKDRLHDSAL-----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 174 HLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
LL L + T+L+ T + +A + S G G L+E + K + K ED
Sbjct: 190 TLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETED 245
|
Length = 252 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN R+ P VL+ L + + +++G SG GK+TLL + G G I
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 69 LSITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA----- 114
L ++Q+G++ Q L+ +I E I + ++I E A
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPEA--TDEEIIEAAQLAGA 588
Query: 115 -EYLQALLHLNHFK--RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
E+++ L +LSGGQ++R++LA LL P++L+LDE TS +DP I
Sbjct: 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+LL + + GRT++I H + + + I ++ +G ++E+ + LL +
Sbjct: 649 LQNLLQILQ-GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697
|
Length = 709 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 4e-24
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGF 79
++ + +TV K+++Y LLG +G GK+TLL ITG G I + ++G
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL----NHFKRKCGSLSG 135
+ + LY T E + + + G+ +I E +L++ N K+K S
Sbjct: 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDE-------VLNIVDLTNTGKKKAKQFSL 127
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
G ++R+ +AI LL+ P+LLILDEPT+G+DP+ +E+ + E G T+++++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187
Query: 196 KK-SHMIGLMRKGIL 209
++ + IG++ +G+L
Sbjct: 188 QQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 43/248 (17%)
Query: 9 IRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------- 56
+ VEN + ++P + + V+ I ++G SG GK+TL +
Sbjct: 6 LEVENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 57 --TGQNVLNGGNIHLSITS-------KKQLGFMPQQI--SLYPEFTIDEMIC-YYGLIYG 104
+G+ +L+G ++ L ++ K++ + Q SL P TI + I L
Sbjct: 65 ITSGEVILDGRDL-LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123
Query: 105 MSLQQIKEKAEYLQALLHLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTS 161
S + +++A L + L +R+ LSGG ++RV +A+ L P+LLI DEPT+
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 162 GIDPVIAEEIWNHLLYL-AESGRTILITTH------YI-DEAKKSHMIGLMRKGILLEES 213
+D +I + L L E G +L TH + D + +M KG ++E
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADR------VVVMYKGEIVETG 237
Query: 214 PPKVLLEK 221
P + +L
Sbjct: 238 PTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
+ +N R+ P VL + + + +L+G SG GK+TL++ I G+ +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 62 LNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ ++ S ++Q+G + Q + L+ + T+ E I Y G G + ++++E A A
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAY-GR-PGATREEVEEAAR--AA 115
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
H F + LSGGQ++R+++A LL DP +LILDE TS +D
Sbjct: 116 NAH--EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
+ L L + RT + H + + + I ++ G ++E
Sbjct: 174 ERLVQAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 1e-23
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
IR+ N KR + LD + + ++ + +LLG SG GK+TLL I G + G I
Sbjct: 3 IRINNVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 69 LS----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAE 115
L+ +++GF+ Q +L+P T+ + I + GL S +I+ + E
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-GLKVRKERPSEAEIRARVE 119
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L L+ L R LSGGQ++RV+LA L +P++L+LDEP +D + +E+
Sbjct: 120 ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 175 LLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
L L G T + TH +EA + + + ++ +G + + PP
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222
|
Length = 345 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 29/236 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +EN R+ P L L +T++ + +L+GASG GK+TLL+ + G G I
Sbjct: 321 ISLENLSFRYPDGKP-ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 68 -------HLSITSK-KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
LS + KQ+ ++ Q L+ TI E I S ++I +
Sbjct: 380 VNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR--PDASDEEIIAALDQAG- 435
Query: 120 LLHLNHFKRKCG-----------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
L F K LSGGQ +R++LA LL LL+LDEPT+ +D
Sbjct: 436 ---LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+ I L LA+ +T+L+ TH +++A + I ++ G L+E+ + L EK +
Sbjct: 493 QIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGL 547
|
Length = 559 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-23
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 43/233 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + +++ K+ + +L+G SGCGK+TLL C ITG + NG NI S
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQAL----- 120
+ ++++G + Q+ + +P+ +I E + Y I+G +L I EK+ AL
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 121 --LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LH + SLSGGQQ+R+ +A TL +PE++++DEP S +DP+ +I + + L
Sbjct: 141 DRLHDSAL-----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
+ T++I TH + +A + S G M G L+E E+P + L E Y
Sbjct: 196 KKE-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENY 247
|
Length = 253 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-23
Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 17/220 (7%)
Query: 9 IRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
++ EN KR+ VL + +++ K I +++G+SG GK+TLL + +G+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 60 NVLNGGNIH-LSITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113
+ NG ++ LS + K+LGF+ Q L P+FT E + LI S+++ KE+
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
A + + L H + LSGG+++RV++A L++ P L++ DEPT +D A+ I+
Sbjct: 122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 173 NHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLE 211
+ +L L E + L+ TH ++ AKK + M+ G L
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 55/221 (24%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN + + +L+ + +T+ L+G +G GK+TLL + G+ + G +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV- 60
Query: 69 LSITSKKQLGFMPQQISLYPEFTI-DEMIC-----------YYGLIYGMSLQQIKEKAEY 116
+ ++G++ Q+ L PE T+ D +I ++ + AE
Sbjct: 61 -TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119
Query: 117 LQAL------------------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158
L L R SLSGG +RRV+LA LL +P+LL+LDE
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 159 PTSGIDPVIAEEIWNHL-------L--YLAESGRTILITTH 190
PT NHL L YL T+++ +H
Sbjct: 180 PT------------NHLDLESIEWLEDYLKRYPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-23
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 9 IRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I +EN K LD + + + K I+ ++G SG GK+TLL I +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 59 QNVLNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
++G ++ + S+ +L G + Q +L T+ E + + + G+ +IK
Sbjct: 62 SVFVDGQDL--TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 112 EKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
++ L L+ L+ R LSGGQ++RV++A L ++P++L+ DE TS +DP +
Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 171 IWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
I L + E G TI++ TH ++ K+ + ++ +G L+EE
Sbjct: 180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-23
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-------VLNGGNIHLSITSKKQL 77
+LD L + + I +L G +G GKTTL + G +LNG I K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-I 73
Query: 78 GFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLS 134
G++ Q + L+ + +E GL L E+AE + L L K R SLS
Sbjct: 74 GYVMQDVDYQLFTDSVREE--LLLGL---KELDAGNEQAETVLKDLDLYALKERHPLSLS 128
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GGQ++R+++A LL +LLI DEPTSG+D E + + LA G+ +++ TH
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 6e-23
Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI----------HLSITSK 74
V++ + +TV I LLG +G GKTT + G + GNI L ++
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 75 KQLGFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-S 132
+ +G++PQ+ S++ ++ D ++ + +S +Q +++A L H+ H + G S
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGG++RRV +A L +P+ ++LDEP +G+DP+ +I + +L +SG +LIT H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 193 DE 194
E
Sbjct: 198 RE 199
|
Length = 241 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-23
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 36/249 (14%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ 55
AI V + + K L + + + K+ + +L+G SGCGK+TLL C
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 56 ITGQNVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQ 108
+ G+ +L+G NI+ ++++G + Q+ + +P +I + + Y ++G+ L
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELD 123
Query: 109 QIKEKAEYLQAL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
+I E + AL LH + LSGGQQ+R+ +A L PE+L++DEPTS
Sbjct: 124 EIVESSLKKAALWDEVKDRLHKSAL-----GLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+DP+ +I + L + TI+I TH + +A + S G L+E P +
Sbjct: 179 ALDPISTLKIEELITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237
Query: 221 KYNMKSLED 229
K ED
Sbjct: 238 NPKHKRTED 246
|
Length = 253 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 1e-22
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I + N KR S LD + + V ++ +LLG SG GK+TLL I +G+
Sbjct: 1 IEIANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
LNG + +++GF+ Q +L+ T+ + I + I +IK + E L L+
Sbjct: 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV 118
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI--WNHLLYL 178
L R LSGGQ++RV+LA L +P++L+LDEP +D + +E+ W L+
Sbjct: 119 QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKG 207
T+ +T + + + I +M G
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ + KR + D + ++V+K I++LLG +G GK+TL+ + G + G I
Sbjct: 4 ALEMRGITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 68 -----HLSITSKKQ-----LGFMPQQISLYPEFTIDEMICYYGLIYGM--------SLQQ 109
+ I S + +G + Q L P T+ E I I G+ +Q
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-----ILGLEPSKGGLIDRRQ 116
Query: 110 IKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+ + + L L K LS G+Q+RV + L LLILDEPT+ + P A
Sbjct: 117 ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207
+E++ L LA G+TI+ TH + E + + ++R+G
Sbjct: 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 62/209 (29%), Positives = 113/209 (54%), Gaps = 10/209 (4%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN-- 66
+R+ K +S +D+LC+ V+ + LLG +G GKTT +TG + G+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 67 -----IHLSITSKKQ-LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-LQA 119
I +I+ Q +G+ PQ ++ T E + Y + G+ ++I++ A + +Q+
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + R G+ SGG +R++S AI L+ P L++LDEPT+G+DP +WN ++ +
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKG 207
GR +++T+H ++E + + +M KG
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-22
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I+V+N K + KLP LD + + + + +++G +G GKTT + + + + G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 66 NIH-----------------------LSITSKKQLGFMPQ---------QISLYPEF--T 91
I + T K++ + + Q + Y F T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 92 IDEMICYYGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
I++ I + + G+S ++ K++A +Y++ + L ++ +R LSGGQ+RRV+LA L
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
+P+ L+ DEPT+G+DP +EI L + G+TI++ TH +D
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228
|
Length = 305 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-22
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-------------ITSK 74
T+ + ++ G SG GKTTL+ I G + G I L+ K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EYLQALLHLNHF-KRKC 130
+++G++ Q+ L+P ++ L YGM + E+ E + LL + H R
Sbjct: 75 RRIGYVFQEARLFPHLSVRG-----NLRYGMKRARPSERRISFERVIELLGIGHLLGRLP 129
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITT 189
G LSGG+++RV++ LL P LL++DEP + +D EI +L L AE G IL +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 190 HYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228
H + E + + + ++ G + P + ++ L
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ + N + + L +T+ + ++LG SG GK+TLL + G G+I
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYY----GLIYGMSLQQI---KEKA--EYLQ 118
L+ I+ E + E I L G + A E L
Sbjct: 396 TLNGVE----------IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445
Query: 119 ALLH---LNHFKRKCGS------------LSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
A L L LSGG++RR++LA LLHD L +LDEPT G+
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
DP+ ++ L AE G+T+L+ TH + ++ I ++ G ++EE LL
Sbjct: 506 DPITERQVLALLFEHAE-GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQL-------GFMPQQIS 85
LLG SG GK++LL + + G +++ S K + G + QQ +
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92
Query: 86 LYPEFT-IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSL 143
L+P T +I + G+S Q +AE L L L + R LSGGQQ+RV++
Sbjct: 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMI 201
A L+ +P++L+ DEPT+ +DP I +I + + LAE+G T +I TH ++ A+K S ++
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
Query: 202 GLMRKGILLE 211
M G ++E
Sbjct: 213 -YMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-22
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLL-----------SCITGQNVL-NGGNIHLSIT 72
+D + ++K I ++G SG GK+ L + I G +L +G ++ LS++
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDL-LSLS 78
Query: 73 SK-------KQLGFMPQ--QISLYPEFTIDEMIC--YYGLIYGMSLQQIKEKAEYLQALL 121
K K++ + Q SL P TI + I G+S ++ KE+A L L+
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV 138
Query: 122 HLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
+ +R+ S LSGG ++RV +A+ L +P+LLI DEPT+ +D + +I + L
Sbjct: 139 GIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 178 LA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
L E G +++ TH + + + + +M G ++EE P + + +
Sbjct: 199 LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-22
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V N KR + LD + + + + +LLG SG GKTTLL I G + G I
Sbjct: 2 SIEVRNVSKRFGDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 68 --------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-----IYGMSLQQIKEKA 114
+ + ++ +GF+ Q +L+ T+ + + + GL +I+ K
Sbjct: 60 LFGGEDATDVPV-QERNVGFVFQHYALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKV 117
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L L+ L+ R LSGGQ++RV+LA L +P++L+LDEP +D + +E+
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177
Query: 174 HLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKG 207
L L E T + TH +EA + + + +M KG
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 2e-21
Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 25/228 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIH---L 69
+ + M + K+ I +++G SGCGKTTLL I G+ G +I+ L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 70 SITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH-- 122
+T +K++G + Q+ + +P +I + + + I+G+ L +I E++ AL
Sbjct: 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV 136
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ + LSGGQQ+R+ +A L +PE+++LDEPTS +DP+ + I L L+E+
Sbjct: 137 KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN- 195
Query: 183 RTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI+I TH I +A + + I M +G L+E P + ++E+ K E+
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEE 243
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-21
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 26/205 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHL--SITSK 74
+L + + + IY+++G SG GK+TL+ I G +++G +I I +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYLQALLHLN--HFKRKCG 131
+++G + QQ L+ E T+ + I YG L+ K EY +++ LN + R
Sbjct: 77 RKIGMVFQQPHLF-EGTVKDNI-----EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
+LSGG+ +RVS+A TL ++PE+L+LDEPTS +DP E I ++ L T++ TH
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
Query: 191 YIDEAKKSHMIG----LMRKGILLE 211
+++AK+ IG + KGIL+E
Sbjct: 191 NMEQAKR---IGDYTAFLNKGILVE 212
|
Length = 241 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 3e-21
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 37/244 (15%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L+ + + + ++ I +L+G SGCGK+T L C I G+ +L+G NI+
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH--L 123
+ +K++G + Q+ + +P +I + + Y I+G+ L +I E A AL
Sbjct: 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K+ LSGGQQ+R+ +A T+ P+++++DEPTS +DP+ +I + ++ L +
Sbjct: 139 DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE-Y 197
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDR 242
TI+I TH + +A + S G L+E E +FL K+ D
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLMGDLIE------------FNKTEKIFLEPQKKETEDY 245
Query: 243 IEQR 246
I R
Sbjct: 246 ISGR 249
|
Length = 251 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-21
Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---------GGNIHLSITSKKQLGFMP 81
+ +++ I L+G SG GK+TLL + G N ++ G++ ++ L +
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 82 --------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCG 131
QQ +L P T++E + + GL + GM + +++ + L+ L + RK G
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAF-GLEMQGMPKAERRKRVDEQLELVGLAQWADRKPG 163
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTH 190
LSGG Q+RV LA + +L++DEP S +DP+I ++ + LL L ++ +TI+ +H
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
Query: 191 YIDEAKK-SHMIGLMRKGILLEESPPK 216
+DEA K + I +M G +++ P+
Sbjct: 224 DLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 3e-21
Identities = 56/177 (31%), Positives = 103/177 (58%), Gaps = 11/177 (6%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+T + I +++G SG GK+TLL+ I +G+ ++NG ++ + + + + + Q+
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQALLHLNHF-KRKCGSLSGGQQRRV 141
+L+ T+++ + GL G+ L +A E A + L KR G LSGG+++RV
Sbjct: 79 NNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+LA L+ D +L+LDEP + +DP + E+ + +L L AE+ T+L+ TH ++AK+
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 3e-21
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ + K K V+ L +T+ +LLG SGCGKTT+L I G + G
Sbjct: 12 SPLVELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69
Query: 66 NIHLS---ITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-----QIKEK 113
I L IT + + + Q +L+P T+ E + + G+ +Q +I +
Sbjct: 70 RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF-----GLRMQKTPAAEITPR 124
Query: 114 AEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
++ L F +RK LSGGQQ+RV++A +++ P++L+LDE S +D + +++
Sbjct: 125 VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184
Query: 173 NHLLYLA-ESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLE 220
N L L + G T + TH +EA S I +MR G + ++ P+ + E
Sbjct: 185 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234
|
Length = 375 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 4e-21
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---------TGQ 59
IR+++ + + VLD L + ++ + +L+G SGCGKTTLL I TG+
Sbjct: 6 IRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR 63
Query: 60 NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-AEYLQ 118
+ ++ + K+ L + Q +L+P +++ + + M I E+ A+ L+
Sbjct: 64 IAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALK 123
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ + LSGG Q+R+++A + +P++L+LDEP S +D I + + L
Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183
Query: 179 AES--GRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPKVLLE 220
E TIL TH D+A + G+M+ G L P+ L +
Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 6e-21
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 18/232 (7%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70
+ + + R + V D + + K I LGA+G GK+T L +TG + G +
Sbjct: 26 LNHFFHRKERSIEAVQD-ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG--KVR 82
Query: 71 ITSK----------KQLGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ K + +G M Q++ L+ + + + LIY + + E+ ++L
Sbjct: 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-Y 177
+L L F K LS GQ+ R LA LLH P++L LDEPT G+D I L Y
Sbjct: 143 ILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 178 LAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKY-NMKSL 227
E T+L+TTH D+ A + L+ +G L+ + L E++ K
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254
|
Length = 325 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 6e-21
Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 33/273 (12%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
I++ N K +K L+ + + V IY ++GASG GK+TL+ C+ +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 60 NVLNGGNI-HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+++G ++ LS +++Q+G + Q +L T+ + + +IK K
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 115 EYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L AL+ L S LSGGQ++RV++A L +P++L+ DE TS +DP + I
Sbjct: 122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSI-- 179
Query: 174 HLLYLAESGR----TILITTHYIDEAKK-SHMIGLMRKGILLEE-------SPPKVLLEK 221
L L E R TIL+ TH +D K+ + ++ G L+E+ S PK L +
Sbjct: 180 -LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
Query: 222 YNMKSLEDVFLLLSSKQQHDRIEQRRKSFLWPI 254
++S + + + +R++ + P+
Sbjct: 239 KFIRSTLHLSI---PEDYQERLQATPFADSVPM 268
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 9e-21
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---------------KKQLGFMPQQIS 85
LLG SG GK++LL + + G ++++ ++ +G + QQ +
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 86 LYPEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
L+P T+ E +I + G+S Q +AE L L L + R LSGGQQ+RV++
Sbjct: 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMI 201
A L+ +P++L+ DEPT+ +DP I +I + + LAE+G T +I TH ++ A+K S ++
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV 212
Query: 202 GLMRKGILLE 211
M G ++E
Sbjct: 213 -YMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
L + TV +L+G SG GK+TLL+ + G +NG + S +
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA------EYLQALLHLNHFKRK 129
Q+ ++PQ L+ TI E I S +I+E E++ AL
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLD--TP 451
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ +R++LA L D LL+LDEPT+ +D E+ L LA+ GRT+
Sbjct: 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTV 510
Query: 186 LITTH 190
L+ TH
Sbjct: 511 LLVTH 515
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
L + T++K I +G +G GKTT L ++G G + + ++
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 77 LGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
+G Q+ L+ + + + IY + + K++ + L LL L LS
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLS 155
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYID 193
GQ+ R +A LLH+PE+L LDEPT G+D V E I N L Y E G T+L+T+HY+
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 194 E 194
+
Sbjct: 216 D 216
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-20
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSK---K 75
+L+ L +++ I +L+G +GCGK+TLL C G + L ++S+ +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 76 QLGFMPQQISLYPE-FTIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNHF-KRK 129
+L +PQ L PE T+ E++ Y + ++G + + +NH R+
Sbjct: 77 RLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR 135
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
LSGGQ++R LA+ L D +++LDEPT+ +D E+ + L G+T++
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195
Query: 190 HYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
H +++A + H++ L ++ + +P +V+ L VF
Sbjct: 196 HDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL----LRTVF 235
|
Length = 255 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-20
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N K + + L + + ++K L G SG GKTTLL + G + G +
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 69 -----LSITSKKQLGFMPQQIS-------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
++ +QL + ++I L P+ T+ E + + G ++I+ +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 117 LQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ L H K LSGG+Q+RV++A +++ P LL+ DEPT +DP ++E I +
Sbjct: 121 ALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209
L L + G T+++ TH ++ + ++
Sbjct: 180 LKRLNKRGTTVIVATH------DLSLVDRVAHRVI 208
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-20
Identities = 64/222 (28%), Positives = 122/222 (54%), Gaps = 33/222 (14%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG------GNIHLS---ITSK---KQLGF 79
++ + +++G +G GK+TLL Q+ LNG G + + IT+ K+L
Sbjct: 29 SIPSGSYVAIIGHTGSGKSTLL-----QH-LNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 80 MPQQISL---YPE---F--TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRK 129
+ +++ + +PE F T+++ IC+ + +G+S + K+KA + L+ L R
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILIT 188
LSGGQ RRV++A L +PE+L+LDEPT+G+DP +E+ L E G T ++
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV 202
Query: 189 THYIDEAKK--SHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
TH +++A + ++ +M KG + L+ +P ++ + ++++
Sbjct: 203 THSMEDAARYADQIV-VMHKGTVFLQGTPREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-20
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 22 LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK 74
LP D +TV I ++LG SG GK+TLL+ I +G+ ++NG + S ++
Sbjct: 14 LPMRFD---LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAEYLQALLHLNHF-KRKCGS 132
+ + + Q+ +L+ T+ + I GL G+ L +EK E A + L F KR G
Sbjct: 71 RPVSMLFQENNLFAHLTVAQNIGL-GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE 129
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHY 191
LSGGQ++RV+LA L+ + +L+LDEP S +DP + E+ + L E T+L+ TH+
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 192 IDEAKKSHMIGLMRKGILLEE 212
++A + + + + L+
Sbjct: 190 PEDAAR-----IADRVVFLDN 205
|
Length = 231 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 5e-20
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 33/198 (16%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSITS 73
L + + + + +L+G SGCGK+TLL C ITG+ ++G +I+ +I
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 74 KK---QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-------EYLQALLHL 123
++G + Q+ + +P M Y + YG+ Q IK+K L+
Sbjct: 79 ADLRIKVGMVFQKPNPFP------MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 124 NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
+ K + S LSGGQQ+R+ +A T+ +P+++++DEPTS +DP+ +I L+
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI-EELMEEL 191
Query: 180 ESGRTILITTHYIDEAKK 197
+ TI+I TH + +A++
Sbjct: 192 KKNYTIVIVTHSMQQARR 209
|
Length = 249 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-20
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 15/204 (7%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSK- 74
VL + ++ + + +++G+SG GK+TLL + G + G++ LS +K
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
Query: 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRK 129
++LGF+ Q L P+FT E + LI +I +A + A + L H +
Sbjct: 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILIT 188
LSGG+++RV++A L+++P L++ DEPT +D A+ I+ L L G L+
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202
Query: 189 THYIDEAKKSHMIGLMRKGILLEE 212
TH + AK+ MR G L E
Sbjct: 203 THDLQLAKRMSRQLEMRDGRLTAE 226
|
Length = 233 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-20
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNV 61
C + V + + K L+ + +T+ + +LG SGCGKTTLL+ I G +
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
+ + ++ G + Q +L P + + + + + G+ Q +E A + AL+
Sbjct: 62 IQLNGRRIEGPGAER-GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 122 HLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
L + K LSGG ++RV +A L +P+LL+LDEP +D + E++ LL L
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 180 ESGRTILITTHYIDEA 195
E+G+ +L+ TH I+EA
Sbjct: 181 ETGKQVLLITHDIEEA 196
|
Length = 259 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-19
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 30/234 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
I EN + K P VL + +++ +++G +G GKTTL++ + GQ +
Sbjct: 3 IEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 62 LNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I +S S + +G + Q L+ TI E I G +E E +
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENI-----RLGRPNATDEEVIEAAKE 115
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ F K G+LS G+++ +++A +L DP++LILDE TS ID
Sbjct: 116 A-GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ I L L + GRT +I H + K + I ++ G ++EE LL K
Sbjct: 175 EKLIQEALEKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 1e-19
Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------I 56
I+VEN + K L + M + K+++ +L+G SGCGK+T + C I
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 57 TGQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS---LQQ 109
G+ + G +I+ + +K +G + Q+ + +P +I + + Y I+G + L
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDG 129
Query: 110 IKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ E A AL + K SLSGGQQ+R+ +A TL P++++ DEPTS +DP+
Sbjct: 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKS 226
I + ++ L + TI+I TH + +A + S G G L+E + + KS
Sbjct: 190 TARIEDLIMNLKKD-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248
Query: 227 LED 229
ED
Sbjct: 249 TED 251
|
Length = 258 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-19
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 53/239 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS-- 70
L + M + K+ + + +G SGCGK+TLL C I G+ L+G NI+
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-------- 120
++++G + Q+ + +P+ +I Y ++YG+ LQ I + +A+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPK-SI-----YENVVYGLRLQGINNRRVLDEAVERSLRGAA 153
Query: 121 --------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
LH N F LSGGQQ+R+ +A + +PE+L+LDEPTS +DP I+
Sbjct: 154 LWDEVKDRLHENAF-----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP-ISTLKI 207
Query: 173 NHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
L+ +S TI+I TH + +A + S M G L+E SP K E Y
Sbjct: 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDY 266
|
Length = 272 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-19
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 35/217 (16%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + + ++ + +L+G SGCGK+T L C ITG+ G NI+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-------AEYL-QALL 121
+ +K++G + QQ + +P F++ Y + YG+ + +K+K E L QA +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSV-----YDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 122 ---HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
++ R + SGGQQ+R+ +A L P++++LDEPTS +DP+ + EI L+ L
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
T ++ TH + +A + S + G L+E P
Sbjct: 194 KHQ-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-19
Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP 81
L ++ + + + I +L+GA+G GKTTLL + G G I IT + M
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 82 QQISLYPE-------FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR--KCGS 132
+ +++ PE T++E + G Q +E+ +++ L H +R + G+
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRAGT 137
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
+SGG+Q+ +++ L+ P LL+LDEP+ G+ P+I ++I++ + L E G TI +
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
++A K L +G +LE V+LE
Sbjct: 198 NQALK-----LADRGYVLENG--HVVLE 218
|
Length = 237 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-19
Identities = 76/245 (31%), Positives = 134/245 (54%), Gaps = 24/245 (9%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I++EN + P+ LD + + ++ L+G +G GK+TL+ + G G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 66 NIH---LSITSKK-QLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEK 113
I + IT KK +L + +++ L YPE+ TI++ I + + G+S ++I+ +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 114 AEYLQALLHLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ ++ L++ K S LSGGQ+RRV++A + +P++LILDEPT+G+DP +E
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 171 IWNHLLYL-AESGRTILITTHYI-DEAKKSHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
I N + L E TI++ +H + D AK + I +M KG L+ +P +V E +++L
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE---VETL 239
Query: 228 EDVFL 232
E + L
Sbjct: 240 ESIGL 244
|
Length = 287 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-19
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 15/198 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+IR N Y H S VL + + + I L G SG GKTTLL+ I G + G++
Sbjct: 3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL 62
Query: 68 -----HLSITSKKQL-------GFMPQQISLYPEFTIDE-MICYYGLIYGMSLQQIKEKA 114
L S+K+L G++ Q +L T + + L +S Q+ +E+A
Sbjct: 63 KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122
Query: 115 -EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L+A+ +H +LSGGQ++RV++A L+H P+L++ DEPT+ +D ++
Sbjct: 123 RAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 174 HLLYLA-ESGRTILITTH 190
+ LA E G TILI TH
Sbjct: 183 LMQKLAREQGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 33/173 (19%)
Query: 41 LLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITS--KKQLGFMPQQISLY---- 87
+LG SG GK+TLL+ + G+ L+G + ++++ Q L+
Sbjct: 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTV 425
Query: 88 --------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG--SLSGGQ 137
P+ T +E+ +L+++ A++L+AL G LSGG+
Sbjct: 426 RENLRLARPDATDEEL--------WAALERVG-LADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
++R++LA LL D +L+LDEPT +D A+E+ L A SGRT+++ TH
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELL-EDLLAALSGRTVVLITH 528
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-19
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNGGNIHLS----ITS 73
L + +K + +LLG +G GK+TL L +G+ ++ G I +
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 74 KKQLGFMPQ----QISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQALLHLNHFKR 128
+K +G + Q Q+ P T++E + + L G+S ++++++ E L+A+ +
Sbjct: 77 RKTVGIVFQNPDDQL-FAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK 133
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQ++RV++A L PE+++LDEPTSG+DP+ A +I L L + G TI+I+
Sbjct: 134 PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIS 193
Query: 189 THYIDEAKK-SHMIGLMRKGILLEESPPK 216
TH +D + + +M G +++E PK
Sbjct: 194 THDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
Length = 275 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----QLGFM 80
L+ + +T++ + +LG SGCGKTTLL+ I G G+I L + + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 81 PQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQ 138
Q L P + + + + GL + G+ Q E A + + L KR LSGGQ+
Sbjct: 76 FQNEGLLPWRNVQDNVAF-GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQR 134
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEA 195
+RV +A L +P+LL+LDEP +D E++ LL L E+G+ +L+ TH I+EA
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
|
Length = 255 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 2e-19
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+ V I +++G SG GK+TLL+ I +G +N + ++ + + Q+
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAEYLQALLHL-NHFKRKCGSLSGGQQRRV 141
+L+ T+ + I GL G+ L +EK + + ++ R LSGGQ++RV
Sbjct: 79 NNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKS 198
+LA L+ +L+LDEP S +DP++ EE+ + L E RT+L+ TH++ +A+
Sbjct: 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-19
Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 9 IRVENA---YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I VE+A + + + L + + V K + +++G G GK++LLS + G+ G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
++ + + ++ Q+ + TI E I + G + ++ Y + +
Sbjct: 61 SVSVP----GSIAYVSQEPWIQNG-TIRENILF-GKPF--------DEERYEKVI----- 101
Query: 126 FKRKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ C +LSGGQ++R+SLA + D ++ +LD+P S +D
Sbjct: 102 --KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159
Query: 165 PVIAEEIWNHLL--YLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ I+ + + L +T ++ TH + + I ++ G
Sbjct: 160 AHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-19
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 28/175 (16%)
Query: 38 IYSLLGASGCGKTTLL---------SCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88
I ++LG SG GK+TLL + TG + N I K+ GF+ Q LYP
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL--KRTGFVTQDDILYP 153
Query: 89 EFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNHFKRKCGS----------LSG 135
T+ E + + L+ ++ Q+ AE + + L L KC + +SG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT----KCENTIIGNSFIRGISG 209
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
G+++RVS+A +L +P LLILDEPTSG+D A + L LA+ G+TI+ + H
Sbjct: 210 GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-19
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 38 IYSLLGASGCGKTTLLSCITG-------QNVLNG-------GNIHLSITSKKQLGFMPQQ 83
I +L G SG GKT+L++ I G + LNG I L K+++G++ Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQD 84
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVS 142
L+P +T+ + Y G+ M + + + L ALL + H R G+LSGG+++RV+
Sbjct: 85 ARLFPHYTVRGNLRY-GMWKSM-----RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA 138
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT-ILITTHYIDE-AKKSHM 200
+ LL PELL++DEP + +D EI +L L + IL +H +DE + +
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198
Query: 201 IGLMRKGILLEESP 214
+ ++ G + P
Sbjct: 199 VVVLENGKVKASGP 212
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 4e-19
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ EN K +L L + + +++G +G GK+TLL + G+ G +
Sbjct: 322 LEFENVSK-GYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380
Query: 69 LSITSKKQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL-QALLHLNHF 126
+ ++G+ Q L P+ T+ E + +E YL +
Sbjct: 381 --VGETVKIGYFDQHRDELDPDKTVLEELSEG-----FPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
++ G LSGG++ R+ LA LL P LL+LDEPT NHL
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT------------NHL 470
|
Length = 530 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 4e-19
Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 9 IRVENAYKRHSSKLPY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TG 58
I ++N ++ K P+ L+ +T +K+ + ++G +G GK+T++ TG
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQI 110
Q ++ I ++ K++ + ++I L +PE+ TI++ I + + G + Q+
Sbjct: 67 QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA 126
Query: 111 KEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+K L L+ L ++ KR LSGGQ+RRV+LA + D L+LDEPT G+DP
Sbjct: 127 YKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186
Query: 169 EEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
E+ N L E + I++ TH +D+ + + + +M +G ++ P
Sbjct: 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
Length = 289 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 5e-19
Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 24/192 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L K+ + ++++ + +L+G SGCGK+T L I G+ +L+G +I+ S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLH--L 123
+K++G + QQ + +P +I + + Y +G+ L +I EK+ AL
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK 137
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K+ LSGGQQ+R+ +A L +PE+L++DEPTS +DP+ +I + L +
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 184 TILITTHYIDEA 195
TI+I TH + +A
Sbjct: 197 TIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
LD + +TV+ +++LLG +G GK+TL+ ++G + G I + S
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82
Query: 77 LG--FMPQQISLYPEFTIDEMIC-------YYGLIYGMSLQQIKEKA-EYLQALLHLNHF 126
G + Q++SL P ++ E I +GLI + ++ +A E L L
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLI---DRKAMRRRARELLARLGLDIDP 139
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
G LS Q++ V +A L D +LILDEPT+ + E +++ + L G I+
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199
Query: 187 ITTHYIDEAKK-SHMIGLMRKGILLEESPP 215
+H +DE + + I ++R G ++ P
Sbjct: 200 YISHRLDEVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 8e-19
Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 12/205 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSKKQL 77
V+D L +T+++ T+ +LLG SGCGKTT+L + GQ ++G ++ ++ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80
Query: 78 GFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSG 135
+ Q +L+P ++ E + Y GL + G+ ++ K++ + L+ L F+ R +SG
Sbjct: 81 CMVFQSYALFPHMSLGENVGY-GLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISG 139
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDE 194
GQQ+RV+LA L+ P++L+ DEP S +D + + + L + T L TH E
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 195 A-KKSHMIGLMRKGILLEESPPKVL 218
A S + +M KG +++ P+ L
Sbjct: 200 AFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 9e-19
Identities = 64/250 (25%), Positives = 127/250 (50%), Gaps = 32/250 (12%)
Query: 23 PY---VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH---LSITSK-- 74
PY + + ++ Y+++G +G GK+TL+ I G + ++IT K
Sbjct: 17 PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK 76
Query: 75 -KQLGFMPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
K + + ++I + +PE T++ I + + M+L ++K A + L+ L
Sbjct: 77 DKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA--HRLLMDLG- 133
Query: 126 FKRKCGSLS-----GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
F R S S GGQ R++++ L +P++++LDEPT+G+DP ++ L L
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 180 ESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSS-- 236
+ +TI++ +H ++E A+ + + +M++G ++ ++ PK L + K L D + L
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD--KKKLADWHIGLPEIV 251
Query: 237 KQQHDRIEQR 246
+ Q+D EQ+
Sbjct: 252 QLQYD-FEQK 260
|
Length = 286 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-18
Identities = 55/195 (28%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I N K + + LD + +++ L+G SG GK+TLL I +G
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 62 LNGGNI-HLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+NG ++ L + ++++G + Q L P+ + E + + + G+ ++I+++
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 117 LQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ L+H R + LSGG+Q+RV++A +++ P +LI DEPT +DP EI N L
Sbjct: 120 ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 176 LYLAESGRTILITTH 190
+ ++G T+++ TH
Sbjct: 180 KKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 1e-18
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 29/190 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC----------------ITGQNVLNGGNIHLSITSK 74
M ++++ I +L+GASGCGK+T L C I G++V N + L +
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL----R 78
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-------K 127
K +G + QQ +++ + +I E I Y ++GM + +E+A + L + F K
Sbjct: 79 KNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
+ +LSGGQQ+R+ +A L P+LL+LDEPTS +DP I+ + LL ++++
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIM 196
Query: 188 TTHYIDEAKK 197
TH + + K+
Sbjct: 197 VTHNMQQGKR 206
|
Length = 246 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-18
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 28/216 (12%)
Query: 8 AIRVENAYKRHSSKLPY----VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------- 55
A+ + Y+ + L Y L + +++ ++ + +++G SGCGK+T +
Sbjct: 6 AVMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV 65
Query: 56 ----ITGQNVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM-- 105
+TG+ NG NI +K +G + Q+ + +P+ +I + + Y I+G
Sbjct: 66 PNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKN 124
Query: 106 --SLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
LQ+I EK+ AL + + SLSGGQQ+R+ +A L +P++L++DEPTS
Sbjct: 125 KKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
+DPV +I +L L E TI+I TH + +A +
Sbjct: 185 ALDPVSTRKIEELILKLKEK-YTIVIVTHNMQQAAR 219
|
Length = 259 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-18
Identities = 56/193 (29%), Positives = 102/193 (52%), Gaps = 24/193 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHLS--- 70
LD + M + ++ + +++G SGCGK+T L CI G+ G N++ +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMS--LQQIKEKAEYLQALL-HLNH 125
+ ++++G + Q+ + +P+ D + YGL I G + + E++ AL +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVA--YGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 126 FKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
G LSGGQQ+R+ +A + DPE++++DEP S +DPV +I + + LAE T
Sbjct: 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YT 231
Query: 185 ILITTHYIDEAKK 197
++I TH + +A +
Sbjct: 232 VVIVTHNMQQAAR 244
|
Length = 285 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-18
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 37/232 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS-- 70
V+ + + + ++ +++L+G SGCGK+TLL + G+ L G NI+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMIC----YYGLIYGMSLQQIKEKAEYLQALLHL- 123
I ++++G + Q + +P TI + + GL+ S +++ E+ E+ L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLV--KSKKELDERVEWALKKAALW 136
Query: 124 ----NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
+ +LSGGQ++R+ +A L P++L++DEPT+ IDPV +I LL+
Sbjct: 137 DEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EELLFEL 195
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLE--------ESPPKVLLEKY 222
+ TI++ TH +A + S + + G L+E E+P L EKY
Sbjct: 196 KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKY 247
|
Length = 253 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 1e-18
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 34/212 (16%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLS----ITSK 74
+ VQ+ T+ +L+G SGCGKTT L I TG+ +L+G +I+ + +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ---------ALLH--L 123
+++G + Q+ + +P ++ + ++ G+ L I+++ ++ AL
Sbjct: 85 RRVGMVFQKPNPFPTMSV-----FDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ K LSGGQQ+R+ +A L +PE+L++DEPTS +DP I + + L +
Sbjct: 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-T 198
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
TI+I TH + +A + S G L+E P
Sbjct: 199 TIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 35/232 (15%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------------VLNGGNIHLS--- 70
L + + +++ + +L+G SGCGK+T L C+ N +L+G NI+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL----QALLH--- 122
+ ++++G + Q+ + +P+ +I E + Y G+ + +K+KA ++L H
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAY-----GLRVNGVKDKAYLAERVERSLRHAAL 135
Query: 123 LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ K + LSGGQQ+R+ +A L +PE+L++DEP S +DP+ ++I L++
Sbjct: 136 WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELIHE 194
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
++ TI+I TH + +A + S + G L+E P + + + K ED
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQTED 246
|
Length = 253 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-18
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 16 KRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73
+ K YV +D + ++++ L+G SGCGK+TL I G G I
Sbjct: 17 GKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----- 71
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGS 132
F + I+ + E + E L+ + L R
Sbjct: 72 -----FEGKDITKLSKEERRERV-----------------LELLEKVGLPEEFLYRYPHE 109
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHY 191
LSGGQ++R+ +A L +P+L++ DEP S +D + +I N L L E G T L +H
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ + S I +M G ++E P + +
Sbjct: 170 LSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 2e-18
Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 17/232 (7%)
Query: 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLNG 64
+V Y+ +S L + + V+K + +L+G +G GK+TLL + G + +
Sbjct: 6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65
Query: 65 GNIHLSITSK-KQLGFMPQQISL---YPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQA 119
G+I +S TSK K++ + +++ + +PE + E + +G + KEKAE + A
Sbjct: 66 GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA 125
Query: 120 L------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L +++ LSGGQ RRV++A L +PE+L+LDEPT+G+DP E+
Sbjct: 126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185
Query: 174 HLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+ +SG+T+++ TH +D+ A + + L+ KG ++ P + ++ +
Sbjct: 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
|
Length = 288 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-18
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 39/167 (23%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC---------ITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
V+ T+ +L+G SG GKTTLL ITG+ ++NG L ++ G++ QQ
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING--RPLDKNFQRSTGYVEQQ 87
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143
P T+ E + + L+ G+S++ Q++R+++
Sbjct: 88 DVHSPNLTVREALRFSALLRGLSVE----------------------------QRKRLTI 119
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+ L P +L LDEPTSG+D A I L LA+SG+ IL T H
Sbjct: 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-18
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 43/196 (21%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITSKKQ 76
VL L + +++ +LLG SG GK+TLL +T G+ L+G + L
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
+ + Q+ L+ T+ N+ R+ SGG
Sbjct: 77 ISVLNQRPYLFDT-TL------------------------------RNNLGRR---FSGG 102
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196
+++R++LA LL D +++LDEPT G+DP+ ++ + + + + +T++ TH++ +
Sbjct: 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIE 161
Query: 197 KSHMIGLMRKGILLEE 212
I + G ++ +
Sbjct: 162 HMDKILFLENGKIIMQ 177
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-18
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL---LSC----------ITGQNVLNGGNIHLSI 71
VL + + + + +++GASG GK+TL L C + GQ+V L+
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 72 TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKC 130
++ GF+ Q+ L T + + + G+ +Q +A+ L L L + + +
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQQ+RVS+A L++ ++++ DEPT +D EE+ L L + G T++I TH
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 191 YIDEAKKSHMIGLMRKGILLEESPPK 216
A ++ + +R G ++ P +
Sbjct: 203 DPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 4e-18
Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 32/245 (13%)
Query: 3 LKDKCAIRVENAYKRHSSKLP---YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59
L D +RV+N Y K L+ + T +K+ IY ++G SG GK+TL++ G
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 60 NVLNGGNIHL-SITSKKQLGFMPQQISL--------------------YPEF-----TID 93
G I + I + + +PE+ TI+
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 94 EMICYYGLIYGMSLQQIKEKAE-YLQAL-LHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ I + + G+ + K+ A+ YL + L ++ +R LSGGQ+RRV++A L P
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195
Query: 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA-KKSHMIGLMRKGILL 210
E+LI DEPT+G+DP E+ +L + +T+ + TH ++ + + + +M KG +L
Sbjct: 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
Query: 211 EESPP 215
+ P
Sbjct: 256 KTGTP 260
|
Length = 320 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 41 LLGASGCGKTTLLSCITG---QNVLNGGNIHLS---ITSKKQ---LGFMPQQISLYPEFT 91
++G+SG GKTTL++ + + V G++ L+ I +K+ ++ Q P T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 92 IDEMICYYG-LIYGMSLQQIKEKAEYLQALLH-LNHFKRKCG-----------SLSGGQQ 138
+ E + + L + + KEK E + +L L RKC LSGG++
Sbjct: 116 VREHLMFQAHLRMPRRVTK-KEKRERVDEVLQALG--LRKCANTRIGVPGRVKGLSGGER 172
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS 198
+R++ A LL DP LL DEPTSG+D +A + L LA+ G+TI+ T H S
Sbjct: 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH----QPSS 228
Query: 199 HMIGLMRKGILLEE 212
+ L K IL+ E
Sbjct: 229 ELFELFDKIILMAE 242
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-18
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 38 IYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITS----KKQLGFMP 81
+ +++G SGCGK+T L I TG + +G +I+ T +K++G +
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 82 QQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLH--LNHFKRKCGSLSG 135
Q+ + +P+ +I + I Y ++G++ L++I EK+ AL + + LSG
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQQ+R+ +A TL +PE+L+LDEPTS +DP +I + + L S TI+I TH + +A
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTHNMQQA 244
Query: 196 KK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
+ S +G+L+E +P L + ED
Sbjct: 245 SRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTED 279
|
Length = 286 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-18
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 21/126 (16%)
Query: 50 TTLLSCITGQNVLNGGNIHLSITS----------KKQLGFMPQQISLYPEFTIDEMICYY 99
+TLL ITG G I L +K++G + Q L+PE T+ E + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 100 GLIYGMSLQQIKEKAEYLQAL--LHLNHFKRK--CGSLSGGQQRRVSLAITLLHDPELLI 155
A +AL + L F + G+LSGGQ++RV++A LL P+LL+
Sbjct: 61 LRDKEA-------DARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 156 LDEPTS 161
LDEPT+
Sbjct: 114 LDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-18
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 48/209 (22%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN R+ P VL + +++ +++G SG GK+TL I G G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 69 L---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L I+ +G++PQ L+ +I E I
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------------------- 96
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YL 178
LSGGQ++R+ LA L +P +L+LDEP S +D V E N + L
Sbjct: 97 -------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAAL 142
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKG 207
+G T ++ H + + I ++ G
Sbjct: 143 KAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-18
Identities = 60/216 (27%), Positives = 119/216 (55%), Gaps = 25/216 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLS-------CITGQNVLNGGNIH-LSITS-KK 75
+L L +T+ +L+G+SGCGK+T++S +G+ +L+G +I L++ +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH------LNHFKRK 129
Q+G + Q+ L+ + TI E I Y G + ++++E A+ +A +H + +
Sbjct: 78 QIGLVSQEPVLF-DGTIAENIRY-GK-PDATDEEVEEAAK--KANIHDFIMSLPDGYDTL 132
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A LL +P++L+LDE TS +D +E++ L A GRT
Sbjct: 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD-AESEKLVQEALDRAMKGRTT 191
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G ++E+ L+ +
Sbjct: 192 IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-18
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS---KKQLGF 79
L + +T+Q+ SL+G SGCGK+TLL+ I+G G + L IT + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 80 MPQQISLYPEFTIDEMICYY--GLIYGMSLQQIKEKAEYLQALLHLNHFKRK-CGSLSGG 136
Q SL P T+ E I ++ +S + + E AL+ L K G LSGG
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGG 118
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEA 195
++RV++A L P++L+LDEP +D + + L+ + E T+L+ TH +DEA
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA 178
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-18
Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 22/225 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLN 63
IRVE+ R+ Y L + +V + +++G +G GK+TL + G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 64 GGNIHLSITS----KKQLGFMPQQISLYP--EF---TIDEMICYYGLI-YGMSLQQIKEK 113
G + LS + ++Q+G + Q P +F T+ + + + GL G+ +++ E+
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQN----PDNQFVGATVQDDVAF-GLENIGVPREEMVER 120
Query: 114 AEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ + + F R+ LSGGQ++RV++A L P+++ILDE TS +DP E+
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
Query: 173 NHLLYLAESGR-TILITTHYIDEAKKSHMIGLMRKGILLEESPPK 216
+ L E T+L TH +DEA ++ + +M KG +LEE P+
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (200), Expect = 8e-18
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 32/221 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----------VLNGG----NIHL 69
VLD++ M + SL+G +G GKTT L + N VL GG N
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY---LQALLH---- 122
+ ++++G + Q+ + +P +D ++ G+ ++ + E+ QA L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLA------GVRAHKLVPRKEFRGVAQARLTEVGL 149
Query: 123 LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ K + LSGGQQ+ + LA TL +PE+L+LDEPTS +DP E+I + L
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
A+ I++T + A+ S L G L+EE P + L
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 9e-18
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 20/219 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ VEN L + ++Q +++G SG GK+TL I G G++
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 69 LSITSKKQ---------LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
L KQ +G++PQ + L+P T+ E I +G ++I E A+
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG--ENADPEKIIEAAKLAGV 433
Query: 120 ---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+L L + + G +LSGGQ++R++LA L DP+L++LDEP S +D + +
Sbjct: 434 HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILL 210
N + L G T+++ TH I +++ G +
Sbjct: 494 ANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 9e-18
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 27/233 (11%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------- 55
K++ I EN ++ L+ + + + K++I +L+G SGCGK+T L
Sbjct: 3 KNEAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 60
Query: 56 ----ITGQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS- 106
I G + G NI+ + + ++++G + Q + + +I + I Y I+G
Sbjct: 61 EGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKD 119
Query: 107 ---LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
L +I E++ AL + + SLSGGQQ+R+ +A TL +P ++++DEPTS
Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213
+DP+ +I ++ L ES TI+I TH + +A + S G + EES
Sbjct: 180 ALDPISTGKIEELIINLKES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231
|
Length = 254 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-------VLNG---GNIHLSITSK 74
+L L V ++++G +G GKTTLLS +TG++ L G G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 75 KQLGF--MPQQISLYPEFTIDEMIC--YY---GLIYGMSLQQIKEKAEYLQALLHLNHFK 127
K++G T+ +++ ++ G+ + A++L LL H
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 128 -RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRT 184
R GSLS G+QRRV +A L+ DPELLILDEP G+D + E++ N L LA
Sbjct: 166 DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPA 225
Query: 185 ILITTHYIDEA 195
+L TH+ +E
Sbjct: 226 LLFVTHHAEEI 236
|
Length = 257 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 61/237 (25%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I E+ R+ P +LD + + ++ + ++G SG GK+TL I G+ +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 62 LNGGNIHLSITS--KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G ++ L+ + ++Q+G + Q+ L+ +I + I GMS++++ E A+ A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRDNIALAD--PGMSMERVIEAAKLAGA 117
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
+ F + LSGGQ++R+++A L+H+P +LI DE TS +D
Sbjct: 118 ----HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD-YE 172
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
+E ++ +GRT++I H + K + I +M KG ++E+ LL + +
Sbjct: 173 SEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN + K P VL + +++ +++G SG GK+TL+ + G I
Sbjct: 329 IEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 69 L------SITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ I+ K++G + Q L+ TI E I G + ++I+E + A
Sbjct: 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENI-ALGRPD-ATDEEIEEALKLANA 444
Query: 120 ---LLHL-NHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ +L + + G LSGGQ++R+++A LL +P +LILDE TS +D I
Sbjct: 445 HEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALI 504
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ L L + GRT LI H + K + I ++ G ++E + LL K
Sbjct: 505 QDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553
|
Length = 567 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL----SITSKKQLGFMPQQISL 86
++ K + LLG +G GKTTLL I G G + + + +G++PQ+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR--- 57
Query: 87 YPEFTIDEMICYYGLIYG-----MSLQQIKEKAEYL---QAL--LHLNHF-KRKCGSLSG 135
EF D I + + + A++ AL + L R G LSG
Sbjct: 58 -HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
GQ++RV +A L P +L+LDEP +G+D E + + LA +G IL+TTH + +A
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-17
Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 26/232 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I EN + P VL + T+ +++G SG GK+T+L + +G +
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G +I +++ S ++ +G +PQ L+ + TI I Y + +++ E A+ A
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGYNIRYGRP--DATDEEVIEAAK--AA 114
Query: 120 LLH--LNHFKRKCGS--------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+H + F + LSGG+++RV++A +L +P +L+LDE TS +D
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
EI L +++ GRT ++ H + + I +++ G ++E + LL K
Sbjct: 175 EIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 3e-17
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 24/222 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLS----ITSK 74
M ++++ +++G SGCGK+T+L I TG+ +L+ +I+ ++ +
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84
Query: 75 KQLGFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----NHFKR 128
+++G + Q+ + +P +I D +I Y L ++ + E E + L + K
Sbjct: 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS 144
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
LSGGQQ+R+ +A T+ PE++++DEP S +DP+ +I + L E TI+I
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIV 203
Query: 189 THYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TH + +A + S G L+E K + K ED
Sbjct: 204 THNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTED 245
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 4e-17
Identities = 58/207 (28%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI------HLSITSKKQL 77
+ +++ I+ ++G SG GK+T++ + GQ +++G +I L +K++
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---NHFKRKCGSLS 134
+ Q +L P T+ + + + G++ ++ +EKA L AL + N+ LS
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA--LDALRQVGLENYAHSYPDELS 166
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYID 193
GG ++RV LA L +P++L++DE S +DP+I E+ + L+ L A+ RTI+ +H +D
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226
Query: 194 EAKK-SHMIGLMRKGILLEESPPKVLL 219
EA + I +M+ G +++ P +L
Sbjct: 227 EAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-17
Identities = 52/186 (27%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNGGNIHLS----ITSK 74
L + + ++K + ++LG +G GK+TL L +G+ + +G I S + +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQ----QIKEKAEYLQALLHLNHFKRK 129
+ +G + Q P+ + Y + +G ++L+ +++++ + + H K K
Sbjct: 82 ESVGMVFQD----PDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK 137
Query: 130 -CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILI 187
LS GQ++RV++A L+ +P++L+LDEPT+G+DP+ EI L+ + + G TI+I
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 188 TTHYID 193
TH ID
Sbjct: 198 ATHDID 203
|
Length = 283 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 5e-17
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHL---- 69
L + M V + + +L+G SGCGK+T L C G+ +L+ N+++
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 70 --SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI-KEKAE-YLQALLHLNH 125
I + ++ + Q+ + +P+ +I E + Y I G+ + I +E+ E L+ +
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 126 FKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K + G +LSGGQQ+R+ +A L DPE+L+ DEPTS +DP+ I L+ ++
Sbjct: 151 VKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKN 209
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TILI TH + +A + S M G L+E + K K ED
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTED 258
|
Length = 265 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 6e-17
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 39/222 (17%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIH---- 68
VLD + + + +TI +L+G SG GK+TLL ++G+ L+G +I
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 69 LSITSKKQLGF-MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL---- 123
+ + + Q+ F +P I P +I E + G+ L ++ + + LQ +
Sbjct: 78 IELRRRVQMVFQIPNPI---PNLSIFENVAL-----GLKLNRLVKSKKELQERVRWALEK 129
Query: 124 --------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ G LSGGQQ+R+ +A L PE+L+ DEPT+ +DP +I +
Sbjct: 130 AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216
L L + TI++ TH+ +A + S + + KG ++E P +
Sbjct: 190 LELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
|
Length = 250 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 7e-17
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 32/192 (16%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------QNVLNGGNI-HLSITSK 74
+L + +TV++ +++++G +G GK+TL I G + + +G +I LS +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 75 KQLG-FMPQQISLYP---------EFTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLH 122
+ G F+ Q YP +F M I ++++KEKAE LL
Sbjct: 79 ARAGIFLAFQ---YPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE----LLG 131
Query: 123 LN--HFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L+ +R SGG+++R + LL +P+L ILDEP SG+D + + + L
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 180 ESGRTILITTHY 191
E GR +LI THY
Sbjct: 192 EEGRGVLIITHY 203
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 8e-17
Identities = 60/207 (28%), Positives = 113/207 (54%), Gaps = 25/207 (12%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---KQLGFMPQQI 84
+T++ + + +G +G GK+T++ + G +V G++ + ITS K + + +++
Sbjct: 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKV 87
Query: 85 SLYPEF--------TIDEMICYYGLIYGMSLQQIKEKAEYL-QALLHL-----NHFKRKC 130
L +F T+ + + + +G+S +E+AE L + L L + F++
Sbjct: 88 GLVFQFPESQLFEETVLKDVAFGPQNFGVS----QEEAEALAREKLALVGISESLFEKNP 143
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGGQ RRV++A L +P++L+LDEPT+G+DP +E+ L +SG TI++ TH
Sbjct: 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
Query: 191 YIDE-AKKSHMIGLMRKGILLEESPPK 216
+D+ A + + ++ KG L+ PK
Sbjct: 204 LMDDVANYADFVYVLEKGKLVLSGKPK 230
|
Length = 280 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 8e-17
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 29/250 (11%)
Query: 3 LKDKCAIR-VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---- 57
+ K IR V Y +H VL + M + I +++G SGCGK+TLL +
Sbjct: 1 MDPKIKIRGVNFFYHKHQ-----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND 55
Query: 58 --------GQNVLNGGNIHLS----ITSKKQLGFMPQQISLYPEFTIDEMIC---YYGLI 102
G +L+ NI+ + +K++G + QQ + +P+ D + G
Sbjct: 56 IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTT 115
Query: 103 YGMSLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
L ++ EK+ AL ++ + +LSGGQQ+R+ +A L +PE++++DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLL 219
S +DPV I L+ + TI I TH + + A+ S G + G L+E +
Sbjct: 176 SALDPVSTMRI-EELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
Query: 220 EKYNMKSLED 229
+ K ED
Sbjct: 235 SRPRDKRTED 244
|
Length = 251 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
AI EN R++ P VL L + ++ ++G SG GK+TL + GQ
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514
Query: 61 VLNGGNIHLS--ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+++G ++ ++ ++Q+G + Q+ L+ +I + I G + + A+
Sbjct: 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAG 571
Query: 119 ALLHLNHFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A ++ + K +LSGGQ++R+++A L+ +P +LI DE TS +D
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I ++ + GRT++I H + + I ++ KG + E + LL
Sbjct: 632 IMRNMREICR-GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 10/220 (4%)
Query: 9 IRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN- 66
R++ K + L + + K ++G +G GK+TLL I G G
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 67 -IHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
+ + +LG PE T E I GLI G++ ++I EK + + L
Sbjct: 85 KVTGKVAPLIELG-----AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD 139
Query: 126 FK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
F + + S G R++ ++ +P++L+LDE + D E+ L L E +T
Sbjct: 140 FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199
Query: 185 ILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223
I++ +H + K+ + G + E P+ ++ Y
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 62/244 (25%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 9 IRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
I+V N KR+ S + +D + + V++ I+ ++G SG GKTTL I G G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 66 NIHLSI----------------TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109
+++ + +K+ +G + Q+ LYP T+ + L + L+
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLD-----NLTEAIGLEL 394
Query: 110 IKEKAEYLQALLHL-----------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158
E A ++A++ L + LS G++ RV+LA L+ +P ++ILDE
Sbjct: 395 PDELAR-MKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 159 PTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216
PT +DP+ ++ + +L E +T +I +H +D LMR G +++ P+
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 217 VLLE 220
++E
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 2e-16
Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLS--------- 70
+L + + + K+++ +L+G SGCGK+T + + N L + G+I+L
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEK--AEYLQALLHLNH 125
+ +K++G + Q+ + +P+ D + YGL I+G + E+ E L+A +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVA--YGLRIHGEDDEDFIEERVEESLKAAALWDE 135
Query: 126 FKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K K LSGGQQ+R+ +A T+ PE++++DEP S +DP+ +I + L++ +
Sbjct: 136 VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKE 194
Query: 182 GRTILITTHYIDEAKK 197
TI+I TH + +A +
Sbjct: 195 DYTIVIVTHNMQQATR 210
|
Length = 250 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 2e-16
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 75/191 (39%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +EN K + KL +L + +T+ L+G +G GK+TLL I G+ + G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 69 LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKR 128
T K +G+ Q
Sbjct: 59 WGSTVK--IGYFEQ---------------------------------------------- 70
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL-------L--YLA 179
LSGG++ R++LA LL +P LL+LDEPT NHL L L
Sbjct: 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPT------------NHLDLESIEALEEALK 114
Query: 180 ESGRTILITTH 190
E T+++ +H
Sbjct: 115 EYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 31/217 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITSKKQ 76
+L + +T++ ++ +++G SG GK+TL + +G+ +LNG ++ + + +Q
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 77 L-GFMPQQISLY-------------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
++PQ+ ++ + DE + + +IK+ E +
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDE------IWAACEIAEIKDDIENMPLGYQ 602
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ S+SGGQ++R++LA LL D ++LILDE TS +D + ++I N+LL L +
Sbjct: 603 -TELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-- 659
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
+TI+ H + AK+S I ++ G ++E+ LL
Sbjct: 660 KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-16
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 28/238 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+R + KR VLD L +V +L+G SG GK+T+L + ++ G I
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 69 LSITS----------------------KKQLGFMPQQISLYPEFT-IDEMICYYGLIYGM 105
+ + ++G + Q +L+P T +D + L+ GM
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 106 SLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ + +++A L ++ L + LSGGQQ+RV++A L P++++ DE TS +D
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
Query: 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
P + E+ N + LA E T+L+ TH + A++ + + KG ++E+ P +
Sbjct: 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 4e-16
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQLGFMPQ 82
V+ I + G G G+T L + G G I L S + G
Sbjct: 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG---- 76
Query: 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVS 142
I+ PE E GL+ +S + E AL L LSGG Q++V
Sbjct: 77 -IAYVPEDRKRE-----GLVLDLS---VAENI----ALSSL---------LSGGNQQKVV 114
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA-KKSHMI 201
LA L DP +LILDEPT G+D EI+ + LA++G+ +L+ + +DE I
Sbjct: 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRI 174
Query: 202 GLMRKG 207
+M +G
Sbjct: 175 LVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-16
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 9 IRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
IR EN +Y +L LD + + ++ + ++LG +G GK+TLL ++G+ + G +
Sbjct: 2 IRAENLSYSLAGRRL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 68 H-----LSITSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L+ ++L +PQ SL FT+ E++ G I S ++ +E
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVV-QMGRIPHRSGREPEEDERIAA 117
Query: 119 ALL---HLNHF-KRKCGSLSGGQQRRVSLAITL--LHDPEL----LILDEPTSGIDPVIA 168
L L+ R +LSGG+Q+RV LA L L P L LDEPTS +D
Sbjct: 118 QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 169 EEIWNHLLYLAESGRTILITTHYID-EAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
LA G +L H ++ A+ + I L+ +G ++ P+ +L ++L
Sbjct: 178 HHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL---TDETL 234
Query: 228 EDVF 231
E V+
Sbjct: 235 ERVY 238
|
Length = 259 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 6e-16
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 40/223 (17%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITS-KK 75
VL L + ++ +LLG +GCGK+TLL +T G+ +LNG I S + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414
Query: 76 QLGFMPQQISLY------------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH- 122
+ + Q++ L+ P + + +I LQQ+ L+ LL
Sbjct: 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALI--------EVLQQVG-----LEKLLED 461
Query: 123 ---LNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
LN + + G LSGG+QRR+ +A LLHD LL+LDEPT G+D +I L
Sbjct: 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
A+ +T+L+ TH + ++ I +M G ++E+ + LL +
Sbjct: 522 AQ-NKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563
|
Length = 574 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 7e-16
Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 35/263 (13%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ + K++S VL + T+ +++LLG +G GK+TL+ I G + G
Sbjct: 9 PPLLCARSISKQYSGVE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 66 NI--------HLSITSKKQLG--FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
+ L+ QLG +PQ+ L+P ++ E I + L + + +
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF-------GLPKRQASMQ 119
Query: 116 YLQALL-----HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
++ LL L+ GSL ++ V + L+ D +LILDEPT+ + P E
Sbjct: 120 KMKQLLAALGCQLD-LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER 178
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
+++ + L G I+ +H + E ++ + I +MR G + L K S +D
Sbjct: 179 LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI-------ALSGKTADLSTDD 231
Query: 230 VFLLLSSKQQHDRIEQRRKSFLW 252
+ ++ + + +K LW
Sbjct: 232 IIQAITPAAREKSLSASQK--LW 252
|
Length = 510 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 7e-16
Identities = 57/208 (27%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL------SITSKKQLGF 79
LD + +++ + +L+G +G GK+TL+ + G I + T K L
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 80 MPQQISL---YPEF-----TIDEMICYYGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRK 129
+ +++SL +PE T+ + + + +G S + KEKA ++L+ + L + +
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS 142
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
LSGGQ RRV++A + ++PE+L LDEP +G+DP +E+ ++G T+++ T
Sbjct: 143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202
Query: 190 HYIDE-AKKSHMIGLMRKGILLEESPPK 216
H +D+ A+ + + ++ G L++ + PK
Sbjct: 203 HNMDDVAEYADDVLVLEHGKLIKHASPK 230
|
Length = 287 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-16
Identities = 52/178 (29%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIHLSITSKKQ- 76
+ L T+ + G +G GKTTLL + G + G I S Q
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-QIKEKAEY--LQALLHLNHFKRKCGSL 133
L ++ Q + E T E + ++ +G I E L L L G L
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-----PVGQL 131
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTH 190
S GQQRRV+LA L L ILDEP + +D + L+ A G +L+TTH
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIVLLTTH 188
|
Length = 209 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 8e-16
Identities = 49/196 (25%), Positives = 99/196 (50%), Gaps = 24/196 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLL------------SCITGQNVLNGGNIHLSI 71
+ L + M +++ ++ + +G SGCGK+T L + + G+ ++G NI+
Sbjct: 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76
Query: 72 TS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEYLQALLHL--- 123
+K +G + Q+ + +P+ +I E + Y + G+ I+++ E L
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE 135
Query: 124 --NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
+ K +LSGGQQ+R+ +A + P +L++DEP S +DP+ ++ L++ +
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKK 194
Query: 182 GRTILITTHYIDEAKK 197
TI+I TH + +A +
Sbjct: 195 DYTIVIVTHNMQQAAR 210
|
Length = 250 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 55/248 (22%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I N + + LD + +T++ +++G G GK+TLL + G G++
Sbjct: 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 68 HLSITSKKQL---------GFMPQQISLYPEFTIDEMICYYG-----LIYGMSLQQIKEK 113
L +Q+ G++PQ L+ YG + G +
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLF-----------YGTLRDNIALGAPY---ADD 568
Query: 114 AEYLQAL----------LHLNHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEP 159
E L+A H + + G SLSGGQ++ V+LA LL DP +L+LDEP
Sbjct: 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628
Query: 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGL------MRKGILLEES 213
TS +D +EE + L +G+T+++ TH ++ ++ L M G ++ +
Sbjct: 629 TSAMDNR-SEERFKDRLKRWLAGKTLVLVTH------RTSLLDLVDRIIVMDNGRIVADG 681
Query: 214 PPKVLLEK 221
P +LE
Sbjct: 682 PKDQVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-16
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-LSITSKKQL-----GFMPQQIS 85
TV +I +L+G +G GK+TL + G L G I L +++ L ++PQ
Sbjct: 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEE 88
Query: 86 L---YPEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLH---LNHFKRKCGSLSGGQQ 138
+ +P D M+ YG + + + +++ AL + R+ G LSGGQ+
Sbjct: 89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS 198
+RV LA + ++++LDEP +G+D I + L L + G+T+L++TH + +
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208
Query: 199 HMIGLMRKGILLEESPPKVLLEKYNMK 225
+M KG +L P + N++
Sbjct: 209 CDYTVMVKGTVLASGPTETTFTAENLE 235
|
Length = 272 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 9e-16
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 32/222 (14%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGG------------NIH----LSITSKKQLGFMP 81
I + +G SGCGK+TLL C N L G NI+ S+ ++Q+G +
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107
Query: 82 QQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQ 137
Q+ + +P+ +I E I + G +L ++ E + A+ + K K +LSGGQ
Sbjct: 108 QRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
Q+R+ +A + P++L++DEP S +DP+ ++ L L E TI++ TH + +A +
Sbjct: 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTHNMQQASR 225
Query: 198 -SHMIGLM---------RKGILLEESPPKVLLEKYNMKSLED 229
+ R+G L+E SP + + K +
Sbjct: 226 VADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEARE 267
|
Length = 274 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 1e-15
Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 59/208 (28%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + KR LD + ++V++ +++LLG +G GK+TL+ ++G + G I
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 69 L--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ S ++ G I ++Y +S
Sbjct: 59 VDGKEVSFASPRDARRAG-----I---------------AMVYQLS-------------- 84
Query: 121 LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
G+++ V +A L + LLILDEPT+ + P E ++ + L
Sbjct: 85 --------------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA 130
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKG 207
G ++ +H +DE + + + ++R G
Sbjct: 131 QGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 2e-15
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 2 DLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
D + N + ++ +VL L + ++++ + + +G SGCGK+T L + N
Sbjct: 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133
Query: 62 LNGGNIH----------------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105
L G H S+ + ++G + Q+ + + E +I + + Y G+
Sbjct: 134 LIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGI 192
Query: 106 S----LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159
+ L++I EK+ AL + + +LSGGQQ+R+ +A + +PE+L++DEP
Sbjct: 193 NDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252
Query: 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
TS +DP+ +I +L L + +I+I TH + +A++
Sbjct: 253 TSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQR 289
|
Length = 329 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 22/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
+ N R+ + LD + + ++ +L+G SG GK+TL++ I GQ +
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE--YL 117
L+G ++ ++ S ++Q+ + Q + L+ + TI I Y G +I+ Y
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAY-GRTEQADRAEIERALAAAYA 448
Query: 118 QAL-------LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
Q L LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 449 QDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERL 507
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
+ L L + GRT L+ H + +K+ I +M G ++E LL
Sbjct: 508 VQAALERLMQ-GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 30/231 (12%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-------- 70
S LD + + V+K +LG +G GK+T+ + + + G +++
Sbjct: 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78
Query: 71 ----ITSKKQLGFM--PQQISLYPEFTIDEMICYYG---LIYGMSLQQIKEKAEYLQALL 121
I +K + F QI TI E +G L G+ ++I+E+ + +L
Sbjct: 79 NLWDIRNKAGMVFQNPDNQIVA----TIVEEDVAFGPENL--GIPPEEIRERVDE--SLK 130
Query: 122 HLNHFKRKCGS---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ ++ + + LSGGQ++RV++A L PE +I DEPT+ +DP E+ N + L
Sbjct: 131 KVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190
Query: 179 -AESGRTILITTHYIDEAKKSHMIGLMRKG-ILLEESPPKVLLEKYNMKSL 227
+ G TI++ THY++EA ++ I +M G +++E +P ++ E MK +
Sbjct: 191 NKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
Length = 280 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC---------ITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
V+ T+ +L+GASG GKTTLL+ ITG + L G L + ++ +G++ QQ
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG-RPLDSSFQRSIGYVQQQ 844
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQ-----IKEKAEYLQA---LLHLNHFKRK------ 129
P T+ E L + L+Q EK EY++ LL + +
Sbjct: 845 DLHLPTSTVRE-----SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG 899
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLI-LDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
G L+ Q++R+++ + L+ P+LL+ LDEPTSG+D A I + LA+ G+ IL T
Sbjct: 900 EG-LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT 958
Query: 189 TH 190
H
Sbjct: 959 IH 960
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-15
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 12/132 (9%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSIT-------SKKQLGFMPQQISLYPEFTI-DE 94
G SGCGK+TLL I G + G++ + +++ +G + Q +LYP ++ +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95
Query: 95 MICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPE 152
M +GL + G ++I ++ + +L L H RK +LSGGQ++RV++ TL+ +P
Sbjct: 96 M--SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 153 LLILDEPTSGID 164
+ +LDEP S +D
Sbjct: 154 VFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-15
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 21/207 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL------- 77
+L + + V++ +++G SG GK+TLL+ + G + + G + L +L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 78 ------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-EYLQAL---LHLNHFK 127
GF+ Q L P T E + + G S + A L+A+ L H+
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTIL 186
LSGG+Q+RV+LA P++L DEPT +D ++I + L L E G T++
Sbjct: 145 ---AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 187 ITTHYIDEAKKSHMIGLMRKGILLEES 213
+ TH A + +R G L+E++
Sbjct: 202 LVTHDPQLAARCDRQLRLRSGRLVEDA 228
|
Length = 228 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-15
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+ + L T+ + G +G GKTTLL + G + G + + T+ + P +
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 85 SLY--------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136
LY PE + E + ++ I+G Q+ E A L LS G
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAAVGLTGFED--LPAAQLSAG 131
Query: 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY---ID 193
QQRR++LA L L ILDEPT+ +D + L G +L+TTH +
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
Query: 194 EAKKSHM 200
EA++ +
Sbjct: 192 EARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-15
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL------- 77
LD + +T++ +++G G GK+TLL + G G++ L T +QL
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 78 --GFMPQQISLYPEF--TIDEMICYYGLIYGMSLQQIKEKAEYLQ----ALLHLNHFKRK 129
G++PQ ++L F T+ + I + ++I AE H N +
Sbjct: 79 NIGYVPQDVTL---FYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQ 133
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++ V+LA LL+DP +L+LDEPTS +D + +EE L +T+
Sbjct: 134 IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERLKERLRQLLGDKTL 192
Query: 186 LITTH 190
+I TH
Sbjct: 193 IIITH 197
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-15
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT------------------GQNVLNGGNIHLSIT 72
M ++K + +L+G SGCGK+T L I G N+L NI++ +
Sbjct: 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL-DSNINV-VN 99
Query: 73 SKKQLGFMPQQISLYPEF---TIDEMICYYGLIYGMSLQQIKEKAEYLQALLH--LNHFK 127
++++G + Q+ + +P+ I + Y G L +I E++ AL +
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQQ+R+ +A TL P +L+LDEP S +DP+ +I + L E +I+I
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIII 218
Query: 188 TTHYIDEA 195
TH + +A
Sbjct: 219 VTHNMQQA 226
|
Length = 268 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 41 LLGASGCGKTTLLSCI-------TGQNVLNGGNIHLS--ITSKKQLGFMPQQISLYPEFT 91
L G +G GKTTLL I G L+GG+I + LG + ++ P T
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG---HRNAMKPALT 89
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEY--LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
+ E + ++ G I E L L HL G LS GQ+RRV+LA L+
Sbjct: 90 VAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALARLLVS 144
Query: 150 DPELLILDEPTSGIDP----VIAEEIWNHLLYLAESGRTILITTHY---IDEAKKSHM 200
+ + ILDEPT+ +D + AE I HL G ++ TH + A++ +
Sbjct: 145 NRPIWILDEPTAALDAAAVALFAELIRAHL----AQGGIVIAATHIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 5e-15
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI----------TGQNVLNGGNIHLSITSK 74
+L + T+ K I +L+G SGCGK+TLLS + TG+ LN + + ++
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYY--GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGS 132
+Q+G + Q L+P ++ + + + + G + + A L F + +
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA--FHQDPAT 134
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ+ RV+L LL P+ L+LDEP S +D
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-15
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 21 KLPYVLDKLCM----TVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHL 69
+ ++ L M TV++ ++LG SG GK+TLL+ I +G LNG +
Sbjct: 6 DITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT 65
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL---QQIKEKAEYLQALLHLNHF 126
+ S++ + + Q+ +L+ T+ + I GL G+ L Q+ K A Q + +
Sbjct: 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGL-GLNPGLKLNAAQREKLHAIARQMGIE-DLL 123
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR--- 183
R G LSGGQ++RV+LA L+ + +L+LDEP S +DP + +E+ L +++ +
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM---LTLVSQVCQERQ 180
Query: 184 -TILITTHYIDEA 195
T+L+ +H +++A
Sbjct: 181 LTLLMVSHSLEDA 193
|
Length = 232 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-15
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 28/207 (13%)
Query: 8 AIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-- 64
AI+V N ++ + K +L+ + M + +S + +++G SGCGK+T L C+ N L
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 65 ---GNIHL---SITSKK-QLGFMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
G + +I ++ L + +Q+S+ +P+ + M Y + YG+ + + K E
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 117 -------LQALLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165
L+ + K K LSGGQQ+R+ +A L P++L++DEP G+DP
Sbjct: 124 DDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 166 VIAEEIWNHLLY--LAESGRTILITTH 190
+ + ++ L+ S T++I +H
Sbjct: 184 IASMKV-ESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-15
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 38/212 (17%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS----ITSKKQ 76
+ + T+ + +G SGCGK+T L C +TG+ L+G +I+ + + +
Sbjct: 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRAR 101
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS-----LQQIKEKAEYLQALLHLNHFKRKCG 131
+G + Q+ + +P+ +I E + Y I+G++ L +I E + L+ K +
Sbjct: 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETS--LRKAGLWEEVKDRLH 158
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA----EEIWNHLLYLAESGR 183
LSGGQQ+R+ +A + PE++++DEP S +DP IA EE+ + L
Sbjct: 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IATAKVEELIDEL----RQNY 213
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
TI+I TH + +A + S G L+E
Sbjct: 214 TIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 85 SLYPEFTIDEMICYYGLI--YGMSLQQIKEKAEYLQALLHLNHFKRKCGS----LSGGQQ 138
SL P TI + + L G+S + +A L L+ + +++ + LSGGQ+
Sbjct: 105 SLNPLHTIGKQL-AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163
Query: 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK 197
+RV +A+ L ++P+LLI DEPT+ +D + +I + L L AE G IL TH + +K
Sbjct: 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
Query: 198 -SHMIGLMRKGILLEESPPKVLLE 220
+ + +M+ G ++E + L
Sbjct: 224 FADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 8e-15
Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 36/216 (16%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSIT 72
+L + + + K + + +G SGCGK+T L C + G+ ++G +++ T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 73 S----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-----LQQIKEKA-------EY 116
+ + ++G + Q+ + +P+ +I + + Y ++G++ L +I EK+ E
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L L + F+ LSGGQQ+R+ +A + P +L++DEP S +DPV I N L+
Sbjct: 139 LGDRLKDSAFE-----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LI 192
Query: 177 YLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211
+ TI++ TH + +AKK S + + G ++E
Sbjct: 193 QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 9e-15
Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 40/204 (19%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSI 71
+ L + + + ++ + +++G SGCGK+T + + TG+ + NI
Sbjct: 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97
Query: 72 TSKKQL----GFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKA-------EY 116
S ++L G + Q+ + +P+ +I + + Y I+G+ L +I EK+ +
Sbjct: 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA---EEIWN 173
L+ LH N + LSGGQQ+R+ +A L +P+++++DEPTS +DP+ EE+
Sbjct: 157 LKDRLHDNAY-----GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 174 HLLYLAESGRTILITTHYIDEAKK 197
L + +I+I TH + +A +
Sbjct: 212 EL----KKDYSIIIVTHNMQQAAR 231
|
Length = 271 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITS-----KKQLGFMP---QQI 84
I L+GA G+T L + G + G I L I S K + ++P +
Sbjct: 290 IAGLVGA---GRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 85 SLYPEFTIDEMICYYGLI-----YGMSLQQIKEKAEYLQALLHL--NHFKRKCGSLSGGQ 137
L + +I E I L + ++ + AE L + ++ G+LSGG
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406
Query: 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIA-EEIWNHLLYLAESGRTILITTHYIDEA- 195
Q++V LA L DP++LILDEPT GID V A EI+ + LA G+ IL+ + + E
Sbjct: 407 QQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMISSELPELL 465
Query: 196 KKSHMIGLMRKGILLEESPPK 216
S I +MR+G ++ E +
Sbjct: 466 GLSDRILVMREGRIVGELDRE 486
|
Length = 500 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-14
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS------KK 75
+L+ + ++V+ ++ G SGCGK+TLL + G + +++ ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
Q+ + Q +L+ + D +I + I + + L + + LSG
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPW-QIRNRRPDRAAALDLLARFALPDSILTKNITELSG 136
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYIDE 194
G+++R++L L P++L+LDE TS +D I + Y+ E +L TH D+
Sbjct: 137 GEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196
Query: 195 A 195
A
Sbjct: 197 A 197
|
Length = 223 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-14
Identities = 55/227 (24%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I VE+ + R+ L L +++ + + +LLG +G GK+TLL + G + G +
Sbjct: 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 68 HLS-----------ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ + SK L F ++ T+ + + + + G+ +++ + E
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEE 121
Query: 117 LQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+ + F+ K LS GQ++RV++A L DP++++LDEP + +DP E + L
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 176 LYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L G+T+++ TH +D A + + + ++++G +L E +L ++
Sbjct: 182 DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-14
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 44/213 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---------GQNVLNGGNI-HLSITSK 74
+L + +T++K +++L+G +G GK+TL I G+ + G +I L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 75 KQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-S 132
+LG F+ Q YP I G+ F R
Sbjct: 75 ARLGIFLAFQ---YPP-----------EIPGVKN----------------ADFLRYVNEG 104
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY- 191
SGG+++R + LL +P+L ILDEP SG+D + + L E G+++LI THY
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 192 -IDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
+ + K + ++ G +++ ++ LE
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQL 77
VL+ + + + + +LLG SG GKTTLL I G G+I T +++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSL---------QQIKEKAEYLQALLHLNHF-K 127
GF+ Q +L+ T+ + I + G+++ IK K L ++ L H
Sbjct: 77 GFVFQHYALFRHMTVFDNIAF-----GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TIL 186
R LSGGQ++RV+LA L +P++L+LDEP +D + +E+ L L E + T +
Sbjct: 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSV 191
Query: 187 ITTHYIDEA 195
TH +EA
Sbjct: 192 FVTHDQEEA 200
|
Length = 353 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-14
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 38/207 (18%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS--- 70
L + M + + ++ +L+G SGCGK+T L C I G L+G +I+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 71 -ITSKKQLGFMPQQISLYPEFTIDEMICY---------YGLIYGMSLQQIKEKAEYL--- 117
+ +K++G + Q + +P+ +I E I Y GL+ + + K+ + L
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 118 ---QALLHLNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
QA L + + LSGGQQ+R+ +A L DPE++++DEP S +DP+ +
Sbjct: 180 SLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKK 197
I + + LAE T+++ TH + +A +
Sbjct: 239 IEDLIEELAEE-YTVVVVTHNMQQAAR 264
|
Length = 305 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-14
Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 16/235 (6%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I +EN K + +K+ VLD + + + K I S++G +G GK+TLLS + +G+
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 62 LNGGNIHLSITSK--KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G + + + + K+L + Q+ + T+ +++ + Y +++ +A
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 120 L--LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
+ LHL R LSGGQ++R +A+ L D + ++LDEP + +D + +I L
Sbjct: 120 IEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 177 YLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
LA E G+TI++ H I+ A S I ++ G ++++ P +++ + + D
Sbjct: 180 RLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYD 234
|
Length = 252 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-14
Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 28/213 (13%)
Query: 8 AIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-- 64
AI+V++ ++ ++SK ++ + M + ++ + +++G SGCGK+T + + + L G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 65 ----------GNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIYG----MS 106
NI+ + ++Q+G + Q+ + +P +I E + Y I
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQAD 122
Query: 107 LQQIKEKAEYLQALLH--LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
L +I E A AL + + LSGGQQ+R+ +A L P++L++DEP S +D
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197
P+ ++ L++ S TI I TH + +A +
Sbjct: 183 PIATMKV-EELIHSLRSELTIAIVTHNMQQATR 214
|
Length = 259 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SIT--SKKQLG- 78
L+ L + + + +++G++G GK+TLL+ I G G I + +T S +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 79 -----FMPQQISLYPEFTIDE-MICYY--GLIYGMSLQQIKEKAEYLQALLH------LN 124
F PE TI+E + G G+S + + + L N
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGR 183
+ G LSGGQ++ +SL + LH P++L+LDE T+ +DP AE + + E
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 184 TILITTHYIDEA 195
T L+ TH +++A
Sbjct: 201 TTLMVTHNMEDA 212
|
Length = 263 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS----------KKQL 77
+ V++ +L+G SG GK+TLL+ + G + + G + L + K +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL----HLNHFKRKCGSL 133
GF+ Q L P E + L+ G S +Q + A+ L L L+H L
Sbjct: 91 GFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---AQL 147
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYI 192
SGG+Q+RV+LA P++L DEPT +D ++I + L L E G T+++ TH +
Sbjct: 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207
Query: 193 DEAKKSHMIGLMRKGILLEES 213
A + + G L EE+
Sbjct: 208 QLAARCDRRLRLVNGQLQEEA 228
|
Length = 228 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 4e-14
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 24/188 (12%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLS----ITSK 74
+ + K+ I + +G SGCGK+T+L C + G+ +G N++ + +
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLH---LNHFKRK 129
+++G + Q+ + +P+ +I + I Y I G + ++ E++ QA L + K+
Sbjct: 91 RRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERS-LRQAALWDEVKDKLKQS 148
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
SLSGGQQ+R+ +A + PE++++DEP S +DP+ I + L E TI+I T
Sbjct: 149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVT 207
Query: 190 HYIDEAKK 197
H + +A +
Sbjct: 208 HNMQQAAR 215
|
Length = 264 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 4e-14
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ N R + +LD + +T++ + ++LG +G GK+TLL ++G+ + G +
Sbjct: 2 MLEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 68 HL---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYL 117
L + ++ +PQ SL FT++E++ +G+S + A L
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 118 QA--LLHLNHFKRKCGSLSGGQQRRVSLAITLL------HDPELLILDEPTSGIDP 165
L HL R LSGG+Q+RV LA L P L+LDEPTS +D
Sbjct: 120 AQVDLAHLAG--RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-14
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 32/228 (14%)
Query: 9 IRVENAYKR-HSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--------- 58
IRVE K + + + +D + + + +LLG SG GK+TLL ++G
Sbjct: 5 IRVEKLAKTFNQHQALHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61
Query: 59 -------QNVLNGGNIHLSI-TSKKQLGFMPQQISLYPEFTIDEMICYYGL----IYGMS 106
+ V G + I S+ G++ QQ +L ++ E + L +
Sbjct: 62 SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121
Query: 107 LQQI--KEKAEYLQAL--LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
++K LQAL + + HF ++ +LSGGQQ+RV++A L+ ++++ DEP +
Sbjct: 122 FSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181
Query: 162 GIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEA-KKSHMIGLMRKG 207
+DP A + + L + ++ G T+++T H +D A + I +R+G
Sbjct: 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
Length = 262 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-14
Identities = 47/195 (24%), Positives = 98/195 (50%), Gaps = 39/195 (20%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCIT------------GQNVLNGGNIHLS----ITSK 74
+ ++ ++ + +G SGCGK+T+L + G+ +L+G +++ + +
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-------YLQALLHLNHFK 127
+ +G + Q+ + +P +I + + + G+ L ++ K + L+ N K
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV-----VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 128 ----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV---IAEEIWNHLLYLAE 180
+ G LSGGQQ+R+ +A + +P++L++DEP S +DP+ E++ N L +
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL----K 195
Query: 181 SGRTILITTHYIDEA 195
TI+I TH + +A
Sbjct: 196 QDYTIVIVTHNMQQA 210
|
Length = 258 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 8e-14
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-------------ITGQNVLNGGNIHL-- 69
+L + + + ++I+ ++G SG GK+TLL + G+ + G +I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 70 SITSKKQLGFMPQQISLYPEFTIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNH 125
+I +K++G + QQ + +P +I + I Y +G+ +++I E+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 126 --FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
LSGGQQ+R+++A L P++L++DEPTS ID V ++ I + L
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLE--------ESPPKVLLEKY 222
++++ + A+ + + + G L+E SP L EKY
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKY 251
|
Length = 257 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCI------------TGQNVLNGGNIHLSITSKKQL- 77
+ + K+ + + +G SGCGK+TLL G+ +L+G NI +T K+ +
Sbjct: 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI---LTPKQDIA 90
Query: 78 ------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-------LQALLHLN 124
G + Q+ + +P M Y + +G+ L + +AE L N
Sbjct: 91 LLRAKVGMVFQKPTPFP------MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 125 HFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
K K SLSGGQQ+R+ +A + PE+L+LDEP S +DP+ I L+ +
Sbjct: 145 EVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELK 203
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
T++I TH + +A + S M G L+E + K K ED
Sbjct: 204 QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTED 253
|
Length = 260 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 1e-13
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQN-VLNG----GNIHL-----------SITSKKQ 76
++K+ I +G SGCGK+T+L + N ++ G G++H + ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK----EKAEY-LQALLHLNHFKRKCG 131
+G + QQ + + M + + +G+ L + K ++ ++ LQ + K K
Sbjct: 91 IGMVFQQPNPF------SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK 144
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
SLSGGQQ+R+ +A + +PE+L+LDEP S +DP+ + ++ L + TI +
Sbjct: 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIAL 203
Query: 188 TTHYIDEAKK 197
TH + +A +
Sbjct: 204 VTHNMQQAIR 213
|
Length = 261 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 16/223 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V NA + LP L+ + ++ + + +++G GCGK++LLS + + G++
Sbjct: 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
H+ K + ++PQQ + + ++ E I + + QQ+ E L L L
Sbjct: 696 HM----KGSVAYVPQQAWIQND-SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGD 750
Query: 128 R-----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL----YL 178
R K +LSGGQ++RVSLA + + ++ + D+P S +D + + I+ H++ L
Sbjct: 751 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810
Query: 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+T ++ TH I + +I +M G + E + LL++
Sbjct: 811 K--NKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---------SITSKK 75
VLD + ++V++ ++ L+G +G GKTTLL I G G + + + + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 76 QLGFMPQQISLYPEFTIDEMI-----CYYGLIYGM------SLQQIKEKAEYLQALLHLN 124
++ +PQ SL EF + +++ + ++++ E+ Q
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ------ 131
Query: 125 HF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY------ 177
F R SLSGG+++RV LA L +L+LDEPT+ +D NH +
Sbjct: 132 -FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI-------NHQVRTLELVR 183
Query: 178 -LAESGRTILITTHYID-EAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
L + G+T + H +D A+ + L+ G + PP +L +L F
Sbjct: 184 RLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL---TADTLRAAF 236
|
Length = 402 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-13
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-----QNVLNGGNIHLSITS----KKQ 76
L+ + ++ K S++G +G GK+T I G + + L+ + +++
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ------QIKEKAEYLQALLHLNHFKRKC 130
+G + Q P+ + +GM Q IK E L A+ L+ R+
Sbjct: 83 IGMVFQN----PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP 138
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITT 189
LSGGQ++RV++A + PE++ILDE TS +DP +EI + + E + T+L T
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198
Query: 190 HYIDEAKKSHMIGLMRKGILLEESPPKVLL 219
H +DEA S I +M+ G +++E+ P L
Sbjct: 199 HDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-13
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60
+ K I+VEN + + L + + + ++LG +G GK+T+ +TG
Sbjct: 1 IKNKSV-MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 61 VLNGGNIHL--SITSKKQLGFMPQQISLY---P--EF---TIDEMICYYGLIYGM-SLQQ 109
G I + SK+ L + ++I + P +F T+++ I + GL ++
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLENKKVPPKK 118
Query: 110 IKEK-AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+K+ + + + ++ ++ +LSGGQ++RV++A L +PE++I DE TS +DP
Sbjct: 119 MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 169 EEIWNHLLYLAESGRTILIT-THYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220
EI ++ L ++ + LI+ TH +DEA + + + +G L+ + PK +L
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-13
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSITSKKQLGFMP 81
+ L + V + L+G +G GK+TLL + G + G + ++S LG
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG--- 92
Query: 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRR 140
PE T E I G + G+S ++I EK + + L + + S G + R
Sbjct: 93 --GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR 150
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SH 199
++ AI +P++L++DE + D E+ L L + G+T+++ +H K+
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210
Query: 200 MIGLMRKGILLEE 212
++ KG + +
Sbjct: 211 RALVLEKGKIRFD 223
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-13
Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 21/235 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
IR+EN + P L+ + + ++K ++G +G GK+TL + G G +
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 69 LSITS----------KKQLGFMPQQISLYPEF-----TIDEMICYYGLIYGMSLQQIKEK 113
+S +K +G + Q PE T++E + + + +I+++
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQN----PETQFVGRTVEEDLAFGPENLCLPPIEIRKR 116
Query: 114 AEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ A + L ++ R +LSGGQ + V+LA L +PE LI DE TS +DP +
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 173 NHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
+ L E G+TI+ TH ++E + I +M +G ++ E P+ +L ++++L
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
Length = 274 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITS-----KKQLGFMPQ 82
V + I G G G+T L++C+ G + GG I L S S KK + ++ +
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 83 ---QISLYPEFTIDEMICY------------YGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+P F+I + + GL + + Q+ E L AL
Sbjct: 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL------- 398
Query: 128 RKCGS-------LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
KC S LSGG Q++V ++ L PE++I DEPT GID EI+ + LA+
Sbjct: 399 -KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 181 SGRTILITTHYIDE 194
G+ IL+ + + E
Sbjct: 458 DGKVILMVSSELPE 471
|
Length = 510 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-13
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSC------------ITGQNVLNGGNIHLSITS----K 74
M +K+ I +L+G SG GK+T L +TGQ + G +I+ + +
Sbjct: 41 MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQAL-------LHL 123
K +G + Q+ + + + +I E I + G+ L +I E + AL LH
Sbjct: 101 KHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK 159
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ +LSGGQQ+R+ +A + P++L++DEP S +DP+ ++ + L ++
Sbjct: 160 SAL-----TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-Y 213
Query: 184 TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229
TI+I TH + +A + S G L+E + + ++S D
Sbjct: 214 TIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTND 260
|
Length = 267 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--- 63
I ++N K + L+ + + + I+ ++GASG GK+TL+ CI N+L
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI---NLLERPT 58
Query: 64 GGNIH-----LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111
G + L+ S+K+L G + Q +L T+ + + + G +IK
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK 118
Query: 112 EKAEYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ L L+ L+ + + LSGGQ++RV++A L +P++L+ DE TS +DP
Sbjct: 119 ARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 171 IWNHLLYLAESGR----TILITTHYID 193
I L L + R TI++ TH +D
Sbjct: 179 I---LELLKDINRELGLTIVLITHEMD 202
|
Length = 343 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-13
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86
L T+ + + G +G GKT+LL + G + G + ++ Q L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 87 Y--------PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK---CGSLSG 135
Y E T E + +Y L + +AL + + LS
Sbjct: 78 YLGHQPGIKTELTALENLRFY-----QRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSA 132
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GQQRRV+LA L L ILDEP + ID + L AE G +++TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-13
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 14 AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--- 70
AY L VL + T+ + +L+G SG GK+T+++ + GG + L
Sbjct: 20 AYPTRPDTL--VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 71 ITSKK------QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN 124
I+ + ++ + Q+ L+ ++ + I Y GL S + +KE A+ A ++
Sbjct: 78 ISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-GL-QSCSFECVKEAAQKAHAHSFIS 134
Query: 125 HFKR--------KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
K LSGGQ++RV++A L+ +P++LILDE TS +D +E+ L
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD-AESEQQVQQAL 193
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
Y RT+L+ H + +++ I ++ G
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 7e-13
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 9 IRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N +K + Y L+ + V++ S++G +G GK+T + I G G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 68 -----HLSITS----KKQLGFMPQQISLYP--EF---TIDEMICYYGLI-YGMSLQQIKE 112
L+ + + ++G + Q P +F T+++ + + GL G+ +++KE
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQN----PDNQFVGATVEDDVAF-GLENKGIPHEEMKE 119
Query: 113 KAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ L+ + FK R+ LSGGQ++RV++A + P+++ILDE TS +DP E+
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 172 WNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
+ + + T++ TH +DE S + +M+ G + S P+ L + N
Sbjct: 180 IKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-13
Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 25/180 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+ L T+ + G +G GKTTLL + G + G + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-----------LLNGGP 63
Query: 85 SLYPEFTIDEMICYYGLIYGMS-----------LQQIKEKAEYLQAL--LHLNHFK-RKC 130
+ +I + Y G G+ + +AL + LN F+ R
Sbjct: 64 LDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LS GQQRRV+LA LL L ILDEPT+ +D + G +++TTH
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 51/185 (27%), Positives = 102/185 (55%), Gaps = 26/185 (14%)
Query: 33 VQKSTIYSLLGASGCGKTTLL-----------SC-ITGQNVLNGGNIHLS----ITSKKQ 76
+ + + +L+G SGCGK+T+L C + G+ + +G +++ + +++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS--LQQIKEKAEYLQALLHLNHFKRKCG--- 131
+G + QQ + +P+ +I E I + I G + + ++ E++ A+ + K K
Sbjct: 96 IGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVW--DECKDKLNESG 152
Query: 132 -SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
SLSGGQQ+R+ +A T+ +PE++++DEP S +DP+ +I + L ++ TI+I TH
Sbjct: 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTH 211
Query: 191 YIDEA 195
+ +A
Sbjct: 212 NMQQA 216
|
Length = 269 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 26 LDKLCMTVQ----KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS----------- 70
L LC+TV I ++ G SG GKT+L++ I+G G I L+
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 71 --ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK 127
K+++G++ Q L+P + + L YGM+ + + + + + ALL +
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRG-----NLRYGMA-KSMVAQFDKIVALLGIEPLLD 123
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT-IL 186
R GSLSGG+++RV++ LL PELL++DEP + +D E+ +L LA IL
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 187 ITTHYIDE 194
+H +DE
Sbjct: 184 YVSHSLDE 191
|
Length = 352 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-12
Identities = 56/216 (25%), Positives = 111/216 (51%), Gaps = 26/216 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNVLNG-----GNIHLSIT 72
L+ + +++ +++G +G GK+TL L +G ++ G NI
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR---E 75
Query: 73 SKKQLGFMPQ----QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK- 127
+K +G + Q QI P T+++ I + + G+ + + + +L L +
Sbjct: 76 VRKFVGLVFQNPDDQI-FSP--TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTIL 186
R LSGG+++RV++A + +P++L+LDEPT+G+DP +E+ + L L E+ G T++
Sbjct: 133 RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVI 192
Query: 187 ITTHYID-EAKKSHMIGLMRKG-ILLEESPPKVLLE 220
+TH +D + + I +M KG I+ + ++ L+
Sbjct: 193 FSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-12
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT----SKKQLGFM 80
VL L + S + L+GA+GCGK+TL ++G G + SK+ L +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 81 PQQISLY---PE----FT-IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK-CG 131
QQ++ PE +T ID I + G+ +I + + L+ HF+ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
LS GQ++RV++A L+ L+LDEPT+G+DP ++ + + G ++I++H
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195
Query: 192 IDEAKK-SHMIGLMRKGILLEESPP 215
ID + S + ++R+G +L P
Sbjct: 196 IDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +N ++ S + L + + K S++G +G GK+T+ + G + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 68 --HLSITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI---KEKAEY 116
+ +IT +K +G + Q P+ I Y + +G+ + +
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQN----PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 117 LQALLHLNHFKR---KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+AL ++ +R + +LSGGQ++RV++A L +P ++ILDE TS +DP + + +
Sbjct: 124 SEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
Query: 174 HLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ + +E TI+ TH + EA ++ + +M KG + +E P + + + L + L
Sbjct: 184 LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH--AEELTRIGL 241
Query: 233 LL 234
L
Sbjct: 242 DL 243
|
Length = 269 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 20/147 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++ I +LLG +G GK+TL+ + G + G I + K ++G++PQ++
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN--GKLRIGYVPQKL 76
Query: 85 SLYPE--FTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-----LHLNHFKRKCGSLSGGQ 137
L T++ + L+ +K + L AL HL + LSGG+
Sbjct: 77 YLDTTLPLTVNRF---------LRLRPGTKKEDILPALKRVQAGHLIDAPMQ--KLSGGE 125
Query: 138 QRRVSLAITLLHDPELLILDEPTSGID 164
+RV LA LL+ P+LL+LDEPT G+D
Sbjct: 126 TQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK--- 74
+L L +T + L+G +G GK+TLL + G+ +L+ + S +SK
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE-SWSSKAFA 84
Query: 75 KQLGFMPQQISLYPEFTIDEMIC-----YYGLIYGMSLQQIKEKAEYLQALLHLNHF-KR 128
+++ ++PQQ+ T+ E++ ++G + G +EK E +L+ L R
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL-GRFGAADREKVEEAISLVGLKPLAHR 143
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESGR 183
SLSGG+++R +A+ + D L+LDEPTS +D IA ++ +L L E G
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQV--DVLALVHRLSQERGL 199
Query: 184 TILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLE 220
T++ H I+ A + +++ L R G ++ + P L+
Sbjct: 200 TVIAVLHDINMAARYCDYLVAL-RGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN K KL ++D L + I ++G +G GK+TL ITGQ + G I
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
Query: 69 LSITSKKQLGFMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ T K L ++ Q +L P T+ E I I + +++ +A Y+ +FK
Sbjct: 381 IGETVK--LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA-YVGRF----NFK 433
Query: 128 -----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+K G LSGG++ RV LA TL +L+LDEPT+ +D
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-------QNVLNGGNIH-LSITSK-K 75
++D + +T ++ LLG +G GK+TLL + G L G ++H LS ++ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 76 QLGFMPQQISLYPEFTIDEM-----ICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRK 129
++ + Q T+ ++ I + L G S L A L+H R
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL-ARTELSHLADRD 134
Query: 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
+LSGG+++RV +A L +P+LL+LDEPT+ +D E + LA +G T++
Sbjct: 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194
Query: 190 HYIDEAKK--SHMIGLMRKGILLEESPPKVLL 219
H ++ A H++ ++ G ++ PP+ +L
Sbjct: 195 HDLNLAASYCDHVV-VLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 26/190 (13%)
Query: 41 LLGASGCGKTTLLSCITG----QNVL--NGGNIH-LSITS-KKQLGFMPQQISLYPEFTI 92
L+G SG GKT+LL+ + G Q L NG + L S +K L ++ Q L P T+
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTL 439
Query: 93 DEMICYYGLIYG---MSLQQIK---EKA---EYLQALLH-LNH-FKRKCGSLSGGQQRRV 141
+ + + G S +Q++ E A E+L L L+ + LS GQ +R+
Sbjct: 440 RDNV-----LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
+LA LL +LL+LDEPT+ +D +E++ L A +T L+ TH +++ + I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD-AHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQI 553
Query: 202 GLMRKGILLE 211
+M+ G +++
Sbjct: 554 WVMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ------- 76
+L + +Q ++G SG GK+TL + G G++ L +Q
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 77 --LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA---LLHL-NHFKRKC 130
+G++PQ + L+ TI E I +G +++ E A +L L + +
Sbjct: 410 RHIGYLPQDVELFDG-TIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 131 G----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
G +LSGGQ++R++LA L DP L++LDEP S +D + +L G T++
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526
Query: 187 ITTH 190
+ H
Sbjct: 527 VIAH 530
|
Length = 580 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITS--KK 75
LD L +TV+ +L+G SG GK+TL + +G+ +L+G ++ + +
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQA---LLHL-----N 124
++ +PQ L F M + YG + ++++ A A + L
Sbjct: 415 RMALVPQDPVL---FAASVM---ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT 468
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
+ + +LSGGQ++R+++A +L D +L+LDE TS +D +E++ L GRT
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD-AESEQLVQQALETLMKGRT 527
Query: 185 ILITTHYIDEAKKSHMIGLMRKGILLEE 212
LI H + K+ I +M +G ++ +
Sbjct: 528 TLIIAHRLATVLKADRIVVMDQGRIVAQ 555
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 37/186 (19%)
Query: 43 GASGCGKTTLLSCITG-----QNVLNGGNIHLSITSKKQLGFMPQQISLYP-EFTIDEMI 96
G SGCGK+TLL + G L G L+ +++ M Q L P + ID +
Sbjct: 45 GRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNV- 102
Query: 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC---GSLSGGQQRRVSLAITLLHDPEL 153
G+ L+ + + LQAL + R +LSGGQ++RV+LA L+H P L
Sbjct: 103 -------GLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154
Query: 154 LILDEPTSGIDPV-------IAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206
L+LDEP +D + + E +W + G T+L+ TH + EA + + +
Sbjct: 155 LLLDEPLGALDALTRIEMQDLIESLWQ------QHGFTVLLVTHDVSEA-----VAMADR 203
Query: 207 GILLEE 212
+L+EE
Sbjct: 204 VLLIEE 209
|
Length = 257 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 35/195 (17%)
Query: 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP----- 81
+ + + V++ I SL+G +G GKTT+ +C+TG GG I L + + +P
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR---GQHIEGLPGHQIA 78
Query: 82 --------QQISLYPEFTIDE--MICYY-----GLIYGM--------SLQQIKEKAEY-L 117
Q + L+ E T+ E ++ + GL G+ + + ++A L
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
+ + L H R+ G+L+ GQQRR+ +A ++ PE+L+LDEP +G++P +E+ + L+
Sbjct: 139 ERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL-DELIA 197
Query: 178 L--AESGRTILITTH 190
E T+L+ H
Sbjct: 198 ELRNEHNVTVLLIEH 212
|
Length = 255 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQL---------G 78
L V+ I L+G +G GK+TLL+ + G +L G G+I + +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG--LLPGSGSIQFAGQPLEAWSAAELARHRA 72
Query: 79 FMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHL-NHFKRKCGSLS 134
++ QQ + P F + + Y ++ + + + L L + R LS
Sbjct: 73 YLSQQQT--PPFAMP--VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128
Query: 135 GGQQRRVSLAITLLH-----DPE--LLILDEPTSGIDPVIAEEIWNHLLY--LAESGRTI 185
GG+ +RV LA +L +P LL+LDEP + +D +A++ L L + G +
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALDRLLSELCQQGIAV 186
Query: 186 LITTHYIDE-AKKSHMIGLMRKGILLEESPPK-VLLEKYNMKSLEDVF 231
++++H ++ + + + L+++G LL VL + L VF
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN----LAQVF 230
|
Length = 248 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGF 79
L L +T S I + GA+GCGK++LL I G + GNI +++ +K +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK------RKCGSL 133
+ + L E T+ E + ++ IY AE L A +H +FK KC SL
Sbjct: 75 IGHNLGLKLEMTVFENLKFWSEIY--------NSAETLYAAIH--YFKLHDLLDEKCYSL 124
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
S G Q+ V++A + +L +LDE + + + + N ++ A SG +L+++H
Sbjct: 125 SSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
|
Length = 195 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKK- 75
VL + +++++ LLG SGCGK+TL + G G + L ++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 76 -----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL----LHLNHF 126
QL F ++ P T+ ++I L + SL + ++KA + L L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGE-PLRHLTSLDESEQKARIAELLDMVGLRSEDA 144
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTI 185
+ LSGGQ +R+++A L P+L++LDE S +D V+ I L L G
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAY 204
Query: 186 LITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L TH + + + +M KG ++EE
Sbjct: 205 LFITHDLRLVQSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES 181
L++ + +LSGGQ++RV++A L +P+++ILDE TS +DP E+I + L ++
Sbjct: 134 LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193
Query: 182 GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
T++ TH IDEA + + ++ G LL + P + K M
Sbjct: 194 NLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
Length = 282 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-11
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--------ITSKKQ 76
+L ++ + + L G++G GKTTLL I G G I T +KQ
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSG 135
L F+ + + P T+ E C Y + + I E L L L H CG LS
Sbjct: 76 LCFVGHRSGINPYLTLREN-CLYDIHFSPGAVGITE----LCRLFSLEHLIDYPCGLLSS 130
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
GQ+R+V+L + +L +LDEP +D + I + G +L+T+H
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-11
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITS---------KKQLGFMPQQISLYP 88
L G SG GK+TLL I G + G I S IT ++Q+G + Q L
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEK-AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL 147
+ T+ + + +I G S I+ + + L + L+ K LSGG+Q+RV +A +
Sbjct: 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152
Query: 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
++ P +L+ DEPT +D ++E I G T+L+ TH
Sbjct: 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 35/195 (17%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSKKQLGFMPQQISLY--------P 88
+L+G SG GKTTL+ + G+ G G+I +S KKQ F +IS Y P
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFPKKQETF--ARISGYCEQNDIHSP 966
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEKAEY--------LQALLHLNHFKRKCGSLSG----- 135
+ T+ E LIY L+ KE ++ + L+ L++ K L G
Sbjct: 967 QVTVRE-----SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021
Query: 136 -GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY--I 192
Q++R+++A+ L+ +P ++ +DEPTSG+D A + + ++GRT++ T H I
Sbjct: 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081
Query: 193 DEAKKSHMIGLMRKG 207
D + + LM++G
Sbjct: 1082 DIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 20/138 (14%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSKKQLGFMP---------QQISLYP 88
L+G SGCGK+TLL + G + G I + + + P Q +LYP
Sbjct: 35 LVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-----PADRDIAMVFQNYALYP 89
Query: 89 EFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAIT 146
++ E + Y GL I GM +I+E+ +L L RK LSGGQ++RV++
Sbjct: 90 HMSVRENMAY-GLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRA 148
Query: 147 LLHDPELLILDEPTSGID 164
++ +P + + DEP S +D
Sbjct: 149 IVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIH-LSITS-KKQ 76
L + + +L+G SG GK+T+ + +T G+ +L+G ++ ++ S + Q
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 77 LGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHLNHFKR------- 128
+ + Q + L+ + TI I Y Y S +QI+E A A+ +N
Sbjct: 419 VALVSQNVHLFND-TIANNIAYARTEQY--SREQIEEAARMAYAMDFINKMDNGLDTVIG 475
Query: 129 -KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
LSGGQ++R+++A LL D +LILDE TS +D I L L + RT L+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLV 534
Query: 188 TTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
H + +K+ I ++ G ++E LL +
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568
|
Length = 582 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-11
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 37/237 (15%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLN 63
V +Y VL L T+ + +L+G SG GK+T+ + + GQ +L+
Sbjct: 484 VSFSYPNRPDVP--VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 64 GGNI----HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
G + H + +Q+ + Q+ L+ ++ E I Y GL ++I A+ A
Sbjct: 542 GVPLVQYDHHYL--HRQVALVGQEPVLFSG-SVRENIAY-GLTD-TPDEEIMAAAK--AA 594
Query: 120 LLH------LNHFKRKCGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
H N + + G LSGGQ++R+++A L+ P +LILDE TS +D
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-- 652
Query: 170 EIWNHLLYLAES--GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNM 224
LL + S RT+L+ H + +++ I +++KG ++E K L+E
Sbjct: 653 ---EQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-11
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 9 IRVENAYK-----RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
+ VE+ K + VL + +TV +L G SG GK+TLL + + +
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 64 GGNI---HLSITS--------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106
G I H +K +G++ Q + + P + E++ L G+
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP 121
Query: 107 LQQIKEKAEYLQALLHLNHFKR----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162
+ + +A L L LN +R + SGG+Q+RV++A + D +L+LDEPT+
Sbjct: 122 REAARARAREL--LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 163 IDP 165
+D
Sbjct: 180 LDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---------SITSKKQ 76
+ + V+ I + G +G G++ L+ I+G G I L S +++
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMS------LQQIKEKAEYLQALLHLN------ 124
LG ++ PE D +GL+ +S L + +K L
Sbjct: 334 LG-----LAYVPE---DRH--GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 125 -----HFK-RKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
F R SLSGG Q+++ LA L P+LLI +PT G+D E I
Sbjct: 384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443
Query: 173 NHLLYLAESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPPK 216
LL L ++G+ +L+ + +DE + S I ++ +G ++ PP+
Sbjct: 444 ERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488
|
Length = 501 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 47/201 (23%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLS----IT 72
+ D + +TV + I +++G SG GKTTLL I GQ + G I +S T
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 73 SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF------ 126
+K++ + Q +L+ + + + + Y ++E + LLH
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAY----------PLREHTQLPAPLLHSTVMMKLEAV 131
Query: 127 ------KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV-------IAEEIWN 173
K LSGG RR +LA + +P+L++ DEP G DP+ + E+ N
Sbjct: 132 GLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL-N 190
Query: 174 HLLYLAESGRTILITTHYIDE 194
L G T ++ +H + E
Sbjct: 191 SAL-----GVTCVVVSHDVPE 206
|
Length = 269 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-10
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 16/221 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +N R+ LP VL + +++ ++G +G GK++LL + L+ G+I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 69 ---LSITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA---EY 116
+ I+ + ++ +PQ L+ TI + +G L Q E+ E+
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYSDEELWQALERVGLKEF 121
Query: 117 LQALL-HLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+++L L+ + G LS GQ++ + LA LL ++L+LDE T+ +DP + +
Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP-ETDALIQK 180
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215
+ A T+L H +D S I ++ KG ++E P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----SITSKKQ---- 76
L + V + +L+G +G GK+T++ +TG + G+I + K
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 77 -LGFMPQQISLYPEFTIDEMIC----YYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130
+G + Q+++L P+ TI E I + + +++ +A+ L A L+L +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV 139
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
G LS G+Q+ V +A L + +++I+DEPT + E ++ + L GR I+ +H
Sbjct: 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
Query: 191 YIDE 194
+ E
Sbjct: 200 RLKE 203
|
Length = 501 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G SG GKT+LL + G + G+ +S+ + L F+PQ+ P+ T+ E +CY
Sbjct: 424 ITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFLPQR-PYLPQGTLREALCY-- 478
Query: 101 LIYGMSLQQIKEKAEYLQAL--LHLNHFKRKCGS-------LSGGQQRRVSLAITLLHDP 151
+ + AE + L + L + LSGG+Q+R++ A LLH P
Sbjct: 479 ---PNAAPDFSD-AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 152 ELLILDEPTSGIDP 165
+ + LDE TS +D
Sbjct: 535 KWVFLDEATSALDE 548
|
Length = 604 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKK- 75
VL+ + ++++ +LLG SGCGK+TL + G + GN+ L+ +K
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 76 -----QLGFMPQQISLYPEFTIDEMICYYGLIYGMSL---QQIKEKAEYLQAL-LHLNHF 126
Q+ F ++ P T+ E+I L + +SL +++ +E L+A+ L +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIRE-PLRHLLSLDKAERLARASEMLRAVDLDDSVL 145
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTI 185
++ LSGGQ +RV LA L +P+LLILDE S +D V+ + L L + G
Sbjct: 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAC 205
Query: 186 LITTHYIDEAKK-SHMIGLMRKGILLEESP 214
L TH + ++ + +M G ++E P
Sbjct: 206 LFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 40 SLLGASGCGKTT-------LLSCITGQNVLNGGNIHLSITSKKQ-----LGFMPQQ--IS 85
SL+G SG GK+T L+ G+ + NG I K Q + F+ Q S
Sbjct: 354 SLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413
Query: 86 LYPEFT----IDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKCGSLSGGQQRR 140
L P T I E + +GL+ G + A L+ + L H R SGGQ++R
Sbjct: 414 LDPRQTVGDSIMEPLRVHGLLPGKAAA--ARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-S 198
+ +A L +P+++I DE S +D I +I N LL L + G L +H + ++ S
Sbjct: 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531
Query: 199 HMIGLMRKGILLEESPPKVLLE 220
H + +M G ++E P + + E
Sbjct: 532 HRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-10
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSI-TSKK 75
+L+ + +++ + G SGCGK+TLL + +G + G +I L ++
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG 135
Q+ + Q +L+ + D +I + I + + L + LSG
Sbjct: 82 QVSYCAQTPTLFGDTVYDNLIFPW-QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSG 140
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGRTILITTHYI 192
G+++R+SL L P++L+LDE TS +D EI + Y+ E +L TH
Sbjct: 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR--YVREQNIAVLWVTHDK 198
Query: 193 DEAK 196
DE
Sbjct: 199 DEIN 202
|
Length = 225 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS----GRISFSSQFS 107
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHFKRKCGS--------LS 134
+ P TI E I I+G+S + + K+ + Q + F K + LS
Sbjct: 108 WIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P +D +EI+ + + +T ++ T ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 195 AKKSHMIGLMRKG 207
KK+ I ++ +G
Sbjct: 222 LKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 20/193 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + ++K + ++ G++G GK++LL I G+ + G I S ++ F PQ
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS----GRISFSPQTS 496
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKE----KAEYLQALLHLNHFKRKCG------SLS 134
+ P TI + I I+G+S + + KA L+ + L K K +LS
Sbjct: 497 WIMPG-TIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194
GGQ+ R+SLA + D +L +LD P + +D V +EI+ L S +T ++ T ++
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH 610
Query: 195 AKKSHMIGLMRKG 207
KK+ I L+ +G
Sbjct: 611 LKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-10
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 29 LCMTVQKSTIYSLLGASGCGKTTLLSCI-----------TGQNVLNGGNIH-LSITSKKQ 76
L +++++ + +L+G SG GK+ I +G+ +L+G + LSI +
Sbjct: 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHI 64
Query: 77 LGFMPQQISLY-PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH--LNHFKRKCGS- 132
M + + P FT+ G +Q + L+AL L +
Sbjct: 65 ATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALI--LEALEAVGLPDPEEVLKKY 122
Query: 133 ---LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILIT 188
LSGG +RV +A+ LL +P LI DEPT+ +D V + L L + G IL+
Sbjct: 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI 182
Query: 189 THYIDE-AKKSHMIGLMRKGILLEESPPK 216
TH + A+ + + +M G ++E K
Sbjct: 183 THDLGVVARIADEVAVMDDGRIVERGTVK 211
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKKQLG--FM 80
+ V+ I L G G G+T L + G GG I LS + G ++
Sbjct: 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343
Query: 81 P---QQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKA---EYLQAL-LHLNHFKRKC 130
P Q LY + + +C L + G ++ +E A Y +AL + NH ++
Sbjct: 344 PEDRQSSGLYLDAPLAWNVC--ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA 401
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LSGG Q++V +A L P+LLI+DEPT G+D +I+ + +A +L +
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISS 461
Query: 191 YIDE 194
++E
Sbjct: 462 DLEE 465
|
Length = 510 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNI-----HLSITSKKQLGFMPQQI---------SLYP 88
G SGCGK+T I G G + L + + I SL P
Sbjct: 54 GESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113
Query: 89 EFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLA 144
TI E+I Y +S Q++K++ + + + L N R SGGQ +R+ +A
Sbjct: 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIA 173
Query: 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L+ +P+L+I DEP S +D I ++ N L
Sbjct: 174 RALILEPKLIICDEPVSALDVSIQAQVVNLL 204
|
Length = 331 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-09
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 36/148 (24%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G SG GK++L + G G I + + L F+PQ+ P T+ E + Y
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIG--MPEGEDLLFLPQR-PYLPLGTLREQLIY-- 86
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
+ LSGG+Q+R++ A LLH P+ + LDE T
Sbjct: 87 -----PWDDV----------------------LSGGEQQRLAFARLLLHKPKFVFLDEAT 119
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILIT 188
S +D EE + L L + +I+
Sbjct: 120 SALD----EESEDRLYQLLKELGITVIS 143
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ------NVLNGGNIHLSITSKKQLGF 79
L+ L +V + L+G +G GKTTL+ ITG+ VL G+ L+ + ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 80 MP-----QQISLYPEFTIDEMI--------CYYGLIYGMSLQQIKEKAEYLQALLHLNHF 126
Q+ +++ T+ E + + ++ + + + + L A + L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 127 K-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
+ R LS GQ++ + + + L DP+LL+LDEP +G+ E+ L LA +I
Sbjct: 141 RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-HSI 199
Query: 186 LITTH 190
L+ H
Sbjct: 200 LVVEH 204
|
Length = 249 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNVLNGGNIHLSITSK--KQL 77
L L V+ I L+G +G GK+TLL+ + +G G + ++ +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHR 74
Query: 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGG 136
++ QQ + P F M ++ L + E + L L + R LSGG
Sbjct: 75 AYLSQQQT--PPF---AMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 137 QQRRVSLAITLLH-------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189
+ +RV LA +L +LL+LDEP + +D + L L + G I++++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 190 HYIDEA-KKSHMIGLMRKGILL 210
H ++ + +H L+++G LL
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLL 211
|
Length = 248 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 9 IRVENAYK------RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL 62
+ V N K + +LP VL + ++V L G SG GK+TLL + +
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 63 NGGNI---HLSIT--------------SKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105
+ G I H + +G++ Q + + P + +++ L G+
Sbjct: 64 DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 106 SLQQIKEKAEYLQALLHLNHFKRKCGSL-----SGGQQRRVSLAITLLHDPELLILDEPT 160
+ + KA L L+L + SL SGG+Q+RV++A + D +L+LDEPT
Sbjct: 124 PREVARAKAADLLTRLNL---PERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180
Query: 161 SGID 164
+ +D
Sbjct: 181 ASLD 184
|
Length = 235 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-09
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I EN K +L ++D L ++ I ++G +G GK+TL ITGQ + G I
Sbjct: 325 IEAENLSKSFGDRL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382
Query: 69 LSITSKKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSL--QQIKEKAEYLQALLHLNH 125
+ T K L ++ Q +L P T+ E I GL + + ++I +A Y+ +
Sbjct: 383 IGETVK--LAYVDQSRDALDPNKTVWEEISG-GLDI-IKVGNREIPSRA-YVGRF----N 433
Query: 126 FK-----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
FK +K G LSGG++ R+ LA TL +L+LDEPT+ +D
Sbjct: 434 FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 39/193 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------TGQNVLNGGNIHLSITSKKQ 76
+D + ++++ I + G G G+T L+ C+ G+ ++G + I + +Q
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV--KIRNPQQ 334
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ---------------IKEKAEYLQALL 121
+ Q I++ PE D G++ M + + I + AE L
Sbjct: 335 A--IAQGIAMVPE---DRK--RDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE 387
Query: 122 HLNHFKRKC-------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ K K LSGG Q++ LA LL +P++LILDEPT GID EI+
Sbjct: 388 SIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL 447
Query: 175 LLYLAESGRTILI 187
+ L + G I++
Sbjct: 448 INQLVQQGVAIIV 460
|
Length = 506 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-09
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 34/191 (17%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----QL 77
L+ L + V + ++G +G GKTT++ ITG+ + G++ +T +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 78 G----FMPQQISLYPEFTIDE--MICYYG-------LIYGMS---LQQIKEKAEY--LQA 119
G F Q+ +++ T+ E + L + +S +I+E E L
Sbjct: 78 GIGRKF--QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
R G LS GQ++ + + + L+ DP+LL+LDEP +G+ E+ L LA
Sbjct: 136 EAD-----RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 180 ESGRTILITTH 190
++++ H
Sbjct: 191 G-KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---------GQNVLNGGNI---HLSITS 73
LD + + V+ L G +G GK+TL+ ++ G+ +G + ++ T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 74 KKQLGFMPQQISLYPEFTIDEMI------CYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ + + Q+++L PE ++ E I G + ++ K + L ++
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
R G GGQQ+ V +A L LLILDEP+S + E + + + L G +
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 188 TTHYIDEAKK-SHMIGLMRKG 207
+H ++E K I ++R G
Sbjct: 197 ISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-09
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 15 YKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK 74
++ + Y L+ + V + I ++G +G GK+TL + I G + N G + + K
Sbjct: 29 FRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI----K 84
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSL 133
+ L + T E I GL+ G++ ++IKE + + F + +
Sbjct: 85 GSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY 144
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193
S G + R+ AI++ +P++L++DE S D ++ + + E G+TI +H +
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 194 EAK 196
+ K
Sbjct: 205 QVK 207
|
Length = 549 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQL-------- 77
L + +TV I++LLG +G GK+TL+ ++G + G I ++ + +L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 78 --GFMPQQISLYPEFTIDEMICYYGL-----IYGMSLQQIKEKAEYLQALLHLNHFKR-- 128
G + Q++S+ E T+ E + Y G + G+++ +E +L K
Sbjct: 81 GIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 129 --KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
K +LS ++ + +A TL+ D +++I+DEPTS + + ++ + L + G I+
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 187 ITTHYIDEAKK 197
+H + E ++
Sbjct: 200 YISHKLAEIRR 210
|
Length = 510 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT--SKKQLGFMPQQIS--- 85
+T+++ + L+G +G GK+TL +TG G I L S +QL + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 86 ----LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV 141
L+ + E LI LQ+++ L LN + LS GQ++R+
Sbjct: 404 SDYHLFDQLLGPEGKASPQLI-EKWLQRLE-----LAHKTSLNDGRFSNLKLSTGQKKRL 457
Query: 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH---YIDEAKK 197
+L + LL + ++L+LDE + DP E + LL L E G+TI +H Y A +
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 198 SHMIGLMRKGILLEESP 214
+ MR G L E +
Sbjct: 518 ---LLEMRNGQLSELTG 531
|
Length = 546 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-09
Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI--HLSITSKK 75
V + L + + +++G +GCGK+TLL ++ G L+G +I + S +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLH---LNHFKRK-C 130
++G + Q + + T+ E++ + + + KE E + + + H +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-----AESGRTI 185
+LSGGQ++R +A+ L + +++LDEPT+ +D I+ +I LL L E G T+
Sbjct: 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQI--DLLELLSELNREKGYTL 197
Query: 186 LITTHYIDEAKK--SHMIGLMRKGILLEESPPK 216
H +++A + SH+I L R+G ++ + PK
Sbjct: 198 AAVLHDLNQACRYASHLIAL-REGKIVAQGAPK 229
|
Length = 265 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GSLSGG Q++V + LL PE+L+LDEPT GID EI+ + LA+ + I+I
Sbjct: 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446
|
Length = 491 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-09
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 40/196 (20%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---- 81
LD + + +++L+G +G GK+TLL ++G + G+I + +++ F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI---DGQEMRFASTTAA 76
Query: 82 ---------QQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNHF--- 126
Q++ L PE T+ E + Y G + G+ + + +A L H
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGI----VNRRLLNYEAREQLEHLGVD 131
Query: 127 ---KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-----L 178
LS GQ++ V +A L + ++ DEPTS + A EI L+ L
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS---AREIEQ--LFRVIREL 186
Query: 179 AESGRTILITTHYIDE 194
GR IL +H ++E
Sbjct: 187 RAEGRVILYVSHRMEE 202
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHY 191
LSGG+++RV LA L +P L + DEPT +DP A+ + N L SG ++++T+H+
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 192 IDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230
+ S + G + EE P ++ + M+ + +V
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF-MEGVSEV 267
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTL------LSCITGQNVLNGGNIH-------LS 70
+D + +T+++ L+G SG GK+TL L G+ +G +I
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-------- 122
+ + Q+ F SL P T+ ++I ++ L E+ + + L
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSA-AERDQRVIEALEEVGLDPAT 419
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AES 181
N + + SGGQ++R+++A L+ PEL++LDEPTS +D + ++ + L L +
Sbjct: 420 RNRYPHE---FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH 476
Query: 182 GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
G + L +H + + H + +MR G ++E+ P + +
Sbjct: 477 GLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 25/192 (13%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLS---ITSKKQLGF 79
+D + ++++ I + G G G+T L+ + G G GN+ ++ + +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQA 333
Query: 80 MPQQISLYPE----------FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK 129
+ I++ PE + + I L +I AE + K K
Sbjct: 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393
Query: 130 C-------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
G LSGG Q++ LA LL +P +LILDEPT G+D EI+ + LA+ G
Sbjct: 394 TASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 183 RTILITTHYIDE 194
I++ + + E
Sbjct: 454 VAIIVVSSELAE 465
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 52/216 (24%), Positives = 107/216 (49%), Gaps = 26/216 (12%)
Query: 8 AIRVENAYKRHSSKLPY-VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
AI ++N Y SK L + + + ++ +++G +G GKT+L+S + G+ L+
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAE 671
Query: 67 IHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-KAEYLQALLH--- 122
S+ + + ++PQ +S T+ E I ++G + + +A + AL H
Sbjct: 672 TS-SVVIRGSVAYVPQ-VSWIFNATVRENI-----LFGSDFESERYWRAIDVTALQHDLD 724
Query: 123 ------LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL 176
L + ++SGGQ++RVS+A + + ++ I D+P S +D +A ++++ +
Sbjct: 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784
Query: 177 YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
G+T ++ T+ + H + LM + IL+ E
Sbjct: 785 KDELKGKTRVLVTNQL------HFLPLMDRIILVSE 814
|
Length = 1495 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKT-TLLSCI-----------------TG 58
R + V++ + + ++ +L+G SG GK+ T LS + G
Sbjct: 16 RQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQ--ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+++L+ L ++ + Q+ +SL P T+++ + Y L +++ + E
Sbjct: 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL-YEVLSLHRGMRREAARGEI 134
Query: 117 L---------QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
L QA L + + LSGG+++RV +A+ LL PELLI DEPT+ +D +
Sbjct: 135 LNCLDRVGIRQAAKRLTDYPHQ---LSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
Query: 168 AEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+I L L E +L TH + +K + + +M+ G +E++ L
Sbjct: 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT 91
++ +S + +LG +G GKTT + + G + G+I + + + + + PQ I E T
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT---VSYKPQYIKADYEGT 77
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP 151
+ +++ + K E + L R+ LSGG+ +RV++A L D
Sbjct: 78 VRDLL--SSITKDF-YTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDA 134
Query: 152 ELLILDEPTSGID 164
++ +LDEP++ +D
Sbjct: 135 DIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEF---TIDEMIC 97
+ G +GCGK++L + + GG L+ +K +L ++PQ+ P T+ + I
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGR--LTKPAKGKLFYVPQR----PYMTLGTLRDQI- 535
Query: 98 YYGLIYGMSLQQIKEKA-------EYLQALLHLNHFKRKCGS----------LSGGQQRR 140
IY S + +K + + L + L H + G LSGG+++R
Sbjct: 536 ----IYPDSSEDMKRRGLSDKDLEQILD-NVQLTHILEREGGWSAVQDWMDVLSGGEKQR 590
Query: 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
+++A H P+ ILDE TS + + ++
Sbjct: 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 53.2 bits (127), Expect = 3e-08
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE---LLILDEPTSGIDPV 166
+ L K +S G +R ++L + LL LL++DEP +G+ P
Sbjct: 167 LDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPK 226
Query: 167 IAEEIWNHLLYLAESGRTILITTH 190
+ ++ L L+E G ++ TTH
Sbjct: 227 LLRKLVELLKELSEKGAQLIFTTH 250
|
Length = 256 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTT----LLSCITGQN--VLNGGNIH-------LS 70
V+ + T++ L+G SG GK+T LL I Q +G +H L
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLP 359
Query: 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL----LHLNH 125
+ + Q+ F SL P + ++I GL ++ +L + + + + + L
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEE-GLRVHQPTLSAAQREQQVIAVMEEVGLDPET 418
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
R SGGQ++R+++A L+ P L+ILDEPTS +D + +I
Sbjct: 419 RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
|
Length = 529 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--------VLNG-----GNIHLSI 71
+L L V + ++G +G GK+TLLS ITG + L G G I
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334
Query: 72 TSKKQLGFMPQQISL-YPEFT--IDEMICYY----GLIYGMSLQQIKEKAEYLQALLHLN 124
KK +G++ + L Y T + ++ + G+ +S +Q K ++L +L ++
Sbjct: 335 --KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWL-DILGID 391
Query: 125 HFKRKCG--SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
SLS GQQR + L+ P LLILDEP G+DP+
Sbjct: 392 KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
|
Length = 490 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNG---GNIHLS-ITSKK-------QLGFMPQQISLYPE 89
+LG G G +TLL + + N G+IH + I K+ ++ ++ ++ +P
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97
Query: 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
T+ E + N F R +SGG+++RVS+A L+
Sbjct: 98 LTVRETL-------------------DFALRCKGNEFVRG---ISGGERKRVSIAEALVS 135
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILIT 188
+L D T G+D A EI + +A T ++
Sbjct: 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
++ +LSGG Q++ L L D ++++LDEPT GID EI+N + LA G +L
Sbjct: 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450
Query: 187 I 187
Sbjct: 451 F 451
|
Length = 501 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 5/182 (2%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
+H +K + LD + + + + L+G +G GK+TL + I G G + +
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV----DRNGE 86
Query: 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSG 135
+ + L + T E I + L G ++IK + L F + S
Sbjct: 87 VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSS 146
Query: 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195
G + ++ +I + +P++L++DE S D A++ + + E +TI +H + +
Sbjct: 147 GMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206
Query: 196 KK 197
++
Sbjct: 207 RQ 208
|
Length = 264 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 43 GASGCGKTTLLSCIT-------------GQNVLNGGNIHLSITSKK-QLGFMPQQISLYP 88
G SGCGK+TL +T GQ++L + +K Q+ F SL P
Sbjct: 48 GESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107
Query: 89 EFTIDEMICYYGLIYGMSL--QQIKEKAEYLQALLHL--NHFKRKCGSLSGGQQRRVSLA 144
+ I L+ SL + +EKA + A + L H+ R SGGQ++R+++A
Sbjct: 108 RKKV-GQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166
Query: 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180
L+ DP++++ DEP S +D + ++ N ++ L +
Sbjct: 167 RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202
|
Length = 327 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLL--YLAESGRTILITT 189
LSGG++RRV+L LL P++L+LDEPT+ +D AE + W L +L E T++ T
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAW---LEQHLQEYPGTVVAVT 215
Query: 190 H 190
H
Sbjct: 216 H 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGG+++RV++A T+L +P +LILDE TS +D + I L ++ +GRT L+ H +
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRL 458
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ I ++ G ++E + LL
Sbjct: 459 STIIDADEIIVLDNGRIVERGTHEELLAA 487
|
Length = 497 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRTILITTH 190
LSGG +RV +A+ + P+LLI DEPT+ +D I +I LL L E+ +LIT
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 191 YIDEAKKSHMIGLMRKGILLEESP 214
A+ +H I +M G ++E
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGK 237
|
Length = 326 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL- 69
V K + L + + + + I ++G +GCGK+TL G + G I L
Sbjct: 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 70 --SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
++++ + + +++ +F + + + SL + +YLQ L + K
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ---QYLQRLEIADKVK 459
Query: 128 RKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAE 180
+ G +LS GQQ+R++L L D +L+ DE + DP + LL L
Sbjct: 460 IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519
Query: 181 SGRTILITTH 190
G+TI+I +H
Sbjct: 520 QGKTIIIISH 529
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLL--YLAESGRTI 185
K LSGG++RRV+L LL P++L+LDEPT+ +D AE + W L +L + T+
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAW---LEQFLHDYPGTV 213
Query: 186 LITTH 190
+ TH
Sbjct: 214 VAVTH 218
|
Length = 556 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 17 RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ 76
R YVL L + ++ + +++G SG GKTTLL I G G + + K +
Sbjct: 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449
Query: 77 LGFMPQQI----SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNHFKRKC 130
+ PEF ++ + G + +I +A A+L ++RK
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL----YRRKF 505
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITT 189
LS GQ+ R LA L P +L++DE + +D + A + + LA E+G T+++ T
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 190 H 190
H
Sbjct: 566 H 566
|
Length = 593 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 29/147 (19%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ-QISLYPEF 90
VQ+ +L+G +GCGKTTLL + GQ + G IH +K ++ + Q + L PE
Sbjct: 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH--CGTKLEVAYFDQHRAELDPEK 398
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAE----------YLQALLHLNHFKRK---CGSLSGGQ 137
T+ + +L + K++ YLQ L H KR +LSGG+
Sbjct: 399 TVMD-----------NLAEGKQEVMVNGRPRHVLGYLQDFLF--HPKRAMTPVKALSGGE 445
Query: 138 QRRVSLAITLLHDPELLILDEPTSGID 164
+ R+ LA L LLILDEPT+ +D
Sbjct: 446 RNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIH-------------LSITSKKQL-----GFMPQ 82
++G SG GK+TLL C+ G+ + G LS +++L GF+ Q
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93
Query: 83 ------QISLYPEFTIDEMICYYGLI-YGMSLQQIKEKA-EYLQAL-LHLNHFKRKCGSL 133
++ + I E + G YG I+ A ++L+ + + +
Sbjct: 94 NPRDGLRMRVSAGANIGERLMAIGARHYG----NIRATAQDWLEEVEIDPTRIDDLPRAF 149
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYI 192
SGG Q+R+ +A L+ P L+ +DEPT G+D + + + L L + G ++I TH +
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209
Query: 193 DEAK-KSHMIGLMRKGILLE 211
A+ + + +M++G ++E
Sbjct: 210 GVARLLAQRLLVMQQGRVVE 229
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
LSGGQ++R+S+A LL + E+LILD+ S +D +I ++L E GRT++I+ H +
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHRL 510
Query: 193 DEAKKSHMIGLMRKGILLEESPPKVLLE 220
++ I +M+ G + + L +
Sbjct: 511 SALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
LSGG+++R+++A LL DP +LILDE TS +D V E L GRT I H
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALD-VETEAKVKAALDELMKGRTTFIIAHR 529
Query: 192 IDEAKKSHMIGLMRKGILLE 211
+ + + I + G ++E
Sbjct: 530 LSTVRNADRILVFDNGRVVE 549
|
Length = 588 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 42 LGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101
+G +G GKTTLL + G+ + G + S +G+ Q + +F D L
Sbjct: 351 IGENGVGKTTLLRTLVGELEPDSGTVKWS--ENANIGYYAQDHA--YDFENDL-----TL 401
Query: 102 IYGMSLQQIKEKAEYLQA--------LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPEL 153
MS Q +++ + QA L + K+ LSGG++ R+ ++ P +
Sbjct: 402 FDWMS--QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459
Query: 154 LILDEPTSGID 164
L++DEPT+ +D
Sbjct: 460 LVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-07
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 62/235 (26%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL-------LSCITGQNV 61
I VEN R++ LP VL + V+ ++G +G GK+TL L G+
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISL-----------YPEFTIDEMICYYGLIYGMSLQ 108
++G +I + + + L +PQ +L + E++ +E IYG +L+
Sbjct: 67 IDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE-------IYG-ALR 118
Query: 109 QIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID---- 164
+ E +LS GQ++ + LA LL P +L+LDE T+ ID
Sbjct: 119 -VSEGGL----------------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 165 ----PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215
I EE + TIL H + I +M G + E P
Sbjct: 162 ALIQKTIREEF---------TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-07
Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++V N Y S L L + + + + ++G GCGK++LL I G+ G +H
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 69 LSITSKKQLGFMPQQI-SLYP-----------EFTIDEMICYYGLIYGMSLQQIKEKAEY 116
S ++ + F + + Y T++E I + G + + A
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFNKQRYKAVTDACS 118
Query: 117 LQALLHLNHF--KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
LQ + L F + + G +LSGGQ++R+ +A L + ++ LD+P S +D +++
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 171 IWNH--LLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207
+ L +L + RT+++ TH + + I M+ G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 45/196 (22%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ------ 76
P +++ +T+Q +L+G SG GK+T+ + G G I +++
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 77 ---LGFMPQQISLYPEFTIDEMI-------------------CYYGLIYGMSLQQIKEKA 114
+ + Q I L+ E T+ + + + +I E A
Sbjct: 552 ANSVAMVDQDIFLF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610
Query: 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
E +LSGGQ++R+ +A L+ +P +LILDE TS +DP + I
Sbjct: 611 E-------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII--- 654
Query: 175 LLYLAESGRTILITTH 190
L G T +I H
Sbjct: 655 DDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 30/167 (17%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+LGA+G GK+TLL + Q ++ G + +++ + ++PQQ + T+ I ++
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEG----RVWAERSIAYVPQQAWIM-NATVRGNILFFD 745
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFK---------------RKCGSLSGGQQRRVSLAI 145
+E A L + ++ + K +LSGGQ+ RVSLA
Sbjct: 746 ----------EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192
+ + ++ +LD+P S +D + E + A +G+T ++ TH +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
|
Length = 1560 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTH 190
SLSGGQ++R+++A LL +P++L+LDE TS +D + I ++ + + +TI+ H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 191 YIDEAKKSHMI 201
I K+S I
Sbjct: 1418 RIASIKRSDKI 1428
|
Length = 1466 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSKKQLGFMPQQISLYP 88
+ + +LG +G GKTT + + G V+ G L ++ K PQ IS
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDLKVSYK------PQYISPDY 414
Query: 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148
+ T+++++ + K E ++ L + +R LSGG+ +RV++A L
Sbjct: 415 DGTVEDLL---RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471
Query: 149 HDPELLILDEPTSGIDP---VIAEEIWNHLLYLAESGRTILITTHYI 192
+ +L +LDEP++ +D +I ++ + + +T L+ H I
Sbjct: 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIE--NNEKTALVVDHDI 516
|
Length = 591 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------------QNVLNGGNIHL 69
+L + +TV+K I++++G +G GK+TL I G Q++L L
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE-----L 69
Query: 70 SITSKKQLG-FMPQQISLYPE----FTIDEMI-------CYYGLIYGMSLQQIKEKAEYL 117
+ + G F+ Q YPE + E + + L + +
Sbjct: 70 EPDERARAGLFLAFQ---YPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 118 QALLHLNHFKRKCG---SLSGGQQRRVSLAITLLHDPELLILDEPTSGID----PVIAEE 170
ALL ++ SGG+++R + L +P+L ILDE SG+D ++AE
Sbjct: 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 171 IWNHLLYLAESGRTILITTHY 191
I L E R+ LI THY
Sbjct: 187 INR----LREPDRSFLIITHY 203
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS------ITSKKQL-- 77
LD + + V+ +I++L+G +G GK+TLL C+ G + G+I +SK+ L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 78 --GFMPQQISLYPEFTI-DEMICYYGLIYGMSLQQIK----EKAEYLQALLHLNHFKRKC 130
+ Q+++L + ++ D M GM + Q K KA + + + ++ + K
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKV 132
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY----LAESGRTIL 186
+LS Q + + +A ++ +++I+DEPTS + E+ NHL L E G I+
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS----LTEKEVNHLFTIIRKLKERGCGIV 188
Query: 187 ITTHYIDEAKK-SHMIGLMRKG 207
+H ++E + I ++R G
Sbjct: 189 YISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--GGNIHLSITSKKQLGFMPQQISLYPE 89
+ + + ++G +G GKTT + G VL G + + + + PQ I +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAG--VLKPDEGEVDPELK----ISYKPQYIKPDYD 414
Query: 90 FTIDEMICYYGLIYGMSLQQIKEK--AEYLQAL----LHLNH-FKRKCGSLSGGQQRRVS 142
T++++ L+ I + + Y ++ L L + LSGG+ +RV+
Sbjct: 415 GTVEDL-----------LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVA 463
Query: 143 LAITLLHDPELLILDEPTSGID 164
+A L D +L +LDEP++ +D
Sbjct: 464 IAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
AI V+ R+ P +LD + + ++ +++G SG GK+TLL + G G++
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510
Query: 68 --------HLSITS-KKQLGFMPQQISLYPEFTIDEMIC---YYGLIYGMSLQQIKEKAE 115
L + + ++QLG + Q L +I E I L ++ AE
Sbjct: 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAE 569
Query: 116 YLQAL---LHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
++A+ +H G+LSGGQ++R+ +A L+ P +L+ DE TS +D
Sbjct: 570 DIRAMPMGMH-TVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
G LSGG Q++V++A L+ P++LILDEPT G+D +EI+
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435
|
Length = 501 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC---------------ITGQNVLNGGNIH- 68
+L L + ++ + +LLG +G GK+TLL +TG LNG +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 69 LSITSKKQL-GFMPQQISLYPEFTIDEMI---CY-YGLIYGMSLQQIKEKAEYLQALLHL 123
+ +L +PQ F+ E++ Y + G + E A AL
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 124 NHF-KRKCGSLSGGQQRRVSLAITL--LH-------DPELLILDEPTSGID 164
R +LSGG+ RV A L L P L+LDEPT+ +D
Sbjct: 136 TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
|
Length = 272 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIHLSITSK---KQLGFMP 81
+ +++G +G GKTTL++ + GQ +++G +I+ ++T + K + +
Sbjct: 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN-TVTRESLRKSIATVF 415
Query: 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA----LLHLNHFKRKCGS----L 133
Q L+ +I E I G + +++ E A+ A L N + G L
Sbjct: 416 QDAGLFNR-SIRENIRLGR--EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193
SGG+++R+++A +L + +L+LDE TS +D + N + L ++ RT I H +
Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN-RTTFIIAHRLS 531
Query: 194 EAKKSHMIGLMRKGILLE 211
+ + ++ + +G L+E
Sbjct: 532 TVRNADLVLFLDQGRLIE 549
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191
L+ G+ ++V +AI L + P LLI DEPT+ ++P +I+ L L + S TIL+ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+ + + I ++ G +E +P + L+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A L L+ SLSGG R+ +L L+ +P++L+LDEPT+ +D
Sbjct: 144 AQLGLDPDAALS-SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-06
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 43 GASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQ---------LGFMPQQISLYPEFTID 93
G +G GKTTLL + G + G I + + + LG +P L + +
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100
Query: 94 EMICYYGLIYGMSLQQIKEKAEYLQALL-HLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
E + + ++G +Q+ A + L + + R+ LS GQ++R++LA L
Sbjct: 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ---LSAGQKKRLALARLWLSPAP 157
Query: 153 LLILDEPTSGIDP----VIAEEIWNHLLYLAESGRTILITTH 190
L +LDEP + +D ++ I HL G L+TTH
Sbjct: 158 LWLLDEPYANLDLEGITLVNRMISAHL----RGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 52/220 (23%), Positives = 111/220 (50%), Gaps = 28/220 (12%)
Query: 8 AIRVENAYKRHSSKLPY-VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLNGG 65
AI ++N Y SK L + + V ++ +++G++G GKT+L+S + G+ +
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-EKAEYLQALLH-- 122
++ + T + ++PQ +S T+ + I ++G + E+A + AL H
Sbjct: 674 SVVIRGT----VAYVPQ-VSWIFNATVRDNI-----LFGSPFDPERYERAIDVTALQHDL 723
Query: 123 -------LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175
L + ++SGGQ++RVS+A + + ++ I D+P S +D + ++++
Sbjct: 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783
Query: 176 LYLAESGRT-ILITT--HYIDEAKKSHMIGLMRKGILLEE 212
+ G+T +L+T H++ + + I L+ +G++ EE
Sbjct: 784 IKDELRGKTRVLVTNQLHFLSQVDR---IILVHEGMIKEE 820
|
Length = 1622 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTL---LSCI------TGQNVLNGGNI---HLSITS 73
LD + + V+ I SL G +G GK+TL LS + G+ + G + ++ T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 74 KKQLGFMPQQISLYPEFTIDEMI------CYYGLIYGMSLQQIKEKAEYLQALLHLN-HF 126
+ + + Q+++L E ++ E I G+ M + +A+ L A L L+ +
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGI---MDYDAMYLRAQKLLAQLKLDINP 137
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
G+L GQQ+ V +A L LLILDEPT+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172
|
Length = 506 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85
L L + S ++ +GA+G GK+ L + G+ L G + +L F Q
Sbjct: 21 LPSLTLNAGDS--WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78
Query: 86 LYPEF-----------------TIDEMICYYGLIYGMSLQQIKEKA--EYLQALLHLNHF 126
+ E+ T E+I ++K+ A E L +
Sbjct: 79 VSDEWQRNNTDMLSPGEDDTGRTTAEII----------QDEVKDPARCEQLAQQFGITAL 128
Query: 127 -KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAESGRT 184
R+ LS G+ R+ L L+ +P+LLILDEP G+D V + + LL L +SG T
Sbjct: 129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD-VASRQQLAELLASLHQSGIT 187
Query: 185 ILITTHYIDE 194
+++ + DE
Sbjct: 188 LVLVLNRFDE 197
|
Length = 490 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 44/173 (25%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---TGQNVLNGG---NIHLSITSKKQLGF 79
L L +++ + + + G SG GK+TL++ +G+ L + QL F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF 70
Query: 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR 139
+ ID GL Y L L +K +LSGG+ +
Sbjct: 71 L-----------ID-----VGLGY-----------------LTLG---QKLSTLSGGELQ 94
Query: 140 RVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
RV LA L +P L ILDEP++G+ ++ + L + G T+++ H
Sbjct: 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNI-------------HLSITSKKQL-----GFMPQ 82
++G SG GKTTLL CI+G+ + G + +S +++L GF+ Q
Sbjct: 37 IVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96
Query: 83 --------QISL---YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL-LHLNHFKRKC 130
Q+S E + +YG I E ++L+ + + L+
Sbjct: 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIR-------AEAQDWLEEVEIDLDRIDDLP 149
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITT 189
+ SGG Q+R+ +A L+ P L+ +DEPT G+D + + + L L E G ++I T
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 190 HYIDEAK-KSHMIGLMRKGILLE 211
H + A+ + + +M++G ++E
Sbjct: 210 HDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK--RKCGSLSGGQQRRVSLAITLLH 149
I EM Y + + I EK L +L L++ R SLSGG+ +R+ LA LL
Sbjct: 768 ILEMTAYEAEKFFLDEPSIHEKIHALCSL-GLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826
Query: 150 ---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
P L +LDEPT+G+ + + L L G T++I H
Sbjct: 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
Length = 1809 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 1 MDLKDKCAIRVEN-AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKT-TLLSCI-- 56
+D +D A+ N A+ + K+ V + L ++Q+ +++G SG GK+ T L+ +
Sbjct: 7 LDARDVLAVENLNIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRL 65
Query: 57 ---TGQNVLNGGN---------IHLSITSKKQLG----------FMPQQISLYPEFTIDE 94
G V I LS S Q+ F SL P FT+ E
Sbjct: 66 LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125
Query: 95 MIC-----YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH 149
I + G ++ + K + ++ R LSGG ++RV +A+ L
Sbjct: 126 QIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185
Query: 150 DPELLILDEPTSGIDPVIAEEI 171
P +LI DEPT+ +D I +I
Sbjct: 186 RPAVLIADEPTTALDVTIQAQI 207
|
Length = 623 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+I+ E+ + R+ LP VL L V S ++G +G GK+++L+ + G+
Sbjct: 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAE 115
+++ ++ +T ++ L +PQ L+ F ID + L + E+A
Sbjct: 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDP----FSEHNDADLWEALERA- 1348
Query: 116 YLQALLHLNHFKRKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+++ ++ N F + S GQ++ +SLA LL ++L+LDE T+ +D
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I + +S T+L+ H ++ I ++ G +LE P+ LL +
Sbjct: 1409 LIQRTIREEFKSC-TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
|
Length = 1495 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 77/221 (34%)
Query: 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH--- 68
N +K + LP T + + +LG +G GK+T L + G+ N G
Sbjct: 86 VNGFKLYR--LP--------TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 69 -------------------------LSITSKKQLGFMPQQISLYPEF---TIDEMICYYG 100
L K PQ + L P+ + E+
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEGELRAVHK------PQYVDLIPKVVKGKVGEL----- 184
Query: 101 LIYGMSLQQIKE--KAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157
L+++ E K + + L L N R LSGG+ +RV++A LL D ++ D
Sbjct: 185 ------LKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFD 238
Query: 158 EPTSGID--------PVIAEEIWNHLLYLAESGRTILITTH 190
EP+S +D VI E LAE G+ +++ H
Sbjct: 239 EPSSYLDIRQRLNAARVIRE--------LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH- 190
LS GQ++R++L + L + ++L+LDE + DP E + LL L E G+TI +H
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 191 --YIDEAKKSHMIGLMRKGILLE 211
Y A + + MR G L E
Sbjct: 510 DHYFIHADR---LLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
+LD T+ L+G +GCGK+TLL+ + + +GG+ + QL ++ Q+
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY--TFPGNWQLAWVNQET 73
Query: 85 SLYP----EFTIDEMICYYGLIYGMSLQQIKE------------KAEYLQA--------- 119
P E+ ID Y L L E K + + A
Sbjct: 74 PALPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS 131
Query: 120 LLHLNHF-----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS--GIDPVIAEEIW 172
LLH F +R SGG + R++LA L+ +LL+LDEPT+ +D VI E W
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
|
Length = 638 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 50/132 (37%)
Query: 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92
V++ + ++G +G GKTT + + GQ + NG N + + PQ I L
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYIDL------ 72
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152
SGG+ +RV++A LL +
Sbjct: 73 -----------------------------------------SGGELQRVAIAAALLRNAT 91
Query: 153 LLILDEPTSGID 164
+ DEP++ +D
Sbjct: 92 FYLFDEPSAYLD 103
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190
SGG ++RV +A+ LL P+LLI DEPT+ +D + +I L L E I++ TH
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
|
Length = 330 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 20/224 (8%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL--------SITSKKQ 76
VL + ++V +L+G +G GK+TL S + G L G I L S + +Q
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415
Query: 77 LGFMPQQ------ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC 130
M QQ + T+ I + + Q+ E A L L+ +
Sbjct: 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLY-TPLGEQG 474
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LS GQ++ ++LA L+ P++LILDE T+ ID + I L T+++ H
Sbjct: 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAH 533
Query: 191 YIDEAKKSHMIGLMRKGILLEESPPKVLLEK----YNMKSLEDV 230
+ ++ I ++ +G +E+ + LL + M L+
Sbjct: 534 RLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577
|
Length = 592 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-05
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 44/167 (26%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
++G G GKTTL + + L + + I
Sbjct: 7 IVGPPGSGKTTLARALARE---------LGPPGGGVIYIDGEDI---------------- 41
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
E + L L K S SG + R++LA+ P++LILDE T
Sbjct: 42 -------------LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEIT 88
Query: 161 SGIDPVIAEEIW------NHLLYLAESGRTILITTHYIDEAKKSHMI 201
S +D + LL +E T+++TT+ + + +
Sbjct: 89 SLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 130 CGSLSGGQQRRVSLAITL---LHDPE-LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
LSGG++ +LA+ L P L ILDE G+DP + + +L G +
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 186 LITTHY 191
++ TH
Sbjct: 135 IVITHL 140
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191
L+ G+ ++V +AI L + P LLI DEPT+ ++P +I+ L L + + TIL+ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 192 IDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+ + + I ++ G +E +P K L+
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 6e-05
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191
+ S GQ++ LA + +LI+DE T+ ID + E I ++ A + RT++ H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVTIAHR 214
Query: 192 IDEAKKSHMIGLMRKGILLE-ESPPKVLLEK 221
+ + ++ ++ +GIL+E ++P +L ++
Sbjct: 215 VSTILDADLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT-IDEMIC 97
Y L+GA+GCGK+T + + G + GN+ S+ ++LG + Q + EFT +D +I
Sbjct: 30 YGLIGANGCGKSTFMKILGGDLEPSAGNV--SLDPNERLGKLRQDQFAFEEFTVLDTVIM 87
Query: 98 YYG----------LIY---------GMSLQQIKEK-AEY---------LQALLHL----- 123
+ IY GM + ++ K AE + LL +
Sbjct: 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147
Query: 124 NHFKRKCGSLSG---GQQRRVSLAITLLHDPELLILDEPTSGID 164
H+ G +S G + RV LA L +P++L+LDEPT+ +D
Sbjct: 148 QHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 131 GSLSGGQQRRVSLAITL-LHD-------PELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+LSGG++ SLA+ L L D ELL LDEP +D E++ L L G
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873
Query: 183 RTILITTH 190
R I+I +H
Sbjct: 874 RQIIIISH 881
|
Length = 908 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
LSGGQ++R+S+A ++ +P++LILDE TS +D
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGID-PVIAEEIWNHLLYL-----AESGRTILI 187
SGG Q+R+ +A L+ P L+ +DEPT G+D V A LL L E G ++I
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR-----LLDLLRGLVRELGLAVVI 207
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLE 211
TH + A+ +H + +M++G ++E
Sbjct: 208 VTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--------HLSITSKKQL 77
+ + T+++ +++G +G GK+TL + G G I + + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 78 GFMPQQ---ISLYPEFTIDEMICY-YGLIYGMSLQQIKEKA-EYLQAL-LHLNHFKRKCG 131
M Q SL P I +++ + L + +Q +++ E L+ + L +H
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH 148
Query: 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
L+ GQ++RV+LA L+ P+++I DE + +D + ++ N +L L E G + + T
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 191 YIDEAKK-SHMIGLMRKGILLEESPPKVLL 219
+I K S + +M +G ++E +L
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQ--ALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148
T+ E+ Y L++ + I+E+ +L L +L R +LSGG+ +R+ LA T +
Sbjct: 97 TVTEIYDYLRLLF--ARVGIRERLGFLVDVGLGYLT-LSRSAPTLSGGEAQRIRLA-TQI 152
Query: 149 H---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
L +LDEP+ G+ P + + L L + G T+L+ H
Sbjct: 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 134 SGGQQRRVSLAITLLHDPELLILDEPTSGID----PVIAEEIWNHLLYLAESGRTILITT 189
SGG+++R + L D EL ILDE SG+D +IAE I L S +I++ T
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK----LMTSENSIILIT 208
Query: 190 HY 191
HY
Sbjct: 209 HY 210
|
Length = 252 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHY 191
+SGG +R+ +A+ LL + +I DEPT+ +D V I + L + + +L+ TH
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 192 ID-EAKKSHMIGLMRKGILLEESP 214
+ A+ + + +M G ++E+
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGD 224
|
Length = 254 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 33/259 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITS---------K 74
VL+ + ++ LLG +G GK+TLLS +LN G+I + S +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--RLLNTEGDIQIDGVSWNSVPLQKWR 76
Query: 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG--- 131
K G +PQ++ ++ T + + YG S ++I + AE + + F +
Sbjct: 77 KAFGVIPQKVFIFSG-TFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132
Query: 132 -----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
LS G ++ + LA ++L ++L+LDEP++ +DP+ + I L A + T++
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVI 191
Query: 187 ITTHYIDEAKKSHMIGLMRKGILLE-ESPPKVLLEKYNMK---SLEDVFLLLSSKQQHDR 242
++ H I+ + ++ + + + +S K+L EK + K S D L + +
Sbjct: 192 LSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLF---PRRNS 248
Query: 243 IEQRRKSFLWPIQAIQEHT 261
+ +RK IQA+QE T
Sbjct: 249 SKSKRKPRP-QIQALQEET 266
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 64/204 (31%)
Query: 6 KC---AIRVENAYKRHSSKLPYVLDKLCM--------------TVQKSTIYSLLGASGCG 48
KC AI + N LP L++ + ++ + +LG +G G
Sbjct: 60 KCPFDAISIVN--------LPEELEEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIG 111
Query: 49 KTTLLSCITGQNVLNGGNI--------------------HLSITSKKQLGFM--PQQISL 86
KTT + ++G+ + N G+ + ++ + PQ + L
Sbjct: 112 KTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDL 171
Query: 87 YPEF---TIDEMICYYGLIYGMSLQQIKE--KAEYLQALLHLNHF-KRKCGSLSGGQQRR 140
P+ + E+ L+++ E K + + L L + R LSGG+ +R
Sbjct: 172 IPKVFKGKVREL-----------LKKVDERGKLDEVVERLGLENILDRDISELSGGELQR 220
Query: 141 VSLAITLLHDPELLILDEPTSGID 164
V++A LL D + DEPTS +D
Sbjct: 221 VAIAAALLRDADFYFFDEPTSYLD 244
|
Length = 590 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186
+ + SGG + R++LA L +P+LL+LDEPT+ +D + +W YL + +T +
Sbjct: 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLE-TYLLKWPKTFI 395
Query: 187 ITTH 190
+ +H
Sbjct: 396 VVSH 399
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFM-----PQQ--ISLY 87
LLG +G GK+TL+ + G+ G I L+ K QL F+ P Q L
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA 402
Query: 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL 147
P+ ++ Y G +G ++ E+ SGG++ R+ LA+ +
Sbjct: 403 PQELEQKLRDYLGG-FGFQGDKVTEE----------------TRRFSGGEKARLVLALIV 445
Query: 148 LHDPELLILDEPTSGID 164
P LL+LDEPT+ +D
Sbjct: 446 WQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 132 SLSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLY----LAESGRT 184
+LSGG+ +R+ LA L L ILDEPT+G+ ++I LL L + G T
Sbjct: 829 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH---FDDI-KKLLEVLQRLVDKGNT 884
Query: 185 ILITTHYIDEAK 196
+++ H +D K
Sbjct: 885 VVVIEHNLDVIK 896
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 30/235 (12%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+I+ E+ R+ +LP VL L + S ++G +G GK+++L+ + G+
Sbjct: 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAE 115
+++G +I + +K LG +PQ L+ F +D + SL++ K
Sbjct: 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDV 1356
Query: 116 YLQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGID--------PV 166
+ L L+ + G + S GQ++ +SLA LL ++L+LDE T+ +D
Sbjct: 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416
Query: 167 IAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I EE T+LI H ++ I ++ G ++E P+ LL
Sbjct: 1417 IREEF---------KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462
|
Length = 1622 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 36/141 (25%)
Query: 40 SLLGASGCGKTTLLSCITGQ------NVLNGGNIHLSITSKKQ----------LGFMPQQ 83
+++G +G GK+T+L I+G+ V + +++ S+ L +M +
Sbjct: 539 AMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRC 598
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143
PE + + +G+ ++LQ + +LSGGQ+ RV+
Sbjct: 599 FPGVPEQKLRAHLGSFGVTGNLALQPMY--------------------TLSGGQKSRVAF 638
Query: 144 AITLLHDPELLILDEPTSGID 164
A P +L+LDEP++ +D
Sbjct: 639 AKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 111 KEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID----- 164
+ K + L L L H R LSGG+ +RV++A L D + DEP+S +D
Sbjct: 117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 165 ---PVIAEEIWNHLLYLAESGRTILITTH 190
+I E LAE +L+ H
Sbjct: 177 NAARLIRE--------LAEDDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNVLNG 64
V+ +++ VL L +V+ LLG +G GK+TLLS + G+ ++G
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDG 1279
Query: 65 ---GNIHLSITSKKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
++ L T +K G +PQ++ ++ +D + S ++I + AE +
Sbjct: 1280 VSWNSVTLQ-TWRKAFGVIPQKVFIFSGTFRKNLDPYEQW-------SDEEIWKVAEEVG 1331
Query: 119 ALLHLNHFKRKCG--------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ F K LS G ++ + LA ++L ++L+LDEP++ +DPV +
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL-Q 1390
Query: 171 IWNHLLYLAESGRTILITTHYID 193
I L + S T++++ H ++
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHRVE 1413
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 41/173 (23%), Positives = 60/173 (34%), Gaps = 39/173 (22%)
Query: 43 GASGCGKTTLLSCI----TGQNVLNG-GNIHLS--ITSKKQLGFMPQQISLYPEFTID-- 93
G +G GKTT++ + TG+ N G H I + Q+ L F
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRA----QVKL--AFENANG 82
Query: 94 -EMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAI------T 146
+ L + I L G SGG++ SL I T
Sbjct: 83 KKYTITRSL--AILENVIFCHQGESNWPLLDMR-----GRCSGGEKVLASLIIRLALAET 135
Query: 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-----GRTILITTHYIDE 194
+ +L LDEPT+ +D E I L + E +++ TH DE
Sbjct: 136 FGSNCGILALDEPTTNLDE---ENIEESLAEIIEERKSQKNFQLIVITH--DE 183
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 132 SLSGGQQRRVSLAITLLH---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188
+LSGG+ +R+ LA L L ILDEPT+G+ +++ L L + G T+++
Sbjct: 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228
Query: 189 THYIDEAK 196
H +D K
Sbjct: 229 EHNLDVIK 236
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 10 RVE--NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
RVE N R+ L VL + +T+ ++G +G GK++L + G+
Sbjct: 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343
Query: 61 VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL----QQIKEKAEY 116
+++G NI +K L + +I++ P+ + + + G + M+L Q E+ +
Sbjct: 1344 IIDGLNI-----AKIGLHDLRFKITIIPQ----DPVLFSGSLR-MNLDPFSQYSDEEVWW 1393
Query: 117 LQALLHLNHF--------KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
L HL F +C +LS GQ++ V LA LL ++L+LDE T+ +D
Sbjct: 1394 ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSC--------ITGQNVLNGGNIHLSITSKKQ 76
+L L + V+ +++++G +G GK+TL + +TG V G L ++ + +
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 77 LG---FMPQQISLYP------------EFTIDEMICYYGL--IYGMSLQQ-IKEKAEYLQ 118
G FM Q YP + ++ + Y G + Q ++EK L+
Sbjct: 76 AGEGIFMAFQ---YPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 119 ALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
L G SGG+++R + + +PEL ILDE SG+D + + + + L
Sbjct: 133 MPEDLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 179 AESGRTILITTHY 191
+ R+ +I THY
Sbjct: 192 RDGKRSFIIVTHY 204
|
Length = 248 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0059|consensus | 885 | 100.0 | ||
| KOG0055|consensus | 1228 | 100.0 | ||
| KOG0057|consensus | 591 | 100.0 | ||
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| KOG0061|consensus | 613 | 100.0 | ||
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.98 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| KOG0065|consensus | 1391 | 99.97 | ||
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.96 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.96 | |
| KOG0927|consensus | 614 | 99.96 | ||
| KOG0927|consensus | 614 | 99.96 | ||
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.96 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.95 | |
| KOG2355|consensus | 291 | 99.94 | ||
| KOG0062|consensus | 582 | 99.94 | ||
| KOG0062|consensus | 582 | 99.94 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.93 | |
| KOG0066|consensus | 807 | 99.93 | ||
| KOG0060|consensus | 659 | 99.92 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.91 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.89 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.89 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.89 | |
| KOG0065|consensus | 1391 | 99.88 | ||
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.88 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.87 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.87 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.87 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.86 | |
| KOG0064|consensus | 728 | 99.85 | ||
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| KOG0066|consensus | 807 | 99.84 | ||
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.82 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.8 | |
| KOG0063|consensus | 592 | 99.79 | ||
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.75 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.74 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.72 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.7 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.66 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.62 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.6 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.59 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.58 | |
| KOG0063|consensus | 592 | 99.57 | ||
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.56 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.55 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.55 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.54 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.52 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.51 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.49 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.49 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.48 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.47 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.47 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.47 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.47 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.46 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.46 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.42 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.41 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.37 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.35 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.34 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.31 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.31 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.3 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.3 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.24 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.23 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.2 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.13 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.06 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.06 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.05 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 99.02 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.01 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.0 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.99 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.95 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.95 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.93 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.92 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.91 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.89 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.89 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.83 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.83 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 98.82 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.8 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.76 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.75 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.69 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.66 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.61 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.6 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.6 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.58 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.56 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.53 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.52 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.49 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.49 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.48 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.47 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.47 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.46 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.46 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.42 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.42 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.41 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.41 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.41 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.38 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.37 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.35 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.34 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.33 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-65 Score=451.87 Aligned_cols=219 Identities=31% Similarity=0.511 Sum_probs=204.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCe
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ 76 (321)
+||+++|++|+||+ ..+|++||++|++||+++|+||||||||||||||+||.+|++|+|.++|.+ +++
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 47999999999999 779999999999999999999999999999999999999999999999953 267
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+|+|||++++||.+||.||+.+.. ...+.+++++++++.++++.+++.+ .+.+|.+|||||||||||||||+.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 999999999999999999998865 3467888899999999999999975 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccH
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSL 227 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l 227 (321)
++|||||+|||+...++++.+++++++|+|.+++||++.++.. ||||++|++|+++++|+|++++.++..+..
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~ 232 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999999988 999999999999999999999877554433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-61 Score=435.08 Aligned_cols=220 Identities=33% Similarity=0.502 Sum_probs=206.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|+||+|++ +.+++|+||+|++||+++++|||||||||+||||.+|++|++|+|.++|++. ++||
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 7999999999998 7799999999999999999999999999999999999999999999999864 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||-|...+||++||.||+.+...+.+.++++.++++++++++++++. .+|+|++|||||||||.+||||+.+|++++
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 99999999999999999999988888888899999999999999963 589999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLED 229 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~ 229 (321)
+||||++|||.+|.++.+.+.++.+ -|+|||++|||++|+-. +|||++|++|+++..++|++++.++..+.+++
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~ 234 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVED 234 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHH
Confidence 9999999999999999999999975 59999999999999977 99999999999999999999998766544444
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=438.43 Aligned_cols=217 Identities=28% Similarity=0.429 Sum_probs=204.6
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
||++++++|.|+.+ ...+|+||||+|++||++||+|+||||||||+||+.+|.+|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 69999999999862 24699999999999999999999999999999999999999999999999653
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++||++||+++++...||.+|++|+..+.+.++++.++++.++++++++++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 689999999999999999999999999999999999999999999999976 68999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhccc
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~ 224 (321)
++|++|||||+|||...+.++++|++++ +-|.||+++||.|+.++. |||+++|++|++++.|+..+++.++..
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 9999999999999999999999999998 459999999999999988 999999999999999999999877543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-60 Score=415.51 Aligned_cols=227 Identities=27% Similarity=0.484 Sum_probs=212.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||++.+++|+|+.. .++++||||++++||++||+|||||||||+||+|++++.|++|.|+++|.+. ++||.
T Consensus 1 Ml~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 68999999999983 4599999999999999999999999999999999999999999999998653 78999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+|.+..+|..||++||+.|+++++++...+.+++.+++.+.+++.. .|++++++|.||||||+|||||+++|++++|||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 9988999999999999999999999999999999999999999975 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHHHhh
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLS 235 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~~~~ 235 (321)
||||||..+++.+.+.+++++++|++||++||++++++. |||++++++|++++.|+++++.......++++.|....
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f~~~l 237 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFAL 237 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHHHHhh
Confidence 999999999999999999999899999999999999987 99999999999999999999987766677777765543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=435.24 Aligned_cols=213 Identities=40% Similarity=0.668 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 7 CAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.+++++|++|+|+ + +.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 3 ~~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred ceeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 4589999999999 6 6799999999999999999999999999999999999999999999998653 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+|+.+|++||+.|.+.+++.+....+++++++++.+++.. .++++++||+|||||++||+||+++|+++||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999998765555678899999999975 5788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++.+++++|++++++| +||++|||.+++++. ||||++|++|++++.|+++++...
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999876 899999999999988 999999999999999999987654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=416.75 Aligned_cols=215 Identities=31% Similarity=0.426 Sum_probs=201.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
.++.|++++++++||+ +.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|.+.
T Consensus 5 ~~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 5 PEPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred CcceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 3678999999999999 7799999999999999999999999999999999999999999999998764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++|++||+.++|..+||+||+.|+.+-+ +++++..++.+..-++.+|+.. .+++|.+|||||++|++||||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 67999999999999999999999987665 4677788888888899999964 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++++||||+||||.+...|-++|+++++. |.|++++|||++.+.. |||++++.+|+|++.|+++++.+.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999854 9999999999999977 999999999999999999999763
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=425.52 Aligned_cols=221 Identities=29% Similarity=0.439 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++++++|++++|++ +.+++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|++. +++
T Consensus 1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 36999999999998 7799999999999999999999999999999999999999999999999764 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|||||.+...+.+||+|.+.++...+ ....++.++.++++++.+++.+ .+|.+.+|||||||||.|||||+++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 99999998888999999998764432 2223344557888999999976 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~ 230 (321)
+|+||||||.||+.++.++++++++++ ++|+|||+++||++.+.+ ||++++|++|++++.|+|+++.+. +.+.++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~---e~l~~V 235 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREV 235 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH---HHHHHH
Confidence 999999999999999999999999998 569999999999999976 999999999999999999988754 456666
Q ss_pred HH
Q psy106 231 FL 232 (321)
Q Consensus 231 ~~ 232 (321)
|.
T Consensus 236 yg 237 (258)
T COG1120 236 YG 237 (258)
T ss_pred hC
Confidence 53
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=437.74 Aligned_cols=215 Identities=31% Similarity=0.459 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGF 79 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~ 79 (321)
.+|+++|++|+||+ ..+++++||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++. +.||+
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 47999999999998 3399999999999999999999999999999999999999999999999764 78999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|||+.++||.|||+||+.|+.+..+.++++.++++.+..+.+++++ ++++|.+|||||||||||||||+++|++++|||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999999999999999889999999999999999986 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|+|+||...+..+...|+++.+ -|.|+|.+|||..|+.. +||+++|++|+|...|+|.+++.++.
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 9999999999999999999975 49999999999999987 99999999999999999999987654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=430.76 Aligned_cols=214 Identities=35% Similarity=0.608 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.++|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 468999999999987 6799999999999999999999999999999999999999999999998753 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++++|+.||+.+.+..++.+..+..+++.++++.+++.. .++++++||+|||||++||+||+++|++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999998877777665666677888999999865 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.+++.++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999998779999999999999987 999999999999999999998654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=440.42 Aligned_cols=217 Identities=33% Similarity=0.491 Sum_probs=202.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
++.++++|++|+||+ ..+++|+||+|++||+++|+||||||||||||||+|+..|++|+|.++|++. +.||
T Consensus 3 ~~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 3 KPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred CceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 467999999999997 7799999999999999999999999999999999999999999999999874 7899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+|||+.++||+|||.||+.|+.+..+ .+.+++++++.+++++++++. .++++.+|||||||||||||||+.+|++|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 99999999999999999999988544 445668889999999999976 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhccc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~ 224 (321)
|||.|+||..-+.++...++++. +.|+|.|++|||.+|+.. +|||++|++|+|...|+|+++...+..
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 99999999999999999999987 569999999999999976 999999999999999999999887543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-58 Score=415.68 Aligned_cols=202 Identities=31% Similarity=0.463 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
.++++++++|.|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|... ..+|||||
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 46899999999998 7799999999999999999999999999999999999999999999999753 68999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.++|++||.||+.++....+.+.++.++++.++++.+++.. .+++|++|||||||||+|||||+.+|++|+||||++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999999988877677777788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEE
Q psy106 162 GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILL 210 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~ 210 (321)
+||..++..+.+.+.++. +.++||+++|||++|+-. +|||++|.+ |+|.
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999987 569999999999999977 999999999 4453
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=414.65 Aligned_cols=220 Identities=30% Similarity=0.444 Sum_probs=190.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+++|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+. .+|||
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 4679999999999973 599999999999999999999999999999999999999999999988642 57999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 80 MPQQISLY--PEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 80 v~Q~~~l~--~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|||...+. ..+||+|.+.++...+ +...++.++.++++++.+++.+ .++++++|||||+|||.|||||+++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 99976443 2369999998753221 2222334678899999999976 699999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+|+|||||+|+|+.++..|+++|++++++|+||+++|||++.+.. ||+|+.|+ +++++.|+++++.+. +.+...|
T Consensus 160 lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~---~~l~~~~ 235 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE---ENLEKAF 235 (254)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH---HHHHHHh
Confidence 999999999999999999999999999789999999999999966 99999997 678899999988653 3444444
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=405.92 Aligned_cols=203 Identities=30% Similarity=0.439 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
|++++|++|.|+.+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 578999999997532 3699999999999999999999999999999999999999999999998542
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc-CCCCccChHHHHHHHHHHHHhcC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK-RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~-~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++||||||+.+|.|++||.||+.++..+.+.+..+.+++++.+++.+++.+ .+ ++|.+|||||||||||||||+++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999887777665456677888999999974 44 88999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEE
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILL 210 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~ 210 (321)
|+++++||||.+||+.+.++++++++++++ .|+|||++|||.+.+..|||++.|++|++.
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999985 599999999999999999999999999943
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=427.56 Aligned_cols=214 Identities=34% Similarity=0.575 Sum_probs=196.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
.++|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 39 ~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred ceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 357999999999998 6799999999999999999999999999999999999999999999998752 569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++.+..+..++++.+++.+++.. .++++++||||||||++||+||+++|+++||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998776666555555566778889999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++..++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 197 DEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999998789999999999999977 999999999999999999998654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=426.39 Aligned_cols=219 Identities=29% Similarity=0.453 Sum_probs=201.8
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------C
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------K 75 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~ 75 (321)
|.++++|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 1 ~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred CCCCcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 345678999999999987 6699999999999999999999999999999999999999999999998753 6
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++||+||++.+|+++||+||+.|....++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999999999999999877666666667788899999999975 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||||++||+..+.++.+.|+++.+ .|+|+|++|||++++.. |||+++|++|+++..|+++++..++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999975 49999999999999976 99999999999999999999987643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=400.82 Aligned_cols=222 Identities=25% Similarity=0.427 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
+||+++||++.|+++ +.+|+||||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999999433 6799999999999999999999999999999999999999999999998542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYG--------LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~--------~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++|||+||++++.+.+||.+|+..+. .+.+...++.+..+.++++.+++.+ .-++..+|||||||||+|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 57999999999999999999998642 2345555555677778899999854 67889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||+++|+++|.|||+++|||.+.+.+++.|++++ ++|.|+|++.|+++.+.+ |||++-|++|+|+++|+++++.+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~--- 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD--- 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH---
Confidence 9999999999999999999999999999999998 569999999999999966 99999999999999999998643
Q ss_pred cccHHHHHHH
Q psy106 224 MKSLEDVFLL 233 (321)
Q Consensus 224 ~~~l~~~~~~ 233 (321)
..+.+.|..
T Consensus 238 -~~~~~iYg~ 246 (258)
T COG3638 238 -EALDEIYGN 246 (258)
T ss_pred -HHHHHHhcc
Confidence 345555543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=426.20 Aligned_cols=215 Identities=26% Similarity=0.434 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 7 CAIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
++|+++|++++| ++ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ++||
T Consensus 2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 369999999999 66 6699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+++||+||+.|.....+.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999999876656666666677889999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+..+++.|+++.++ |+|+|++|||++++.. ||++++|++|+++..|+++++.++..
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 999999999999999999998754 9999999999999976 99999999999999999999977643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=422.55 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=196.0
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++|+|+++ ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 68999999999631 24699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++|||+||++.+++.+||.||+.++....+.+..+.++++.++++.+++.+ .++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999998776656666666778889999999975 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||||||++|||.++..++++|++++++ |.|||++||+++.+.. |||+++|++|++++.|+++++....
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 99999999999999999999999999854 9999999999999976 9999999999999999999987653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=422.97 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=199.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
.++|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|++. +++|
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred CcEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 457999999999987 6699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+||.+||.||+.|.....+.+..+.+++++++++.++++. .++++.+|||||||||+|||||+.+|+++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999876666666666778899999999976 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+.++++.|+++.+ .|.|+|++|||++++.. |||+++|++|++++.|+++++.+.+.
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999875 49999999999999976 99999999999999999999987643
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=403.11 Aligned_cols=215 Identities=27% Similarity=0.495 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMP 81 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~ 81 (321)
+++++++|+|+||+ +.|++|+||++++|+++|++|||||||||++|+|+|+++|++|+|.++|.+. .+|||+|
T Consensus 1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 36899999999999 7799999999999999999999999999999999999999999999999764 5899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
.+..+|+.+||.|.+.|++.+.+++..+.++.++.+++.+++.. ..+++.+||.|++|++.+..|++|+|+++|||||+
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999999999999999999999999999999999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||.+.+.+.+.+.+++++|.|||+|||.|+.++. ||++++|++|+.+.+|+.+++.+.+.
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 9999999999999999999999999999999999988 99999999999999999999987543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=412.58 Aligned_cols=217 Identities=30% Similarity=0.487 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---cc-------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---SK-------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~~-------~~ 76 (321)
+||+++|++|.|++ ..+++|||++|++||.+|++||||||||||||+|+||+.|++|.|.++|+ +. ++
T Consensus 1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 36999999999999 77999999999999999999999999999999999999999999999998 42 68
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
||||||+..+|+.|||.+|+.|+..... .+..+.+.++.++++.+.++. .+++|.+|||||||||||||||+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999999999999999999999886542 235567888999999999987 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~ 225 (321)
|+||||+++||...++++...|+++.++ |.|.+++|||.+|+.. ||||++|++|+|...|+++++...+...
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999855 9999999999999977 9999999999999999999998765543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=412.66 Aligned_cols=214 Identities=33% Similarity=0.577 Sum_probs=194.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
..+|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred CcEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 457999999999987 6699999999999999999999999999999999999999999999998642 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++.+..+..++++.+++.+++.. .++++++||||||||++|||||+++|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987665555444444566777889999875 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+||||.++..++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999998789999999999999976 999999999999999999988654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-55 Score=396.22 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=194.0
Q ss_pred cceEEEEeEEEEeCCCCCc----eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------
Q psy106 6 KCAIRVENAYKRHSSKLPY----VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------- 73 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~----iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------- 73 (321)
++|++++|+++.|++ .. +|++|||+|.+||++||+||||||||||.|+|+|+.+|++|+|.++|..
T Consensus 1 ~~~l~v~nl~~~y~~--~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 1 MTLLSVRNLSIVYGG--GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred CceEEEeceEEEecC--CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch
Confidence 368999999999988 45 9999999999999999999999999999999999999999999999953
Q ss_pred --cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHH
Q psy106 74 --KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 74 --~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL 147 (321)
.+.|.+|||+| ++.|..||.+.+.-+...++.++.+ +++.++++.+++.. ++++|.+|||||+||+||||||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence 25699999998 5889999999998777766665443 44888999999974 6999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.+|++||||||||+||+..+.++++++.++++ .+.|.|++|||+..+++ |||+++|++|++++.++.+++.+.
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999984 59999999999999998 999999999999999999998765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=384.74 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=195.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~ 75 (321)
||+++|++|.|+++ +.+|+|+||+|++||++-++||||||||||+|+|++..+|++|+|+++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 68999999999987 6799999999999999999999999999999999999999999999998763 6
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||||..+.+++||+||++|.....+.+..++++++.++++.++|.+ .+..|.+|||||||||+||||++++|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 89999999999999999999999999999999999999999999999976 67889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
|.||||.+|||....++++++.+++..|+||+|+|||.+.+.+ -.|++.+++|+++.+..
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999988 67999999999987654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=419.05 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=197.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc--cEEEECCccc-------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG--GNIHLSITSK-------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~--G~I~~~g~~~-------~~ig 78 (321)
.|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+. ++||
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4899999999987 669999999999999999999999999999999999999999 9999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+.+||+||+.|....++.+..+.+++++++++.++++. .++++.+|||||||||+|||||+.+|++||||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999877666666666778889999999976 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC--CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES--GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~--g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+|||+..+.++++.|+++.++ |+|+|++|||++++.. |||+++|++|+++..|++++++...
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999865 8999999999999976 9999999999999999999998764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=397.94 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCe
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ 76 (321)
+|++++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.+ +++
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 579999999999875 579999999999999999999999999999999999999999999998864 267
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+|||||+|. .+..-||.|.++|+....+.+.+++++++.++++.+++.. .++++.+|||||||||+||.+|+++|++|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 999999983 3344599999999999889988889999999999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||||||.+++++++++++++++ |+|+|++|||++++.. |||+++|++|+++.+|+|+++.++
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999866 7999999999999976 999999999999999999888764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=419.73 Aligned_cols=217 Identities=28% Similarity=0.417 Sum_probs=199.2
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeE
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQL 77 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~i 77 (321)
+.++|+++|++++|++ ..+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|.+. +++
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 3568999999999987 6699999999999999999999999999999999999999999999998753 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+||.+||.||+.|.....+.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998776555555566677888999999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||++||+..+..+.+.|+++.+ .|.|+|++|||++++.. |||+++|++|+++..|++++++.+..
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999999975 49999999999999976 99999999999999999999987643
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=389.59 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=196.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-----cEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-----GNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-----G~I~~~g~~~------ 74 (321)
.+.++++||++.||+ +.+|+|||++|++++++||+|||||||||+||++..+..... |+|.++|++.
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 467999999999998 679999999999999999999999999999999998876654 9999998763
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++||+|||.|+.|| +|++||+.|+.++++...++.++.++..++...|. .+++.+..||||||||++||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 68999999999999 89999999999999887777777888777776652 25778889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||+.+|++||||||||+|||.+..++-++|.+|+ +.-||+++||+|..+.+ +|+.+++..|++++.|+.++++.++.
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 99999999999999999999999999999999998 46999999999999988 99999999999999999999987755
Q ss_pred cc
Q psy106 224 MK 225 (321)
Q Consensus 224 ~~ 225 (321)
.+
T Consensus 241 ~~ 242 (253)
T COG1117 241 HK 242 (253)
T ss_pred HH
Confidence 43
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=393.58 Aligned_cols=210 Identities=29% Similarity=0.402 Sum_probs=188.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999987 5699999999999999999999999999999999999999999999988531 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++.+++.+|+.||+.+....+ +....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998765433 2344445566778889999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999986 48999999999999976 99999999999999999888753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-54 Score=407.80 Aligned_cols=211 Identities=32% Similarity=0.538 Sum_probs=194.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
+++++|++|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 5899999999987 6799999999999999999999999999999999999999999999998653 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++++|+.||+.+....++.+.++..++++++++.+++.. .++++++||||||||++|||||+++|+++||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999999998877776655555667888999999975 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+||||.+++.++++++++++ ++|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999865 7999999999999987 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-54 Score=415.72 Aligned_cols=213 Identities=30% Similarity=0.449 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. +++||+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999998753 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||++.+|+.+|+.||+.+..... +.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999876542 2344555677888999999975 689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||||+|||+..+..+++.|++++++ |+|+|++|||++++.. |||+++|++|++++.|++++++...
T Consensus 160 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999865 8999999999999977 9999999999999999999997654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-54 Score=392.15 Aligned_cols=212 Identities=29% Similarity=0.439 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999998642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||++.+++.+|+.||+.+.....+. ...+..+.+..+++.+++.. .++++.+||+|||||++|||||+.+|++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999876543322 23334456778889999865 688899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999986 48999999999999876 999999999999999999887643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-54 Score=416.58 Aligned_cols=213 Identities=26% Similarity=0.465 Sum_probs=195.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 6999999999987 6699999999999999999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||.||+.+.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999998766555555555677888999999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|+|||+.+++.+++.|+++.+ .|.|+|++|||++++.. ||++++|++|+++..|+++++....
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999875 49999999999999976 9999999999999999999987654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=387.39 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=181.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~ 75 (321)
||+++|++++|+++.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999965323599999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999999999999988765544444444566788899999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||||+|||+.+++.+.++|++++++|.|||++|||++++.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998779999999999999976 999999999974
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=387.44 Aligned_cols=208 Identities=31% Similarity=0.517 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999988765555544445567788899999875 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||+.+++.++++|++++++ |+|||++||+++++.. |||+++|++|+++..++++++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999865 8999999999999976 999999999999999887754
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=387.45 Aligned_cols=222 Identities=29% Similarity=0.476 Sum_probs=200.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
+.++.++|+.|+|++ +++++++||+|++||++|++|||||||||.+.|++|+++|++|.|.+++.+. .
T Consensus 2 ~~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 2 MSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred CcEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357999999999999 7799999999999999999999999999999999999999999999998764 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ--QIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
.|||+||+++.|..+||.||+.........+.+ +.+.+.+.+++.+.+.+ .+++..+||||||+|+.|||||+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 599999999999999999999887776553333 44455789999999987 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+++||||++|+||.+..++.++++.|+++|..|+++-|+..|.-. |||.++|++|++.++|+|+++.++ +.+...|
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n---~~Vr~~Y 236 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN---EDVRRVY 236 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC---hhhhhhc
Confidence 999999999999999999999999999999999999999999855 999999999999999999999765 4455555
Q ss_pred H
Q psy106 232 L 232 (321)
Q Consensus 232 ~ 232 (321)
.
T Consensus 237 L 237 (243)
T COG1137 237 L 237 (243)
T ss_pred c
Confidence 4
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=411.09 Aligned_cols=214 Identities=27% Similarity=0.424 Sum_probs=193.8
Q ss_pred eEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++ ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 6899999999972 125699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++|||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 469999999999999999999998766656555555667888999999975 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||||||+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999975 49999999999999976 999999999999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=415.13 Aligned_cols=216 Identities=30% Similarity=0.486 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig 78 (321)
.++|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|++. +++|
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 467999999999987 6699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+|+.+||.||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD 174 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999998876655566666778889999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||++||+..+..+.+.|+++.+ .|.|+|++|||++++.. |||+++|++|+++..|+++++..+..
T Consensus 175 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999998864 59999999999999976 99999999999999999999987543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=387.96 Aligned_cols=222 Identities=31% Similarity=0.465 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 5899999999987 6699999999999999999999999999999999999999999999988642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+....++....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998889999999987655544444444556778888889865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
||+|||+.+++.+++.|+++++ +|.|||++||+++++..||++++|++|++++.++++++........+.+.|
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEAAF 232 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHH
Confidence 9999999999999999999874 689999999999999779999999999999999998886653323444444
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-54 Score=405.98 Aligned_cols=204 Identities=33% Similarity=0.579 Sum_probs=187.2
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEEcCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFMPQQISLY 87 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~ 87 (321)
|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+||++.++
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 46877 6799999999999999999999999999999999999999999999998653 4699999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~ 166 (321)
+.+|+.||+.+....++.+..+.+++++++++.+++.. .++++++|||||||||+||+||+++|++|||||||+||||.
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 158 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 99999999998777666655555667888999999975 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 167 IAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 167 ~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++.++++|++++++|+|||++||++++++. ||++++|++|++++.|+++++...
T Consensus 159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999998779999999999999987 999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=384.30 Aligned_cols=203 Identities=34% Similarity=0.517 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 578999999987 6699999999999999999999999999999999999999999999988653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++++|+.||+.+....++......++++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987654444444444566778889999865 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999875 59999999999999876 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=387.50 Aligned_cols=213 Identities=29% Similarity=0.451 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999862 01699999999999999999999999999999999999999999999988642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+.++|+||++.+++.+|+.||+.+....++.......+.+.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999987655444444444566778899999865 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999764 8999999999999976 99999999999999999887643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=385.38 Aligned_cols=210 Identities=33% Similarity=0.530 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999987 5699999999999999999999999999999999999999999999988642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+|+.||+.+....++....+..++++++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999987654444433444556778888888865 68889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999998779999999999999876 99999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-53 Score=385.18 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+||+++|+++.|+++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 5899999999997522 3599999999999999999999999999999999999999999999998542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 359999999999999999999987654444444445567788899999965 6788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecCh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~ 215 (321)
|++|||||||+|||+.++..++++|+++++ +|+|||++|||++++..+|++++|++|++++.++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999975 59999999999999988789999999999988763
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=386.81 Aligned_cols=210 Identities=30% Similarity=0.435 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGM----------SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~----------~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
|+||++.+++.+|+.||+.+....... ...+..+.+.++++.++++. .++++.+|||||||||+|||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999876543321 12334456778888999865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|+++||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=382.04 Aligned_cols=206 Identities=28% Similarity=0.499 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
||+++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 589999999998721 1699999999999999999999999999999999999999999999988652 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987665555544555667788899999965 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||+|||+.+++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999998779999999999999976 9999999999997653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=415.94 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 57999999999998 6799999999999999999999999999999999999999999999998652 569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
||+||++.+++.+|+.||+.+....+ .....+.+++++++++.+++.. .++++.+||||||||++|||||+++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999989999999998754322 1112334567888999999975 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~ 231 (321)
+|||||||+|||+.++.+++++|++++++|+|||++|||++++.+ |||+++|++|++++.|+++++.+. +.+.+.|
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~---~~l~~~~ 236 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA---DTLRAAF 236 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc---HHHHHHh
Confidence 999999999999999999999999998779999999999999976 999999999999999999988653 3455555
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=381.02 Aligned_cols=208 Identities=30% Similarity=0.443 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
|+++|++++|++.. +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999997521 3599999999999999999999999999999999999999999999998653 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+++.+|+.||+.+....++...+...+.+..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 9999998999999987655545444444566778889999865 688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEe--CCEEEEecChh
Q psy106 162 GIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMR--KGILLEESPPK 216 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~--~G~i~~~g~~~ 216 (321)
|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|+ +|++++.++++
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999864 58999999999999876 99999999 79999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=378.33 Aligned_cols=203 Identities=30% Similarity=0.486 Sum_probs=183.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 578999999987 5699999999999999999999999999999999999999999999988652 3699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999989999999987655444444455566778889999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999975 58999999999999976 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=383.47 Aligned_cols=212 Identities=32% Similarity=0.505 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 5899999999987 5699999999999999999999999999999999999999999999998542 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||+|||||++|||||+.+|+++
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999987532 233334444566778889999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999998779999999999999976 999999999999999999887543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=387.37 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=200.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++++++++++|+||+ ..+++||||++++||++||+|||||||||++|+|+|+++|++|+|.++|++. .
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 467999999999999 7899999999999999999999999999999999999999999999999864 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY------------GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~------------~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~ 142 (321)
.|+.-||.+.+|++|||.||+......+ ....++..+++..+++.+++.+ .++++++||+|||+|+.
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence 5888999999999999999998764311 1134566778899999999976 79999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+.+|++|+||||.+||.|....++.++|+++++ .|.||+++.||++.+.. ||||++|+.|+++++|+|+++.+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999999986 57999999999999977 99999999999999999999976
Q ss_pred hcccccHHHHHH
Q psy106 221 KYNMKSLEDVFL 232 (321)
Q Consensus 221 ~~~~~~l~~~~~ 232 (321)
+ +.+.++|.
T Consensus 240 d---p~VieAYL 248 (250)
T COG0411 240 N---PRVIEAYL 248 (250)
T ss_pred C---HHhHHHhc
Confidence 5 45556654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-53 Score=379.95 Aligned_cols=209 Identities=36% Similarity=0.605 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++||+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999975324599999999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+++|||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999999999999988766555444444566778889899865 6788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999875 5999999999999976 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=384.05 Aligned_cols=212 Identities=33% Similarity=0.492 Sum_probs=189.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------- 73 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7999999999987 569999999999999999999999999999999999999999999998742
Q ss_pred ---cCeEEEEcCCCCCCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 74 ---KKQLGFMPQQISLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 74 ---~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.++++|+||++.+++.+|+.||+.+.... .+....+..+++.++++.+++.. .++++.+||||||||++|||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 13699999999999999999999875332 23334444566778888889865 58889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998779999999999999976 999999999999999999887643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=393.84 Aligned_cols=213 Identities=28% Similarity=0.428 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 489999999997521 3599999999999999999999999999999999999999999999988542
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--c-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 -KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--H-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 -~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++. .+...|+.||+.+.....+...++..+++.++++.+++. . .++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999973 233579999999876555666666667788899999995 3 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+|||+.++.+++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999754 9999999999999966 99999999999999999998764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-53 Score=408.01 Aligned_cols=205 Identities=30% Similarity=0.439 Sum_probs=188.4
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------CeEEEEcC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQLGFMPQ 82 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ig~v~Q 82 (321)
|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+||
T Consensus 1 ~~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 1 KKTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 46777 6699999999999999999999999999999999999999999999998642 46999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+|+++||.||+.+.....+.+..+..+++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999998877666666666778889999999975 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 162 GIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||.++..+.+.+.++++ .|+|||++|||++++.. |||+++|++|+++..|+++++..+.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 9999999999999999975 49999999999999976 9999999999999999999987654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-53 Score=379.69 Aligned_cols=201 Identities=29% Similarity=0.449 Sum_probs=178.8
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
|+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997521 3599999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++++|+||++.+++.+|+.||+.+.....+....+.++.+.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 369999999999999999999988655544443344556778889999875 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+|||||||+|||+.++..++++|+++++ +|+|||++||++++++.||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999976 59999999999999877999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=379.81 Aligned_cols=207 Identities=30% Similarity=0.476 Sum_probs=182.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-CCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL-HLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+++.+|+.||+.+....++ ..+..+.+..+++.+ ++.. .++++.+||||||||++|||||+.+|+++||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999987654433 122334455566666 4544 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||+|||+.++..++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999998778999999999999876 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=391.57 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=187.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|+++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 479999999999632 4699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .++.+|+.||+.+.....+....+.++++..+++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999973 3456799999987655444555555567788899999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|||||+|||+.++.+++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998779999999999999965 999999999999999998754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=375.95 Aligned_cols=203 Identities=30% Similarity=0.555 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQQ 83 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~ 83 (321)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+||+
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 578999999987 5699999999999999999999999999999999999999999999998653 579999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+....++....+..+.+.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999999999987665555444445567788889999865 6788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999988778999999999999976 9999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=409.94 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeCCCCC----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSKLP----------------------YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~----------------------~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
.+|+++|++|.||.... .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46999999999987320 17999999999999999999999999999999999999999
Q ss_pred cEEEECCccc-------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCC
Q psy106 65 GNIHLSITSK-------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130 (321)
Q Consensus 65 G~I~~~g~~~-------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~ 130 (321)
|+|.++|.+. +++||+||++.+|+++|+.||+.+.....+.+..+..+++.++++.+++.. .++++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999998642 369999999999999999999998766555555555567788999999975 68999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|.++++ .|+|||++|||++++.. ||++++|++|+
T Consensus 163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999974 59999999999999976 99999999999
Q ss_pred EEEecChhHHHhhc
Q psy106 209 LLEESPPKVLLEKY 222 (321)
Q Consensus 209 i~~~g~~~~l~~~~ 222 (321)
++..|+++++....
T Consensus 243 i~~~g~~~~l~~~~ 256 (400)
T PRK10070 243 VVQVGTPDEILNNP 256 (400)
T ss_pred EEecCCHHHHHhCc
Confidence 99999999987643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=390.18 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=190.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 468999999999987 6699999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++++|+||++.+++.+|+.||+.+..... ..+....++++..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999999999999999998754332 2333334456677888999875 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.+++.++++|++++++ |+|||++|||++++.. ||++++|++|++++.|+++++.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999754 8999999999999976 999999999999999999888653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=378.58 Aligned_cols=209 Identities=28% Similarity=0.386 Sum_probs=184.2
Q ss_pred CCcceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------
Q psy106 4 KDKCAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------- 74 (321)
+.++||+++|++++|+++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 2 PAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred CcCceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 3457899999999997532 2499999999999999999999999999999999999999999999988542
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++++|+||++.+++.+|+.||+.+....++...++.++++.++++.+++.. .++++.+||||||||++|||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 369999999999999999999987654444444445567788899999865 6888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
+.+|+++||||||+|||+.++..++++|+++++ .|.|||++|||+++++.||++++|++|++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999975 48999999999999877999999999998753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=376.74 Aligned_cols=199 Identities=27% Similarity=0.428 Sum_probs=179.1
Q ss_pred eEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 589999999994 4 5699999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++++|+||++.+++.+|+.||+.+.....+......++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 469999999999999999999988655444444444567788899999865 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
+||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999988779999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=391.67 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999742 24599999999999999999999999999999999999999999999998653 46
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++ .+++.+|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998 36777899999988655555555556677888999999975 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|+++++ .|+|||++||+++++..|||+++|++|+++..|+++++...
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999986 49999999999999966999999999999999999887643
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=392.61 Aligned_cols=212 Identities=26% Similarity=0.415 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
||+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 689999999997421 2599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .+++ .|+.||+.|....++.+..+.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 3699999987 5665 59999999876655666666667788899999985 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999998779999999999999966 99999999999999999998864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=384.44 Aligned_cols=209 Identities=29% Similarity=0.426 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++|+ + +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 589999999998 5 5699999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+++||+||++.+++.+|+.||+.+.... .+....+..+++.++++.+++.. .++++.+||||||||++|||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 4599999999999999999999764211 11112233456777888888865 68899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999875 48999999999999966 999999999999999998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-52 Score=398.74 Aligned_cols=218 Identities=25% Similarity=0.349 Sum_probs=194.8
Q ss_pred CcceEEEEeEEEEeCCC-----------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 5 DKCAIRVENAYKRHSSK-----------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~-----------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.+++|+++||+++|+.. ...+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 46789999999999631 2469999999999999999999999999999999999999999999999865
Q ss_pred c------------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccCh
Q psy106 74 K------------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSG 135 (321)
Q Consensus 74 ~------------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSg 135 (321)
. ++++|+||++ .+++.+|+.||+.+....+ +.+..+.++++.++++.+++. . .++++++|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 2 4699999998 5888999999998765544 345556667788899999984 3 6899999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999975 49999999999999977 9999999999999999
Q ss_pred ChhHHHhhc
Q psy106 214 PPKVLLEKY 222 (321)
Q Consensus 214 ~~~~l~~~~ 222 (321)
+++++.++.
T Consensus 245 ~~~~i~~~~ 253 (331)
T PRK15079 245 TYDEVYHNP 253 (331)
T ss_pred CHHHHHcCC
Confidence 999987653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-52 Score=383.19 Aligned_cols=214 Identities=30% Similarity=0.452 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
..+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999987 5699999999999999999999999999999999999999999999988532
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQR 140 (321)
++++|+||++.+++.+|+.||+.+.. ...+....+.++++.++++.+++.. . ++++.+||||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 46999999999999999999998643 2333444445567788899999965 3 78899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||+.+|+++||||||+|||+.+++.+.++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999999999999999999998779999999999999986 9999999999999999998875
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
..
T Consensus 241 ~~ 242 (257)
T PRK10619 241 GN 242 (257)
T ss_pred hC
Confidence 43
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=395.52 Aligned_cols=213 Identities=29% Similarity=0.482 Sum_probs=189.7
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------- 73 (321)
+|+++|++++|+++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 499999999997531 259999999999999999999999999999999999999999999997532
Q ss_pred ----------------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-cc
Q psy106 74 ----------------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FK 127 (321)
Q Consensus 74 ----------------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~ 127 (321)
.++|||+||++ .++ ..||.||+.|.....+.+.++..+++.++++.++++ . .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 14699999986 344 569999999876656666666677888899999995 4 68
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 128 RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999998779999999999999866 999999999
Q ss_pred CEEEEecChhHHHhh
Q psy106 207 GILLEESPPKVLLEK 221 (321)
Q Consensus 207 G~i~~~g~~~~l~~~ 221 (321)
|++++.|+++++...
T Consensus 241 G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 241 GKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999999987653
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=392.24 Aligned_cols=212 Identities=29% Similarity=0.480 Sum_probs=188.8
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 3599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .++ ..|+.||+.+.....+....+..++++++++.+++. . .++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999997 455 479999998876555555555666788899999996 4 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999975 49999999999999976 99999999999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=376.29 Aligned_cols=203 Identities=32% Similarity=0.461 Sum_probs=179.5
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
+|+++|++++|+++. +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 478999999997421 3599999999999999999999999999999999999999999999988542
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++++|+||++.+++.+|+.||+.+..........+..+++.++++.++++. .++++.+||||||||++|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 359999999999999999999987654433333344456778889999865 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEE
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILL 210 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~ 210 (321)
++|||||||+|||+.++..++++|+++++ .|+|||++|||+++++.||++++|++|+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999975 589999999999999779999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=380.06 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 47999999999987 5699999999999999999999999999999999999999999999998642 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY--------GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+||++.+++.+|+.||+.+..... +...++.+++++++++.++++. .++++++|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999998754311 1112334456788889999875 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999875 7899999999999976 99999999999999999888753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=378.98 Aligned_cols=205 Identities=29% Similarity=0.458 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCccEEEECCccc---------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----VLNGGNIHLSITSK--------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~--------- 74 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999987 56999999999999999999999999999999999999 99999999988642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcCCcc-ccCC--CCccChHHHHHHHHHHHHh
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL-QQIKEKAEYLQALLHLNH-FKRK--CGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~ll~~~~l~~-~~~~--~~~LSgGqkQRv~iA~aL~ 148 (321)
+++||+||++.++ .+|+.||+.+.....+... .+.++++.++++.+++.. .+++ +.+||||||||++|||||+
T Consensus 79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 4699999999888 7999999987655443322 224566778889999865 4555 5999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
.+|++|||||||+|||+.++..++++|++++++ +|||++|||++++.. ||++++|++|++++.|++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999876 999999999999876 99999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=381.66 Aligned_cols=212 Identities=28% Similarity=0.473 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
.||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 2 ATLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred ceEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 47999999999987 5699999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+..... ....++.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998754332 2233344556778888888865 58889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+++++++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999988779999999999999876 99999999999999999988754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=389.86 Aligned_cols=214 Identities=28% Similarity=0.420 Sum_probs=191.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999975334699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. ++...|+.||+.+.....+...++..+++..+++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999983 6677899999988665555555555667888999999875 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..++++|++++++ |.|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999865 899999999999997799999999999999999988754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=380.63 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~-------- 74 (321)
||+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 5899999999987 56999999999999999999999999999999999999998 99999988642
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++ +|+.||+.+.....+ .+..+..+.+..+++.+++. . .++++.+||||||||++|||
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 46999999999888 999999987654443 23344456677888999985 4 57889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999876 4899999999999976 999999999999999999887643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=381.08 Aligned_cols=215 Identities=26% Similarity=0.421 Sum_probs=187.8
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc---
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK--- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~--- 74 (321)
|.+.|+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|++.
T Consensus 1 ~~~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 1 MASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CCCCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 457789999999999987 569999999999999999999999999999999999964 6899999988542
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHH
Q psy106 75 --------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 --------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQR 140 (321)
++++|+||++.+++ .|+.||+.+.....+. ..+...+++..+++.+++.. .++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 46999999998887 5999999876544433 22334456777888888732 478899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++|||++++.. ||++++|++|++++.|+++++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999854 7999999999999976 9999999999999999998876
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
+.
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 54
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=376.08 Aligned_cols=202 Identities=28% Similarity=0.348 Sum_probs=181.4
Q ss_pred eEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 8 AIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
||+++|++++| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 58999999999 55 5699999999999999999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+.++|+||++.+++++|+.||+.+.....+....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999998889999999988655544444444556777888898865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|||||||+|||+.+++.++++|++++++|.|+|++||+++++.. ||++++|++|+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999998778999999999999977 99999999999864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=389.97 Aligned_cols=212 Identities=26% Similarity=0.397 Sum_probs=188.3
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 589999999997421 3599999999999999999999999999999999999999999999998642
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+.+||+||++ .++ .+|+.||+.+....++...++..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999997 355 579999998765544445555566778889999996 4 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999988754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=379.96 Aligned_cols=211 Identities=33% Similarity=0.531 Sum_probs=188.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999862 3599999999999999999999999999999999999999999999988642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc---cccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~---~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+||++.+++.+|+.||+.+.....+....+..+.+.++++.+++. ..++++.+||||||||++|||||+.+|+++||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998765554444444456677888999986 35888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999975 48999999999999876 99999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=373.45 Aligned_cols=199 Identities=33% Similarity=0.570 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 578999999987 6799999999999999999999999999999999999999999999998653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.++...++.. .++++++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 9999999999999998765544321 345677888888865 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999988779999999999999976 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=388.35 Aligned_cols=212 Identities=27% Similarity=0.367 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~i 77 (321)
||+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 58999999999532 4599999999999999999999999999999999999999999999988642 459
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .+...|+.||+.+....++....+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999985 3566899999987655555555555667788889999875 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..+++.+++++++|.|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999877999999999999996699999999999999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-53 Score=392.59 Aligned_cols=222 Identities=27% Similarity=0.416 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEeCCCCC----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSKLP----------------------YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~----------------------~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
..|+++|++|-||++.. ..++|+||+|+.|||+.|+|-||||||||+|++.+|++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999986321 25799999999999999999999999999999999999999
Q ss_pred cEEEECCccc-------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCC
Q psy106 65 GNIHLSITSK-------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130 (321)
Q Consensus 65 G~I~~~g~~~-------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~ 130 (321)
|+|.++|.+. +++++|||++.++|+.||.||..|+....+.++.+.++++.+.++.++|.. .+++|
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999763 679999999999999999999999999999999999999999999999976 68999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
++|||||||||.|||||+.+|++|++|||+|+|||.-+.++.+-|.++.+ -++||+++|||++|+-+ .|||++|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999999874 58999999999999977 99999999999
Q ss_pred EEEecChhHHHhhcccccHH
Q psy106 209 LLEESPPKVLLEKYNMKSLE 228 (321)
Q Consensus 209 i~~~g~~~~l~~~~~~~~l~ 228 (321)
|+..|+|+++..++..+-+.
T Consensus 243 ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 243 IVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred EEEeCCHHHHHcCccHHHHH
Confidence 99999999998876543333
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=379.46 Aligned_cols=210 Identities=28% Similarity=0.463 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999752 3599999999999999999999999999999999999999999999988542 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+||++.+++.+|+.||+.+.... .+.......+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999764321 11112233456677888899865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|+++||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999999999999975 59999999999999986 9999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=378.64 Aligned_cols=210 Identities=29% Similarity=0.432 Sum_probs=187.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 6899999999987 5699999999999999999999999999999999999999999999988631
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++++|+||++.+++.+|+.||+.+. ....+....+..+.+.++++.++++. .++++.+||||||||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3699999999999999999999753 23334444444566778888889865 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+++||||||+|||+.++..++++|++++++|+|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999998779999999999999976 9999999999999999887753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-52 Score=378.26 Aligned_cols=210 Identities=24% Similarity=0.474 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 48999999999987 6799999999999999999999999999999999999999999999998642 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-CCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL-HLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++.+|+.||+.+..... ...+..+.+..+++.+ ++.. .++++.+||||||||++|||||+.+|+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999998753221 1222334455556665 3543 57789999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.+++.+++.|++++++|.|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999998779999999999999866 99999999999999999988853
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=382.90 Aligned_cols=207 Identities=30% Similarity=0.436 Sum_probs=185.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQ 83 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~ 83 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++||+||+
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 5899999999987 5699999999999999999999999999999999999999999999998653 468999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 999999999999987654444444444566788899999865 5888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe--CCEEEEecChh
Q psy106 163 IDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR--KGILLEESPPK 216 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~--~G~i~~~g~~~ 216 (321)
||+.++..++++|++++ ++|+|||++|||++++.. ||++++|+ +|+++..++.+
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999985 458999999999999976 99999998 59999887653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=372.48 Aligned_cols=201 Identities=33% Similarity=0.628 Sum_probs=180.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++ ..+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEe
Confidence 578999999987 56999999999999 9999999999999999999999999999999998642 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999988665555444444566778889999865 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
|+|||+.+++.+.++|+++++ +.|||++|||++++.. |||+++|++|++++.|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999876 5999999999999976 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=386.18 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=187.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 6899999999987 5699999999999999999999999999999999999999999999988642 36
Q ss_pred EEEEcCCCCC-CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++.+ +...|+.+|+.+.....+....+..+++..+++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999753 345689999987655444444444566778888888865 67889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998779999999999999976 99999999999999999988754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=380.91 Aligned_cols=213 Identities=25% Similarity=0.375 Sum_probs=187.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++||+++|+++.|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 568999999999987 6799999999999999999999999999999999999999999999998642 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH----------hCC-----CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI----------YGM-----SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~----------~~~-----~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQ 139 (321)
.++|+||++.+++.+|+.||+.+.... +.. ...+..+.+.++++.+++.. .++++.+|||||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 489999999999999999999875321 110 11122345677788888865 68999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|++|||||+.+|++|||||||+|||+.++..++++|.+++++ |+|||++||+++++.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 999999999999999999999999999999999999999865 8999999999999976 99999999999999999888
Q ss_pred HHh
Q psy106 218 LLE 220 (321)
Q Consensus 218 l~~ 220 (321)
+.+
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=381.29 Aligned_cols=212 Identities=29% Similarity=0.477 Sum_probs=187.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 468999999999987 5699999999999999999999999999999999999975 899999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA 144 (321)
+.+||+||++.+++ +|+.||+.+....++.+.....+++.++++.+++. . .++++.+|||||||||+||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 45999999998888 89999998765544444444445677788888762 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ |+|||++|||++++.. |||+++|++|++++.|+++++...
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999864 7999999999999976 999999999999999999988654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=386.41 Aligned_cols=210 Identities=30% Similarity=0.467 Sum_probs=187.3
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------Ce
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQ 76 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ 76 (321)
.++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888887 6699999999999999999999999999999999999999999999988542 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+||+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999988655444444444566778889999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999975 48999999999999876 999999999999999999888654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=383.79 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=192.6
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|.+. .+||+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~~~~-~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 1 MEDK-NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CCCC-CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 5555 578999999999976323599999999999999999999999999999999999999999999998652
Q ss_pred ---CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 ---KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 ---~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
++++|+||++. +++..|+.+|+.+.....+...++..+.+..+++.+++.. .++++.+||+|||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999985 6777899999987654444444445566778889999865 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|+++||||||+|||+.++..+++.|+++++ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999875 4899999999999986799999999999999999988754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=382.18 Aligned_cols=211 Identities=28% Similarity=0.434 Sum_probs=187.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 6899999999987 5699999999999999999999999999999999999999999999988642 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh------cCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL------HDP 151 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~------~~P 151 (321)
|+||++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+ .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999998888999999987543322222333456778888889865 68899999999999999999999 599
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..+.++|++++ ++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999999999999999999999997 679999999999999976 99999999999999999887754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=386.44 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
+||+++|++++|+++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 4 ~~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 489999999999632 5699999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++||+||++. .+...|+.||+.+.....+.+..+..++++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 6999999973 2345799999987655445555555567888899999975 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..++++|++++++ |+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864 9999999999999975 99999999999999999998764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=384.74 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++++++|++++|++. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 579999999999642 4599999999999999999999999999999999999999999999998643 369
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
||+||++. .+...|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999974 3346799999987654444555555567788999999865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+|||+.++..+++++++++++ |.|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999864 8999999999999965 99999999999999999998864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=387.46 Aligned_cols=212 Identities=24% Similarity=0.429 Sum_probs=188.0
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|+++. +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 3599999999999999999999999999999999999999999999988542
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++ .+++ .|+.||+.+.....+....+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3699999987 4555 59999998865554555556667788899999996 4 5788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|+++||||||+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 59999999999999865 99999999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=392.77 Aligned_cols=217 Identities=24% Similarity=0.370 Sum_probs=193.6
Q ss_pred cceEEEEeEEEEeCCC--------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---
Q psy106 6 KCAIRVENAYKRHSSK--------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--- 74 (321)
+++|+++||++.|+.. ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 4689999999999631 24699999999999999999999999999999999999999999999998642
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 ---------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 ---------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
++|||+||++ .+++.+|+.+++......+ +....+.++++.++++.+++.. .++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 4699999998 5888999999987655443 3445555677888999999953 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++||+||||++||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999985 59999999999999986 999999999999999999998
Q ss_pred Hhhc
Q psy106 219 LEKY 222 (321)
Q Consensus 219 ~~~~ 222 (321)
.+..
T Consensus 243 ~~~p 246 (327)
T PRK11308 243 FNNP 246 (327)
T ss_pred hcCC
Confidence 7654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=392.15 Aligned_cols=215 Identities=29% Similarity=0.457 Sum_probs=189.9
Q ss_pred CcceEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------
Q psy106 5 DKCAIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------- 73 (321)
+.++|+++|++++|++.. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 457899999999997521 359999999999999999999999999999999999999999999998632
Q ss_pred -----------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCc
Q psy106 74 -----------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGS 132 (321)
Q Consensus 74 -----------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~ 132 (321)
.+++||+||++ .+++ .|+.||+.+.....+.+.++..+++.++++.++++ . .++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 14699999997 4665 59999998765444455555566778889999995 3 6889999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
||||||||++|||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998779999999999999865 99999999999999
Q ss_pred ecChhHHHh
Q psy106 212 ESPPKVLLE 220 (321)
Q Consensus 212 ~g~~~~l~~ 220 (321)
.|+++++..
T Consensus 257 ~g~~~~~~~ 265 (320)
T PRK13631 257 TGTPYEIFT 265 (320)
T ss_pred eCCHHHHhc
Confidence 999998864
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=383.66 Aligned_cols=217 Identities=25% Similarity=0.379 Sum_probs=190.9
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
+..+||+++|++++|+++.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 3 ~~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred CcceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence 44679999999999963225699999999999999999999999999999999999999999999988642
Q ss_pred CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++||+||++. .++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999974 5677899999987654434444445566788889999865 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.+++.++++|++++++ ++|||++||+++++..||++++|++|+++..|+++++..
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999765 599999999999987799999999999999999887754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=380.21 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=187.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998642 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
|+||++.+++.+|+.||+.+... .++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998888999999987421 122112233456778888889865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999988779999999999999976 99999999999999999887753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=369.76 Aligned_cols=200 Identities=28% Similarity=0.447 Sum_probs=179.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~~ 76 (321)
|+++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999642 4699999999999999999999999999999999999999999999988642 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
++|+||++.+++.+|+.||+.+....++...++..+++.++++.++++. .++++.+||||||||++|||||+.+|+++|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999988755544444445566778889989865 588899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999997779999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=370.01 Aligned_cols=199 Identities=32% Similarity=0.489 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQL 77 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~i 77 (321)
|+++|++++|++ +.+++++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|+++|
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999987543 233334444566778888888865 688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999998778999999999999976 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=381.88 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=184.7
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEE
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLG 78 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig 78 (321)
+++.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 7 ~~~~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 7 LNQGTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred ccCCCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 456788999999999987 5699999999999999999999999999999999999999999999988642 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+|+.||+.+... . ..++++.++++.+++.. .++++.+||||||||++|||||+.+|+++|||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999998999999986421 1 12345677888899865 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||+.++..+.++|++++ +.|+|||++|||++++.. ||++++|++|++++.++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999986 458999999999999876 9999999999999988765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=370.27 Aligned_cols=199 Identities=28% Similarity=0.415 Sum_probs=174.6
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v 80 (321)
+++|++++|++..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999976223599999999999999999999999999999999999999999999988642 469999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 81 PQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 81 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
||++. .++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99985 3667899999987654444334444556778888899864 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999998779999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=391.18 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=190.7
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCccEEEECCccc-------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV----LNGGNIHLSITSK------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~----p~~G~I~~~g~~~------- 74 (321)
+|+++|+++.|++.. ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 699999999997632 359999999999999999999999999999999999997 4899999998752
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHHH
Q psy106 75 ------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 ------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQRv 141 (321)
+.|+|+||++ .+++.+|+.+++......+ +...++.++++.++++.+++.. .++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 2599999998 5888999998887655443 3445556677888999999952 4789999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. |||+++|++|++++.|+++++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999985 59999999999999976 9999999999999999999987
Q ss_pred hhcc
Q psy106 220 EKYN 223 (321)
Q Consensus 220 ~~~~ 223 (321)
++..
T Consensus 243 ~~p~ 246 (326)
T PRK11022 243 RAPR 246 (326)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=375.81 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 46999999999987 5699999999999999999999999999999999999974 799999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
+++||+||++.+++.+|+.||+.+.....+. ...+..+.+.++++.+++. ..++++.+||||||||++|||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 4699999999888899999999876543322 2334455677888888874 257889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..+++.|+++++ |+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 99999999999999999999999999999999864 8999999999999866 999999999999999999887643
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=381.87 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=189.9
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
-++.++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~~~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 6 NHSDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CCCCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 456789999999999987 5699999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHH-hC---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLI-YG---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+.++|+||++.+++.+|+.||+.+.... .. .......+++..+++.+++.. .++++.+||||||||++|||||+
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 4699999998888889999999864321 11 111233456778888999865 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
.+|++|||||||+|||+.+++.++++|.+++++ |.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999999754 8999999999999976 99999999999999999887753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=382.48 Aligned_cols=212 Identities=27% Similarity=0.443 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 489999999997521 3599999999999999999999999999999999999999999999988532
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ---~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|+|+||++ .+++ .|+.||+.+....++...++..++++++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3599999997 4555 69999998765544444445556677888889986 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.+++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999988754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=376.11 Aligned_cols=213 Identities=29% Similarity=0.442 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 2 KFAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred cceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 458999999999987 5699999999999999999999999999999999999987 499999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++.+++.+|+.||+.+.....+. +.++..+++..+++.+++. ..++++.+||||||||++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 3699999999999999999999876543332 2333445667788887763 257889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|+++||||||+|||+.++..+.++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6999999999999876 999999999999999999887643
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-51 Score=375.99 Aligned_cols=211 Identities=27% Similarity=0.450 Sum_probs=187.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------- 74 (321)
|+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999987 5699999999999999999999999999999999999999999999987531
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHH
Q psy106 75 --------KQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 --------~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++.+|+.||+.+... ..+....+..+.+.++++.++++. .++.+.+||||||||++||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 469999999999999999999987532 223334444556778888899865 6888999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ .|.|+|++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999876 48999999999999966 999999999999999999887654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=383.95 Aligned_cols=215 Identities=21% Similarity=0.317 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---cEEEECCccc--------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSK-------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---G~I~~~g~~~-------- 74 (321)
.+||+++|++++|++..+.+++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 35799999999997532459999999999999999999999999999999999999987 8999998653
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 -KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 -~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+++||+||++. +++.+|+.||+.+.....+.+.++..+++..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 46999999984 6677899999987655455555555677888899999875 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..++++|+++++ .|+|||++||+++++..|||+++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999975 4999999999999997799999999999999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=370.22 Aligned_cols=206 Identities=31% Similarity=0.403 Sum_probs=177.0
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++++|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 589999999997621 1699999999999999999999999999999999999999999999988542
Q ss_pred -CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCC-HHHHHHH-HHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 -KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMS-LQQIKEK-AEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 -~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~-~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++||+||++ .+++.+|++||+.+....++.. ..+..+. +.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 3699999998 5677899999998765443322 1222222 34677888884 3 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999765 8999999999999986 9999999999997654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=372.56 Aligned_cols=205 Identities=28% Similarity=0.468 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999988542 3699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+++.+|+.||+.+....++... .+....+++.++ +.. .++++.+||||||||++|||||+.+|+++||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999987654433221 233455566655 443 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+|||+.++..++++|.++++ .|+|||++||+++++.. ||+++++++|++++.|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999886 48999999999999986 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=367.97 Aligned_cols=196 Identities=30% Similarity=0.371 Sum_probs=172.5
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQ 83 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~ 83 (321)
+++|++++|++. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +++||+||+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 468999999752 3599999999999999999999999999999999999999999999998753 479999999
Q ss_pred CC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 84 IS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 84 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+. .+..+|+.||+.+.....+. ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 74 23457999999875443321 1245677888999865 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~ 210 (321)
|||+.+++.++++|++++++|.|||++||+++++.. ||++++|++|+++
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999997779999999999999976 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-51 Score=375.27 Aligned_cols=212 Identities=29% Similarity=0.429 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 458999999999987 5699999999999999999999999999999999999987 489999987531
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCC----cc-ccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHL----NH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l----~~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ +|++||+.+.....+. .....++.+..+++.+++ .. .++++.+||||||||++|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 46999999998885 8999999876544332 233345566777787776 22 578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|++++ ++.|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999996 47999999999999976 999999999999999999988654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=382.61 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=190.5
Q ss_pred cceEEEEeEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------
Q psy106 6 KCAIRVENAYKRHSSK----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------- 74 (321)
.+||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 4689999999999742 14699999999999999999999999999999999999999999999987542
Q ss_pred ---CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 ---KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 ---~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++. .+...|+.+|+.+.....+.+..+.++++.++++.+++.. .++++.+||||||||++|||||+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 46999999974 2334699999988765555555555677888999999965 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+++||||||+|||+.++..+++.|+++++ .|.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999975 59999999999999977999999999999999999988643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=371.59 Aligned_cols=210 Identities=24% Similarity=0.348 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++++|++ .. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 5899999999986 32 499999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.........+..++++.++++.++++. .++++.+||||||||++||||++.+|+++|||||
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999976532111111233456778889999865 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.+++.+.++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999875 58999999999999976 999999999999999999887653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=378.97 Aligned_cols=216 Identities=20% Similarity=0.289 Sum_probs=188.6
Q ss_pred cceEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---- 74 (321)
.+||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 3589999999999631 14699999999999999999999999999999999999999999999988542
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++. +++.+|+.+++.+....+ .....+..+.+.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 36999999975 677889999998765443 233334455677889999984 3 5778899999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.+++.+.++|.++++ .|.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999999999999999999999999999975 48999999999999987 999999999999999999888654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-51 Score=396.51 Aligned_cols=199 Identities=28% Similarity=0.489 Sum_probs=181.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc----c-------------cCeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT----S-------------KKQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~----~-------------~~~ig~v~Q~~~ 85 (321)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ + .++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999984 1 036999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++.+|+.||+.+.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999999999998766656555556677888999999975 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 165 PVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|..+.++++.|.++++ .|+|||++|||++++.. |||+++|++|+++..|+++++...
T Consensus 197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999975 49999999999999966 999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=368.41 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=188.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+|++++||+..||+ .++|++|||++++||+++++||||||||||+|+|+|+.+|.+|+|.++|++. .
T Consensus 1 ~~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 1 APMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CCceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 368999999999999 6799999999999999999999999999999999999999999999999874 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
.|+||||...+|+.|||+|||.+++..... +...+...+++.++|= +.+ .+++.++|||||||.++|||||+.+|++
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 699999999999999999999986544322 1111122555666653 333 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||||.||-|.-.+++.+.|++++++ |.||+++.++...+.. +||.++|.+|+++.+|+.+++..+
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999955 8899999999999966 999999999999999999998754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-51 Score=380.18 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=186.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ 76 (321)
||+++|++++|++. +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 1 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 58999999999732 4599999999999999999999999999999999999999999999998542 45
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
|+|+||++. .+...|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999973 3334799999987543334444455566778899999865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|++++.|+++++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999998779999999999999976 99999999999999999998764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=369.82 Aligned_cols=200 Identities=30% Similarity=0.434 Sum_probs=173.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----cCeEEEEcCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----KKQLGFMPQQIS 85 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----~~~ig~v~Q~~~ 85 (321)
+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++|+||++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 46899999987 569999999999999999999999999999999999999999999999865 357999999987
Q ss_pred CC--CCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 86 LY--PEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 86 l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
++ ..+|+.||+.+...... ......++++..+++.++++. .++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 63 34799999987533211 112233456778889999865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++| +++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999998779999999999999976 9999999886 5444
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=375.87 Aligned_cols=212 Identities=27% Similarity=0.415 Sum_probs=186.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
..+|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999986 5899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++ +|+.||+.+....+ +.+..+..+++.++++.+++. ..++++.+||||||||++|
T Consensus 89 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred hHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 46999999998887 89999998765433 334444456677888888863 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.+++.+.+.|++++ ++.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999986 47899999999999976 999999999999999999888654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=388.76 Aligned_cols=218 Identities=22% Similarity=0.314 Sum_probs=192.5
Q ss_pred cceEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------ 74 (321)
+++|+++|+++.|+. +...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 578999999999953 2246999999999999999999999999999999999999996 99999998752
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQR 140 (321)
++|+|+||++ .+++.+|+.+++......+ +....+..+++.++++.+++.. .++++++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 3699999998 6889999999987655444 3445555667788899998853 367899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++||+||||+|||+.++..++++|+++++ .|.|+|++|||++++.. |||+++|++|+|++.|+++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999985 49999999999999976 999999999999999999999
Q ss_pred Hhhcc
Q psy106 219 LEKYN 223 (321)
Q Consensus 219 ~~~~~ 223 (321)
.+...
T Consensus 250 ~~~p~ 254 (330)
T PRK09473 250 FYQPS 254 (330)
T ss_pred HhCCC
Confidence 87543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=377.76 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=186.9
Q ss_pred eEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 8 AIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
||+++|+++.|++. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 69999999999631 25699999999999999999999999999999999999999999999988542
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++ .+++.+|+.||+.+..... ........+++.++++.+++. . .++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 3599999997 4677899999997654322 333334445677888999985 4 588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+++|++|||||||+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999999764 8999999999999976 99999999999999999998864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=374.69 Aligned_cols=214 Identities=22% Similarity=0.361 Sum_probs=187.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----c------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----K------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~------ 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 458999999999987 569999999999999999999999999999999999999999999998865 2
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~ 142 (321)
+.++|+||++. +++.+|+.+|+.+.....+. ...+.++.+.++++.+++. ..++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 25999999984 67778999998764332221 2233455677888899985 258899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 48999999999999976 99999999999999999988764
Q ss_pred h
Q psy106 221 K 221 (321)
Q Consensus 221 ~ 221 (321)
+
T Consensus 242 ~ 242 (258)
T PRK11701 242 D 242 (258)
T ss_pred C
Confidence 3
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=372.62 Aligned_cols=212 Identities=27% Similarity=0.456 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 478999999999987 5699999999999999999999999999999999999875 799999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ +|+.||+.+....++. ...+..+++..+++.+++. ..++++.+||+|||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 45999999999887 8999999876554443 2333445667788888763 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+++.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999876 5899999999999876 999999999999999999988654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=366.43 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +. .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +++||+|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe
Confidence 578999999986 32 399999999999999999999999999999999999999999998643 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+.........++.++++.++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999986533211111233456778889999875 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+|||+.++..++++|+++++ .|+|||++||+++++.. |||+++|++|++++.|
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999975 59999999999999976 9999999999997653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=366.63 Aligned_cols=203 Identities=29% Similarity=0.510 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQQ 83 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~ 83 (321)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|+||+
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC
Confidence 578999999987 6699999999999999999999999999999999999999999999988642 479999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+.+++.+|+.||+.+....++.. .+.+.++++.++++. .++++.+||+|||||++||||++.+|+++||||||+|
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 99999999999998765444432 235667788888875 6888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..|++++
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999998779999999999999976 99999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=378.63 Aligned_cols=214 Identities=25% Similarity=0.347 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999742 13599999999999999999999999999999999999999999999998653 46
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||+||++. +++..|+.||+.+.....+....+..++++.+++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 5667899999987654444444455566788889888865 68889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..++++|.+++++ |.|||++||+++++..||++++|++|++++.|+++++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999864 999999999999997799999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=374.95 Aligned_cols=211 Identities=26% Similarity=0.410 Sum_probs=186.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc--------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------- 74 (321)
.++|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred CcEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 468999999999987 66999999999999999999999999999999999999986 49999998542
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLI--------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQ 139 (321)
++++|+||++.+++.+|+.||+.+.... .+...++.++++.++++.+++.. .++++.+||+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence 3589999999999999999999865321 01112233456788889999864 68899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|++|||||+.+|++|||||||+|||+.+++.+++.|+++++ +|+|||++|||++++.. ||++++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 58999999999999866 99999999999999999987
Q ss_pred H
Q psy106 218 L 218 (321)
Q Consensus 218 l 218 (321)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 5
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=373.27 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=186.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK----- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~----- 74 (321)
.++||+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 9 ~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3568999999999987 569999999999999999999999999999999999987 3 699999988642
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+.+||+||++.+++. |+.||+.+....++. ...+..+++..+++.+++. ..++++.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 459999999988875 999999876544432 2334445567778887763 247889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|+++||||||+|||+.++..+++.|+++++ ++|+|++||+++++.. |||+++|++|++++.|+++++..+
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 99999999999999999999999999999999999865 7999999999999976 999999999999999999988654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=370.49 Aligned_cols=212 Identities=29% Similarity=0.402 Sum_probs=184.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CC---CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VL---NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p---~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 358999999999987 56999999999999999999999999999999999985 36 599999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ +|+.||+.+.....+.. ....++.+..+++.+++. ..++++.+||+|||||++|
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 36999999999887 79999998765444432 223345566777777762 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999865 6899999999999876 999999999999999999988654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=377.45 Aligned_cols=214 Identities=21% Similarity=0.331 Sum_probs=188.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
+..+|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 3568999999999987 5699999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY-G---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+++|+||++.+++.+|+.||+.+..... + ...+...+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 6999999999998999999997642111 0 111223456778889999865 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||+|||+.++..+.++|.++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999976 48999999999999976 99999999999999999888753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=372.63 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 47999999999987 5699999999999999999999999999999999999974 799999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.+||+||++.+++.+|+.||+.+....++. ...+.++.+.++++.+++. ..++++.+|||||||||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 4599999999999999999999876544332 3334455677788888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe------CCEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR------KGILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~------~G~i~~~g~~~~ 217 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|+ +|++++.|++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 999999999999999999999999999999999864 6899999999999976 99999997 799999999988
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14241 240 IFSN 243 (258)
T ss_pred HHhC
Confidence 8653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=369.87 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~----------~~ 76 (321)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999987 56999999999999999999999999999999999995 79999999998642 23
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG-------MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSLAIT 146 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~iA~a 146 (321)
++|+||++.+++.+|+.||+.+...... ....+..+++..+++.+++. . .++++. +||||||||++||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 8999999999999999999987543221 12223345677888899986 3 577776 599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHH
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l 218 (321)
|+.+|+++||||||+|||+.+++.++++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999999999999999999999999999999998778999999999999965 799999999999999988755
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=371.78 Aligned_cols=208 Identities=29% Similarity=0.454 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 46899999999987 5699999999999999999999999999999999999999999999998642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|+||++.+++ .|+.||+.+.....+ . ..+++.++++.++++ . .++++.+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 80 GMVFQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEEecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998887 699999876433222 1 124566788888985 3 578899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+|||+.+++.+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..|+++++...
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999876 49999999999999976 999999999999999999888653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=386.43 Aligned_cols=216 Identities=22% Similarity=0.332 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCccEEEECCccc------
Q psy106 7 CAIRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV----LNGGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~--~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~----p~~G~I~~~g~~~------ 74 (321)
++|+++|++++|+. +...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 11469999999999999999999999999999999999986 5899999998642
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHh---C---CCHHHHHHHHHHHHHHcCCcc----ccCCCCccCh
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMICYYGLIY---G---MSLQQIKEKAEYLQALLHLNH----FKRKCGSLSG 135 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~---~---~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSg 135 (321)
++|+|+||++. +.+.+|+.+++......+ + ....+.++++.++++.+++.. .++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 36999999985 678899999997543211 1 111234566788999999963 4788999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++.. |||+++|++|+|++.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999986 49999999999999976 9999999999999999
Q ss_pred ChhHHHhhc
Q psy106 214 PPKVLLEKY 222 (321)
Q Consensus 214 ~~~~l~~~~ 222 (321)
+++++....
T Consensus 242 ~~~~i~~~p 250 (330)
T PRK15093 242 PSKELVTTP 250 (330)
T ss_pred CHHHHHhCC
Confidence 999987643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=370.45 Aligned_cols=210 Identities=29% Similarity=0.413 Sum_probs=184.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~---------~ 75 (321)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++. +
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 6899999999987 569999999999999999999999999999999999974 7999999998652 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHHHHHHHh
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|+||++.+|+ .|++||+.+....++. .....++++..+++.+++. . .++++.+||||||||++|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999887 6999999876544332 1233445567788888883 2 47788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999864 8999999999999976 999999999999999999887653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=374.43 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=185.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+.
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 468999999999987 5699999999999999999999999999999999999975 899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+++||+||++.+++. |+.||+.+....++. +..+..+++..+++.+++. ..++++.+||||||||++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 459999999988875 999999876543332 2233345667788888884 246789999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6899999999999976 999999999999999999887643
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=374.20 Aligned_cols=212 Identities=27% Similarity=0.382 Sum_probs=183.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 19 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 19 EHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 478999999999987 669999999999999999999999999999999999864 7999999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++. |+.||+.+.....+.. ....++.+..+++.+++. ..++++.+||||||||++|
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 369999999998875 9999998764333321 222334556677777763 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999865 6899999999999876 999999999999999999888654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=366.71 Aligned_cols=211 Identities=32% Similarity=0.481 Sum_probs=189.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.+||+|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 478999999987 5699999999999999999999999999999999999999999999988643 5799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++.......+.+..+++.+++.. .++.+.+||+|||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987655544444444566778889999865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||+.+++.++++|+++++ .|.|||++||+++++.. |||+++|++|++.+.|+++++...
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999975 49999999999999876 999999999999999988877643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=391.13 Aligned_cols=205 Identities=27% Similarity=0.436 Sum_probs=184.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------c
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------K 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~ 74 (321)
||++ |++|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~-~l~k~~~~--~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 5888 99999987 33 3 8999999999999999999999999999999999999999998753 1
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++||+||++.+|+.+|+.||+.+... ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l 149 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL 149 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999999999999987532 112355778889999875 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||||+|||+.++..+++.|++++++ |+|+|++|||++++.. ||++++|++|+++..|+++++..+..
T Consensus 150 lLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999754 8999999999999977 99999999999999999999987643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=373.50 Aligned_cols=210 Identities=23% Similarity=0.376 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999987 6699999999999999999999999999999999999999999999988642 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 80 MPQQISLYPEFTIDEMICYYGLI----YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||++.+++.+|+.||+.+.... +.....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999888889999999874211 11122233456777888888865 68899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998778999999999999966 99999999999999999887743
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=379.03 Aligned_cols=213 Identities=27% Similarity=0.386 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 7 CAIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
..|+++|++++|+++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997631 2499999999999999999999999999999999999999999999987531
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++. +++ .|+.||+.+.....+....+..+++..+++.+++. . .++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 36999999973 443 69999998765433444444455677788888984 3 68899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||+.+|++|||||||+|||+.+++.++++|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999875 58999999999999876 99999999999999999988754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=356.72 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=189.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||.++++.++|+. .=-.++++|+.||+++|+||||||||||+++|+|+..|.+|+|+++|.+. +-++++
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5788999999987 23678899999999999999999999999999999999999999999874 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||+.++|..+||.+|+.++....-.-..+.+++++.++..+|+.. .+|.|.+|||||||||+|||+|+++-++++||||
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP 156 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP 156 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc
Confidence 999999999999999987653321113445677888889999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+|||..+.++..++.+++ +++.|++|+||+++++.+ +|+++++++|+|.+.|+.+++...
T Consensus 157 FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 157 FSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999998 679999999999999987 999999999999999999988754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=366.19 Aligned_cols=210 Identities=30% Similarity=0.503 Sum_probs=188.2
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ + +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEe
Confidence 578999999986 4 89999999999999999999999999999999999999999999998643 4799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++++|||||
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 99999999999999987654444444445566777888899865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||+.+++.+++.+++++++ |.|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999998754 9999999999999876 999999999999999998877653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=368.84 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=185.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~-------- 74 (321)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 5899999999987 569999999999999999999999999999999999986 4 699999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++. ..++.+.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 3599999999999999999999875443332 2333445677788888873 246789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++....
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTP 238 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999975 5899999999999966 9999999999999999999886543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=367.89 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=184.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCC--CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ---NVL--NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl---~~p--~~G~I~~~g~~~------ 74 (321)
.+||+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+.
T Consensus 1 ~~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 1 TVKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred CcEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 368999999999987 5699999999999999999999999999999999997 455 589999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ .|+.||+.+.....+.. .....+.++++++.+++. ..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 35999999998887 59999998765444332 223445667788888873 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+++.|++++ +++|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999999985 47999999999999966 999999999999999999988654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=407.74 Aligned_cols=211 Identities=24% Similarity=0.386 Sum_probs=189.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 68999999999987 6699999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHh---C-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIY---G-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||+||++.+++.+|+.||+.+....+ + .+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754322 1 223334556778899999975 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999998779999999999999976 9999999999999999887653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=367.63 Aligned_cols=210 Identities=29% Similarity=0.420 Sum_probs=183.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~-------- 74 (321)
+|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999987 5699999999999999999999999999999999999763 699999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++ +|+.||+.+....++. ...+.++.+.++++.+++. ..++++.+||||||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 36999999998887 8999999876544443 2333455667777777753 247889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999854 7999999999999876 999999999999999999887654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=406.58 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=190.3
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
-++.++|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 6 ~~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 6 TTAPPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred CCCCceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 344578999999999987 6699999999999999999999999999999999999999999999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+.+||+||++.+++.+|+.||+.+.... ..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3599999999999999999999875321 1233456778889999875 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998789999999999999976 99999999999999999887643
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=365.73 Aligned_cols=210 Identities=31% Similarity=0.462 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++|++++|++ +.+|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.+. +.++|+|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEe
Confidence 478999999987 5799999999999999999999999999999999999999999999988653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987655444433334456677888888864 68889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||+.+++.++++|.+++++ |+|||++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999998765 8999999999999876 99999999999999999988864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-50 Score=372.99 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=183.8
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~---- 74 (321)
+..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34578999999999987 569999999999999999999999999999999999987 6999999988542
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc----c-ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN----H-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~----~-~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++.+++ .|+.||+.+.....+... ..++.+..+++.+++. . .++++.+||+|||||++
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 36999999999888 499999987654433322 2334556667777652 2 57889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-----------CEEE
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-----------GILL 210 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-----------G~i~ 210 (321)
|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++ |+++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999999999999999999999999999999999864 7999999999999976 999999996 6789
Q ss_pred EecChhHHHhh
Q psy106 211 EESPPKVLLEK 221 (321)
Q Consensus 211 ~~g~~~~l~~~ 221 (321)
+.|+++++...
T Consensus 244 ~~~~~~~~~~~ 254 (269)
T PRK14259 244 EFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHhC
Confidence 99999988654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-50 Score=360.89 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=177.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
++++|++++|++ .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 478999999974 46899999999999999999999999999999999999999999998653 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+............++++.++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999986533221112223455677888899865 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 161 SGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
+|||+.++..++++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999875 48999999999999866 99999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=406.99 Aligned_cols=212 Identities=26% Similarity=0.362 Sum_probs=189.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~--------- 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 468999999999987 6799999999999999999999999999999999999996 899999988642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHh--C-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIY--G-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+++||+||++.+++.+|+.||+.+....+ + .+..+..+++.++++.+++.. .++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 45999999999999999999998764332 1 233344566788899999865 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|++|||||||+|||+.++..++++|.+++++|+|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999998779999999999999976 9999999999999999987753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=361.22 Aligned_cols=198 Identities=31% Similarity=0.468 Sum_probs=174.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
|+++ ||+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 1 MLCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred Ccee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 3455 99999998 445 99999999 99999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++++|+||++.+++.+|+.||+.+....+ .....++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 36999999999999999999998754322 22233456778889999865 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
+||||||+|||+.+++.++++|++++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999764 8999999999999976 9999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=388.22 Aligned_cols=204 Identities=26% Similarity=0.387 Sum_probs=182.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------CeEEE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQLGF 79 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ig~ 79 (321)
|++|+|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999987 43 4 99999999999999999999999999999999999999999988532 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+|+.+|+.||+.+..... ...+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999999999999998764322 22333456788899999975 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+|||+.+++.+++.|++++++ |+|||++|||++++.. ||++++|++|+++..|+++++....
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999764 8999999999999976 9999999999999999999987654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=366.54 Aligned_cols=211 Identities=28% Similarity=0.427 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~-------- 74 (321)
||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 6999999999987 56999999999999999999999999999999999999874 89999988542
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++.+|+.||+.+.....+. ..++..+.+..+++.+++. ..++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 3699999999999999999999875443332 2233344555555655542 247889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999864 7999999999999976 999999999999999999988654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=366.06 Aligned_cols=213 Identities=27% Similarity=0.407 Sum_probs=184.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 2 DPKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred CceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 357999999999987 56999999999999999999999999999999999999997 69999987532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++. |+.||+.+....++.. .+...+.++.+++.+++. ..++++.+||||||||++|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred hHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 469999999998875 9999998765443332 222344566667776653 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||+.+|+++||||||+|||+.++..+.++|++++ +++|||++||+++++.. ||++++|++|++++.|+++++....
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999985 58999999999999977 9999999999999999999886543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=366.33 Aligned_cols=213 Identities=23% Similarity=0.357 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----c-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----K------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~------- 74 (321)
+||+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 58999999999987 569999999999999999999999999999999999999999999998754 1
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQIS--LYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++. +++.+|+.+|+.+...... .......+.+.++++.+++. ..++++.+|||||||||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 25899999974 4566789999865432221 11223345677888899985 3688999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++..+
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999999865 58999999999999976 999999999999999999887653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=405.72 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=189.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999999987 5699999999999999999999999999999999999999999999988542 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH----HhCC---CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL----IYGM---SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++||+||++.+++.+|+.||+.+... .++. +..+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 59999999999999999999976432 1121 22344566788899999865 6889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 99999999999999999999999999999998779999999999999976 9999999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=365.76 Aligned_cols=211 Identities=31% Similarity=0.469 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
+||+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 47999999999987 6699999999999999999999999999999999999874 899999988532
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ +|++||+.+....++.. ....++.+.++++.+++.. .++++.+||||||||++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 46999999999887 89999998765443322 2233455667778777632 5788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999999999865 7899999999999866 999999999999999999887643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=365.34 Aligned_cols=211 Identities=27% Similarity=0.460 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 57999999999987 669999999999999999999999999999999999987 4899999988642
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ .|+.||+.+.....+.. ....++.+.++++.+++. ..++++.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 35999999998886 79999998764443332 222345567778888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999864 6999999999999876 999999999999999999887643
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=365.09 Aligned_cols=214 Identities=28% Similarity=0.424 Sum_probs=184.5
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~---- 74 (321)
...+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 2 ~~~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 2 TMEIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred CccceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 34578999999999987 669999999999999999999999999999999999975 3 489999987542
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv 141 (321)
++++|+||++.+++. |++||+.+....++. .....++.+.++++.+++. ..++++.+||+|||||+
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence 459999999998875 999999876554432 2223345566677777662 25788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||+.+|+++||||||+|||+.+++.+.++|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999999875 5899999999999976 99999999999999999988764
Q ss_pred h
Q psy106 221 K 221 (321)
Q Consensus 221 ~ 221 (321)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=368.08 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 468999999999987 679999999999999999999999999999999999986 5899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.++|+||++.+++ .|+.||+.+.....+. ...+.++++.++++.+++. ..++++.+||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 36999999998887 5999999876543332 2333445667778888773 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+.++|++++ ++.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999986 47999999999999866 999999999999999999988643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=357.60 Aligned_cols=192 Identities=33% Similarity=0.502 Sum_probs=171.9
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------cCeE
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------KKQL 77 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~~~i 77 (321)
++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4799999987 569999999999999999999999999999999999999999999998865 1469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
+|+||++.+++.+|+.||+.+.....+....+..+++.++++.++++. .++++.+||+|||||++|||||+.+|+++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999988654444444445566788899999865 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
||||+|||+.++..++++|++++++|.|||++||+++.++.||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999887799999999999987669999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=364.16 Aligned_cols=211 Identities=27% Similarity=0.434 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 47999999999987 6699999999999999999999999999999999999986 599999988532
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHHH
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA~ 145 (321)
+.++|+||++.+++ .|+.||+.+.....+.. ....++++.++++.+++. ..++++.+|||||||||+|||
T Consensus 80 ~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 45999999999887 89999998764433322 223345566677777753 246789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|+++||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999999999999875 5899999999999876 999999999999999998887543
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-51 Score=353.65 Aligned_cols=222 Identities=30% Similarity=0.465 Sum_probs=203.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
++.|+++|+.|+||. ..+|++||++..+|+++.|+|.+||||||+||||.=|.+|+.|.|.++|+..
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 467999999999999 6799999999999999999999999999999999999999999999987642
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv 141 (321)
.+.|+|||+.++|..||+.||+.-. ....+.++.+..++++.++..+|+.+ .+.+|..||||||||+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 3689999999999999999998643 34457788888899999999999975 6789999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||+.+|+++++|||||+|||+...++++.+++|+++|+|.+++||.+.++.. +.+++++++|.|-++|+|++++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999987
Q ss_pred hcccccHHH
Q psy106 221 KYNMKSLED 229 (321)
Q Consensus 221 ~~~~~~l~~ 229 (321)
++..+.+..
T Consensus 242 nP~S~Rlkq 250 (256)
T COG4598 242 NPQSPRLKQ 250 (256)
T ss_pred CCCCHHHHH
Confidence 765554443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=364.18 Aligned_cols=191 Identities=30% Similarity=0.506 Sum_probs=170.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEEc-CCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFMP-QQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v~-Q~~~l~~~ltv~ 93 (321)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|+| |++.+++.+|+.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999999988642 4699998 557788889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy106 94 EMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172 (321)
Q Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 172 (321)
||+.+....++....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99987665555544455566778888888865 68889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 173 NHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 173 ~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
++|+++++ .|.|||++||+++++.. ||++++|++|++++.|
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999975 48999999999999976 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=364.21 Aligned_cols=209 Identities=21% Similarity=0.311 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CccEEEECCccc-------Ce
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL----NGGNIHLSITSK-------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p----~~G~I~~~g~~~-------~~ 76 (321)
+|+++|++++| + +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. +.
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 69999999999 4 4699999999999999999999999999999999999999 999999998652 46
Q ss_pred EEEEcCCCC--CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 77 LGFMPQQIS--LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 77 ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++|+||++. +.+.+|+.+++.+.....+.... .+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 999999984 45667999988765443333222 356777888888864 4788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999875 48999999999999976 999999999999999999988654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=370.93 Aligned_cols=211 Identities=28% Similarity=0.450 Sum_probs=184.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999987 6899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+++. |+.||+.+.....+... ...+++.++++.+++. ..++++.+||||||||++||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 469999999988875 99999987655444332 3345677788888873 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEE-EEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIG-LMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~-il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.+++.++++|++++++ .|||++||+++++.. |||++ +|++|++++.|+++++..+
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999764 899999999999976 99975 6799999999999887654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=368.36 Aligned_cols=212 Identities=22% Similarity=0.371 Sum_probs=182.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 468999999999987 569999999999999999999999999999999999987 6999999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCC----cc-ccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHL----NH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l----~~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++ .|+.||+.+....++.. ....++.+.++++.+++ .. .++++.+||||||||++|
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 46999999999887 49999998765443332 22223444555555532 22 578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999865 7999999999999876 999999999999999999888654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=362.28 Aligned_cols=212 Identities=31% Similarity=0.422 Sum_probs=182.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--L---NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p---~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 568999999999987 679999999999999999999999999999999999875 5 599999988642
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
+.+||+||++.+++ .|+.+|+.+.....+.. ....++.+.+.++.+++. ..++++.+||+|||||++|
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 46999999998888 69999998765444322 222234455566666542 2578899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.+++.+.++|+++++ +.|||++||+++++.. |||+++|++|+++..|++.++...
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 5899999999999976 999999999999999999887654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=407.90 Aligned_cols=216 Identities=25% Similarity=0.349 Sum_probs=191.4
Q ss_pred cceEEEEeEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSSK---------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~---------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.++|+++|+++.|+.. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4689999999999621 13599999999999999999999999999999999999999999999988532
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQ 139 (321)
++|+|+||++ .+++.+||.||+.+....++. ...+.++++.++++.+++. . .++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 3699999997 588999999999876544443 2334456778899999995 3 68999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++++.. |||+++|++|++++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999999754 9999999999999977 99999999999999999999
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+...
T Consensus 551 i~~~ 554 (623)
T PRK10261 551 VFEN 554 (623)
T ss_pred HhcC
Confidence 8754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=372.40 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-C----CccEEEECCccc------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-L----NGGNIHLSITSK------ 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p----~~G~I~~~g~~~------ 74 (321)
.++++||+..|... ...+++||||++++||++||+|.||||||||.+.|+|+++ | .+|+|.++|++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999999642 2469999999999999999999999999999999999997 4 579999998742
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG-M-SLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQR 139 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqkQ 139 (321)
++|+|+||+| +|.|-+|+.+.+.-....+. . .+++.++++.++++.++++. .++++++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 5899999998 58888999988876666543 3 35667788999999999964 48899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||.||.||+.+|++||.||||++||...+.+++++|+++++ .|+|+|++|||+..+.. ||||+||..|+|++.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999999999999999985 79999999999999976 99999999999999999999
Q ss_pred HHhhcccc
Q psy106 218 LLEKYNMK 225 (321)
Q Consensus 218 l~~~~~~~ 225 (321)
++.+...+
T Consensus 241 i~~~P~HP 248 (316)
T COG0444 241 IFKNPKHP 248 (316)
T ss_pred HhcCCCCh
Confidence 98775543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=367.46 Aligned_cols=212 Identities=30% Similarity=0.434 Sum_probs=184.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 368999999999987 569999999999999999999999999999999999987 4899999987542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++. |+.||+.+.....+.. ....++.+.++++.+++. ..++++.+||||||||++|
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 469999999998886 9999998765444332 223345567777877773 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..++++|+++++ +.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999999999999999999999975 7899999999999976 999999999999999999887643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=364.51 Aligned_cols=209 Identities=28% Similarity=0.456 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999974325699999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|+.||+.+... ........+. +..+++.+ +++. .++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999976431 1112111111 12233333 3332 46788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.++..+.+.|++++ +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999986 48999999999999977999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=367.99 Aligned_cols=212 Identities=30% Similarity=0.391 Sum_probs=185.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 578999999999987 6799999999999999999999999999999999999985 799999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+ +|+.||+.+...... ....+..+.+.++++.+++.. .++.+.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 46999999999888 899999987543322 233344455666778888742 4678999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 4899999999999876 999999999999999999988654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=409.24 Aligned_cols=217 Identities=22% Similarity=0.309 Sum_probs=192.0
Q ss_pred CcceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------
Q psy106 5 DKCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS--------- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~--------- 73 (321)
..+||+++|+++.|++. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 35799999999999631 1469999999999999999999999999999999999999999999987630
Q ss_pred --------------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCc
Q psy106 74 --------------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGS 132 (321)
Q Consensus 74 --------------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~ 132 (321)
.++|||+||++ .+++.+||.||+.+....+ +.+..+.++++.++++.+++.. .++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 13699999998 6888899999999876543 4555556677888999999952 5889999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~ 210 (321)
|||||||||+|||||+.+|++|||||||++||+.++.+++++++++++ .|+|||++|||++++.. |||+++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999999999999999999999999999999999999975 49999999999999976 9999999999999
Q ss_pred EecChhHHHhh
Q psy106 211 EESPPKVLLEK 221 (321)
Q Consensus 211 ~~g~~~~l~~~ 221 (321)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (623)
T PRK10261 249 ETGSVEQIFHA 259 (623)
T ss_pred ccCCHHHhhcC
Confidence 99999888653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=370.91 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=184.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------ccEEEECCccc-----
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--------GGNIHLSITSK----- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~--------~G~I~~~g~~~----- 74 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 5899999999987 56999999999999999999999999999999999999998 99999998642
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+.++|+||++.+++.+|+.||+.+..... +....+..+.+..+++.+++.. .++++.+|||||||||+|||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 35899999987666799999998743211 1111233455777888899865 68899999999999999999
Q ss_pred HHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 146 TLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 146 aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||+ .+|++|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||++++|++|++++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 599999999999999999999999999998765 8999999999999976 99999999999999999
Q ss_pred hhHHHh
Q psy106 215 PKVLLE 220 (321)
Q Consensus 215 ~~~l~~ 220 (321)
++++.+
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 888753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=369.07 Aligned_cols=213 Identities=29% Similarity=0.421 Sum_probs=184.3
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK----- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~----- 74 (321)
..++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 3568999999999987 569999999999999999999999999999999999864 4999999988531
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~ 142 (321)
+++||+||++.+++. |+.||+.+....++.. ....++.+.++++.+++. ..++++.+||||||||++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 469999999998875 9999998765443332 223345566677777762 257889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++++.. |||+++|++|+++..|+++++.++
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999865 6899999999999976 999999999999999999888654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=363.54 Aligned_cols=212 Identities=26% Similarity=0.447 Sum_probs=185.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----ccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-----GGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 57999999999987 56999999999999999999999999999999999999985 89999987541
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+.++|+||++.+++ +|+.||+.+.....+. +..+..+.+..+++.+++. ..++++.+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 35999999998888 8999999876443332 2333345567778888763 24788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeC-----CEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRK-----GILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~-----G~i~~~g~~~~ 217 (321)
|||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||+++++.. |||+++|++ |+++..|++++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 999999999999999999999999999999999874 58999999999999976 999999999 99999999998
Q ss_pred HHhh
Q psy106 218 LLEK 221 (321)
Q Consensus 218 l~~~ 221 (321)
+.+.
T Consensus 243 ~~~~ 246 (261)
T PRK14258 243 IFNS 246 (261)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=366.90 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----
Q psy106 7 CAIRVENAYKRHSSK-------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----- 74 (321)
+||+++|+++.|+++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 479999999999730 15699999999999999999999999999999999999999999999988642
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~ 142 (321)
++++|+||++ .+++..|+.+|+.+.... ......+..+.++++++.+++. . .++++.+||+|||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 4699999997 467788999998764332 2333334445678888999985 3 58899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||+++++.. ||++++|++|++++.|+++++.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999999999999999875 48999999999999976 9999999999999999998875
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=364.20 Aligned_cols=214 Identities=24% Similarity=0.393 Sum_probs=187.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC------cc-----
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI------TS----- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g------~~----- 73 (321)
.+|+|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 3689999999999998 6799999999999999999999999999999999999999997776654 32
Q ss_pred ----cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 74 ----KKQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 ----~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
.++++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++. ..++++..||+|||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 14699999999999999999999876543332 2334445677888888874 2477899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999864 6999999999999966 999999999999999999988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=393.57 Aligned_cols=219 Identities=28% Similarity=0.398 Sum_probs=196.9
Q ss_pred CcceEEEEeEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--
Q psy106 5 DKCAIRVENAYKRHSS---------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-- 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~---------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-- 73 (321)
..|+++++||+|+|.. +...+++||||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999983 22579999999999999999999999999999999999999999999998865
Q ss_pred ---------cCeEEEEcCCC--CCCCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHH
Q psy106 74 ---------KKQLGFMPQQI--SLYPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQR 139 (321)
Q Consensus 74 ---------~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQ 139 (321)
.+++-++||+| ++.|.+||.+++......++.. ..+.++++.++++..++.. ++++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 14688888887 6899999999999887766432 4555677899999999974 69999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|+||||||+.+|++|++|||||.||+..+.++.++|+++++ .|.|.+++|||++.+++ ||||++|++|+|++.|+.++
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999985 59999999999999988 99999999999999999998
Q ss_pred HHhhcc
Q psy106 218 LLEKYN 223 (321)
Q Consensus 218 l~~~~~ 223 (321)
+++...
T Consensus 517 v~~~p~ 522 (539)
T COG1123 517 VFENPQ 522 (539)
T ss_pred HhcCCC
Confidence 876543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=362.61 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------- 74 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 57999999999987 5699999999999999999999999999999999999985 489999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+ +|+.||+.+.....+ .+.....+.+.++++.+++. ..++++.+||+|||||++||
T Consensus 84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 36999999999887 899999987654332 23333345566777777762 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe-----CCEEEEecChhHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR-----KGILLEESPPKVL 218 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~-----~G~i~~~g~~~~l 218 (321)
|||+.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++.. |||+++|+ +|++++.|+++++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 999999999999999999999999999999999865 6999999999999976 99999998 5999999999988
Q ss_pred Hhh
Q psy106 219 LEK 221 (321)
Q Consensus 219 ~~~ 221 (321)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14260 242 FSN 244 (259)
T ss_pred hcC
Confidence 653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=360.88 Aligned_cols=209 Identities=27% Similarity=0.440 Sum_probs=181.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc---------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK--------- 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~--------- 74 (321)
-+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999987 679999999999999999999999999999999999986 4799999988532
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGM--SLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA~ 145 (321)
++++|+||++.+++. |+.||+.+....++. .....++.+..+++.+++.. .++++.+||||||||++|||
T Consensus 84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 369999999988886 999999876433332 22233455677888888742 46788999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999985 48999999999999976 999999999999999999887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=397.85 Aligned_cols=214 Identities=27% Similarity=0.437 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC-Ccc--------
Q psy106 6 KCAIRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-ITS-------- 73 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~---~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~-g~~-------- 73 (321)
.+||+++|++++|++ +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 468999999999952 22469999999999999999999999999999999999999999999995 421
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------ccCCCCccChHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------FKRKCGSLSGGQQRR 140 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------~~~~~~~LSgGqkQR 140 (321)
.+++||+||++.+++.+|+.||+.+.... ..+....++++.++++.+++.. .++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 14599999999999999999999875332 2233333456778889999853 578999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|+|||||+.+|++|||||||+|||+.+++.++++|+++++ .|.|||++|||++++.. |||+++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999975 49999999999999977 999999999999999998887
Q ss_pred Hh
Q psy106 219 LE 220 (321)
Q Consensus 219 ~~ 220 (321)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 54
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=364.91 Aligned_cols=211 Identities=28% Similarity=0.442 Sum_probs=181.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 368999999999987 569999999999999999999999999999999999976 4899999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
+++||+||++.+++ .|+.||+.+.....+.. ....+++..+++..++. ..++++.+||||||||++||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred hHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 36999999998887 49999998765433222 12234455566666652 24778999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe---------CCEEEEecC
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR---------KGILLEESP 214 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~---------~G~i~~~g~ 214 (321)
|||+.+|++|||||||+|||+.++..++++|.++++ ++|||++||+++++.. |||+++|+ +|++++.|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 999999999999999999999999999999999875 5899999999999976 99999998 899999999
Q ss_pred hhHHHhh
Q psy106 215 PKVLLEK 221 (321)
Q Consensus 215 ~~~l~~~ 221 (321)
++++.+.
T Consensus 243 ~~~~~~~ 249 (264)
T PRK14243 243 TEKIFNS 249 (264)
T ss_pred HHHHHhC
Confidence 9998654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=365.59 Aligned_cols=211 Identities=27% Similarity=0.442 Sum_probs=181.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~------ 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 469999999999987 5699999999999999999999999999999999999863 699999988532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+++. |+.||+.+.....+.. ...++.+..+++.+++. ..++++.+|||||||||+||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred hHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 469999999988874 9999998764433221 12233455566666652 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe---------CCEEEEecC
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR---------KGILLEESP 214 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~---------~G~i~~~g~ 214 (321)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++.. |||+++|+ +|++++.|+
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 999999999999999999999999999999999875 6899999999999976 99999998 899999999
Q ss_pred hhHHHhh
Q psy106 215 PKVLLEK 221 (321)
Q Consensus 215 ~~~l~~~ 221 (321)
++++...
T Consensus 253 ~~~~~~~ 259 (274)
T PRK14265 253 TEQMFGS 259 (274)
T ss_pred HHHHHhC
Confidence 9988654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=358.25 Aligned_cols=204 Identities=20% Similarity=0.258 Sum_probs=177.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++
T Consensus 5 ~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 468999999999987 5699999999999999999999999999999999999999999999998642 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++|+||++.+++ .|+.||+.+....++... ..+++.++++.+++. . .++++.+||+|||||++|||||+.+|+++
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998887 499999987544433221 234566788888984 3 58899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEe-CCEEEEecC
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMR-KGILLEESP 214 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~-~G~i~~~g~ 214 (321)
||||||+|||+.++..+.++|+++++ .|.|||++||++++++.||++++|+ ++..+++|+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999875 5899999999999997799999995 444445543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=439.72 Aligned_cols=218 Identities=28% Similarity=0.506 Sum_probs=200.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
..+|+++|++|+|+++.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 468999999999986335699999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+|++|++.+.+..++.+.++.+++++++++.+++.. .++++++|||||||||+||+||+.+|+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998888777766666677888999999965 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||+||||.+++.++++|++++++|+|||++||++++++. |||+++|++|++++.|+++++++++.
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999998779999999999999987 99999999999999999999977653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=365.99 Aligned_cols=212 Identities=23% Similarity=0.373 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+.+|+++|++++|+++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++++|
T Consensus 4 ~~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred hceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 3479999999999632 5699999999999999999999999999999999999999999999998653 36999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 80 MPQQISLY--PEFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 80 v~Q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+||++.++ ...++.+++.+... .........++++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99998653 23468888764311 011111223455677888888865 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++||||||+|||+.+++.+.++|++++++|+|||++||+++++.. ||+++++ +|+++..|+++++.
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999998779999999999999876 9999777 89999999998875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=353.87 Aligned_cols=201 Identities=28% Similarity=0.369 Sum_probs=178.7
Q ss_pred EEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 9 IRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
|+++|+++.|+++. +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997521 4599999999999999999999999999999999999999999999988642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+.++|+||++.+++++|+.||+.+....+. ....+..+.+.++++.+++.. .++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999988655442 334445566788899999865 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
++||||||+|||+.++..+.++|+++++ .|+|||++||+++..+.||++++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999875 58999999999986656999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=396.90 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~---- 74 (321)
++||+++|++++|+++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4589999999999731 14699999999999999999999999999999999999986 799999988541
Q ss_pred ---------CeEEEEcCCCC--CCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHHH
Q psy106 75 ---------KQLGFMPQQIS--LYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ---------~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGqk 138 (321)
+++||+||++. +++.+|+.+|+.+.... .+.+..+..+++.++++.+++.. .++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 36999999975 67778999998765432 24444455677888999999853 4789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||||+.+|++|||||||++||+.++..++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999754 8999999999999976 9999999999999999998
Q ss_pred HHHhh
Q psy106 217 VLLEK 221 (321)
Q Consensus 217 ~l~~~ 221 (321)
++...
T Consensus 243 ~~~~~ 247 (529)
T PRK15134 243 TLFSA 247 (529)
T ss_pred HHhhC
Confidence 88653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=355.90 Aligned_cols=206 Identities=30% Similarity=0.424 Sum_probs=177.9
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc------Ce
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~------~~ 76 (321)
.+.++|++++|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46899999999764 2579999999999999999999999999999999999999 9999999998653 57
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCC---CHHHHHHHHHH-HHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAEY-LQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~-ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++|+||++.+++.+|+.||+.+....... ......+++.. .++.+++.. .++.+.+||+|||||++|||||+.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999876543321 11222233444 777778765 57889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh-hHHhh-cCEEEEEeCCEEEEec
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI-DEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l-~~~~~-~drv~il~~G~i~~~g 213 (321)
+++||||||+|||+.++..+++++++++++|.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999887799999999999 57765 9999999999998764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=358.84 Aligned_cols=209 Identities=27% Similarity=0.403 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 578999999986323699999999999999999999999999999999999999999999998542 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-----KAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|++||+.+.... .......+ .+.+.++.+ ++.. .++++.+||+|||||++|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 6999999865321 11121111 123334433 3433 56789999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||||||+|||+.++..+.+.|++++ ++.|||++||+++++..||++++|++|++++.++++++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999999986 48999999999999977999999999999999998887544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=395.37 Aligned_cols=208 Identities=22% Similarity=0.320 Sum_probs=185.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 2 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 2 SPYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred CceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 468999999999987 5699999999999999999999999999999999999999999999988542 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH--HhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL--IYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
++||+||++.+++.+|+.||+.+... ..+ ....+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 69999999999999999999987532 112 223444566788899999864 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. |||+++|++|+++..++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998789999999999999976 999999999999876653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=397.39 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=187.9
Q ss_pred cceEEEEeEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSS---------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~---------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.+||+++|+++.|++ +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|.+.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 468999999999962 11469999999999999999999999999999999999984 899999988532
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqk 138 (321)
+++||+||++ .+++++|+.||+.+....++ .+..+.++++.++++.+++. . .++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 3599999997 48888999999987654332 23334456677889999996 3 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999864 8999999999999976 9999999999999999999
Q ss_pred HHHhh
Q psy106 217 VLLEK 221 (321)
Q Consensus 217 ~l~~~ 221 (321)
++.+.
T Consensus 512 ~~~~~ 516 (529)
T PRK15134 512 RVFAA 516 (529)
T ss_pred HHhcC
Confidence 88653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=355.74 Aligned_cols=197 Identities=25% Similarity=0.339 Sum_probs=173.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CccEEEECCccc-------CeEEEEcCCCC--CCCCCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL----NGGNIHLSITSK-------KQLGFMPQQIS--LYPEFT 91 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p----~~G~I~~~g~~~-------~~ig~v~Q~~~--l~~~lt 91 (321)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. ++++|+||++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 899999998652 47999999985 567789
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc---c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN---H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~---~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
+.+|+.+.....+....+..+++.++++.+++. . .++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 999997655443333334456678889999986 2 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 168 AEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 168 ~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++.+++.|+++++ .|+|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999976 48999999999999976 999999999999999999988653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=359.59 Aligned_cols=213 Identities=30% Similarity=0.422 Sum_probs=183.4
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCcc------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITS------ 73 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~------ 73 (321)
...+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 13 ~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3578999999999987 5699999999999999999999999999999999999875 79999997642
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHcCCc-----cccCCCCccChHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ-QIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRR 140 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQR 140 (321)
.+.+||+||++.+++. |+.||+.+.....+.... ..++.+..+++.+++. ..++++.+||+|||||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 1469999999998886 999999876543333222 2234566666766652 2468899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||+++|++|++++.|+.+++.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999875 6899999999999976 9999999999999999998876
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
..
T Consensus 249 ~~ 250 (265)
T PRK14252 249 IK 250 (265)
T ss_pred hC
Confidence 54
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=394.47 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=185.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~----------~ 75 (321)
+|+++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|.+. +
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4899999999987 5699999999999999999999999999999999999987 799999988542 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHh--C--CCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHHHHHHHHHhc
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIY--G--MSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
++||+||++.+++.+|+.||+.+..... + ...++..+++.++++.+++.. . ++++++|||||||||+|||||+.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 6999999999999999999998754322 1 223344566788899999864 3 57799999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
+|++|||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999998789999999999999976 999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=357.41 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=181.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc--------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK--------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~--------~ 75 (321)
.+||+++|+++.|++ +.+|+|+||++++||++||+||||||||||+++|+|+ ++|++|+|.++|.+. .
T Consensus 5 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 5 KPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred CceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 468999999999987 5699999999999999999999999999999999998 579999999988642 1
Q ss_pred --eEEEEcCCCCCCCCCCHHHHHHHHHHHhC----C---CHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHH
Q psy106 76 --QLGFMPQQISLYPEFTIDEMICYYGLIYG----M---SLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSL 143 (321)
Q Consensus 76 --~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~----~---~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~i 143 (321)
.++|+||++.+++.+|+.+|+.+...... . ...+..+++.++++.+++. . .++++. +|||||||||+|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 37899999999999999999876433211 1 1122335567788888886 3 577776 599999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~ 217 (321)
||||+.+|+++||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|++++.|+++.
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999998779999999999999964 89999999999999998873
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=394.46 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=186.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEEC----------------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLS---------------- 70 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~---------------- 70 (321)
|+++|++++|++ +.+|+|+||++++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999987 56999999999999999999999999999999999997 7999999986
Q ss_pred -------Ccc-------------------cCeEEEEcCC-CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Q psy106 71 -------ITS-------------------KKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123 (321)
Q Consensus 71 -------g~~-------------------~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l 123 (321)
|.+ .+++||+||+ +.+++.+|+.||+.+.....+.+..+.++++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 210 1459999997 6788889999999886555555555556678889999999
Q ss_pred cc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCE
Q psy106 124 NH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHM 200 (321)
Q Consensus 124 ~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~dr 200 (321)
+. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ .|+|||++|||++++.. ||+
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 75 6889999999999999999999999999999999999999999999999999964 59999999999999976 999
Q ss_pred EEEEeCCEEEEecChhHHHh
Q psy106 201 IGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 201 v~il~~G~i~~~g~~~~l~~ 220 (321)
+++|++|+++..|+++++..
T Consensus 239 i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEEEeCCEEeeecCHHHHHH
Confidence 99999999999999887754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=357.84 Aligned_cols=193 Identities=30% Similarity=0.384 Sum_probs=170.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+.+|+||++.+++.+|+.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999998654 236899999999999999999987532
Q ss_pred H--hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 102 I--YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 102 ~--~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
. .+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 1 22333444556778899999865 68899999999999999999999999999999999999999999999999998
Q ss_pred Hh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 179 AE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 179 ~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
++ .|+|||++||+++++.. ||++++|++|++++.|++.++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 75 48999999999999876 999999999999998876654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=356.61 Aligned_cols=200 Identities=22% Similarity=0.334 Sum_probs=174.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. +..+...+++
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~~~~~~ 97 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGLGGGFNP 97 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch---hhcccccCCC
Confidence 678888999988 67999999999999999999999999999999999999999999999987532 2222345677
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
.+|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 8999999987765554444444556777888888865 688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
++.+++.|++++++|+|||++||+++++.. ||++++|++|++++.|
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999988778999999999999976 9999999999998754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=349.55 Aligned_cols=192 Identities=25% Similarity=0.262 Sum_probs=171.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++|
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 5899999999987 5699999999999999999999999999999999999999999999998652 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
++|++.+++.+|+.||+.+....++. ...++++.+++.+++.. .++++.+||||||||++|||||+++|+++||||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 155 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999887654432 22356777889999865 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhc-CEEEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKS-HMIGLM 204 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~-drv~il 204 (321)
||+|||+.++..++++|++++++|.|||++||+++++..| +|++.+
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999887789999999999999775 577665
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=356.22 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc-------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------- 74 (321)
.+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 2 ~~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 2 YRIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred cEEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 36899999999987 569999999999999999999999999999999999864 4899999988542
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGM-SLQQIKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~iA 144 (321)
++++|+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++. ..++++.+||+|||||++||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 469999999998875 999999876443332 2233456677788888763 24788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999864 7999999999999977 999999999999999999988544
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=359.97 Aligned_cols=202 Identities=25% Similarity=0.391 Sum_probs=177.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
+||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..++|+||++.+
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~ 78 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYL 78 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEecccccc
Confidence 58999999999987 56999999999999999999999999999999999999999999999874 469999999887
Q ss_pred CCCC--CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 87 YPEF--TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 87 ~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
++.+ |+.+++.+. .+.. .+++..+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 79 ~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 79 DTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred ccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 7764 677766432 1111 234567788888865 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+.++..+++.|++++++ |.|||++||+++++.. ||++++|++ ++++.|+++++..
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 999999999999998765 8999999999999976 999999965 7999999988754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=341.10 Aligned_cols=207 Identities=28% Similarity=0.386 Sum_probs=189.7
Q ss_pred CcceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------
Q psy106 5 DKCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------- 74 (321)
....|++++++|..+.. ...+|++|+|.|++||.++|+||||||||||+-+++|+..|++|+|.+.|++.
T Consensus 3 ~~~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 3 AENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ccceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 34479999999987643 36799999999999999999999999999999999999999999999988652
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|||||.+.+.|+||..||+..+..+.+-+..+.+..+..+++.+++.. ++.+|.+|||||||||+||||++
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 689999999999999999999999998887555556677888999999976 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeCCEEEE
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLE 211 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~G~i~~ 211 (321)
..|++|+.||||.+||...-.++.+++-.++ +.|+|.+++|||...+.+|+|.+.|++|+++.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999987 67999999999999999999999999999975
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=350.36 Aligned_cols=196 Identities=20% Similarity=0.227 Sum_probs=175.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGF 79 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~ 79 (321)
+++|+++|++++|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 9 PPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred cceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 478999999999987 5699999999999999999999999999999999999999999999998643 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+....++.. ..+.+..+++.+++.. .++++.+||+|||||++||||++.+|+++||||
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999899999998765443322 2345567788888864 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
||+|||+.+++.+++++++++++|.|||++|||++++.. ||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999988789999999999999976 999998864
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=352.14 Aligned_cols=197 Identities=23% Similarity=0.339 Sum_probs=172.2
Q ss_pred eEEEEeEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC--Cc--c-----
Q psy106 8 AIRVENAYKRHSSK-----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS--IT--S----- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~--g~--~----- 73 (321)
||+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 58999999999631 1369999999999999999999999999999999999999999999997 32 1
Q ss_pred --------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHH
Q psy106 74 --------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 --------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~i 143 (321)
.+++||+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||+|||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1369999999999999999999987554444443444566778888899864 377899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLM 204 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il 204 (321)
||||+.+|+++||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. |||++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999998779999999999999976 9999865
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=369.61 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
..+|+++|++++|.++.+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45899999999996433569999999999999999999999999999999999986 5799999988753
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcCCc-----cccCCCCccChHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ-IKEKAEYLQALLHLN-----HFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~ll~~~~l~-----~~~~~~~~LSgGqkQRv~i 143 (321)
++++|+||++.+++ .|++||+.|.....+....+ .++.+..+++.+++. ..++++.+||||||||++|
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 46999999999885 79999999765443333222 233456667777652 2478899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||++||+++++.. |||+++|++|++++.|+++++.+..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999998875 6999999999999987 9999999999999999999987654
Q ss_pred c
Q psy106 223 N 223 (321)
Q Consensus 223 ~ 223 (321)
.
T Consensus 316 ~ 316 (329)
T PRK14257 316 K 316 (329)
T ss_pred C
Confidence 3
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=357.04 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 9 IRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
|+++|+++.|++. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999752 14599999999999999999999999999999999999999999999998542 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+++ .|+.||+.+..... ...+..+. +..+++.+ ++.. .++++.+|||||||||+|||||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998876 69999997643211 11111111 11222222 2332 4677899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.||++++|++|++++.++++++..
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999987 7999999999999997799999999999999999887754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=392.24 Aligned_cols=206 Identities=21% Similarity=0.345 Sum_probs=183.4
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEEEE
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLGFM 80 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig~v 80 (321)
++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4789999987 5699999999999999999999999999999999999999999999998642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-HhC--CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 81 PQQISLYPEFTIDEMICYYGL-IYG--MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||++.+++.+||.||+.+... ..+ ....+..++++++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999986532 112 123334456778888898864 6889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999998789999999999999976 999999999999999998775
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=352.46 Aligned_cols=197 Identities=27% Similarity=0.409 Sum_probs=167.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975324599999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccC-----------CCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKR-----------KCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~-----------~~~~LSgGqkQRv~iA~aL 147 (321)
+||++.+++ .|+.||+.+.... .. .+.+.++++.+++.. .++ .+.+||||||||++|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998886 6999998764211 11 123445566666643 333 3479999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
+.+|++|||||||+|||+.++..++++|++++++ +|||++||++++++.||++++|++|++++.|
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999998764 8999999999988669999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=356.53 Aligned_cols=213 Identities=23% Similarity=0.366 Sum_probs=185.3
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc----
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK---- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~---- 74 (321)
...+.+.+++++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 4 EAPIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred CCCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 34578999999999987 6799999999999999999999999999999999999986 799999988642
Q ss_pred -------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~ 142 (321)
+.++|+||++.++ .+|+.||+.+....++. ..+..+.+.++++.+++.. .++++.+||+|||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 3599999999888 58999999876544332 2233456777888888732 35678999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe--------CCEEEEec
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR--------KGILLEES 213 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~--------~G~i~~~g 213 (321)
|||||+++|++|||||||+|||+.++.+++++|++++ +++|+|++||+++++.. |||+++|+ +|++++.|
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999986 47999999999999876 99999996 89999999
Q ss_pred ChhHHHhh
Q psy106 214 PPKVLLEK 221 (321)
Q Consensus 214 ~~~~l~~~ 221 (321)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=385.40 Aligned_cols=301 Identities=22% Similarity=0.260 Sum_probs=226.6
Q ss_pred ceEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----ccEEEECCccc------
Q psy106 7 CAIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN----GGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~----~G~I~~~g~~~------ 74 (321)
++|+++||++.|.... ..+++||||+|++||++||+|.|||||||+.++|+|++++. +|+|.++|.+.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 4899999999996432 35999999999999999999999999999999999999987 89999998642
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCcc-c--cCCCCccChHHHHHH
Q psy106 75 -------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLNH-F--KRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~-~--~~~~~~LSgGqkQRv 141 (321)
++|+|+||+| .+-|-+|+.+.+.-....++ ...++.++++.++++.+++++ . +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 6799999998 46666899888876555554 446778888999999999975 2 359999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
.||+||+.+|++||+||||++||+..+.+++++|++++ +.|+++|++|||+..+.+ ||||++|++|++++.|++++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999998 579999999999999977 9999999999999999999999
Q ss_pred hhcccccHHHHHHHhhhcchhhHHHhhhccc---ccchhhhhHHHHHHhhcCCc-----ccCccchhhhhhcCceeeeEE
Q psy106 220 EKYNMKSLEDVFLLLSSKQQHDRIEQRRKSF---LWPIQAIQEHTRYLANFLPL-----TYPIDSFRSIVFRGFDIFHWQ 291 (321)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~ 291 (321)
+++..+--................ ...... ..++-.+.. +...... .-....++++....+++...+
T Consensus 244 ~~p~hpYT~~Ll~a~p~~~~~~~~-~~~~~~~~~~~~ll~V~~----l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE 318 (539)
T COG1123 244 SNPQHPYTRGLLAAVPRLGDEKII-RLPRRGPLRAEPLLSVRN----LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318 (539)
T ss_pred hccCCcccHHHHhhCCCccccccc-ccccccccccCceeEeee----eeeeeccccccccccccceeeeeeeeeEecCCC
Confidence 876543222211111110000000 000000 000000100 1111110 001234677888899999999
Q ss_pred EEeeeecchhhHHHHHHHHHhh
Q psy106 292 VYYGFLSSTGWIVGLTLVCWIL 313 (321)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~ 313 (321)
++ |+.|--|-==.++.=++++
T Consensus 319 ~l-glVGeSGsGKSTlar~i~g 339 (539)
T COG1123 319 TL-GLVGESGSGKSTLARILAG 339 (539)
T ss_pred EE-EEECCCCCCHHHHHHHHhC
Confidence 99 9998776544444333333
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=393.25 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=185.0
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~~~--------- 74 (321)
.++|+++|+++.|+. +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358999999999942 11469999999999999999999999999999999999998 5999999988542
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHH--HhC---CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGL--IYG---MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++ .+++++|+.||+.+... ... ....+.++++.++++.+++. . .++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 3599999996 47888999999986431 211 12233445678889999985 3 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||||+.+|++|||||||+|||+.+++.++++|.+++++|+|||++|||++++.. |||+++|++|+++..|+++++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999998789999999999999977 999999999999999988765
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=357.37 Aligned_cols=209 Identities=21% Similarity=0.323 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCC------------------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC
Q psy106 9 IRVENAYKRHSS------------------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70 (321)
Q Consensus 9 I~v~nl~k~y~~------------------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~ 70 (321)
++++|++|.|.. ..+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 899999998754 11358999999999999999999999999999999999999999999998
Q ss_pred CcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 71 ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 71 g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|. +++++|++.+++.+|+.||+.+.....+...++..+.++.+++.+++.. .++++.+||+|||||++|||||+.
T Consensus 85 g~----~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~ 160 (264)
T PRK13546 85 GE----VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV 160 (264)
T ss_pred CE----EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhh
Confidence 75 6788888888888999999987554444444444555667788888865 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++|||||||+|||+.+++.+++.+.+++++|+|||++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 161 ~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 161 NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999999999999999999998779999999999999976 999999999999999999988654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=353.02 Aligned_cols=207 Identities=28% Similarity=0.360 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++. +.+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 7899999999742 3599999999999999999999999999999999999999999999988542 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++. |+.||+.+.... ....+..+. ....++.+ ++.. .++++.+||+||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988875 999999764221 111111111 11222222 2322 45678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.||++++|++|++++.++.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999986 5899999999999987799999999999999998877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=352.48 Aligned_cols=209 Identities=20% Similarity=0.315 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~----------~ 75 (321)
||+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.+. .
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 5899999999987 56999999999999999999999999999999999995 69999999998642 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH-H--hC----CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL-I--YG----MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSLAI 145 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~-~--~~----~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~iA~ 145 (321)
.++|+||++.+++.++..+++.+... . .. .......++++++++.+++. . .++++. +||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 59999999988888887776543211 1 10 11112345567778888884 2 456664 89999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++.. ||++++|++|+++..|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999998778999999999999975 899999999999999988744
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=342.60 Aligned_cols=210 Identities=30% Similarity=0.441 Sum_probs=194.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQ 82 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q 82 (321)
+++.+++++.+|++....+|+|+|++|.+||+++++||||||||||+|+++|+.+|+.|+|.++|... ..-|.|||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 67899999999998545599999999999999999999999999999999999999999999998754 45699999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.++|.+++.||+.|+.++.++++.+..+++.+.+..+++.. .++++.+|||||||||.|||||+.+|++|+||||++
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 9999999999999999999999999888888999999999976 478899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChh
Q psy106 162 GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPK 216 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~ 216 (321)
+||.-.++.+.+++.++. +.|+.++++|||++|+-. ++|+++|+- |+|++.-+++
T Consensus 162 AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 162 ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999986 569999999999999987 999999985 7888876665
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=362.26 Aligned_cols=212 Identities=28% Similarity=0.422 Sum_probs=182.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCccEEEECCccc------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-----LNGGNIHLSITSK------ 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~------ 74 (321)
+++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 457999999999987 569999999999999999999999999999999999986 6899999988532
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHh------------CCC-HHHHHHHHHHHHHHcCCc-----cccCCCC
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIY------------GMS-LQQIKEKAEYLQALLHLN-----HFKRKCG 131 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~------------~~~-~~~~~~~~~~ll~~~~l~-----~~~~~~~ 131 (321)
++++|+||++.+++ .|+.||+.+..... +.. ....++.+..+++.+++. ..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 46999999998887 49999998754321 111 122245567778887763 2478899
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEE-EEEeCCEE
Q psy106 132 SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMI-GLMRKGIL 209 (321)
Q Consensus 132 ~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv-~il~~G~i 209 (321)
+||||||||++|||||+++|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++ ++|++|++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 9999999999999999999999999999999999999999999999876 4899999999999976 9996 57799999
Q ss_pred EEecChhHHHhh
Q psy106 210 LEESPPKVLLEK 221 (321)
Q Consensus 210 ~~~g~~~~l~~~ 221 (321)
++.|+++++.+.
T Consensus 279 ~~~g~~~~~~~~ 290 (305)
T PRK14264 279 VEYDDTDKIFEN 290 (305)
T ss_pred EEeCCHHHHHhC
Confidence 999999887654
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=345.69 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=194.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++..+ +.+|+++||++.+||+.+|+||||||||||||.|+|...|++|++.++|.+. ++-+
T Consensus 1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 6899999999988 6799999999999999999999999999999999999999999999998763 5679
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc------
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMS--LQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------ 149 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------ 149 (321)
.+||+..+-..+||.|.+.++...++.. ..+..+.++.++...++.. ..+.+.+|||||||||.+||.|++
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 9999998866789999999887666432 2244556778888888865 578899999999999999999987
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~ 228 (321)
++++|+||||||+||+..+..++++.++++++|..|+.+-||++.+.. |||+++|++|++++.|+|+++++. +.++
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~---Etl~ 235 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD---ETLE 235 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH---HHHH
Confidence 456999999999999999999999999999999999999999999865 999999999999999999998764 4566
Q ss_pred HHH
Q psy106 229 DVF 231 (321)
Q Consensus 229 ~~~ 231 (321)
.+|
T Consensus 236 ~vy 238 (259)
T COG4559 236 RVY 238 (259)
T ss_pred HHh
Confidence 655
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=344.09 Aligned_cols=197 Identities=26% Similarity=0.303 Sum_probs=169.5
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
.+...|+++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 34567999999999985324699999999999999999999999999999999999999999999998642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+.++|+||++.+++ .|+.||+.+.. .... +.+.+.++ .++++.+||||||||++|||||+.+|+++
T Consensus 82 ~~i~~v~q~~~~~~-~tv~~~l~~~~---~~~~----~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~ll 147 (207)
T cd03369 82 SSLTIIPQDPTLFS-GTIRSNLDPFD---EYSD----EEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVL 147 (207)
T ss_pred hhEEEEecCCcccC-ccHHHHhcccC---CCCH----HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 56999999998887 49999996532 1111 11222222 35788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecCh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~ 215 (321)
||||||+|||+.++..++++|++++ +|.|+|++||+++++..||++++|++|+++..|++
T Consensus 148 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 148 VLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999985 58999999999999977999999999999887764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=388.77 Aligned_cols=203 Identities=24% Similarity=0.355 Sum_probs=179.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +.+|
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 7999999999987 5699999999999999999999999999999999999999999999877532 3489
Q ss_pred EEcCCCCC--C-C-----CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 79 FMPQQISL--Y-P-----EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 79 ~v~Q~~~l--~-~-----~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|+||++.+ + + .+|+.|++.+. .+.++++.++++.++++. .++++.+|||||||||+||+||+.
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99998653 1 1 46888876532 122356778889999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998779999999999999977 99999999999999999888754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=382.99 Aligned_cols=215 Identities=25% Similarity=0.373 Sum_probs=195.4
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|++...+.++++|++|+||+ .++|+++||++.+||++||+|.||||||||+|+|+|.++|++|+|.++|+..
T Consensus 1 ~~~~~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 1 MTMSTPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred CCCCccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHH
Confidence 34555678999999999999 7799999999999999999999999999999999999999999999999753
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~ 145 (321)
..|+.|+|+.++.|++||.||+.+...... ++.+..++++.++++.+++. ..+.++++||.||||.|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 469999999999999999999987544322 45667778888999988874 378899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh-hH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP-KV 217 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~-~~ 217 (321)
||..+++++|||||||+|+....+.+++++++++++|.+||++||.++|+.. |||+.+|++|+.+.+.+. .+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999999999999999999999999999999999999999977 999999999999998873 44
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=350.37 Aligned_cols=207 Identities=25% Similarity=0.364 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999632 4599999999999999999999999999999999999999999999998642 45999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+||++.+++ .|+.||+.+... .....+..+. +...++.+ +++. .++++.+||+|||||++|||||+.+|
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 699999976432 1122211111 11222222 2222 45678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.++..++++|.++++ |+|||++||+++++..||++++|++|+++..|+++++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999876 999999999999997799999999999999999887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=344.32 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=171.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMP 81 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~ 81 (321)
||+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 7999999999987 5699999999999999999999999999999999999999999999998652 4689999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+++.+|+.||+.+....++.. .+.+.++++.+++.. .++++++||||||||++|||||+.+|+++||||||
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9988888999999998765443322 134677888888864 57889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
+|||+.++..++++|++++++|+|||++||+++++.. |+++-++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999988779999999999999987 88877743
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=428.17 Aligned_cols=215 Identities=33% Similarity=0.509 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig 78 (321)
+.|+++||+|.|+++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 47999999999963225799999999999999999999999999999999999999999999998653 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+||++.+++.+||+||+.++++.++.+.++.+++++++++.++++. .++++++|||||||||+||+||+.+|+++|||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999887777665556677888999999975 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+||||.+++.++++|++++ +|+|||++||++++++. |||+++|++|++++.|+++.+++++
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999985 59999999999999987 9999999999999999999997654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=354.69 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=177.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++||++. . +|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.+. +.+||
T Consensus 1 ~~~~~l~~~--~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS--T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh--c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 357888885 1 7999999999999999999999999999999999986 499999998642 35899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------CC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH-------DP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~-------~P 151 (321)
+||++.+++.+|+.+|+.+.... .....+..++++++++.+++.. .++++.+||+|||||++|||||+. +|
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 99999888889999999875321 2222334456778888899865 688999999999999999999998 67
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999999998779999999999999876 99999999999999999887753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=388.89 Aligned_cols=206 Identities=27% Similarity=0.453 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++.|+ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. +
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 45899999999763 289999999999999999999999999999999999999999999988532 4
Q ss_pred eEEEEcCC---CCCCCCCCHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHH
Q psy106 76 QLGFMPQQ---ISLYPEFTIDEMICYYGLIY--------GM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 76 ~ig~v~Q~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv 141 (321)
++||+||+ +.+++++|+.||+.+....+ +. .....++.+.++++.+++. . .++++++|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 69999998 46889999999997643210 11 1223335567888999995 4 6899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
+|||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..++.
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999998779999999999999976 999999999999988765
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=343.06 Aligned_cols=188 Identities=24% Similarity=0.273 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 578999999987 6699999999999999999999999999999999999999999999988652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+..... ..++++++++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999998999999998753211 2345677888888865 5788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLM 204 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il 204 (321)
|+|||+.+++.+++.|++++++|.|+|++||+..+... |++++.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999988779999999999888755 9999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=347.01 Aligned_cols=197 Identities=25% Similarity=0.338 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999975334699999999999999999999999999999999999999999999988642 56999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+||++.+++ .|+.||+.+... ... +.+.+.++.+++.. .++++.+||+|||||++|||||
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 999998776 599999864321 122 22223333333321 2468899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
+.+|+++||||||+|||+.+++.++++|+++++ +.|||++||+++++..||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999864 689999999999997799999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=347.86 Aligned_cols=220 Identities=27% Similarity=0.431 Sum_probs=199.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++|++|+|++ +.+++++|++|++|.+++|+|||||||||||.+++.|+++++|+|+++|.+. ++++
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6899999999999 7799999999999999999999999999999999999999999999998764 5789
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
.+-|+..+-..+||+|.+.|+...| |....+.+..+.++++.+++.. .+++..+||||||||..||+.++++.++++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 9999999988999999998865444 4445667788899999999976 589999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHH
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~ 232 (321)
||||.++||.....++++.++++++ -|+||+++-||++++.. +|+|+.|++|+++..|+|+++.+. +.+.+.|.
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~---~~L~eiyd 234 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP---EILSEIYD 234 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH---HHHHHHhc
Confidence 9999999999999999999999985 59999999999999976 999999999999999999999754 45555553
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=386.54 Aligned_cols=212 Identities=22% Similarity=0.300 Sum_probs=182.5
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~--------- 74 (321)
.++|+++|++++|++ +...+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 358999999999932 114599999999999999999999999999999999999985 899999988532
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHH--Hh---CCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGL--IY---GMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~---~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++ .+++++|+.+|+.+... .. .......++++.++++.+++. . .++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 4699999996 58899999999976431 11 122233345677889999985 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. |||+++|++|+++...+.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998789999999999999976 99999999999998776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=340.96 Aligned_cols=188 Identities=26% Similarity=0.319 Sum_probs=167.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
||+++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 5899999999987 5699999999999999999999999999999999999999999999998642 47999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+++.+|+.||+.+..... .. ...+.++++.+++.. .++++.+||+|||||++||||++.+|+++||||
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999988999999998754221 11 235677888888864 578889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
||+|||+.++..+++.|++++++|.|||++||+.+.+..||.-.
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999998777999999999999998898644
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=333.53 Aligned_cols=164 Identities=42% Similarity=0.730 Sum_probs=153.8
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
++++|++++|++ ..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 478999999987 5699999999999999999999999999999999999999999999988642 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
||++.+++.+|+.||+. ||+|||||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999873 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
+|||+.++..+.++|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999998779999999999999976 999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=334.44 Aligned_cols=164 Identities=29% Similarity=0.471 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 578999999975334599999999999999999999999999999999999999999999998542 56999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+||++.+++. |+.||+ ||||||||++|||||+.+|+++|||||
T Consensus 81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999988874 999987 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
|+|||+.++..+++.|++++++|+|||++||++++++.||++++|++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999998779999999999999866999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=378.01 Aligned_cols=214 Identities=21% Similarity=0.350 Sum_probs=187.0
Q ss_pred CCcceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 4 KDKCAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
.+.+|++++|++++|+++. +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++++
T Consensus 17 ~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~----~~i~~ 92 (549)
T PRK13545 17 YNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA----ALIAI 92 (549)
T ss_pred cccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe----eeEEe
Confidence 3457899999999987642 359999999999999999999999999999999999999999999999864 23334
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+.+++.+|+.||+.+.....+....+..+++..+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 93 ~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 93 SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 5567778999999987654445445555566778889999865 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|++++.|+++++...
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999988779999999999999977 999999999999999999988654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=348.71 Aligned_cols=200 Identities=25% Similarity=0.405 Sum_probs=170.0
Q ss_pred cceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 6 KCAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
.++|+++|++++|++.. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 47899999999997521 3599999999999999999999999999999999999999999999998642 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-----EKAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++|+||++.+++ .|+.||+.+.... ....+.. ..+..+++.+ ++.. .++++.+|||||||||+|||||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 6999999998876 5999999764321 1111111 1234566666 5654 5788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||++++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999865 6899999999999977999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=334.73 Aligned_cols=170 Identities=26% Similarity=0.448 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 578999999986323699999999999999999999999999999999999999999999998642 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
||++.+++ .|++||+ +.+||+|||||++|||||+.+|+++||||||
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99998876 6999886 6789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
+|||+.+++.+++.|++++ ++.|||++||++++++.||++++|++|++++.|
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999985 589999999999999779999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=337.36 Aligned_cols=178 Identities=30% Similarity=0.482 Sum_probs=160.5
Q ss_pred eEEEEeEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc------C
Q psy106 8 AIRVENAYKRHSSK----LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~----~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~------~ 75 (321)
.|+++|++++|++. .+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+. +
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48999999999752 146999999999999999999999999999999999999 99999999998753 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+++|+||++.+++.+|+.||+.+..... +||+|||||++|||||+.+|+++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~ill 134 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPSLLF 134 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6999999999999999999987532110 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-HHhh-cCEEEEEeCCEEEEec
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-EAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~~~-~drv~il~~G~i~~~g 213 (321)
|||||+|||+.+++.+.++|++++++|+|+|++||+++ ++.. ||++++|++|++.+.|
T Consensus 135 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999998877999999999997 5655 9999999999997653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=339.59 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=161.2
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc--------
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK-------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~-------- 74 (321)
.+.++|++|.|+++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999743 3679999999999999999999999999999999999999 8999999988642
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++++|+||++.+++.+|+.||+.+..... .++++.+||+|||||++|||||+.+|+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 46999999999999999999997643210 45678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEE-ecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILI-TTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil-~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
||||||+|||+.+++.++++|++++++ +.|+|+ ++|+.+++.. ||++++|++|+++..|
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999754 666555 4566788865 9999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=335.29 Aligned_cols=167 Identities=29% Similarity=0.454 Sum_probs=154.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 4689999999998 79999999999999999999999999999999999999999999988542 4
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++|+||++ .+++.+|+.||+.+... ||+|||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~ 124 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPR 124 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCC
Confidence 699999995 57888999999876421 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
++||||||+|||+.+++.+++++++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 125 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999997778999999999999977 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=334.14 Aligned_cols=165 Identities=38% Similarity=0.635 Sum_probs=153.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQL 77 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~i 77 (321)
|+++|++++|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999987 5699999999999999999999999999999999999999999999988531 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+|+||++.+++.+|+.||+.+. ||+|||||++|||||+.+|+++|||
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilD 125 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLD 125 (178)
T ss_pred EEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999889999987642 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
|||+|||+.++..++++|++++++ |.|+|++||+++++.. ||++++|++|+
T Consensus 126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999876 8999999999999986 99999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=327.64 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=193.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc--------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------- 73 (321)
.|+++|+++.||. ..+|.||+|+-++||.+.++||+|||||||+|.+.=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 4899999999999 679999999999999999999999999999999999999999999986532
Q ss_pred -cCeEEEEcCCCCCCCCCCHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 74 -KKQLGFMPQQISLYPEFTIDEMICY-YGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 74 -~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++++|+|||...++|.+||.||+.- +.+..++++++.+.++.++++.+.+.. .|+.+-.|||||+|||+|||||+++
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 1579999999999999999999864 456678888888899999999999876 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|++|++||||++|||+-..++.++|+++...|.|-+++||..+.++. |.||+.|++|+|++.|+.+-+
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999999999987 999999999999999997654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=335.26 Aligned_cols=178 Identities=30% Similarity=0.424 Sum_probs=159.5
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc-----CeEE
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK-----KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~-----~~ig 78 (321)
+|+++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|++. ++++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 58999999999741 145999999999999999999999999999999999986 48999999998652 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|+||++.+++.+|++||+.+.... + +||||||||++|||||+.+|+++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~----------------~------------~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALL----------------R------------GLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHH----------------h------------cCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 999999999999999999864210 0 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-Hhh-cCEEEEEeC-CEEEEec
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-AKK-SHMIGLMRK-GILLEES 213 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~~~-~drv~il~~-G~i~~~g 213 (321)
||+|||+.++..+++.+++++++|+|||++||++++ +.. ||++++|++ |++++.|
T Consensus 135 P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999988779999999999984 554 999999999 9998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=355.52 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|++....+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.+. ++++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999995322569999999999999999999999999999999999997 799999998652 47999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCc-----------cChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGS-----------LSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~-----------LSgGqkQRv~iA~aL 147 (321)
+||++.+|+. |+++|+..+. .... +.+.++++.+++.. .++.+.. ||+|||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~---~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYG---KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhcc---CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999975 9999996432 1122 33455667778754 4666655 999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.+|+++||||||++||+.++..+.+.|+++. +++|||++||+++++..|||+++|++|++++.|+++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 99999999999999999999999999999874 58999999999999877999999999999999999998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=336.96 Aligned_cols=187 Identities=25% Similarity=0.287 Sum_probs=164.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGFM 80 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~v 80 (321)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.++|+
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEe
Confidence 578999999987 6799999999999999999999999999999999999999999999998652 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+|+.||+.+.....+. + ++.+.++++.+++.. .++++.+||||||||++||||++.+|++++||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~---~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGG---A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCC---c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999888889999999876544331 1 235667888888865 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
|+|||+.++..++++|.+++++|.|||++||+...+ .|++++
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 999999999999999999877799999999998543 256654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=384.29 Aligned_cols=208 Identities=24% Similarity=0.281 Sum_probs=180.6
Q ss_pred cceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
++||+++|++++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .++||+||++
T Consensus 4 ~~~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~ 79 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEP 79 (556)
T ss_pred cEEEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCC
Confidence 56899999999998 6 66999999999999999999999999999999999999999999998753 5799999999
Q ss_pred CCCCCCCHHHHHHHHHHH-h-------------CCCH----------------------HHHHHHHHHHHHHcCCccccC
Q psy106 85 SLYPEFTIDEMICYYGLI-Y-------------GMSL----------------------QQIKEKAEYLQALLHLNHFKR 128 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-~-------------~~~~----------------------~~~~~~~~~ll~~~~l~~~~~ 128 (321)
.+++.+|+.||+.+.... + .... .+..+++..+++.+++...++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 999999999999864211 0 1110 011345667788888865688
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
++++|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||++|||++++.. ||++++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 999999999999999999999999999999999999999999999998763 599999999999987 9999999999
Q ss_pred EEE-EecChhHHHh
Q psy106 208 ILL-EESPPKVLLE 220 (321)
Q Consensus 208 ~i~-~~g~~~~l~~ 220 (321)
+++ +.|+.+++.+
T Consensus 237 ~i~~~~g~~~~~~~ 250 (556)
T PRK11819 237 RGIPWEGNYSSWLE 250 (556)
T ss_pred EEEEecCCHHHHHH
Confidence 986 7888887654
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=349.30 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=174.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|++..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +.+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 56999999999986334699999999999999999999999999999999999999999999988642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE-----KAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+|+||++.+++ .|+.||+..... .......+ .+...++.+ +++. .++++.+||+|||||++|||||+.
T Consensus 98 ~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 98 SIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred EEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998887 499999853211 11111111 112233333 3432 456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|+++||||||+|||+.++..+++++.+++ ++.|||++||+++++..|||+++|++|++++.|+++++...
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999999999998875 48999999999999977999999999999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=379.85 Aligned_cols=206 Identities=21% Similarity=0.305 Sum_probs=178.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
||+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .++||+||++.++
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~ 76 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAF 76 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcC
Confidence 5899999999987 67999999999999999999999999999999999999999999999874 4699999999999
Q ss_pred CCCCHHHHHHHHHH-H----------hCCC---------------------HHHHHHHHHHHHHHcCCcc-c-cCCCCcc
Q psy106 88 PEFTIDEMICYYGL-I----------YGMS---------------------LQQIKEKAEYLQALLHLNH-F-KRKCGSL 133 (321)
Q Consensus 88 ~~ltv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~ll~~~~l~~-~-~~~~~~L 133 (321)
+.+|+.||+.+... . ...+ ..+.++++..+++.+++.. . ++++.+|
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 99999999976421 0 0000 0112345677888899864 3 5788999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE-EE
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL-LE 211 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i-~~ 211 (321)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+ .|.|||++|||++++.. ||++++|++|++ ++
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999863 58999999999999976 999999999999 47
Q ss_pred ecChhHHHh
Q psy106 212 ESPPKVLLE 220 (321)
Q Consensus 212 ~g~~~~l~~ 220 (321)
.|+++++..
T Consensus 234 ~g~~~~~~~ 242 (530)
T PRK15064 234 PGNYDEYMT 242 (530)
T ss_pred cCCHHHHHH
Confidence 899887754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=335.39 Aligned_cols=176 Identities=24% Similarity=0.378 Sum_probs=159.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc----------Ce
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~----------~~ 76 (321)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999987 5699999999999999999999999999999999999 479999999988642 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
++|+||++.+++.+++.+++ ++...+||||||||++|||||+.+|+++||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl 128 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999888887765 122358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh--hcCEEEEEeCCEEEEecChh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK--KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~--~~drv~il~~G~i~~~g~~~ 216 (321)
||||+|||+.++..++++|++++++|+|||++||++++++ .||++++|++|++++.|+.+
T Consensus 129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 9999999999999999999999877899999999999997 59999999999999998544
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=334.01 Aligned_cols=172 Identities=30% Similarity=0.484 Sum_probs=151.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------CeEEEEcCCCC--CCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------KQLGFMPQQIS--LYPE 89 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~~ig~v~Q~~~--l~~~ 89 (321)
+.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++++|+||++. ++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 5699999999999999999999999999999999999999999999988542 35999999973 44 4
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
.|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 799999987654444444445566778888889865 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+.++++|++++++|+|||++||+++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999987799999999998763
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=336.29 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=158.4
Q ss_pred EEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 9 IRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 9 I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
|+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +|+|+||++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~ 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPW 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCch
Confidence 57899999998632 2599999999999999999999999999999999999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+++ .|+.||+.+.... ......+..+ ..+... +++ ..++++.+||+|||||++|||||+.+|+++|||
T Consensus 77 l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 77 IQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred hcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 884 6999999874321 1111111111 111111 122 135678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 158 EPTSGIDPVIAEEIWN-HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~-ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|||+|||+.+++.+++ +++++.++|.|||++||+++++..||++++|++|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998 56666666899999999999997799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=378.77 Aligned_cols=206 Identities=23% Similarity=0.379 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 35799999984 269999999999999999999999999999999999999999999988542 3
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHH--Hh---C-CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGL--IY---G-MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
++||+||++ .+++.+|+.||+.+... .. + ....+.+++++++++.+++. . .++++.+|||||||||+||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 599999996 57888999999986431 11 1 12233345677889999984 3 7899999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
|||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999998779999999999999977 999999999999999988765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=376.97 Aligned_cols=206 Identities=23% Similarity=0.348 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
+.++++|++. ..+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|++. ++
T Consensus 256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4688999973 2389999999999999999999999999999999999999999999988542 46
Q ss_pred EEEEcCCC---CCCCCCCHHHHHHHHHHHh----C--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHH
Q psy106 77 LGFMPQQI---SLYPEFTIDEMICYYGLIY----G--MSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 77 ig~v~Q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
++|+||++ .+++.+|+.||+.+..... + ......++.+.++++.+++. . .++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999996 4888899999997643211 1 12222335677888999983 3 68999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||+.+|++|||||||+|||+.++++++++|.+++++|.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999998889999999999999977 999999999999999988764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=377.98 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
+.||+++|++++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+++. .+|||+||++
T Consensus 2 ~~~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~ 77 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEP 77 (552)
T ss_pred cEEEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccC
Confidence 45899999999998 5 56999999999999999999999999999999999999999999998753 5799999999
Q ss_pred CCCCCCCHHHHHHHHHHH-h-------------CCCHHH----------------------HHHHHHHHHHHcCCccccC
Q psy106 85 SLYPEFTIDEMICYYGLI-Y-------------GMSLQQ----------------------IKEKAEYLQALLHLNHFKR 128 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~ll~~~~l~~~~~ 128 (321)
.+++++|+.||+.+.... . .....+ ..+++.++++.++++..++
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 999999999999864221 0 111010 1234556677777755678
Q ss_pred CCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 89999999999999999999999999999999999999999999999876 3599999999999987 9999999999
Q ss_pred EEE-EecChhHHHh
Q psy106 208 ILL-EESPPKVLLE 220 (321)
Q Consensus 208 ~i~-~~g~~~~l~~ 220 (321)
+++ +.|+.+++.+
T Consensus 235 ~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 235 RGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEecCCHHHHHH
Confidence 976 7788887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=387.95 Aligned_cols=203 Identities=25% Similarity=0.377 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.++|.+. ++||
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5999999999964336799999999999999999999999999999999999999999999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.++.. .+.++ +.++++..++++ .......||||||||++||||
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP---LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC---CCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999976 99999987522 23332 333444444321 123346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+.+++.+.|+++ ++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999775 5899999999999988999999999999999999998753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=364.70 Aligned_cols=207 Identities=28% Similarity=0.390 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+.+++++++|+|++ ..+++||||+|++||+.||+|.||||||||+++|.|+++|++|+|.++|+.. .
T Consensus 2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 356999999999998 7899999999999999999999999999999999999999999999999763 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
.||+|+|++.+++++||.||+.++... ...+..+.+++++++.+.++++. .++++.+||-||||||.|.+||.++|
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 699999999999999999999987532 12456677888999999999974 78999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
++|||||||+-|-|...+++++.+++++++|+|||++||-++|+.. |||+-+|++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999987 99999999999876655
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=329.23 Aligned_cols=167 Identities=33% Similarity=0.522 Sum_probs=148.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC---------eEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK---------QLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~---------~ig~v 80 (321)
+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. .++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999987 56999999999999999999999999999999999999999999999886431 23333
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
|| +++.+++.. .++++.+||+|||||++|||||+.+|+++|||||
T Consensus 79 ~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 79 PQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred HH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33 556667754 5778999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 160 TSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
|+|||+.++..+.+.|.+++++ |.|+|++||+++++.. ||++++|++|+++..
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999765 8999999999999966 999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=329.70 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=163.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----CeEEEEcC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----KQLGFMPQ 82 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----~~ig~v~Q 82 (321)
||+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. +.++|++|
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 5899999999976 44554 9999999999999999999999999999999999999999998653 45899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
++.+++.+|+.||+.+....++ ..+.+..+++.+++.. .++++.+||+|||||++||||++.+|+++||||||+
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9888888999999987654332 1245566778888864 688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
|||+.++..+++++++..++|.|+|++||++++++.||.+
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999987767799999999999999888765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=375.31 Aligned_cols=207 Identities=22% Similarity=0.370 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.+||+++|+++ . +|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 266 ~~~l~~~~l~~---~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 266 APVLTVEDLTG---E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CceEEEeCCCC---C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 35899999983 1 59999999999999999999999999999999999999999999988642 3
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHHHHH--H-hCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICYYGL--I-YGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~~~~--~-~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++|+||++ .+++.+|+.+|+..... . ........++.++++++.+++. . .++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 58888999999864211 1 1111222345577888999985 3 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. |||+++|++|+++..++++++.
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999998789999999999999977 9999999999999999887664
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=375.55 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC-
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS- 85 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~- 85 (321)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++. +++||+||++.
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~ 393 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAY 393 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccc
Confidence 58999999999987 56999999999999999999999999999999999999999999999874 57999999974
Q ss_pred -CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 86 -LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 86 -l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
+++.+|+.+|+.+.. ... ..++++..+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 394 ~~~~~~t~~~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 394 DFENDLTLFDWMSQWR---QEG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred cCCCCCcHHHHHHHhc---cCC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 667799999986421 111 1234567788888884 36899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
||+.++..+++.|+++ +.|||++|||++++.. |||+++|++|+++ ..|+++++.+
T Consensus 469 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 469 MDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999876 3599999999999977 9999999999998 7888887654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=378.19 Aligned_cols=208 Identities=25% Similarity=0.324 Sum_probs=173.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+++.|.++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.+. ++|+
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 49999999765432 56999999999999999999999999999999999999 9999999999753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||||++.+|+. |++||+.++. ...++++..+.++ +.++.+ |++. .......||||||||++|||||+++
T Consensus 427 ~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 427 WVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred EecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999998752 1233333333222 112222 2221 2344567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999999999999999999999998875 58999999999999988999999999999999999998754
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=384.50 Aligned_cols=209 Identities=29% Similarity=0.405 Sum_probs=184.2
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--ccEEEECCccc-----CeEEEEcC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN--GGNIHLSITSK-----KQLGFMPQ 82 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~--~G~I~~~g~~~-----~~ig~v~Q 82 (321)
..+|++++|++ +.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|++. +++||++|
T Consensus 70 ~~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q 147 (659)
T PLN03211 70 KISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQ 147 (659)
T ss_pred ccccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECc
Confidence 45677888877 66999999999999999999999999999999999999885 89999999753 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-c-----cCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 83 QISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-F-----KRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~-----~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++.+++.+||+||+.+.+... ..+.++.+++++++++.+++.+ . ++.+++||||||||++||+||+.+|++
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 999999999999999876443 1234445566788899999864 2 345788999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-HHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-EAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.. ||++++|++|++++.|+++++..
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999999878999999999998 4655 99999999999999999998865
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=324.41 Aligned_cols=162 Identities=32% Similarity=0.493 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++...+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 478999999987322699999999999999999999999999999999999999999999998642 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+||++.+++ .|+.||+ ||+|||||++|||||+.+|+++|||||
T Consensus 81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998876 5998886 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 160 TSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|+|||+.++..++++++++++ ++|||++||++++++.||++++|++|+
T Consensus 124 ~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 124 TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999864 799999999999996699999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=335.84 Aligned_cols=189 Identities=28% Similarity=0.408 Sum_probs=163.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCC--CCCHHHHHHHHHHH--
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYP--EFTIDEMICYYGLI-- 102 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~--~ltv~e~l~~~~~~-- 102 (321)
|+|++||++||+||||||||||+++|+|+.+|++|+|.++|++. ++++|+||++.+++ .+|+.||+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999753 57999999987643 47999999764221
Q ss_pred --hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy106 103 --YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 103 --~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~ 179 (321)
.........+++..+++.+++.. .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11111223455778889999865 678899999999999999999999999999999999999999999999999998
Q ss_pred hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 180 ~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++|+|+|++||+++++.. ||+++++ +|++++.|+++++.+
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 779999999999999976 9999999 899999999988754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=374.12 Aligned_cols=210 Identities=27% Similarity=0.396 Sum_probs=177.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.++++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 5999999999975435699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.+... ..+.++..+. .++.++.+ +++. .+....+||||||||++|||||+++
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred EecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999985421 1233332222 12333333 3332 3556788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++||||||++||+.+++++.+.+.++.++|+|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999998767899999999999887799999999999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=380.11 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=175.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 5999999999976445699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ...++++. .++++..++ +. ......+||||||||++||||
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i----~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART-EQYSREQI----EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC-CCCCHHHH----HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 11233332 233333332 11 223346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+...+.+.|.++. +++|+|++||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 47999999999999888999999999999999999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=386.90 Aligned_cols=210 Identities=30% Similarity=0.443 Sum_probs=178.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+. ++||
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 4999999999998655799999999999999999999999999999999999999999999999874 7899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||+|++.+|.. |++||+.+... ..+.++..+.+. +....+ |.+. .......||||||||++|||||+++
T Consensus 551 ~V~Q~~~Lf~g-SI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 551 YVLQDPFLFSG-SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EEcccchhhcC-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999998875 99999987532 122233222211 111111 1111 2345567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||.+..++.||||++|++|+|+++|+.+++.+.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999875 57999999999999999999999999999999999999764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=372.11 Aligned_cols=207 Identities=23% Similarity=0.364 Sum_probs=176.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
.++|+++|+++.| +.+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+. +
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4589999999974 3489999999999999999999999999999999999999999999988543 2
Q ss_pred eEEEEcCCC---CCCCCCCHHHHHHH-----HHHHhCC-CHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI---SLYPEFTIDEMICY-----YGLIYGM-SLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA 144 (321)
.+||+||++ .+|+++|+.+|..+ ....++. .....++.+..+++.+++. . .++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 389999985 47888888877422 1111121 2233345667788888884 3 6899999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
|||+.+|++|||||||+|||+.+++.++++|.+++++|.|||++|||++++.. |||+++|++|+++..++.+
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999998889999999999999976 9999999999999877654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=385.11 Aligned_cols=204 Identities=23% Similarity=0.356 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999986446799999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.++.. ..+.++.. ++++..++ +. .......||||||||++||||
T Consensus 557 ~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~----~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 557 MVDQDIFLFEG-TVRDNLTLWDP--TIPDADLV----RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred EEecCChhhhc-cHHHHhhCCCC--CCCHHHHH----HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12333322 23333222 21 234456799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+++.+.|++ .++|+|++||+++.+..||||++|++|++++.|+.+++.+.
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999875 48999999999999988999999999999999999998753
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=352.84 Aligned_cols=182 Identities=34% Similarity=0.518 Sum_probs=164.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 41 llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
|+||||||||||+|+|+|+++|++|+|.++|++. +++||+||++.+|+.+|+.||+.+....++.+..+.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999999999999999998653 469999999999999999999998765555444555567
Q ss_pred HHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCC
Q psy106 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHY 191 (321)
Q Consensus 114 ~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~ 191 (321)
++++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.|+++++ .|+|+|++|||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 788899999975 6889999999999999999999999999999999999999999999999999875 49999999999
Q ss_pred hhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 192 IDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 192 l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
++++.. |||+++|++|+++..|+++++.+..
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999976 9999999999999999999987654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=378.24 Aligned_cols=213 Identities=24% Similarity=0.371 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+||+++|++++|+++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|++.++|.+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 589999999999642 14599999999999999999999999999999999999999999999998652
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||+|||||++|||||+.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 369999999999999999999987654444444455567788889999875 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+++||||||+|||+.+++.+.+++++++++|+|++++||+++.++.|||+++|++|++++.|++++..
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999987799999999999988779999999999999999998764
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=319.92 Aligned_cols=163 Identities=28% Similarity=0.364 Sum_probs=148.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ++++|+||++.++
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~- 76 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP- 76 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-
Confidence 4789999999642 46999999999999999999999999999999999999999999999875 6799999998765
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
.+|+.||+.+. ++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 77 ~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~ 127 (166)
T cd03223 77 LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127 (166)
T ss_pred cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHH
Confidence 57999998642 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
+.+.++++++ +.|+|++||+++....||++++|+++
T Consensus 128 ~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 128 DRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999876 58999999999876669999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=318.48 Aligned_cols=151 Identities=26% Similarity=0.480 Sum_probs=139.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------CeEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ig 78 (321)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999987 5699999999999999999999999999999999999999999999987542 2355
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|+|| ||+|||||++|||||+.+|+++||||
T Consensus 79 ~~~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 79 MVYQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred EEEe--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 5555 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
||+|||+.+++.+++.|++++++|.|||++||+++++.. ||++++|++|++++
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999998779999999999999876 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=377.63 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=178.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 5999999999976434699999999999999999999999999999999999999999999999763 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc----------CCCCccChHHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK----------RKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~----------~~~~~LSgGqkQRv~iA~aL 147 (321)
|+||++.+|+. |++||+.+... ..+. +.+.++++..++++ .+ .....||||||||++|||||
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP--NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC--ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999875 99999987531 1222 33445555555532 11 24567999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++|+++|||||||+||+.+++.+.+.+.++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999999999999999999999998875 58999999999999988999999999999999999988754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=374.62 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=176.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 49999999999753 4699999999999999999999999999999999999999999999999753 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++. ..++++ +.++++..++. . .......||||||||++||||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR---DISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC---CCCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999987 9999998753 223333 33344444332 1 223456799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988754 6999999999999988999999999999999999998754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=330.71 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=158.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------Ce
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------KQ 76 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~~ 76 (321)
.+.|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999854 5699999999999999999999999999999999999999999999987531 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc------------cccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN------------HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~------------~~~~~~~~LSgGqkQRv~iA 144 (321)
++|+||++.++ +.|+.||+.+... ....+ ....++.+++. ..++++.+||||||||++||
T Consensus 81 i~~~~q~~~~~-~~t~~~nl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 81 VAYAAQKPWLL-NATVEENITFGSP---FNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEEcCCCccc-cccHHHHHhhcCc---CCHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999887 5799999976431 11111 11222333321 13467899999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWN--HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~--ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
|||+.+|+++||||||+|||+.++..+++ +++.++++|.|+|++||+++++..||++++|++|.
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999999999998 66666667899999999999987799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=364.92 Aligned_cols=209 Identities=31% Similarity=0.414 Sum_probs=176.3
Q ss_pred eEEE--EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 8 AIRV--ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 8 ~I~v--~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
-+++ +|+++.|++++ ++++|+||++++|+.++|+||||||||||+++|+|+.+|++|+|.+||.+. ++
T Consensus 318 ~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 318 PIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred CceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3555 49999999874 799999999999999999999999999999999999999999999998763 68
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcCCc-cccCCC----CccChHHHHHHHHHHHHhc
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLHLN-HFKRKC----GSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~l~-~~~~~~----~~LSgGqkQRv~iA~aL~~ 149 (321)
++||+|+|.+|+. |++||+.++.. ..++++..+.++. +.+...-+ .+|..+ ..|||||+|||++||||++
T Consensus 397 i~~v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 397 ISWVSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eeeeCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999986 99999987532 1233333333221 22222211 134334 4599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++++|+||||++||.++.+.+.+.|.++++ ++|++++||++..+..||+|++|++|++++.|.++++.++
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999976 4999999999999999999999999999999999998654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=383.51 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=176.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999975445699999999999999999999999999999999999999999999999753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+. |++||+.+... ..+.++.. ++++..++ +. .......||||||||++||||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~----~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP--YADDEEIL----RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC--CCCHHHHH----HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12333322 22333222 11 234456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++|||||||+||+.+.+++.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998875 47999999999999988999999999999999999998654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=337.28 Aligned_cols=192 Identities=27% Similarity=0.376 Sum_probs=172.2
Q ss_pred cceEEEEeEEEEeCCCC-------CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE
Q psy106 6 KCAIRVENAYKRHSSKL-------PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~-------~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig 78 (321)
.++++++|++|.|..+. ..+++||||+|++||++||+|+||||||||-|+|+||++|++|+|.++|.+...+.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 46799999999996431 37999999999999999999999999999999999999999999999998743222
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
..+..+++.++++.+++.. +++++++|||||+||++|||||+.+|+++++
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~ 133 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVA 133 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEe
Confidence 2344567888999999853 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccc
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMK 225 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~ 225 (321)
|||+|+||...+.++.+++.++++ .|.|.+++|||+..++. |||+++|..|+|++.|+.++++.+...+
T Consensus 134 DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 134 DEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred cCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 999999999999999999999984 59999999999999988 9999999999999999999998765433
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=340.25 Aligned_cols=217 Identities=29% Similarity=0.439 Sum_probs=195.8
Q ss_pred ceEEEEeEEEEeCCC-------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 7 CAIRVENAYKRHSSK-------------------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~-------------------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
.|+.++|++|.|... ...++.|+||+|++|+++|++|||||||||++|+|+|++.|++|.|
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 368889999887421 1248999999999999999999999999999999999999999999
Q ss_pred EECCccc--------CeEEEEc-CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHH
Q psy106 68 HLSITSK--------KQLGFMP-QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQ 137 (321)
Q Consensus 68 ~~~g~~~--------~~ig~v~-Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGq 137 (321)
.++|.++ +++++|+ |...+++++.+.|-+......|..+.++.+++.+.+.+.++++. ++.+++.||-||
T Consensus 82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq 161 (325)
T COG4586 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ 161 (325)
T ss_pred EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence 9999865 4688776 55678888888888887778888999999999999999999975 788999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
|.|+.||.||+++|++|+|||||-|||..++..+.+.+++.+ +++.||+++||+++.+.. ||||+.|++|+++++|+.
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 999999999999999999999999999999999999999998 569999999999999987 999999999999999999
Q ss_pred hHHHhhcc
Q psy106 216 KVLLEKYN 223 (321)
Q Consensus 216 ~~l~~~~~ 223 (321)
+++..++.
T Consensus 242 ~~l~~~f~ 249 (325)
T COG4586 242 AQLQEQFG 249 (325)
T ss_pred HHHHHHhC
Confidence 99987654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=372.78 Aligned_cols=208 Identities=29% Similarity=0.383 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++|++++|+++ +++|+|+||++++||.+||+|||||||||+++.|+|+++|++|+|.+||.+. ++|+|
T Consensus 329 I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 329 IEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 8999999999842 5799999999999999999999999999999999999999999999998764 68999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL-----QALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l-----l~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
|||++.+|. -|++||+.++..- .++++..+.++.+ .+.+ +++. .......||||||||++||||++++|
T Consensus 408 V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999998 5999999876321 2344444433222 2222 2221 23445689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++||||||+||+.+.+.+.+.+.++. +|+|+++++|.++.+..||+|++|++|++++.|+.+++.++
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999876 57899999999999999999999999999999999999865
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=369.85 Aligned_cols=206 Identities=26% Similarity=0.318 Sum_probs=176.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.+||+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++||+||++
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~q~~~ 397 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--VKLAYVDQSRD 397 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEeCchh
Confidence 358999999999987 56999999999999999999999999999999999999999999998532 3699999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++.+|+.||+.+.....+.... ......+++.+++. . .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred hcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 788899999999875433222211 12344578888885 2 5889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-CEEE-EecChhHHHh
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-GILL-EESPPKVLLE 220 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-G~i~-~~g~~~~l~~ 220 (321)
||+.++..++++|+++. | |||++|||++++.. ||++++|++ |++. ..|+.++..+
T Consensus 476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 476 LDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999998873 4 89999999999977 999999996 7876 4777776543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=367.52 Aligned_cols=206 Identities=25% Similarity=0.369 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK---------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~---------- 74 (321)
.++|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|.++|++.
T Consensus 258 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 468999999999987 5699999999999999999999999999999999998876 799999987531
Q ss_pred CeEEEEcCCCCCCC--CCCHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHH
Q psy106 75 KQLGFMPQQISLYP--EFTIDEMICYYGL----IYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~--~ltv~e~l~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~a 146 (321)
+++||+||++.++. ..++.+++.+... .+.......+++++++++.+++.. .++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 45999999976543 3467666543211 111111223456778889999864 588899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecCChhHHh-h-cCEEEEEeCCEEEEec
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTHYIDEAK-K-SHMIGLMRKGILLEES 213 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH~l~~~~-~-~drv~il~~G~i~~~g 213 (321)
|+.+|++|||||||+|||+.+++.++++|++++++| .|||++|||++++. . ||++++|++|++++..
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999998765 57999999999995 3 8999999999988764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=338.21 Aligned_cols=202 Identities=25% Similarity=0.294 Sum_probs=165.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.+.|+++|+++. + +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|+||++.
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~ 108 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSW 108 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCccc
Confidence 357999999985 3 4599999999999999999999999999999999999999999999987 4999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHcCC--c-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALLHL--N-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l--~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+++. |+.||+.+.... ......+. +...++.+.. . ..++++.+||+|||||++|||||+.+|+++|||
T Consensus 109 l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD 184 (282)
T cd03291 109 IMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184 (282)
T ss_pred cccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8875 999999764211 11111111 1111111111 0 123456899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 158 EPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||+|||+.++..+.+.+ .+++ ++.|||++||+++++..||++++|++|+++..|+++++.+
T Consensus 185 EPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 185 SPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999865 4554 5799999999999987799999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=368.40 Aligned_cols=205 Identities=26% Similarity=0.317 Sum_probs=175.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.+||+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++. .+|||+||++
T Consensus 320 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--~~i~~v~q~~~ 395 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--VKLAYVDQSRD 395 (552)
T ss_pred CeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc--eEEEEEeCCcc
Confidence 468999999999987 56999999999999999999999999999999999999999999998542 3699999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++.+|+.||+.+....++.... ......+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 396 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 396 ALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred ccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 488889999999875432222211 123446788888853 5889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC-CEEE-EecChhHHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK-GILL-EESPPKVLL 219 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~-G~i~-~~g~~~~l~ 219 (321)
||+.++..++++|+++. + |||++|||++++.. ||++++|++ |++. ..|+.++..
T Consensus 474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 474 LDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred CCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 99999999999999873 4 89999999999987 999999997 5776 557765543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=379.61 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=171.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. .+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 59999999999753 25699999999999999999999999999999999999999999999999763 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+|+||++.+|+ .|++||+.++.. ..++++ +.++++..++ +. ......+||||||||++|||
T Consensus 558 ~~v~Q~~~lF~-gTIreNI~~g~~--~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 558 ALVGQEPVLFS-GSVRENIAYGLT--DTPDEE----IMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred eEEecCccccc-cCHHHHHhcCCC--CCCHHH----HHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 99999999987 499999987531 122322 2233333332 11 23345679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|+++|||||||+||+.+.+.+.+ . . ..+++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~-~-~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-S-R-SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-h-h-ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 9999999999999999999999999988 2 2 2368999999999999988999999999999999999998754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=367.98 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=174.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 59999999999753 4599999999999999999999999999999999999999999999998653 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.++. ...++++..+..+ +.++.+ +++. .......||||||||++|||||+++
T Consensus 413 ~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 413 VVFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999975 9999998742 1223333222211 111111 1221 2334557999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+++.++.||++++|++|++++.|+.+++...
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999998874 47999999999999888999999999999999999988654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=379.20 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 473 ~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 49999999999743 5699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||||++.+|+. |++||+.++.. ...+.++..+.++ +.++.+ +++. .......||||||||++|||||+++
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999999976 99999987521 1223333222221 111111 1121 2345567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.+.+.+.+.|+++ +|+|+|++||+++.++.||++++|++|++++.|+.+++.++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999875 47999999999999988999999999999999999998754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=332.24 Aligned_cols=189 Identities=22% Similarity=0.332 Sum_probs=159.4
Q ss_pred ceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 24 YVLDKLCMTVQ-----KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 24 ~iL~~isl~i~-----~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+.+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +++|+||++.+++.+|+.||+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHHH
Confidence 36777777776 79999999999999999999999999999999999875 69999999987778999999875
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
....... . .....++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++|++
T Consensus 85 ~~~~~~~-~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 85 ITKDFYT-H---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred Hhhhccc-c---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4322211 1 123456778888865 6889999999999999999999999999999999999999999999999999
Q ss_pred HHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEE--EecChhHHH
Q psy106 178 LAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILL--EESPPKVLL 219 (321)
Q Consensus 178 l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~--~~g~~~~l~ 219 (321)
+++ .|+|||++|||++++.. ||++++|+++..+ ..++|..+.
T Consensus 161 ~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 161 FAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 875 58999999999999986 9999999765433 345555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=369.34 Aligned_cols=207 Identities=28% Similarity=0.372 Sum_probs=175.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|++++|++..+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 4999999999975335699999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ...+.+ ++.++++..+++. +| .....||||||||++||||
T Consensus 410 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 410 LVSQDVVLFND-TIANNIAYGRT-EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred EEccCcccccc-cHHHHHhcCCC-CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999998875 99999986521 012232 2333444443311 12 2345799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++|++++||||||+||+.+.+.+++.|.++. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 999999999999999999999999999998874 57999999999999888999999999999999999998653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=338.18 Aligned_cols=200 Identities=29% Similarity=0.453 Sum_probs=178.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------cCeEEE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------------KKQLGF 79 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------------~~~ig~ 79 (321)
|+.+++|+ --=+++|+.+.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|.- .++|||
T Consensus 5 ~~~~~lG~----~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGY 80 (352)
T COG4148 5 NFRQRLGN----FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80 (352)
T ss_pred ehhhhcCc----eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeee
Confidence 44556665 2347899999878999999999999999999999999999999998853 178999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|||+..+||++||+.|+.|+.... .....+.+.+++++++ ++++|.+|||||||||||+|||+.+|++|+|||
T Consensus 81 VFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 81 VFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence 999999999999999999875432 2344567788899987 799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|.++||...+++++-.+.++.+ -+.-|+.+||.++|+.+ ||++++|++|++.+.|+.+++....
T Consensus 155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999999999999999985 48899999999999988 9999999999999999999998654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=366.72 Aligned_cols=206 Identities=24% Similarity=0.355 Sum_probs=175.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+.+|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4899999999975435699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-----------Ccc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----------LNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-----------l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ..+.++.. .+++..+ ++. .+.....||||||||++||||
T Consensus 393 ~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~----~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 393 VVSQTPFLFSD-TVANNIALGRP--DATQQEIE----HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred EEccCCeeccc-cHHHHHhcCCC--CCCHHHHH----HHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 12232222 2222222 221 235567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++||||||++||+.+++.+++.|+++. +|+|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999998875 68999999999999888999999999999999999988754
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=366.76 Aligned_cols=209 Identities=21% Similarity=0.310 Sum_probs=176.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +.++
T Consensus 334 ~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 59999999999753 3589999999999999999999999999999999999999999999998653 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH-----HHHH--cCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY-----LQAL--LHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----ll~~--~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+++ .|++||+.++.. ..+.++..+..+. .+.. .+++. .......||||||||++|||||+++
T Consensus 413 ~v~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 413 TVFQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999886 599999987521 1233333222211 1111 12332 3456788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999998874 58999999999999988999999999999999999988654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=367.70 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=174.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|++++|++ . .|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|.++ .++||+||++.
T Consensus 338 ~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~ 410 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIK 410 (590)
T ss_pred ceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEeccccc
Confidence 468999999999976 3 5999999999999999999999999999999999999999999986 36999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++++||.||+.+....+. . .....++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 411 ~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 411 PDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred CCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 8889999999986532221 1 124567888889865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 165 PVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
+.++..++++|+++++ .|+|||++|||++++.. |||+++|++ ++...|+.
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999975 58999999999999977 999999964 77777663
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=323.57 Aligned_cols=187 Identities=20% Similarity=0.243 Sum_probs=158.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-ECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|. +++... .+.+.+.+++.+|+.||+.+....+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----~~~~~~~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----PLGANSFILPGLTGEENARMMASLY 77 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----ccccccccCCcCcHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999997 666432 2345677889999999999877666
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy106 104 GMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g 182 (321)
+....+.. ..+.+..+++. .++++++||+|||||++|||||+.+|+++||||||+++|+.+++.+++.+.+..+ +
T Consensus 78 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~ 153 (213)
T PRK15177 78 GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q 153 (213)
T ss_pred CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C
Confidence 55433322 23334556654 5788999999999999999999999999999999999999999999998865433 4
Q ss_pred ceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 183 RTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 183 ~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
.|+|++||+++++.. ||++++|++|++++.++.++..
T Consensus 154 ~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 154 KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 689999999999976 9999999999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=373.26 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=176.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|++..+.+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 5999999999975435699999999999999999999999999999999999999999999999763 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.+... ..+.++..+.. .+.++.+ +++. .......||||||||++|||||+++
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred EEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998874 99999986421 12233322221 1122222 2322 3445678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+++++.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 99999999999999999999999999874 58999999999999988999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=363.77 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=174.2
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|+... +.+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 599999999997522 4699999999999999999999999999999999999999999999998652 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
+|+||++.+|+. |++||+.++.. ..+.+ .+.++++..++ +. .......||||||||++|||
T Consensus 417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 417 ALVPQDPVLFAA-SVMENIRYGRP--DATDE----EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred eEEccCCccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHH
Confidence 999999998875 99999986421 11222 22233333332 21 23445679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|+++|||||||+||+.+++.+++.++++. +++|+|++||+++.+..||+++.|++|++++.|+++++.++
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 9999999999999999999999999999999875 58999999999999888999999999999999999887653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=366.33 Aligned_cols=211 Identities=28% Similarity=0.402 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++||++.|+.. ..++|+|+||+|++||++||+||||+||||+.++|..++.|++|+|.+||.+. ++|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 49999999999864 25699999999999999999999999999999999999999999999999874 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHc-CCcc-----ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QALL-HLNH-----FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|+|-|+|.+|.. |+.||+.|+.. ..+.+++.+.++.+ -++. ++++ ...+..+||||||||+||||||++
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 999999999975 99999998765 44444444333221 1111 1221 245667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhc
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||.+|||||.||+||.++...+.+.|.++.+ ++|||++.|.+..++.||+|+++++|++++.|+-++++++.
T Consensus 622 ~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred CCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 9999999999999999999999999988764 59999999999999999999999999999999999998753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=367.63 Aligned_cols=201 Identities=20% Similarity=0.334 Sum_probs=174.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++|+++|+++.|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||+||+.
T Consensus 310 ~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~ 385 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQL 385 (638)
T ss_pred CceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcch
Confidence 458999999999987 66999999999999999999999999999999999999999999998642 4799999975
Q ss_pred -CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 85 -SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 85 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+.+..|+.+++.. .. .....+.+..+++.+++. ..++++++|||||||||+||+||+.+|++|||||||+
T Consensus 386 ~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 386 EFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred hhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35566778776532 11 112235567788899985 3688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLL 219 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~ 219 (321)
|||+.++..+.++|.++ .| |||++|||++++.. |||+++|++|+++ +.|+.++..
T Consensus 460 ~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 460 HLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999887 34 99999999999987 9999999999997 789988874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=356.38 Aligned_cols=206 Identities=28% Similarity=0.422 Sum_probs=179.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.++++|++++|++++.++|+|+||++++||-++|+|++|||||||+++|+|.++|++|+|.++|.+. +.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 6899999999998777899999999999999999999999999999999999999999999998653 4799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
+++|.+.+|.. |+++|+.+... ..++ +.+.++++.+++++ .+.....||||||||++|||+
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP--DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC--CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 99999999976 99999986421 2233 33334455555422 234457899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|.+++||||||.||||.+.+++++++.+-. +|+|+|++||++..+++||||++|++|+++++|+.+++..+
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 999999999999999999999999999998765 48999999999999999999999999999999999998763
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=337.17 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=196.1
Q ss_pred cceEEEEeEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--
Q psy106 6 KCAIRVENAYKRHSSK---------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~---------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-- 74 (321)
.+.++.+++.+.|.-+ ...+++++||++.+||.+||+|.||||||||=++|.++++++ |+|.+.|.+.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4579999999998421 145899999999999999999999999999999999999876 9999998763
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIYG--MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQ 138 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqk 138 (321)
+++-.||||| ++-|.|||.+.+.-+...+. .+..+..+++.++++.+|++. .+++|+++|||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 5789999998 58899999999988777664 566777888889999999975 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~ 216 (321)
||+|||||++.+|++++||||||+||...+.++.++++++. +.|.+-+++|||+..+.. ||+|++|++|+|++.|+.+
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~ 512 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHH
Confidence 99999999999999999999999999999999999999997 569999999999999987 9999999999999999999
Q ss_pred HHHhhcc
Q psy106 217 VLLEKYN 223 (321)
Q Consensus 217 ~l~~~~~ 223 (321)
++++++.
T Consensus 513 ~if~~P~ 519 (534)
T COG4172 513 AVFANPQ 519 (534)
T ss_pred HHhcCCC
Confidence 9987654
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=380.29 Aligned_cols=216 Identities=31% Similarity=0.519 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------Ce
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~~ 76 (321)
..+.++|++|.|+.... |++++||.|++||++|++|||||||||+++||+|..+|++|++.++|.+. +.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999998432 99999999999999999999999999999999999999999999987654 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+||.||+..+++.+|.+|++.++++.+|.+..+.++.++.+++.+++.+ .+++++.||||||+|+++|.|++.+|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999998888888999999999964 789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+|+||.+|+.+|+++.+++++|+.||++||.++|++. |||+++|.+|++.+.|+++++++++.
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 999999999999999999999999888899999999999998 99999999999999999999987653
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=377.94 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=176.0
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|+... .++|+++||+|++|+.++|+|||||||||++++|.+++.|++|+|.++|.+. .+|
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence 489999999998753 4799999999999999999999999999999999999999999999999874 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|.|.|+|.+|. .|++||+.|+.. +...++..+.. .+....+ +.+- ...+--+||||||||+||||||++
T Consensus 430 glV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 430 GLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred Ceeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 99999998875 699999987531 11223322222 1111111 1111 223445699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+++++.+.+.|.+. .+|+|.|+++|++..++.||++++|++|+|++.|+.+|+...
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 99999999999999999999999999775 468999999999999999999999999999999999999875
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=349.93 Aligned_cols=203 Identities=28% Similarity=0.358 Sum_probs=177.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|+++.|+.+ +++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|+++|.+. +-||
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 49999999999974 459999999999999999999999999999999999999 899999999874 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||+..+|++ |+..|+.++... .+. +.+.+..+..++++ ...+...|||||||||+||||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~s--as~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNPS--ASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCCC--cCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 99999999987 999999875321 122 23333445555422 234566899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+++||+++++|||||+||.++.+++++.+.+ ...|+|+|++-|+++.+..||+|+++++|++.+.|+.++++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999988 456899999999999999999999999999999999999876
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=335.49 Aligned_cols=220 Identities=25% Similarity=0.352 Sum_probs=195.7
Q ss_pred CcceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CccEEEECCccc---
Q psy106 5 DKCAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-----NGGNIHLSITSK--- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~--- 74 (321)
.++.++++|+++.|+ ++...++++|||+|.+||.+||+|.||||||-+.+.++||++. -+|+|.++|.+.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 356899999999996 3336799999999999999999999999999999999999864 378999999763
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcCCcc----ccCCCCccChHH
Q psy106 75 ----------KQLGFMPQQI--SLYPEFTIDEMICYYGLIY-GMSLQQIKEKAEYLQALLHLNH----FKRKCGSLSGGQ 137 (321)
Q Consensus 75 ----------~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LSgGq 137 (321)
.+|+++||+| ++.|-.|+...+.-..+.+ +.+..+.++++.++++.+++.+ ++.+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 4899999998 4777788887776655554 5677888899999999999953 478999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecCh
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPP 215 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~ 215 (321)
||||.||+||+++|++||.||||++||...+.+++++|++++ +.|++++++|||+..+.+ ||||++|.+|++++.|+.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 999999999999999999999999999999999999999998 569999999999999987 999999999999999999
Q ss_pred hHHHhhccc
Q psy106 216 KVLLEKYNM 224 (321)
Q Consensus 216 ~~l~~~~~~ 224 (321)
++++..+..
T Consensus 243 ~~lF~~PqH 251 (534)
T COG4172 243 ETLFAAPQH 251 (534)
T ss_pred HHHhhCCCC
Confidence 999876543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=362.42 Aligned_cols=204 Identities=24% Similarity=0.268 Sum_probs=174.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++|+++|+++.|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.. -+|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~~i~y~~q~~~ 392 (635)
T PRK11147 317 KIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-LEVAYFDQHRA 392 (635)
T ss_pred CceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-cEEEEEeCccc
Confidence 458999999999987 66999999999999999999999999999999999999999999998 433 3699999986
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+++++||.||+.+........ .....+..+++.+++. . .++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred ccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 5889999999997643211111 1124466778888874 3 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe-CCEEEE-ecChhHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR-KGILLE-ESPPKVL 218 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~-~G~i~~-~g~~~~l 218 (321)
||+.++..+.++++++ +.|||++|||++++.. ||++++|+ +|++.. .|+.++.
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999776 4599999999999977 99999998 899865 5666665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=360.80 Aligned_cols=204 Identities=24% Similarity=0.288 Sum_probs=169.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
||+++||+|+|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||++|++..+
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--~~i~~~~q~~~~~ 76 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--WQLAWVNQETPAL 76 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCC
Confidence 5899999999998 67999999999999999999999999999999999999999999999875 3599999975433
Q ss_pred CCCCHHHHHHHHH-----------------------HHhC----CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHH
Q psy106 88 PEFTIDEMICYYG-----------------------LIYG----MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQ 138 (321)
Q Consensus 88 ~~ltv~e~l~~~~-----------------------~~~~----~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqk 138 (321)
..++.+++.-.. ...+ ....+.+.++..+++.+++. ..++++.+||||||
T Consensus 77 -~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 77 -PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred -CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 246655443110 0000 00112335677888999985 36889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChh
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPK 216 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~ 216 (321)
|||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|++. +.|+.+
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHH
Confidence 9999999999999999999999999999999999998765 5699999999999977 9999999999996 467776
Q ss_pred HHH
Q psy106 217 VLL 219 (321)
Q Consensus 217 ~l~ 219 (321)
...
T Consensus 233 ~~~ 235 (638)
T PRK10636 233 SFE 235 (638)
T ss_pred HHH
Confidence 654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=314.82 Aligned_cols=212 Identities=24% Similarity=0.382 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEeCCC----------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q psy106 7 CAIRVENAYKRHSSK----------------------LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~----------------------~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~ 64 (321)
++|+++||+|.|.-. ...+|+||||++++||.+||+|+||||||||+|+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 568889998877321 1359999999999999999999999999999999999999999
Q ss_pred cEEEECCcccCeEEEEcC-CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHH
Q psy106 65 GNIHLSITSKKQLGFMPQ-QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 65 G~I~~~g~~~~~ig~v~Q-~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~ 142 (321)
|+|.++|+ ++++.. ...+.|++|++||+.+.+.+.+++.++.+++++++.++-+|.. .++|++++|.||+-|++
T Consensus 82 G~v~v~G~----v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLa 157 (249)
T COG1134 82 GKVKVTGK----VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLA 157 (249)
T ss_pred ceEEEcce----EehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHH
Confidence 99999876 454443 3467889999999999999999999999999999999999876 79999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|.|...+|++||+||-.+--|+.-+++-.+.+.++.++++|||++|||++.+.+ |||+++|++|++...|+++++...
T Consensus 158 Fsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 158 FSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999998888999999999999987 999999999999999999988754
Q ss_pred c
Q psy106 222 Y 222 (321)
Q Consensus 222 ~ 222 (321)
+
T Consensus 238 Y 238 (249)
T COG1134 238 Y 238 (249)
T ss_pred H
Confidence 3
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=360.55 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=177.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+. +.+||+||++.+++.+||+
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence 66999999999999999999999999999999999999885 79999999763 5799999999999999999
Q ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC------ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 94 EMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG------SLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 94 e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~------~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
||+.|.+.... .+.++.+++++++++.+++.+ .|.+++ .|||||||||+||+||+.+|++++|||||+||
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence 99998776542 234555667889999999865 566665 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChh-HH-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYID-EA-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~-~~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+.++..+++.+++++++|+|||+++|++. ++ +.||++++|++|++++.|+++++.+
T Consensus 198 D~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999878999999999996 55 4599999999999999999998854
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=383.98 Aligned_cols=211 Identities=27% Similarity=0.352 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCccEEEECCccc-----Ce
Q psy106 7 CAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV---LNGGNIHLSITSK-----KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~---p~~G~I~~~g~~~-----~~ 76 (321)
.+++++||++.|+ ++.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.++|.+. ++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999995 222579999999999999999999999999999999999997 7899999999753 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC----ccChHHHHHHHHHHHHh
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG----SLSGGQQRRVSLAITLL 148 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~----~LSgGqkQRv~iA~aL~ 148 (321)
+||+||++.+++.+||+||+.+.+.++. .+.++..++++++++.+++.+ .|+.++ .|||||||||+||+||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 9999999988999999999998776542 334455567888999999865 677776 79999999999999999
Q ss_pred cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH--hhcCEEEEEeCC-EEEEecChhH
Q psy106 149 HDPE-LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA--KKSHMIGLMRKG-ILLEESPPKV 217 (321)
Q Consensus 149 ~~P~-lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~--~~~drv~il~~G-~i~~~g~~~~ 217 (321)
.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++||+++.. +.||++++|++| ++++.|++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9997 9999999999999999999999999988899999999999974 459999999997 9999999743
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=357.56 Aligned_cols=206 Identities=23% Similarity=0.308 Sum_probs=170.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
+||+++|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..++|++|.+..
T Consensus 2 ~~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~ 77 (635)
T PRK11147 2 SLISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPR 77 (635)
T ss_pred cEEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCC
Confidence 47999999999988 67999999999999999999999999999999999999999999999863 357899987643
Q ss_pred CCCCCHHHHHHHH------------------------------HHHh----CCCHHHHHHHHHHHHHHcCCccccCCCCc
Q psy106 87 YPEFTIDEMICYY------------------------------GLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCGS 132 (321)
Q Consensus 87 ~~~ltv~e~l~~~------------------------------~~~~----~~~~~~~~~~~~~ll~~~~l~~~~~~~~~ 132 (321)
....++.+++... .... .....+...++..+++.+++. .++++.+
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~ 156 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSS 156 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhh
Confidence 3334666654210 0000 000112235567788888886 4788999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 133 LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||++|||.+++.. ||++++|++|+++.
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998873 599999999999977 99999999999974
Q ss_pred -ecChhHHHh
Q psy106 212 -ESPPKVLLE 220 (321)
Q Consensus 212 -~g~~~~l~~ 220 (321)
.|+.++...
T Consensus 234 ~~g~~~~~~~ 243 (635)
T PRK11147 234 YPGNYDQYLL 243 (635)
T ss_pred ecCCHHHHHH
Confidence 588776543
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=296.76 Aligned_cols=143 Identities=31% Similarity=0.454 Sum_probs=135.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ..++|+||
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~------ 70 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ------ 70 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc------
Confidence 478999999987 56999999999999999999999999999999999999999999999885 57999998
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus 71 --------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 71 --------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred --------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 169 EEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 169 ~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
..+.+.++++ +.|++++||+++++.. ||++++|++|+
T Consensus 107 ~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 107 EALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999876 4799999999999976 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=309.32 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC-ccc----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI-TSK----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g-~~~----------~ 75 (321)
+.++++|++++|++ ..+|+|+||++.+||.-+|+|||||||||++..|+|..+|+.|+++++| .+. .
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 57899999999999 7799999999999999999999999999999999999999999999988 332 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGL--------IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
.||--||.|..|+++||+||+.+... +......+.+++++++++..++.+ .++.+..||.||||++.|++.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 68899999999999999999987532 222222344568899999999975 688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++|++|+||||++|+-.....+.-+++++++. +.+|+++.|||.+++. |++|-+|+.|.+.++|+.+++..+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999999999999974 5899999999999987 999999999999999999998765
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=353.04 Aligned_cols=189 Identities=29% Similarity=0.358 Sum_probs=160.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.+. +++|
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 5999999999986444699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+ .|++||+.++.. ..+++ .+.++++..++. . ......+||||||||++||||
T Consensus 400 ~v~Q~~~lf~-~ti~~Ni~~~~~--~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQHPFLFA-GTIAENIRLARP--DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcCCCcccC-cCHHHHHhccCC--CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999999987 499999987531 12222 223333333331 1 234557899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
|+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||+++.+..||++++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999998875 589999999999999889999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=323.39 Aligned_cols=193 Identities=23% Similarity=0.322 Sum_probs=164.0
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc------
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------ 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------ 74 (321)
.|++|+|+++ +.+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|+ ++|.+.
T Consensus 4 ~~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999763 25999999 4999999999999999999999999999999999996 556432
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 -----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.+++|+||+..+++. ++.+++.... .....++.+.++++.+++.. .++++.+||+|||||++|||||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 137899999888874 7778776532 12223456678888999865 68889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEec
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEES 213 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g 213 (321)
.+|+++||||||++||+.++..+.++|++++++|+|||++||+++++.. ||++++|+ |++.+.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999998778999999999999986 99999995 5565533
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=306.90 Aligned_cols=196 Identities=22% Similarity=0.341 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
++++++.+.-++ .++|+++||++.+||+.+|.||||||||||+|+++-|++|++|++++.|++. ++|+|
T Consensus 4 le~kq~~y~a~~--a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 4 LELKQVGYLAGD--AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred hHHHHHHhhcCC--CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 566666655566 6799999999999999999999999999999999999999999999999874 68999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
+-|.|.+|++ ||+||+.|+...++... .++++..+++.+++++ +++++.+||||||||++|+|-|..-|++|+||
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999987 99999999877664322 2456677889999875 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||+||+.+++.+-++|..+. ++..+++.+|||.+++-+ +|+++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999999886 779999999999999755 999999999876
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.57 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=164.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+. ++++
T Consensus 322 ~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 59999999999753 4699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-cc---C--CCCccChHHHHHHHHHHHHhcCCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FK---R--KCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~---~--~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
|+||++.+|+. |+++| . . ...++.+.+.++.+++.. .+ . ...+||||||||++||||++++|+
T Consensus 401 ~v~q~~~lf~~-ti~~n---~-----~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPE---G-----K--PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred EEecChhHHHH-hhccc---c-----C--chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988875 77776 1 0 111234555666666643 21 1 135899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++|||||||+||+.+++.+++.+.+.. +.|+|+|++||+++.+..||++++|++|++++..
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999987664 4589999999999888889999999999998763
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=386.12 Aligned_cols=205 Identities=24% Similarity=0.322 Sum_probs=176.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.+.+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 4999999999965435699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||+|.+|+. |++||+.++. ..++++. .++++..++ +. ......+||||||||++||||
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~---~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS---EHNDADL----WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC---CCCHHHH----HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999986 9999997542 2233332 233333332 21 234456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+++.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|++++.|++++++++
T Consensus 1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998864 58999999999999999999999999999999999999764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=352.89 Aligned_cols=195 Identities=22% Similarity=0.336 Sum_probs=165.1
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 59999999999753 13599999999999999999999999999999999999999999999998753 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccC------CCCccChHHHHHHHHHHHHh
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKR------KCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~------~~~~LSgGqkQRv~iA~aL~ 148 (321)
+++|++|++.+|+. |+++|.. .+..++.+.++++..+++. .++ ...+||||||||++||||++
T Consensus 417 ~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 417 LFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred hCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 69999999998875 7777731 1112344556777777653 221 23679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~-~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
.+|+++||||||++||+.+++.+.+.+. .++.+|+|+|++||+++.++.||+|++|++|++++.
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998664 455678999999999998888999999999999764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=383.21 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=174.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL------------------------ 62 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p------------------------ 62 (321)
.|+++||+++|++. ..++|+|+||+|++|+.+||+|||||||||++++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 49999999999742 24699999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 63 ------------------------------NGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 63 ------------------------------~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
++|+|.++|.+. ++||||||+|.+|+ .|++||+.++..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-- 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-- 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--
Confidence 699999999764 57999999999996 699999998621
Q ss_pred CCCHHHHHHHHHHHHHHcCC-------cc-cc----CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 104 GMSLQQIKEKAEYLQALLHL-------NH-FK----RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l-------~~-~~----~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
..+.++..+ +++..++ +. .+ .....||||||||++|||||+++|++||||||||+||+.+.+.+
T Consensus 1322 ~at~eeI~~----A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1322 DATREDVKR----ACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred CCCHHHHHH----HHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 223333332 3333222 21 23 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCceEEEecCChhHHhhcCEEEEEeC----CEEE-EecChhHHHh
Q psy106 172 WNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRK----GILL-EESPPKVLLE 220 (321)
Q Consensus 172 ~~ll~~l~-~~g~tIil~tH~l~~~~~~drv~il~~----G~i~-~~g~~~~l~~ 220 (321)
.+.|.++. .+++|+|++||.++.++.||+|++|++ |+++ +.|+.+++++
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999886 468999999999999999999999999 9955 8999999875
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=317.06 Aligned_cols=207 Identities=31% Similarity=0.459 Sum_probs=179.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
+++|+++|++.+|++ +++|+|+|++|++||-.+|+||||||||||+++++|..+|++|.+.+.|+.. +
T Consensus 29 ~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 29 EPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred cceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 367999999999999 7799999999999999999999999999999999999999999999877642 6
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHH--HH--HhC-CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 76 QLGFMPQQI--SLYPEFTIDEMICYY--GL--IYG-MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 76 ~ig~v~Q~~--~l~~~ltv~e~l~~~--~~--~~~-~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+||||.... .+.++.+++|.+.-+ .. .|. ...++..+++..+++.+++.+ .+++..+||-||||||.|||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL 186 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL 186 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH
Confidence 799997543 455667888866422 11 122 223455677888999999976 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES--GRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~--g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
+.+|++|||||||+|||..+++.+.+.+.++... +.++|+|||+.+++.. .++++.+++|++++.|.
T Consensus 187 v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999743 7899999999999977 69999999999998773
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=385.29 Aligned_cols=205 Identities=25% Similarity=0.323 Sum_probs=177.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 5999999999975434699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
+|||+|.+|+. |++||+.++. ..++++ +.++++..++ +. .......||||||||++||||
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~---~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN---EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC---CCCHHH----HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999986 9999997542 223333 2333333332 21 233446899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|+|++.|++++++++
T Consensus 1389 LLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998874 58999999999999999999999999999999999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=354.65 Aligned_cols=201 Identities=19% Similarity=0.293 Sum_probs=168.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++|+++|+++.|+++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .+|||+||++.
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~ 582 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHV 582 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEecccc
Confidence 3689999999999642 45999999999999999999999999999999999999999999998753 47999999862
Q ss_pred CCCCCCHHHHHHHHH-HHh-CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 LYPEFTIDEMICYYG-LIY-GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 l~~~ltv~e~l~~~~-~~~-~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+.+++.++..+.. ..+ +.. .+.+..+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 583 --~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 583 --DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred --ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3455655543221 111 211 245667888899862 578999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVL 218 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l 218 (321)
|||+.++..+.+.+.+. +| |||++|||++++.. ||++++|++|+++ +.|++++.
T Consensus 657 ~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 657 HLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999998887664 34 99999999999987 9999999999998 67877664
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=381.92 Aligned_cols=199 Identities=23% Similarity=0.364 Sum_probs=165.0
Q ss_pred eEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC-Cccc---------Ce
Q psy106 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-ITSK---------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~-g~~~---------~~ 76 (321)
.|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+. ++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 589999999998532 369999999999999999999999999999999999999999999994 4432 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHH----------hCC---C-------------------------------------
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLI----------YGM---S------------------------------------- 106 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~----------~~~---~------------------------------------- 106 (321)
||||||++.+|+. |++||+.++... +.. .
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999974 999999885310 000 0
Q ss_pred -HHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy106 107 -LQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173 (321)
Q Consensus 107 -~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ 173 (321)
....++.+.++++..+++. .++...+||||||||++|||||+++|++||||||||+||+.++..+.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 0001123444555554421 245678999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 174 HLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 174 ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
.|+++++ +|+|+|++||+++.++.||+|++|++|
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999875 689999999999999779999999986
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=302.04 Aligned_cols=152 Identities=28% Similarity=0.382 Sum_probs=137.9
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT 91 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~lt 91 (321)
.|++|+|++ +.++++ +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|+||++.
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~i~~~~q~~~------ 71 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI---TPVYKPQYID------ 71 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE---EEEEEcccCC------
Confidence 589999998 668998 4999999999999999999999999999999999999999885 4899998653
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
||+|||||++|||||+.+|++++|||||++||+.+++.+
T Consensus 72 -----------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l 110 (177)
T cd03222 72 -----------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110 (177)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-ceEEEecCChhHHhh-cCEEEEEeCCEEEEe--cChh
Q psy106 172 WNHLLYLAESG-RTILITTHYIDEAKK-SHMIGLMRKGILLEE--SPPK 216 (321)
Q Consensus 172 ~~ll~~l~~~g-~tIil~tH~l~~~~~-~drv~il~~G~i~~~--g~~~ 216 (321)
.+.++++++++ .|||++||+++++.. ||++++|+++..+.+ |+|.
T Consensus 111 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999987664 999999999999986 999999998755433 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.32 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=176.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+.+...+|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.+. ++|+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 4999999999976434699999999999999999999999999999999999999999999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------cc-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------NH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |++||+..+. ..++++. .++++..++ +. .......||||||||++||||
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~---~~sdeei----~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFS---QYSDEEV----WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred EECCCCcccCc-cHHHHcCccc---CCCHHHH----HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999987 9999997322 2333332 333343332 21 223446799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+++.+.+.+.|++.. +++|+|+++|+++.+..||||++|++|+|++.|++++++++
T Consensus 1436 LLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998764 57999999999999999999999999999999999999764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=372.56 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=181.3
Q ss_pred eEEEEeEEEEeCC-----------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc
Q psy106 8 AIRVENAYKRHSS-----------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~-----------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 74 (321)
.+..+||++..+. +.+.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 4899999988641 124699999999999999999999999999999999999763 689999998643
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-ccCCC-----CccChHHHH
Q psy106 75 ------KQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-FKRKC-----GSLSGGQQR 139 (321)
Q Consensus 75 ------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~~~~~-----~~LSgGqkQ 139 (321)
+.+||++|++.+++.+||+||+.+.+... ..+.++..+.++++++.+++.+ .++.+ +.|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 45899999999999999999999876543 1233444566888999999875 56665 589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-H-hhcCEEEEEeC-CEEEEecChh
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-A-KKSHMIGLMRK-GILLEESPPK 216 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~-~~~drv~il~~-G~i~~~g~~~ 216 (321)
||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++. + +.||++++|++ |++++.|++.
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999999999999999999999999999999999999998889999999999984 5 45999999996 8999999874
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=378.28 Aligned_cols=205 Identities=22% Similarity=0.342 Sum_probs=176.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++||+++|+++.+.+|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 4999999999976545699999999999999999999999999999999999999999999999763 6799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |++|||..+. ..+++ .+.++++..++.+ +| ....+||||||||++||||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~---~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL---EASSA----EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc---CCCHH----HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 99999999986 9999996421 22333 3334444444321 23 3345799999999999999
Q ss_pred HhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHD-PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~-P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++ |++||||||||+||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|+|++.|+++++.++
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9996 99999999999999999999999998764 47999999999999999999999999999999999999753
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=346.36 Aligned_cols=176 Identities=27% Similarity=0.388 Sum_probs=148.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
.|+++|++++|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+. ++|||
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 59999999999764 3599999999999999999999999999999999999999999999999764 48999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------cc----CCCCccChHHHHHHHHHHHH
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FK----RKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~----~~~~~LSgGqkQRv~iA~aL 147 (321)
|||++.+|+. |++||+.++.. ..++++ +.++++..++++ .| .....||||||||++|||||
T Consensus 413 V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 413 FAQDAHLFDT-TVRDNLRLGRP--DATDEE----LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred EccCcccccc-cHHHHHhccCC--CCCHHH----HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 9999999976 99999987521 122332 333444433321 22 33457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999998763 579999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=351.34 Aligned_cols=193 Identities=23% Similarity=0.322 Sum_probs=162.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++++|+||++.+
T Consensus 450 ~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--~~~i~~v~Q~~~l 526 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--KGKLFYVPQRPYM 526 (659)
T ss_pred CeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--CCcEEEECCCCCC
Confidence 469999999999643 4699999999999999999999999999999999999999999999865 3579999999998
Q ss_pred CCCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcCCcc-ccCC---------CCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 87 YPEFTIDEMICYYGLIYGMS-LQQIKEKAEYLQALLHLNH-FKRK---------CGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~-~~~~---------~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
++. |++||+.+........ ....++.+.++++.++++. .+++ ..+||||||||++|||||+++|+++|
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 9999998753221110 0011234556777777754 3332 37899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
|||||++||+.+++.+.+.+++ .|+|+|++||+++.++.||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999998865 48999999999999888999999973
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=295.93 Aligned_cols=218 Identities=21% Similarity=0.299 Sum_probs=193.0
Q ss_pred cceEEEEeEEEEeCC-------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----
Q psy106 6 KCAIRVENAYKRHSS-------KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-------~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---- 74 (321)
++.++++|++|.|.. +...+++.|||++++|+..|++|.||||||||.|||+|.++|++|+|.++|...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999998742 235699999999999999999999999999999999999999999999998753
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS--LYPEFTIDEMICYYGLIYG-MSLQQIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 -----~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA 144 (321)
++|-++||+|+ +-|.+.+.+.+..+.++.. ...++..+++.+.+.++|+- +.+-++..||-|||||||+|
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA 161 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence 68999999985 6777888888877776643 44556667788889999983 46788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|||+.+|+++|.||..++||...+.++.++..++. +.|.+-|.++.++..+.. +|.|++|++|++++.|++.+++..+
T Consensus 162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999999999999999999999999998 459999999999999987 9999999999999999999998765
Q ss_pred c
Q psy106 223 N 223 (321)
Q Consensus 223 ~ 223 (321)
.
T Consensus 242 ~ 242 (267)
T COG4167 242 L 242 (267)
T ss_pred c
Confidence 4
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=359.04 Aligned_cols=208 Identities=26% Similarity=0.426 Sum_probs=179.2
Q ss_pred EEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 9 IRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 9 I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
|+++||+++|+... .++|+|+||+|++|+.+||+|||||||||.+.+|-.++.|++|.|.+||.+. +++|
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 89999999998532 5699999999999999999999999999999999999999999999999874 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHH-cCCcc-cc----CCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QAL-LHLNH-FK----RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~-~~l~~-~~----~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.|.|+|.||+ -|++||+.|+ ....+..++.+.++.+ -++ ..++. .| .+..+||||||||+|||||+++|
T Consensus 1068 lVsQEP~LF~-~TIrENI~YG--~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYG--SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eeccCchhhc-ccHHHHHhcc--CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 9999999997 5999999987 2124555444433221 111 12332 33 45569999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|++|||||.||+||.++.+.+.+.|.+.. .|+|.|++.|.+..++.||.|+++++|+|++.|+-+++.+
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999998864 6899999999999999999999999999999999999976
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=367.19 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=175.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++||+++|+...+.+|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.++|.+. ++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 599999999997544679999999999999999999999999999999999997 799999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--------ccC----CCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--------FKR----KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--------~~~----~~~~LSgGqkQRv~iA~a 146 (321)
|+||+|.+|+. |+++||.... ..++ +.+..+++..++.. ++. ....||||||||++||||
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~---~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE---QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc---CCCH----HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 99999999986 9999996432 1222 33444555554421 222 234799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|+++|++||||||||+||+.+.+.+.+.|++.. +++|||++||.++.+..||+|++|++|+|++.|+|+++++
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999998864 4799999999999998999999999999999999999975
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=327.64 Aligned_cols=211 Identities=26% Similarity=0.413 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
-.+.++++++.-++.++++++++||++++||.+||+||||||||||.|+|.|..+|.+|.|++||.+. ++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 36999999998777768899999999999999999999999999999999999999999999999764 689
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHcCCcc-ccCC----CCccChHHHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALLHLNH-FKRK----CGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~~-~~~~----~~~LSgGqkQRv~iA~aL 147 (321)
||+||+..+|+. |+.||+.-+.. ..+.+.+-+. +.++.-. ++. .|.. -..||||||||++|||||
T Consensus 413 GYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred CcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 999999999987 99999964321 1112211111 2222222 222 3333 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhc
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
-.+|.+++||||-|+||......+.+.|.+.+++|.|+|++||.+..+..+|+|.+|++|++...|+.+|++.+.
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988653
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=283.02 Aligned_cols=146 Identities=40% Similarity=0.634 Sum_probs=136.0
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMP 81 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~ 81 (321)
++|+++.|++ +.+++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|... +.++|+|
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 6899999987 5699999999999999999999999999999999999999999999988642 4577777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
| ||+||+||++||||++.+|++++|||||+
T Consensus 80 q--------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 80 Q--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred e--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 7 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
|||+.++..+.+.++++++++.|++++||+++++.. ||++++|++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999987668999999999999988 89999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=289.16 Aligned_cols=151 Identities=26% Similarity=0.340 Sum_probs=132.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+++|+|+||++++|++++|+||||||||||+|++. +++|++.+++... .+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 67999999999999999999999999999999986 3799999876531 24777766
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
.++++.+++.. .++++.+||+|||||++|||||+.+ |+++||||||++||+.+++.+.+.
T Consensus 68 ----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 68 ----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred ----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12456677753 5788999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+++++++|.|||++||++++++.||++++|++|+.
T Consensus 132 l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 132 IKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99988789999999999999867999999977654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=339.57 Aligned_cols=183 Identities=25% Similarity=0.361 Sum_probs=158.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc-------
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------- 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------- 74 (321)
+++++||.+ ..+|++++ ++++|+++||+||||||||||+|+|+|+++|++|+|. ++|.+.
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 489999862 35999999 9999999999999999999999999999999999997 777542
Q ss_pred ----CeEEEEcCCCCCCCCC---CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHH
Q psy106 75 ----KQLGFMPQQISLYPEF---TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~l---tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
.++++.+|....++.+ ||.|++... +..++++++++.+++.. .++++.+|||||||||+||+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 2467777765544433 999988631 12356777888899875 689999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
|+.+|++|||||||++||+..+..+++.|+++++ |+|||++|||++++.. ||++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 9999999999999987 9999999863
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=362.49 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=171.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC----CCCccEEEECCccc--------CeEEEEcCCCCCCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN----VLNGGNIHLSITSK--------KQLGFMPQQISLYPEF 90 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~----~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~~~l 90 (321)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+. +.++|++|++.+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 45999999999999999999999999999999999986 57899999998642 3599999999999999
Q ss_pred CHHHHHHHHHHHhC-------CCHHHHHHH-HHHHHHHcCCcc-ccC-----CCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 91 TIDEMICYYGLIYG-------MSLQQIKEK-AEYLQALLHLNH-FKR-----KCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 91 tv~e~l~~~~~~~~-------~~~~~~~~~-~~~ll~~~~l~~-~~~-----~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+|++.|.+.... .+.++..++ .+.+++.+++.+ .++ .++.|||||||||+||+||+.+|++++|
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 99999998765431 223332233 466788899865 444 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCCh-hHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYI-DEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l-~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||||+|||+.++.++++.|+++++ .|+|||+++|++ +++.. ||++++|++|++++.|+++++..
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 999999999999999999999986 599999999997 56655 99999999999999999988753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=330.85 Aligned_cols=206 Identities=27% Similarity=0.325 Sum_probs=173.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|+++.|++ +.+|+|+||++.+|+.+||+|+||||||||||+|+|...|++|+|...+. .++||++|++.+
T Consensus 2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~ 77 (530)
T COG0488 2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPL 77 (530)
T ss_pred ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCc
Confidence 57999999999988 77999999999999999999999999999999999999999999987643 479999999999
Q ss_pred CCCCCHHHHHHHHHHH-hCC-----------------------------CHHHHHHHHHHHHHHcCCccccCCCCccChH
Q psy106 87 YPEFTIDEMICYYGLI-YGM-----------------------------SLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~-~~~-----------------------------~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG 136 (321)
++..||.+.+...... +.. ...+.+.++..++.-+++...++++++||||
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 9999999987643211 000 0011224455566666665458899999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE-ecC
Q psy106 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE-ESP 214 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~-~g~ 214 (321)
||.||+||+||+.+|++|||||||+.||..+...+-+.|++. +| |+|+||||-+++.. |++|+-++.|++.. .|.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 999999999999999999999999999999999999999754 46 99999999999988 99999999998754 566
Q ss_pred hhHHH
Q psy106 215 PKVLL 219 (321)
Q Consensus 215 ~~~l~ 219 (321)
-+...
T Consensus 235 y~~~~ 239 (530)
T COG0488 235 YSSYL 239 (530)
T ss_pred HHHHH
Confidence 55543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=288.96 Aligned_cols=213 Identities=24% Similarity=0.335 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCccEEEECCccc----------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNGGNIHLSITSK---------- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~G~I~~~g~~~---------- 74 (321)
.|++++||+.+-.++ +.+|+++||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|++.
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 579999999999873 36999999999999999999999999999999999985 78999999999874
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcCCcc--ccCCCC-ccChHHHHHHHHHHHHh
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMS---LQQIKEKAEYLQALLHLNH--FKRKCG-SLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~ll~~~~l~~--~~~~~~-~LSgGqkQRv~iA~aL~ 148 (321)
..|...||.|.=+|..++.+.|.......... ..+..+.+++.++.++++. ++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 45888999999999999999987654432111 2355677788888899875 688885 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+|++.|||||-||||..+-+.+.+.+.+++++|.+++++||+-+.+.+ .|++.+|-+|+|+.+|.+ ++...
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 9999999999999999999999999999999999999999999999987 699999999999999999 56543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=365.29 Aligned_cols=206 Identities=25% Similarity=0.409 Sum_probs=172.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
.|+++|+++.|++..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|||+||++.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCcccc
Confidence 6999999999975335699999999999999999999999999999999999999999999986 599999999887
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcCC-c-----cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLHL-N-----HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~l-~-----~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+ .|++||+.++... ..+..++..+. +.+.++. + ..+.+..+||||||||++||||+..+|+++|||||
T Consensus 712 ~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 712 N-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred C-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5 6999999875321 22222221111 1122211 1 13567889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH--hCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLA--ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~--~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+||+...+.+++.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 99999999999999887542 358999999999999988999999999999999999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=290.58 Aligned_cols=209 Identities=27% Similarity=0.383 Sum_probs=174.6
Q ss_pred eEEEEeEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------C
Q psy106 8 AIRVENAYKRHSSKL---PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~---~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~ 75 (321)
|++++|+++.|.++. +++|+++|++|++|+|+-++|.||||||||+++|+|-++|++|.|.++|.+. .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 578899998886543 6799999999999999999999999999999999999999999999999764 3
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHHHHH---hCCCH---HHHHHHHHHHHHHcCC--cc-ccCCCCccChHHHHHHHHH
Q psy106 76 QLGFMPQQI--SLYPEFTIDEMICYYGLI---YGMSL---QQIKEKAEYLQALLHL--NH-FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 76 ~ig~v~Q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~ll~~~~l--~~-~~~~~~~LSgGqkQRv~iA 144 (321)
.++-|||+| ..++.||+.||+.+.... ++... ...++...+.++..++ +. ++.+++-|||||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 477899998 479999999999875433 12221 1122223334444443 33 6789999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHh-hcCEEEEEeCCEEEEecChh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAK-KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~-~~drv~il~~G~i~~~g~~~ 216 (321)
+|-++.|++|+|||-|++|||.+...++++=.++. +.+.|.+|+||+++.+- +.+|.++|++|+|+.+-+-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 99999999999999999999999999999999987 45889999999999985 48999999999999875443
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=333.50 Aligned_cols=213 Identities=32% Similarity=0.468 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CccEEEECCccc------C
Q psy106 8 AIRVENAYKRHSSK---LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL---NGGNIHLSITSK------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~---~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p---~~G~I~~~g~~~------~ 75 (321)
-+..+|++..-.++ .+.+|+|||.++++||+.||+||+||||||||++|+|-... .+|+|.+||+.. +
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 36788888877554 36799999999999999999999999999999999999864 689999999543 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCC-----ccChHHHHHHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCG-----SLSGGQQRRVSLAIT 146 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~-----~LSgGqkQRv~iA~a 146 (321)
.+|||.|+..+++.+||+|++.|.+.+.- .+.++.+++++++++.+++.. .|..++ .+||||||||+||.-
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 79999999999999999999999887642 355778889999999999975 566665 599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-H-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-A-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|++||.+|+|||||||||..++.++.+.|++++++|+|||++-|.+.- + +..|++++|.+|++++.|+++++.+
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999999999999999889999999999974 4 4599999999999999999987754
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=282.01 Aligned_cols=214 Identities=25% Similarity=0.400 Sum_probs=179.8
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---c------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---K------ 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~------ 74 (321)
.++|.++++++||.|+. ...++|+||++.+||+.||+|++|||||||++||++-+.|++|+|.+...+ .
T Consensus 2 ~~~PLL~V~~lsk~Yg~--~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 2 MDKPLLSVSGLSKLYGP--GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCCcceeehhhhhhhCC--CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 45679999999999998 559999999999999999999999999999999999999999999985321 1
Q ss_pred ---------CeEEEEcCCCC--CCCCCCHHHHH----H-HHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChH
Q psy106 75 ---------KQLGFMPQQIS--LYPEFTIDEMI----C-YYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGG 136 (321)
Q Consensus 75 ---------~~ig~v~Q~~~--l~~~ltv~e~l----~-~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgG 136 (321)
..=|+|-|+|. +-...|...|+ . .+.+.|+ .+++.+...++.+.++. .|..+.++|||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchH
Confidence 23699999984 32222333333 2 2333343 34556667888888764 57889999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 137 QQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||||+.|||-|+..|+++++||||.|||...+.+++++++.+. +-|.+++++|||+..+.- +||..+|++|++++.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 9999999999999999999999999999999999999999997 559999999999999987 99999999999999999
Q ss_pred hhHHHhhcc
Q psy106 215 PKVLLEKYN 223 (321)
Q Consensus 215 ~~~l~~~~~ 223 (321)
.+.++.++.
T Consensus 236 TDrvLDDP~ 244 (258)
T COG4107 236 TDRVLDDPH 244 (258)
T ss_pred ccccccCCC
Confidence 988876543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=358.94 Aligned_cols=198 Identities=22% Similarity=0.295 Sum_probs=172.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
+.+|+|+|+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|.+. +.++|++|++.+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56999999999999999999999999999999999999998 99999998753 5699999999999999999
Q ss_pred HHHHHHHHHhCC----------CHHHH------------------------HHHHHHHHHHcCCcc-c-----cCCCCcc
Q psy106 94 EMICYYGLIYGM----------SLQQI------------------------KEKAEYLQALLHLNH-F-----KRKCGSL 133 (321)
Q Consensus 94 e~l~~~~~~~~~----------~~~~~------------------------~~~~~~ll~~~~l~~-~-----~~~~~~L 133 (321)
|++.|.+...+. ...+. +..++.+++.+++++ . ++.++.|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 999997765421 11110 012466888889864 2 5667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCCh-hHHhh-cCEEEEEeCCEEE
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYI-DEAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l-~~~~~-~drv~il~~G~i~ 210 (321)
||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|+|+++|++ +++.. ||++++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999999999975 599999999997 46655 9999999999999
Q ss_pred EecChhHHHh
Q psy106 211 EESPPKVLLE 220 (321)
Q Consensus 211 ~~g~~~~l~~ 220 (321)
+.|+++++..
T Consensus 418 y~G~~~~~~~ 427 (1470)
T PLN03140 418 YQGPRDHILE 427 (1470)
T ss_pred EeCCHHHHHH
Confidence 9999998864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=358.38 Aligned_cols=202 Identities=22% Similarity=0.341 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.|+++|++++|+.. .+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.. ...+|+|++|+|.+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---IRGSVAYVPQVSWI 690 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---ecCcEEEEcCcccc
Confidence 59999999999742 256999999999999999999999999999999999999999986642 23579999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-----ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-----FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-----~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++. |++||+.|+.. .+.++. .++++..++ +. ...+..+||||||||++||||+.++|+++
T Consensus 691 f~g-TIreNI~fg~~---~~~e~~----~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 691 FNA-TVRENILFGSD---FESERY----WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred ccc-cHHHHhhcCCc---cCHHHH----HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 975 99999998642 223222 223332222 11 22345579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNH-LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~l-l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||+.+.+.+++. +... .+|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999988764 5443 368999999999999888999999999999999999998753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=354.39 Aligned_cols=188 Identities=28% Similarity=0.373 Sum_probs=157.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|+||++.+++. |++||+.|+...
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~-Ti~eNI~~g~~~- 513 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG-TIKDNIIFGLSY- 513 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCc-cHHHHHHhcccc-
Confidence 589999999999999999999999999999999999999999999987 59999999999875 999999976421
Q ss_pred CCCHHHHHHHH-----HHHHHHcCCc---cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-
Q psy106 104 GMSLQQIKEKA-----EYLQALLHLN---HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH- 174 (321)
Q Consensus 104 ~~~~~~~~~~~-----~~ll~~~~l~---~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l- 174 (321)
.....++.. ...++.+... ....+..+||||||||++||||++.+|+++||||||++||+..++.+++.
T Consensus 514 --~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 514 --DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred --chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 111111111 1122222111 13456789999999999999999999999999999999999999999984
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.++. +|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 592 l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 592 LCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 56654 5899999999999998899999999999999999998864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=339.49 Aligned_cols=198 Identities=21% Similarity=0.233 Sum_probs=153.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCccEEEECCcccCeEEEEcC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN---VLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
..+|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|. |++|
T Consensus 175 ~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~----------~~~Q 242 (718)
T PLN03073 175 IKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL----------HVEQ 242 (718)
T ss_pred ceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE----------EEec
Confidence 357999999999987 56999999999999999999999999999999999964 45666654 4444
Q ss_pred CCCCCCCCCHHHHHH---------------HHHH-----------------HhCCCH-------------------HHHH
Q psy106 83 QISLYPEFTIDEMIC---------------YYGL-----------------IYGMSL-------------------QQIK 111 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~---------------~~~~-----------------~~~~~~-------------------~~~~ 111 (321)
+.. ..+.|+.+.+. +... ..+.+. ...+
T Consensus 243 ~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVV-GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 432 12233322210 0000 000011 1223
Q ss_pred HHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEec
Q psy106 112 EKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189 (321)
Q Consensus 112 ~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t 189 (321)
.++..++..+++. . .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivs 398 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVS 398 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEE
Confidence 4556677777774 2 57889999999999999999999999999999999999999999999999876 68999999
Q ss_pred CChhHHhh-cCEEEEEeCCEEE-EecChhHHH
Q psy106 190 HYIDEAKK-SHMIGLMRKGILL-EESPPKVLL 219 (321)
Q Consensus 190 H~l~~~~~-~drv~il~~G~i~-~~g~~~~l~ 219 (321)
||++++.. ||++++|++|++. +.|+.++..
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999977 9999999999996 677776554
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=357.98 Aligned_cols=201 Identities=22% Similarity=0.377 Sum_probs=168.3
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCcccCeEEEEcCCCC
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|+++|++++|+.. .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+. .+|+|++|+|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~----~~Iayv~Q~p~ 689 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR----GTVAYVPQVSW 689 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc----CeEEEEcCccc
Confidence 59999999999742 2569999999999999999999999999999999999999999 999875 46999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-----ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-----FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-----~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++. |++||+.|+... +.+ +.+++++..++ +. ...+..+||||||||++||||+.++|++
T Consensus 690 Lfng-TIreNI~fg~~~---d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 690 IFNA-TVRDNILFGSPF---DPE----RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred cCCC-CHHHHHhCCCcc---cHH----HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 9875 999999986421 222 23333333332 11 2344567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWN-HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~-ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|||||||+||+...+.+++ .+..+. +|+|+|++||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 99999999999999888765 555443 58999999999999888999999999999999999998653
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=282.92 Aligned_cols=188 Identities=21% Similarity=0.330 Sum_probs=135.7
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHHcCC--------CCCc----cEEEECC--cc-cCeEEEEcCCCC-
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL-SCITGQN--------VLNG----GNIHLSI--TS-KKQLGFMPQQIS- 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl-~~l~Gl~--------~p~~----G~I~~~g--~~-~~~ig~v~Q~~~- 85 (321)
..+|+++||+|++||++||+||||||||||+ ..+...- +|.. |.+.... .. ....++.+|++.
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTT 87 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCC
Confidence 5699999999999999999999999999996 3332100 0000 0010000 00 012344555443
Q ss_pred -CCCCCCHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEEEEe
Q psy106 86 -LYPEFTIDE---MICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELLILD 157 (321)
Q Consensus 86 -l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLD 157 (321)
+.+..++.. ...+....+. .....++ .+.++.+++.. .++++.+||||||||++|||||+.+| +++|||
T Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllD 164 (226)
T cd03270 88 SRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLD 164 (226)
T ss_pred CCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 234445432 2222221211 1122233 35678888863 58899999999999999999999998 599999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEec
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEES 213 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g 213 (321)
|||+|||+..+..+.+.|++++++|.|||++|||+++++.|||+++| ++|+|+++|
T Consensus 165 EPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 165 EPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999987899999999999998779999999 999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=276.06 Aligned_cols=185 Identities=25% Similarity=0.276 Sum_probs=163.7
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLG 78 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig 78 (321)
++++.+|++...+. ..++.++||++.+||++-|.||||||||||+|+|+|+.+|++|+|.+++... +.+-
T Consensus 1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~ 78 (209)
T COG4133 1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78 (209)
T ss_pred CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHH
Confidence 36788999998888 7799999999999999999999999999999999999999999999987643 3356
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
|+-..+.+-+.+|+.||+.|...+++... ...+.++++.+++.. .|.++++||-|||+||+|||-.+..+++.|||
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~---~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD 155 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN---AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc---hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec
Confidence 77777888899999999999988876411 245667888899865 68999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 158 EPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 158 EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
|||++||+.+...+-.++.+-+.+|-.||++||..-.+.
T Consensus 156 EP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999999988888889999999876553
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=310.32 Aligned_cols=209 Identities=26% Similarity=0.410 Sum_probs=177.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+++.|..+ +++|+||||++.+|+.+|++||+||||||++|++..+...++|.|.+||.+. +.||
T Consensus 537 ~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 48999999999765 6799999999999999999999999999999999999999999999999875 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HH-HHcCCcc-cc----CCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQ-ALLHLNH-FK----RKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll-~~~~l~~-~~----~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.||||..+|++ |+..|+.|.. . ..+.++..+.++. +- +.++.++ .+ .+.-+|||||||||||||+++++
T Consensus 616 VVPQDtvLFNd-TI~yNIryak-~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 616 VVPQDTVLFND-TILYNIRYAK-P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cccCcceeecc-eeeeheeecC-C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 99999999987 8999998742 1 2233343333221 11 2233332 23 34457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|.+++|||.||+||..+.+.+...+.++++ ++|-|++.|.+..+-.||.|.++++|+|++.|.-+++..+
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 999999999999999999999999999985 6788889999999999999999999999999999998765
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.90 Aligned_cols=191 Identities=24% Similarity=0.388 Sum_probs=157.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ++|||+||++.+++ .|++||+.++...
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~-~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMN-ATVRGNILFFDEE 747 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCC-CcHHHHHHcCChh
Confidence 569999999999999999999999999999999999999999999874 46999999998875 6999999875321
Q ss_pred hCCCHHHHHH-----HHHHHHHHc--CCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 103 YGMSLQQIKE-----KAEYLQALL--HLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 103 ~~~~~~~~~~-----~~~~ll~~~--~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
..+...+ ..+..++.+ ++. ..+++..+|||||||||+|||||+.+|+++||||||++||+..++.+++.
T Consensus 748 ---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 748 ---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred ---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 1111111 112223333 333 24678899999999999999999999999999999999999999988874
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+.....+|+|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 825 ~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 825 CFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 42222358999999999999988999999999999999999998653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=267.25 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=169.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc-------CeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------~~i 77 (321)
|+.++|++.+-++ ...|-++||+|.+||++-|+||+|||||||+.-+.|.+.++ +|++++++++. +++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred ceeeeeeeecCCC--ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 6889999999888 77999999999999999999999999999999999998875 79999998763 789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|++||++-+||.++|.+|+.|... ...+....++.+...++..+++. .++.+.+||||||-||++-|+|+..|+.++|
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp-~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALP-ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eeeecccccccccccccceEEecC-cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 999999999999999999987432 22233345566788899999976 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEecCChhHHhhcCEEEEE
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l-~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
|||+|.||..-+.++.+.+-.. .+.|...+++|||.+.+....||+-|
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999987554 46799999999999998855566543
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=263.30 Aligned_cols=199 Identities=22% Similarity=0.314 Sum_probs=177.4
Q ss_pred eEEEEeEEEEe-----CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------
Q psy106 8 AIRVENAYKRH-----SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS--------- 73 (321)
Q Consensus 8 ~I~v~nl~k~y-----~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~--------- 73 (321)
.|.++|++|+| ++-.-++++|+||+++.||++++=|||||||||++|+|-|-+.|++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 49999999998 2323579999999999999999999999999999999999999999999984221
Q ss_pred --------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHH
Q psy106 74 --------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 74 --------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~i 143 (321)
.+.||||.|.....|..+..|.++-+..-.+.+.+..+.++..++..++++. ++-.+.++||||||||.|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 1569999999888898898898887777788888888888999999999975 577899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
||.++.|-++|+|||||++||..+++.+.++|.+-+.+|.+++=+-||-+.=+. |||++-+..
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999988899999999999766566 999987753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=300.13 Aligned_cols=201 Identities=25% Similarity=0.323 Sum_probs=171.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC-
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI- 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~- 84 (321)
.++++++|+++.|+++ +.+++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+... -++||++|+.
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~ 395 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRD 395 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhh
Confidence 5689999999999764 57999999999999999999999999999999999999999999987533 5799999997
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSG 162 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsg 162 (321)
.+.++.|+.|++.-... .. .+..+...+..+++.. ..++++.||||||.|+.+|+.++.+|.+|||||||+.
T Consensus 396 ~l~~~~t~~d~l~~~~~--~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 396 ELDPDKTVLEELSEGFP--DG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred hcCccCcHHHHHHhhCc--cc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 44577799888763211 10 1355667888888853 5789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe-cChhHHH
Q psy106 163 IDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE-SPPKVLL 219 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~-g~~~~l~ 219 (321)
||..++..+.+.|.+. .-|||+||||..+++. |++++.+.+ ++... |..++..
T Consensus 470 LDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 470 LDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999775 4689999999999988 999999998 55544 6655543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=272.20 Aligned_cols=186 Identities=21% Similarity=0.303 Sum_probs=150.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH--------cC--CCCCcc-----------EEEECCccc--------
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT--------GQ--NVLNGG-----------NIHLSITSK-------- 74 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~--------Gl--~~p~~G-----------~I~~~g~~~-------- 74 (321)
.-|+|+|++|+.|.+++|.|+||||||||++.+. +. ..|..+ -|.++..+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998662 11 012211 233432211
Q ss_pred ---------------------------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--
Q psy106 75 ---------------------------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-- 125 (321)
Q Consensus 75 ---------------------------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-- 125 (321)
..+.|..++...+.+||+.|++.|+....+ .++..++++.+++..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence 124565666666678999999988765431 134556788889975
Q ss_pred ccCCCCccChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+++++.+||||||||++||+||+.+ |+++||||||+|||+..+..+++.|++++++|.|||++||++++++.||+++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5889999999999999999999996 7999999999999999999999999999888999999999999997899999
Q ss_pred EE------eCCEEEEecCh
Q psy106 203 LM------RKGILLEESPP 215 (321)
Q Consensus 203 il------~~G~i~~~g~~ 215 (321)
.| ++|++++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=284.98 Aligned_cols=209 Identities=26% Similarity=0.416 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.+.+.|+++.|... +++|+++||++++|+.++++||+|+||||++|++..++.+++|.|.++|.+. +-||
T Consensus 262 ~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 37899999999764 6799999999999999999999999999999999999999999999999874 5699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHcC-Ccc-ccC----CCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY--LQALLH-LNH-FKR----KCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~~~-l~~-~~~----~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
.|||+..+|++ |...|+.++..- ...++..+.++. .-.+.. +++ .+. +.-.|||||||||+|||+++.+
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 99999999976 888888875321 222332222221 111111 222 333 3447999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++|+|||.||+||....+++...|++.. .|.|-+++.|.+..+-.||.|++|++|+|++.|+-++++..
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 99999999999999999999999998875 68899999999999999999999999999999999998764
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=260.52 Aligned_cols=158 Identities=14% Similarity=0.190 Sum_probs=129.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---------cEEEECCcc------cCeEEEEcCCCCCCCCCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---------GNIHLSITS------KKQLGFMPQQISLYPEFT 91 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---------G~I~~~g~~------~~~ig~v~Q~~~l~~~lt 91 (321)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|.+ .+++||+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999987653 356555544 26899999999765
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHH
Q psy106 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~ 167 (321)
| +... .++++++++. .+..++++.+||+|||||++||++++ .+|++++|||||+|||+..
T Consensus 89 ------~-----~~~~---~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~ 152 (197)
T cd03278 89 ------Y-----SIIS---QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN 152 (197)
T ss_pred ------e-----eEEe---hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence 1 0000 1344455555 22357889999999999999999997 4679999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
+..+++.|+++++ +.|||++||++++++.||+++.|..
T Consensus 153 ~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 153 VERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999865 6899999999998877999998864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=309.90 Aligned_cols=204 Identities=24% Similarity=0.393 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
++.++++|.+++.+. ...+.|+||||+|++|+.+|++||-|||||+||.+|+|.++..+|++.++|. ++|+||.|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~p 591 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQP 591 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEecccc
Confidence 467999999999875 2245899999999999999999999999999999999999999999999986 99999999
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC------------ccccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------------NHFKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l------------~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
.+++. |++||+.|+..+ .+ ++.++.++.+.| .....+.-+||||||||++||||+-+++|
T Consensus 592 WI~ng-TvreNILFG~~~---d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 592 WIQNG-TVRENILFGSPY---DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred HhhCC-cHHHhhhcCccc---cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 98875 999999986432 12 222233333222 12346777999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++||.|+|++|....+.+++-.-...-+++|+|++||.++....||.|++|++|+|.+.|+.+++.+.
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 999999999999999888887544433468999999999999999999999999999999999999853
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=311.11 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=176.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++.+|..+...||+|+||+|++||-+||+|..|||||||+++|-++..|.+|+|.+||.+. ++++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 4999999999987667899999999999999999999999999999999999999999999999874 6899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-ccC----CCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-FKR----KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-~~~----~~~~LSgGqkQRv~iA~a 146 (321)
.+||||.+|.. |++.||.=+.. .++++.- ++++..++ +. +|. -..++|-||||.+|||||
T Consensus 1218 IIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW----~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG-TVRFNLDPFDE---YSDDEIW----EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred eeCCCCceecC-ccccccCcccc---cCHHHHH----HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 99999999987 99999862211 1232222 22232222 11 333 346799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++++|+|||.|+++|+++-..+.+.|++-- ++.|||.+-|.++.+..||||+||++|++++.|+|.+++++
T Consensus 1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred HhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 999999999999999999999999999998743 47999999999999999999999999999999999999875
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=240.73 Aligned_cols=123 Identities=33% Similarity=0.638 Sum_probs=107.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.+. +.++|++|++.+++.+|+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999998643 579999999999999999998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c----cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNH-F----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~----~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
...+.+.++++.+++.. . ++++.+||+|||||++||+||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12244556667666543 2 44559999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=276.35 Aligned_cols=207 Identities=29% Similarity=0.389 Sum_probs=178.7
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+.+.++++|++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++|++.
T Consensus 260 ~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 260 GEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred CCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 35678888887531 47999999999999999999999999999999999999999999999853
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHHHHH--h---CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHH
Q psy106 75 KQLGFMPQQI---SLYPEFTIDEMICYYGLI--Y---GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 75 ~~ig~v~Q~~---~l~~~ltv~e~l~~~~~~--~---~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA 144 (321)
..|+|||.|. .++..+++.+|+.+.... . -.+....++.++.+.+.+.+.. .++++.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 4699999874 688999999999876211 1 1333444456777788888753 5789999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
|.|..+|++|||||||-|+|..++.+++++|++++++|++||++|-+++|+.. ||||++|++|+++.+-+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999976 99999999999998655544
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=257.58 Aligned_cols=187 Identities=17% Similarity=0.255 Sum_probs=137.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------cCCCCCcc-------
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT----------------GQNVLNGG------- 65 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~----------------Gl~~p~~G------- 65 (321)
|+++|. |+|++ ..++++++ |++++|+||||||||||+++|+ +++.+++|
T Consensus 4 i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 455554 45776 55888887 8899999999999999999997 55666666
Q ss_pred -EEEECCcc------------cCeEEEEcCCCCCCC-CCCHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHcCCcc-ccC
Q psy106 66 -NIHLSITS------------KKQLGFMPQQISLYP-EFTIDEMICYYGLIYGMSLQQIKE--KAEYLQALLHLNH-FKR 128 (321)
Q Consensus 66 -~I~~~g~~------------~~~ig~v~Q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~~--~~~~ll~~~~l~~-~~~ 128 (321)
++.+++.+ .+++||+||+..+++ .+|..|+..+... .+........ ....+.+.+.+.. .++
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccc
Confidence 66665421 145899999888877 4677666554433 3433211000 0112223334432 567
Q ss_pred CCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++.+||||||||++|||||+. +|+++|+||||+||||.+++.+++.++++++ ++|||++||+.+..+.||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEE
Confidence 899999999999999999973 6899999999999999999999999999865 78899999986655559999988
Q ss_pred e
Q psy106 205 R 205 (321)
Q Consensus 205 ~ 205 (321)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=246.20 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.++.++|+...- -|-.+|.++..||++-++||||||||||+-.++|+. |-+|+|.++|.+. ++-
T Consensus 2 ~l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 2 ILMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred ceeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHH
Confidence 367888887642 367789999999999999999999999999999987 5699999999874 456
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------- 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------- 149 (321)
+|+.|+......|.|..++.+. .+.+.....+.++...+++++ +.|.+++|||||-|||-+|...++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP 149 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANP 149 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCc
Confidence 8999987766678898887653 233445556777778888865 789999999999999999998876
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
..++|++|||.++||...+..+..+|.+++.+|.+|||++||++-.-+ ||+++.++.|+++..|+.+++++.
T Consensus 150 ~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 150 AGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 447999999999999999999999999999999999999999998755 999999999999999999998753
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=259.72 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=139.1
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|+++|.. .|++ ..+++++++ +++||+||||||||||+++|.-..-.+ + .....+++++++|+..+++
T Consensus 6 l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~---~--~~~~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 6 LVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFR---A--SKMRQKKLSDLIHNSAGHP 72 (212)
T ss_pred EEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccC---H--HHhhhhhHHHHhcCCCCCC
Confidence 6777776 7887 669999988 899999999999999999997221100 0 1111256999999999999
Q ss_pred CCCHHHHHHHHHHH--------hCCCHHHHHH--HHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc----CCCE
Q psy106 89 EFTIDEMICYYGLI--------YGMSLQQIKE--KAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH----DPEL 153 (321)
Q Consensus 89 ~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~----~P~l 153 (321)
.+|+.+++.++... ++........ ...++.+.++++. .++++.+||+|||||++||+|++. +|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 99998877665432 2222111000 0134445566654 577889999999999999999974 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
++|||||+||||.++..+++.+++++ ++.|+|++||+.+..+.|||+++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999999999999999999999985 46789999999655556999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=245.26 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=135.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEEC--------CcccCeE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQ-KSTIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLS--------ITSKKQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~-~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~--------g~~~~~i 77 (321)
.|+++|+. +|.+ . ++++|+.. +|++++|+||||||||||+++|++. .-+..+....+ +.....|
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 47888988 6654 2 66777654 5999999999999999999999954 33333433321 1122579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------- 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------- 149 (321)
+++||++.-. .++..+ .+.+..+..+.+ .+...++.. .++++.+||+|||||++|||||+.
T Consensus 79 ~~~f~~~~~~--~~~~r~-------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~ 147 (213)
T cd03279 79 SFTFQLGGKK--YRVERS-------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNR 147 (213)
T ss_pred EEEEEECCeE--EEEEEe-------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhc
Confidence 9999887321 111111 133333222211 123333333 578899999999999999999985
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 150 ---DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 150 ---~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
+|+++||||||++||+..+..+.+.+++++++|.|||++||+++++.. ||++.++++|-
T Consensus 148 ~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 148 GGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999999998779999999999999977 99999999884
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-33 Score=255.28 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=141.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCc-c-----------cC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSIT-S-----------KK 75 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~-~-----------~~ 75 (321)
|+++|. ++|.+ ..++. .+. ..+++|+||||||||||+++|++++.|+ .|++...+. + ..
T Consensus 6 ~~~~~f-~~~~~--~~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~ 77 (251)
T cd03273 6 IILDGF-KSYAT--RTVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKA 77 (251)
T ss_pred EEEeCc-cccCc--CEeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEE
Confidence 555555 55654 22222 222 5699999999999999999999999876 457766543 1 24
Q ss_pred eEEEEcCCC---------CCCCCCCHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHcCCc--------------------
Q psy106 76 QLGFMPQQI---------SLYPEFTIDEMICYYGLIYG-M-SLQQIKEKAEYLQALLHLN-------------------- 124 (321)
Q Consensus 76 ~ig~v~Q~~---------~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~ll~~~~l~-------------------- 124 (321)
++++++|++ .+.+.+||.+++........ . ......+.+..+++.+++.
T Consensus 78 ~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 78 SVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 799999985 34567888887754332111 1 1222345677788888874
Q ss_pred c-ccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcC
Q psy106 125 H-FKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199 (321)
Q Consensus 125 ~-~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~d 199 (321)
. .++++.+||+|||||++||+||+ .+|+++++||||++||+..+..+++.|++++ +|.|+|++||+.+..+.||
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCC
Confidence 1 24788999999999999999998 5789999999999999999999999999985 4899999999966667799
Q ss_pred EEEEEe
Q psy106 200 MIGLMR 205 (321)
Q Consensus 200 rv~il~ 205 (321)
+++-+.
T Consensus 237 ~v~~~~ 242 (251)
T cd03273 237 VLFRTR 242 (251)
T ss_pred EEEEEE
Confidence 998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-32 Score=243.12 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=128.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCccEEEEC------CcccCeEEEEcCCC-----CCCCCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCIT----GQNVLNGGNIHLS------ITSKKQLGFMPQQI-----SLYPEFTIDE 94 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~----Gl~~p~~G~I~~~------g~~~~~ig~v~Q~~-----~l~~~ltv~e 94 (321)
++++.+| +++|+||||||||||+++|. |..+|++|.+..+ +.....++++||++ .....+|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 4567777 99999999999999999994 9999988866421 22235799999988 3445568888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR------VSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQR------v~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
|+.+. +..+ .... .++++.+||+||+|| ++||+|++.+|+++++||||++||+..+
T Consensus 96 ~~~~~------~~~~----~~~~--------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 96 NVIFC------HQGE----SNWP--------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred ceeee------chHH----HHHH--------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHH
Confidence 87542 1111 1111 267889999999996 7899999999999999999999999999
Q ss_pred H-HHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeC
Q psy106 169 E-EIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 169 ~-~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
. .+.+++.+++++ |.|||++||+++.+..||+++.|++
T Consensus 158 ~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 158 EESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9 999999999765 8999999999998877999998864
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=276.75 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCC
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgLD 164 (321)
||+.|++.|+....+ . ....++++.+++.. +++++.+||||||||++||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~-----i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchh-----h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 688888887654322 1 22345778888864 58899999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
+..+..+++.|++++++|.|||++||+++++..||+++.| ++|++++.|+++++...
T Consensus 866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999988899999999999999779999999 79999999999998754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=281.68 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=158.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHHcCCCC----------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLS---------CITGQNVL---------------- 62 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~---------~l~Gl~~p---------------- 62 (321)
.+++++++. ..|+|+||+|++||+++|.|+||||||||++ .+.|...+
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 577777752 2699999999999999999999999999999 55554322
Q ss_pred --------CccEEEECCc----c----------------------------c--CeEEE----EcCCC------------
Q psy106 63 --------NGGNIHLSIT----S----------------------------K--KQLGF----MPQQI------------ 84 (321)
Q Consensus 63 --------~~G~I~~~g~----~----------------------------~--~~ig~----v~Q~~------------ 84 (321)
.|+.+++-|. . . +-+|+ ++...
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 2223432110 0 0 11222 22111
Q ss_pred -----CCCCCCCHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh---cCC
Q psy106 85 -----SLYPEFTIDEMICYYGLI---YGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL---HDP 151 (321)
Q Consensus 85 -----~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~---~~P 151 (321)
..|..+||.|++.+...- +....++..+++ ++++.+++.. +++++.+||||||||++||+||+ .+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCC
Confidence 246678999999876542 122334455556 4678888864 58899999999999999999998 699
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe------CCEEEEecChhHHHh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR------KGILLEESPPKVLLE 220 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~------~G~i~~~g~~~~l~~ 220 (321)
+++||||||+|||+..++.++++|++++++|.|||++||+++++..||++++|. +|++++.|+++++..
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999888999999999999995599999996 799999999999865
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=281.37 Aligned_cols=210 Identities=28% Similarity=0.366 Sum_probs=178.8
Q ss_pred eEEEEeEEEEe--CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEECCccc------CeE
Q psy106 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSK------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y--~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~~g~~~------~~i 77 (321)
....+|+.+.- .++++++|+|||=-+.||..+||+|+|||||||||++|+|-.. ..+|+|.++|.+. +.+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34555555433 3344789999999999999999999999999999999998542 2368889999764 679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcCCcc-ccCCCCc----cChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYG---MSLQQIKEKAEYLQALLHLNH-FKRKCGS----LSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~----LSgGqkQRv~iA~aL~~ 149 (321)
|||-|++.-.+.+||+|-|.|.+.++. .+.++..+.++++++.+++++ .+.-++. ||..||+|+.||--|+.
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec
Confidence 999999877799999999999987752 345555678999999999975 4555555 99999999999999999
Q ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH--HhhcCEEEEEeC-CEEEEecChhH
Q psy106 150 DP-ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE--AKKSHMIGLMRK-GILLEESPPKV 217 (321)
Q Consensus 150 ~P-~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~--~~~~drv~il~~-G~i~~~g~~~~ 217 (321)
+| .+|+|||||||||.+++..+++.++++++.|.||+.+-|.+.- .+..|++++|++ |+.++.|++.+
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99 9999999999999999999999999999999999999999875 367999999975 69999999865
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=245.67 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=187.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+.+.++++||+..-..+ ...++++||+|.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|++.
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 35789999999875443 4689999999999999999999999999999999999999999999999763
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHHHHH------hC-CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHH
Q psy106 75 -KQLGFMPQQI---SLYPEFTIDEMICYYGLI------YG-MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 75 -~~ig~v~Q~~---~l~~~ltv~e~l~~~~~~------~~-~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv 141 (321)
..+||+|.|. .+-+++|+.||+.+.... ++ ......++.+..+.+.++... ...++.+||||++||+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 4699999986 578899999999765322 11 445667788888999998853 4677899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
-+||-|..+|++||+.+||-|||..+.+.+.+.|.+.+++|++|+++|-|++|+.. ||||++|.+|+++...++++
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999999999999999999999999999999976 99999999999998887765
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=262.86 Aligned_cols=123 Identities=24% Similarity=0.385 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhc---CCCEEEEeCCCCCCC
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLH---DPELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~---~P~lllLDEPtsgLD 164 (321)
||+.|.+.|+...... .....+++.+++.. +++++.+|||||+||++||++|+. +|+++||||||+|||
T Consensus 790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 5666666665433221 12345677888864 588999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHH
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVL 218 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l 218 (321)
+..+..+++.|++++++|.|||++||+++++..||+++.| ++|++++.|+++++
T Consensus 864 ~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 864 FDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999988899999999999999779999999 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=224.89 Aligned_cols=166 Identities=18% Similarity=0.176 Sum_probs=125.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-----cE----EEECCcccCeEEEEcCCCCCCCCCCHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-----GN----IHLSITSKKQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-----G~----I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
.++++++++.+| +.+|+||||||||||+.+|.-....+. |. +.-.|.....|.+.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 357788888887 889999999999999999974332221 11 11123333568899988776651
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL----LHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL----~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
.... .....+.++++. -...++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+
T Consensus 84 --------~~~~-~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 84 --------PLCV-LSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred --------cCCH-HHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHH
Confidence 1111 112344455554 2235788999999999999999999 589999999999999999999999
Q ss_pred HHHHHHHHhC---CceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 172 WNHLLYLAES---GRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 172 ~~ll~~l~~~---g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
.+.|+++.++ +.||+++||+++++..+|+|.+++.++
T Consensus 153 ~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 153 TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999987642 468999999999998899999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=250.79 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=164.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|.+.++|+++.|.++ ..++++++|-|+.++.++++||||||||||||+++|.+.|+.|.|.-.- ..++++.-|+..
T Consensus 387 ~pvi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~--H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS--HNKLPRYNQHLA 463 (614)
T ss_pred CCeEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc--cccchhhhhhhH
Confidence 6789999999999875 3689999999999999999999999999999999999999999996432 234666666543
Q ss_pred --CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 --LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 --l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+.-+.++.|++. ..+.. ....+.+..++..+|+.. .+.++++||.|||.||.+|++++..|.+|+|||||+
T Consensus 464 e~ldl~~s~le~~~---~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMM---PKFPD--EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhcCcchhHHHHHH---Hhccc--cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 333456666553 22221 122356777899999963 578899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHH
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVL 218 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l 218 (321)
|||......+.+.|.+. .-++|++|||...+.+ ++++++..+|.+. ..|+....
T Consensus 539 hLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 539 HLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 99999999999988654 4579999999999987 9999999988764 45665543
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=245.57 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=146.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
-+.+.|+++.|.+ ..+++|++|++.+|+-+||+|||||||||+|++|.|-..|..-++.+-- +.++ ...
T Consensus 75 dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~--------ls~e-~~p 143 (614)
T KOG0927|consen 75 DVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYL--------LSRE-IEP 143 (614)
T ss_pred cceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhh--------hccc-CCC
Confidence 4899999999998 7799999999999999999999999999999999999888655543311 0000 000
Q ss_pred CCCCHHHHHH-----------HHH--------------------HHhCCCHHHHHHHHHHHHHHcCC-cc-ccCCCCccC
Q psy106 88 PEFTIDEMIC-----------YYG--------------------LIYGMSLQQIKEKAEYLQALLHL-NH-FKRKCGSLS 134 (321)
Q Consensus 88 ~~ltv~e~l~-----------~~~--------------------~~~~~~~~~~~~~~~~ll~~~~l-~~-~~~~~~~LS 134 (321)
...++.+.+. +.. +.-....+..+.++..++.-++. .. .++++..||
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0111111111 100 00011112222333333333333 33 578899999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE-EEEe
Q psy106 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI-LLEE 212 (321)
Q Consensus 135 gGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~-i~~~ 212 (321)
||+|.|++|||||..+|++|+|||||++||+.+..-+-+.|.+..+ + ++++++|+-+.+.. |++|+-+++++ +.+.
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchhhhhhHhhhhheecccceeeec
Confidence 9999999999999999999999999999999999999998876532 1 89999999999987 99999999999 6677
Q ss_pred cChhHHHh
Q psy106 213 SPPKVLLE 220 (321)
Q Consensus 213 g~~~~l~~ 220 (321)
|+.++...
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 88877643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=240.86 Aligned_cols=193 Identities=25% Similarity=0.330 Sum_probs=153.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++|+.+.|.... .-+..||++|++||++-|+|.|||||||+++.++|+.+|++|+|.+||++. +-++
T Consensus 322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 489999999998742 468999999999999999999999999999999999999999999999864 1234
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccC--CCCccChHHHHHHHHHHHHhcCCC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FKR--KCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~--~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
-+|.|..+|+.+-..| .....+.++..++++.+.+ .|. ..-+||.|||+|+++.-|++-+.+
T Consensus 401 avFsDyhLF~~ll~~e------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~ 468 (546)
T COG4615 401 AVFSDYHLFDQLLGPE------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD 468 (546)
T ss_pred HHhhhHhhhHhhhCCc------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC
Confidence 4444444444321111 1111233444445444421 233 346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++++||=.+--||.-|+.|+..+ -.++++|+||+.+|||-.-...|||++.+++|++++.-
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999866 44578899999999998888889999999999998753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=235.66 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+++...++|.||+ . .|+-=.=+|..||++|++||||-||||+.++|+|.++|++|. . ..-+++|=||...-.
T Consensus 342 lv~y~~~~k~~g~--F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~----~~~~vSyKPQyI~~~ 413 (591)
T COG1245 342 LVEYPDLKKTYGD--F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E----EDLKVSYKPQYISPD 413 (591)
T ss_pred eeecchheeecCc--e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-C----ccceEeecceeecCC
Confidence 3455566666664 1 233334456678899999999999999999999999999998 1 124699999987766
Q ss_pred CCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 88 PEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
.+.||.+.+.-.... ++. . ....++.+-+.++. .++++.+|||||.|||+||.||.+++++++||||++.||.
T Consensus 414 ~~gtV~~~l~~~~~~~~~~--s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGS--S---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred CCCcHHHHHHHhhhhhccc--c---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 778999977643322 111 1 11234555666665 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
+.+..+.+.|++.. +.++|.+++.||+-.+.. +||+++.+
T Consensus 489 EqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 489 EQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999988 458999999999999988 99998876
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=229.90 Aligned_cols=186 Identities=14% Similarity=0.112 Sum_probs=125.0
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC--------cc------c
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI--------TS------K 74 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g--------~~------~ 74 (321)
|+++|. +.|.+ .. +|...++ +++|+||||||||||+.+|+++..++.|++...+ .. .
T Consensus 4 i~l~nf-~~~~~--~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 4 LELENF-KSYKG--RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEECc-cccCC--Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 677776 66654 21 2333344 9999999999999999999999888777765432 11 1
Q ss_pred CeEE--EEcCCCCC-CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-----------------------ccC
Q psy106 75 KQLG--FMPQQISL-YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-----------------------FKR 128 (321)
Q Consensus 75 ~~ig--~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------------------~~~ 128 (321)
..+. |..|++.. .-..++.+....+ ...+. ....+..+++++.+++.. .++
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~-~ingk--~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~ 151 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSY-RINGK--VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFR 151 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEE-EECCE--EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhh
Confidence 2333 33333221 0000111110000 00111 111223345555555531 123
Q ss_pred CCCccChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLLHD----PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++.+||+|||||++||+|++.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||+.+.++.||++++|
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 4589999999999999999875 999999999999999999999999999987799999999998877779999888
Q ss_pred eC
Q psy106 205 RK 206 (321)
Q Consensus 205 ~~ 206 (321)
..
T Consensus 232 ~~ 233 (247)
T cd03275 232 YR 233 (247)
T ss_pred Ee
Confidence 64
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=242.58 Aligned_cols=186 Identities=27% Similarity=0.352 Sum_probs=153.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
..+|+++|++..-+++ ...+++.||++++||.+-|.||||||||||+|+|+|+.|.-+|+|... ....+-|+||.|.
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--~~~~~lflpQ~PY 466 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--ADSALLFLPQRPY 466 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--CCCceEEecCCCC
Confidence 4689999999998876 478999999999999999999999999999999999999999999775 2346899999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc----cc---CCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH----FK---RKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~---~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+... |.+|-+.|+......++ +.+.+.+..++|++ ++ +=-..||+|||||+++||.|+++|++++|||
T Consensus 467 ~p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 467 LPQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred CCCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 7666 99999987654432333 33445666667643 11 2235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
-|++||+.++..+++++++.. .+.|||-++|....-...++
T Consensus 542 ATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 542 ATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred chhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhh
Confidence 999999999999999997743 58999999998876655444
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=217.32 Aligned_cols=216 Identities=24% Similarity=0.353 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----ccEEEECCccc------
Q psy106 7 CAIRVENAYKRHS--SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN----GGNIHLSITSK------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~--~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~----~G~I~~~g~~~------ 74 (321)
+.+.++|++..+. .+..++++++|+++.+||+-|++|.+|||||-..+.|+|..+-+ ....++++.+.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4678999998773 33367999999999999999999999999999999999987632 22223333221
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHH-------HHHHHhCCCHHHHHHHHHHHHHHcCCcc----ccCCCCccC
Q psy106 75 -------KQLGFMPQQIS--LYPEFTIDEMIC-------YYGLIYGMSLQQIKEKAEYLQALLHLNH----FKRKCGSLS 134 (321)
Q Consensus 75 -------~~ig~v~Q~~~--l~~~ltv~e~l~-------~~~~~~~~~~~~~~~~~~~ll~~~~l~~----~~~~~~~LS 134 (321)
+.|+++||+|. +.|.-++...+. |-++.+.. -...++++-+++..+|+.+ ...++.+|-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~-F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQR-FGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhh-hchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 46899999985 555544433221 11111110 0123466777889999843 357899999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEe
Q psy106 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 135 gGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~ 212 (321)
-||-|+|.||.|++.+|++||.||||+++||..+.+++.++.+++ .+|+||+++|||+..+.. ||++-+|.-|.-+++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999998 469999999999999977 999999999999999
Q ss_pred cChhHHHhhcc
Q psy106 213 SPPKVLLEKYN 223 (321)
Q Consensus 213 g~~~~l~~~~~ 223 (321)
++.+++.+...
T Consensus 241 a~~e~l~~~Ph 251 (330)
T COG4170 241 APSEELVTMPH 251 (330)
T ss_pred cchhHHhcCCC
Confidence 99999887644
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=203.61 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=163.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
+.+|+++++.++|... .+++.|+|++++.|.-..++|.||||||||+++|+|---.-.|.|.+.|.+. ..
T Consensus 11 ~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 4579999999999865 4799999999999999999999999999999999997666668898887653 12
Q ss_pred EEEEcC----------CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHH
Q psy106 77 LGFMPQ----------QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 77 ig~v~Q----------~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a 146 (321)
..|+-. +..+-.++++.+.+. . ..+... ++-+.+.+.++++ ..-+.+.+|-|||+||.||+.
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mif-g--V~g~dp----~Rre~LI~iLDId-l~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIF-G--VGGDDP----ERREKLIDILDID-LRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHh-h--ccCCCh----hHhhhhhhheecc-ceEEEeeccccchhhhHHHHh
Confidence 344432 223344667765443 1 122222 3445566666665 233567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|++.=++|+|||-|--||..++..+++.+++.++ +|.||+.+||..+-++. .++++.|++|+++..-+.+++.
T Consensus 162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIK 236 (291)
T ss_pred cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhh
Confidence 9999999999999999999999999999999884 69999999999998887 9999999999999855554443
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=232.39 Aligned_cols=199 Identities=24% Similarity=0.232 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC-eEEEEcCCC-CC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK-QLGFMPQQI-SL 86 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~-~ig~v~Q~~-~l 86 (321)
|.+++.+..||+ +.+|++-++++..|.-|||+||||+|||||||+|+. |.|........ +--+++-.. .+
T Consensus 81 i~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 81 IHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred eeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhh
Confidence 788899999998 679999999999999999999999999999999996 44432211100 111222111 23
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
..++++.+.+.--..+... ....+....++.-+|... ..++.++||||-|-|++|||||..+||+|+|||||+.||
T Consensus 153 ~~D~~~~dfl~~e~~l~~~--~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAG--LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hccHHHHHHHHhhhhhhcc--chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 3344444444322111110 011233333666677653 468889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
..+..-+-+.|..+ +.|+|+||||-+++.. |..|+-+++-++- +-|+.+++.+
T Consensus 231 v~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 231 VVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred hHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999888664 4899999999999987 9999988887763 4577666543
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=225.53 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=164.4
Q ss_pred CCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 3 LKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 3 ~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
+.+.|.+++.++++.|..+....+.++++.++.-+-.+++|+||+||||+++++.|-..|..|.+.+.+ +.+|+|.+|
T Consensus 357 ~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--r~ri~~f~Q 434 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--RLRIKYFAQ 434 (582)
T ss_pred cCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--cceecchhH
Confidence 345688999999999976433689999999999999999999999999999999999999999887653 468999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
...=+-++.|.+.-.+.....|... +.+..-+..+|++. ..+++.+||||||-||++|.+...+|.+|+|||||
T Consensus 435 hhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT 510 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT 510 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence 8643334455443333333334443 34455677889863 45668999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
+.||..+...+.+.|+.. +-.||++|||.++++. |+.+++.++|++..
T Consensus 511 NhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 511 NHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999988888765 4569999999999987 99999999999875
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=203.07 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=111.7
Q ss_pred eeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHH
Q psy106 26 LDKLCMTVQKST-IYSLLGASGCGKTTLLSCIT--------GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 26 L~~isl~i~~Ge-i~~llGpNGaGKSTLl~~l~--------Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
+-++||++.+|+ +++|.||||||||||+|+|+ |...|....+ .++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~--------~~~~~~~~~~~---------- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS--------SLPVFENIFAD---------- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc--------cCcCccEEEEe----------
Confidence 457899999995 89999999999999999998 5444422111 23333332110
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HH
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NH 174 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~l 174 (321)
++.. ..+...+++|+||||++.++++ +.+|+++++|||++|+|+..+..++ .+
T Consensus 79 ------------------------lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 79 ------------------------IGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ------------------------cCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 0111 1345668999999999999988 4899999999999999999999996 47
Q ss_pred HHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEec
Q psy106 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEES 213 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g 213 (321)
++++++.|.|+|++||+.+..+.||++..|++|++..++
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 134 LEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 788777799999999996555569999999999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-26 Score=218.92 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=154.6
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.|++-+.++++.|.++ ++.+++++|-|.-..-++|+||||.||||||++|.|-+.|+.|+.+-+. +-+||+.-|..+
T Consensus 584 PPvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh--rL~iG~FdQh~~ 660 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH--RLRIGWFDQHAN 660 (807)
T ss_pred CCeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc--eeeeechhhhhH
Confidence 5789999999999765 5799999999999999999999999999999999999999999987542 246999888753
Q ss_pred --CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-ccc-CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 86 --LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-HFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 86 --l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~-~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
+-..-|..|++. +.++++..+. ...+-.+|+. +.+ -++..||||||-||++|-.-+..|++|||||||+
T Consensus 661 E~L~~Eetp~EyLq---r~FNlpyq~A----RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 661 EALNGEETPVEYLQ---RKFNLPYQEA----RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred HhhccccCHHHHHH---HhcCCChHHH----HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 444456666654 4556665433 3456677774 343 4688999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
+||.++...+.+.|.++ .-.|||+|||-..+.. .-.++++++..|
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999876 3469999999998854 235666665443
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=213.87 Aligned_cols=193 Identities=23% Similarity=0.290 Sum_probs=154.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-cCeEEEEcCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-KKQLGFMPQQI 84 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-~~~ig~v~Q~~ 84 (321)
+.+|++++++..-++....+++|+||+|++|+-+-|.||||||||+|+|+++|+.+..+|++..-... .+.+=|+||.|
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 46899999999887633668899999999999999999999999999999999999999999864332 25589999999
Q ss_pred CCCCCCCHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcC----------Ccc-ccC-CCCccChHHHHHHHHHHHH
Q psy106 85 SLYPEFTIDEMICYYGLI-----YGMSLQQIKEKAEYLQALLH----------LNH-FKR-KCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~-----~~~~~~~~~~~~~~ll~~~~----------l~~-~~~-~~~~LSgGqkQRv~iA~aL 147 (321)
.+-.. |.+|.+.|+... ...+++ .+...++... ++. .+. -...||+|||||+++||-+
T Consensus 511 Ymt~G-TLRdQvIYP~~~~~~~~~~~~d~----~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 511 YMTLG-TLRDQVIYPLKAEDMDSKSASDE----DILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred Ccccc-chhheeeccCccccccccCCCHH----HHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 76555 999998887321 122222 2222333322 221 112 2357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
.++|++-||||-||++|......+.+.+++ .|+|.|-++|.-..-+.-|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999999987765 59999999999988887888888874
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=217.48 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=136.4
Q ss_pred eEEEEeCCCCCceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE-----------CCccc------
Q psy106 13 NAYKRHSSKLPYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-----------SITSK------ 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~-----------~g~~~------ 74 (321)
+++.+||.+ -++=-.+ ...+|+++||+||||-||||.+|+|+|.++|+=|+-.- .|...
T Consensus 79 e~vHRYg~N---gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN---GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC---ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 457788753 2333344 35689999999999999999999999999998776531 11110
Q ss_pred -----CeEEEEcCCCCCCCC---CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQISLYPE---FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 75 -----~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~ 145 (321)
-++..=||.....|. -+|.|.|.-. ..+-..+++.+.+++.. +++.+++|||||.||+|||.
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhh---------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 122222332211111 1444433210 01123567788888876 79999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
|++++++++++|||||-||...+-.....|+++++.+++||++.||+..+.. +|.|.++.
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999999889999999999999988 99988876
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=192.41 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=71.6
Q ss_pred ccCCCCccChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-ceEEEecCChhHHhh-c
Q psy106 126 FKRKCGSLSGGQQRRVSLAITL----LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-G-RTILITTHYIDEAKK-S 198 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g-~tIil~tH~l~~~~~-~ 198 (321)
.+..+.+||+|||||+.+|+++ +.+|+++|+||||+|||+..+..+++.+.+++++ | .|+|++||++.+... |
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3567899999999999877554 5899999999999999999999999999998765 5 589999999987643 6
Q ss_pred C--EEEEEeCCE
Q psy106 199 H--MIGLMRKGI 208 (321)
Q Consensus 199 d--rv~il~~G~ 208 (321)
| ++++|++|+
T Consensus 200 ~~~~v~~l~~g~ 211 (213)
T cd03277 200 EKMTVLCVYNGP 211 (213)
T ss_pred CceEEEEEecCc
Confidence 5 889999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=179.67 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=69.5
Q ss_pred cChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 133 LSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.+.+++++|.|+|++||+++.+..||+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999987778999999999988877999998875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=179.56 Aligned_cols=139 Identities=22% Similarity=0.236 Sum_probs=104.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEE-EcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGF-MPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~-v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
...++.+.++.+..|+|||||||||+++.+....-..+|.+..... .+.|+ +|+....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~------------------ 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG--VKAGCIVAAVSAEL------------------ 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc--ccCCCcceeeEEEE------------------
Confidence 3445566666799999999999999999987665555444432110 01111 11111100
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 106 SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 106 ~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
+ ....+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.+.+.++.++
T Consensus 72 -----------------i----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 -----------------I----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred -----------------e----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0 0012299999999999999987 78999999999999999999999999888655
Q ss_pred CceEEEecCChhHHhhcCEEEEEeC
Q psy106 182 GRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 182 g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
|.++|++||+.+.++.+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 8999999999999988999998864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=185.99 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=105.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ...|.....-.+++|...+|+.+|+.||+.+....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~ 86 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISY 86 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCccCcccceEEEeccchhccccccCh
Confidence 45778877665 799999999999999999999986531 11232221124677866789999999998764322
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAES 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~~ 181 (321)
+ ..+. +++.++++.++. .+|+++|+||||+|+|+..+..+. .+++++.+.
T Consensus 87 ~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~ 137 (199)
T cd03283 87 F---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK 137 (199)
T ss_pred H---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC
Confidence 1 2222 345555555431 799999999999999999998765 578888777
Q ss_pred CceEEEecCChhHHhh---cCEEEEE
Q psy106 182 GRTILITTHYIDEAKK---SHMIGLM 204 (321)
Q Consensus 182 g~tIil~tH~l~~~~~---~drv~il 204 (321)
|.|+|++||+++++.. .+++-.+
T Consensus 138 ~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 138 NTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 9999999999999854 3455443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=216.80 Aligned_cols=198 Identities=26% Similarity=0.370 Sum_probs=168.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CccEEEECCccc------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL---NGGNIHLSITSK------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p---~~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~ 93 (321)
..+|+|+|.-+++|+.+.++||.|||||||+++++|-..- ..|+|.++|.+. +.++|.+|+..-++.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999987532 256999998763 5699999999999999999
Q ss_pred HHHHHHHHHhCC-------CHHHHH-HHHHHHHHHcCCcc-c-----cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 94 EMICYYGLIYGM-------SLQQIK-EKAEYLQALLHLNH-F-----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 94 e~l~~~~~~~~~-------~~~~~~-~~~~~ll~~~~l~~-~-----~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
|.+.|.++..+. .+.+.. ...+.+++.+|+++ . |...+-.|||||+||++|-+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 999998876532 111111 14568899999865 3 455678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhH-H-hhcCEEEEEeCCEEEEecChhHHHh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDE-A-KKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~-~-~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|.|||..+.-++.+.++++++ -+.|.+++-|.... + +..|.|++|.+|++++.|+.++++.
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999985 58898888887764 3 4599999999999999999999875
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-22 Score=218.73 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcC---CCEEEEeCCCCCC
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD---PELLILDEPTSGI 163 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgL 163 (321)
+|||.|.+.|+.. .+.+.+ .-..+..+||.. +.++..+|||||.||+-||..|..+ +.+++|||||+||
T Consensus 1660 ~mtv~ea~~~F~~-----~~~i~~-~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1660 QTPIEEVAETFPF-----LKKIQK-PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred cCCHHHHHHHhhc-----cHHHHH-HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 3556665555421 122223 345667788875 6899999999999999999999876 7999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
++...+.+++.+.+|.+.|.|||++.||++.+..||+++=| +.|+|++.|+|+++.+.
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 99999999999999999999999999999999999999988 45899999999999753
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-23 Score=186.82 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=112.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE-EEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG-FMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++++..++++++|.||||+||||++++++=. .-..++| |+|.+...++ .
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------~~la~~g~~vpa~~~~~~---~--------- 72 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------VLMAQIGCFVPCDSADIP---I--------- 72 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------HHHHHhCCCcCcccEEEe---c---------
Confidence 4689999999999999999999999999999999811 1113344 5555432211 0
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP---TSGIDPVIAEEIWNHLL 176 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP---tsgLD~~~~~~i~~ll~ 176 (321)
.+.++..+++. +.....+|.||+|++.+++++ +.+|+++||||| |+++|+.+... ..++
T Consensus 73 ------------~~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~ 136 (222)
T cd03285 73 ------------VDCILARVGAS--DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAE 136 (222)
T ss_pred ------------cceeEeeeccc--cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHH
Confidence 11123334433 233578999999999999999 899999999999 99999998853 3444
Q ss_pred HHHh-CCceEEEecCChhHHh-hcCEEEEEeCCEEEEecC
Q psy106 177 YLAE-SGRTILITTHYIDEAK-KSHMIGLMRKGILLEESP 214 (321)
Q Consensus 177 ~l~~-~g~tIil~tH~l~~~~-~~drv~il~~G~i~~~g~ 214 (321)
.+.+ .|.++|++||+ .++. .||++..+++|++...++
T Consensus 137 ~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 137 YIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 5543 58999999996 5554 499999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-22 Score=186.59 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=69.3
Q ss_pred CccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 131 GSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
.+|||||+||+++|++++. +|+++++||||++||+..+..+.+.++++.+ +.|+|++||+++....||++++|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEEE
Confidence 4599999999999997654 9999999999999999999999999998864 7899999999997666999999988
Q ss_pred CE
Q psy106 207 GI 208 (321)
Q Consensus 207 G~ 208 (321)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=182.18 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=108.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
-..++++.+|++++|+||||||||||+++|++.. .+..|.... . ...+++|..|.. ..+...
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~-~~~~i~~~dqi~---~~~~~~------------ 82 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A-ESASIPLVDRIF---TRIGAE------------ 82 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c-cccccCCcCEEE---EEecCc------------
Confidence 3446677799999999999999999999999543 223332111 0 011222221110 000000
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCce
Q psy106 106 SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-HLLYLAESGRT 184 (321)
Q Consensus 106 ~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~~g~t 184 (321)
+......+++|.+++| +..+.+++.+|+++|+||||+|+||..+..+.. +++.+.+.+.+
T Consensus 83 ------------------d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 83 ------------------DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred ------------------ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 0123345677877776 666678889999999999999999998888755 56667677899
Q ss_pred EEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 185 ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 185 Iil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
+|++||+.+.++.|+++..+++|++...++.+++
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 9999999988888889999999999888765444
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=197.27 Aligned_cols=126 Identities=26% Similarity=0.420 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGI 163 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgL 163 (321)
+|||.|-..|+... +.+.++.+ .+..+||.. +.++..+|||||.|||-||.-|.... -++||||||+||
T Consensus 783 ~MTveEA~~FF~~~-----p~I~rkLq-tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAI-----PKIARKLQ-TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcc-----hHHHHHHH-HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 35666655554321 22333343 455678875 68999999999999999999999988 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
-+.-.+++++.|.+|..+|-|||++.|+|+.+..||+|+=| ..|+|++.|+|+++.+
T Consensus 857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999987 4689999999999976
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=188.53 Aligned_cols=178 Identities=28% Similarity=0.407 Sum_probs=141.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCccEEEECCcccCeEEEEcCCCC-CCCCCCHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--------NVLNGGNIHLSITSKKQLGFMPQQIS-LYPEFTIDE 94 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~~ig~v~Q~~~-l~~~ltv~e 94 (321)
.+++|+||++++|++++++|+|||||||++++|+|. ++|++|.|.+--.. --+.+|.+.- -|..-|+.|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--VSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--hhhccCcccccccCchhHHH
Confidence 489999999999999999999999999999999975 57999999874322 2345665432 133456666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i 171 (321)
.+.- ..+ + -..+.+++...++.+ ..++.++||-|||.|+.||++++..|.+++.||-.|.||+.+...+
T Consensus 475 hl~s---~tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rV 546 (593)
T COG2401 475 HLRS---KTG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRV 546 (593)
T ss_pred HHhh---ccC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHH
Confidence 5431 111 1 123445777778754 3678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCceEEEecCChhHHhh--cCEEEEEeCCEEEE
Q psy106 172 WNHLLYLA-ESGRTILITTHYIDEAKK--SHMIGLMRKGILLE 211 (321)
Q Consensus 172 ~~ll~~l~-~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~ 211 (321)
..-|.+++ +.|.|.+++||+.+.... -|+++.+.-|+...
T Consensus 547 ArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 547 ARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 99999998 569999999999999864 69998887776543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=206.50 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHhCCCHH----------HHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSLQ----------QIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.++|.|.+.|.-.+ +.+.. +..++++ +++.+++.. +++++.+|||||||||+||+||+.+| +++
T Consensus 436 ~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll 513 (943)
T PRK00349 436 ELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 513 (943)
T ss_pred cCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 56788877774332 22221 2334443 567778864 58999999999999999999999997 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||..+..++++|++++++|.|||++||+++++..||++++| ++|++++.|+++++..
T Consensus 514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999988899999999999998779999999 9999999999998754
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-21 Score=189.12 Aligned_cols=178 Identities=24% Similarity=0.362 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
|.++|+-.--+.+ ..++..+||+|++|-.+.|+||||||||+|+|+|.|+.|...|...+. ...++-|+||.|.+-
T Consensus 482 I~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--~~~~mFYIPQRPYms- 557 (728)
T KOG0064|consen 482 IILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--RPNNIFYIPQRPYMS- 557 (728)
T ss_pred eEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--CCcceEeccCCCccC-
Confidence 7888887766655 458899999999999999999999999999999999999988877653 235699999998654
Q ss_pred CCCHHHHHHHHH-----HHhCCCHHHHHHHHHHHHHHcCCcc----------ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 89 EFTIDEMICYYG-----LIYGMSLQQIKEKAEYLQALLHLNH----------FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 89 ~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~----------~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
.-|.+|.+.|+- ...+..+++..+ ++..+.+++ ...--..||||+|||+++||.+-++|+.
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~----iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky 633 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEA----ILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY 633 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHH----HHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch
Confidence 335566554431 122444433222 223222221 1111246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
-+|||-||+..+.....+++..+. .|.+.+-+||.+..-..
T Consensus 634 alLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 634 ALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred hhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 999999999999999999887744 59999999999988654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=174.76 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=106.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
..+.+|++|++++|++++|+||||+||||++++++++. ...++|+-. |..+..+++.|++..
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------~la~~G~~v--pa~~~~l~~~d~I~~---- 77 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------IMAQIGCFV--PAEYATLPIFNRLLS---- 77 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------HHHHcCCCc--chhhcCccChhheeE----
Confidence 56899999999999999999999999999999999874 112333211 344455566665521
Q ss_pred hCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 103 YGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
.++.. ..++..+++|+||+|+ ..+.+++.+|+++|+|||++|+||.....+ ++.+..+.+
T Consensus 78 -----------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 78 -----------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred -----------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 11222 1346678999999975 566678999999999999999999776654 556777777
Q ss_pred CCceEEEecCChhHHhh
Q psy106 181 SGRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~g~tIil~tH~l~~~~~ 197 (321)
.|.++|++||+.+.++.
T Consensus 140 ~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 140 KESTVFFATHFRDIAAI 156 (204)
T ss_pred cCCEEEEECChHHHHHH
Confidence 79999999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=201.90 Aligned_cols=130 Identities=25% Similarity=0.423 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSL----------QQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.||+.|.+.|...+. ... ++..++.+ .+..+++.. +++++.+|||||+|||.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 567777776654431 111 11222332 345567764 58899999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||..+..++++|++++++|.|||+++||++++..||++++| ++|+|++.|+++++..
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999988899999999999998789999999 9999999999998753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-22 Score=192.00 Aligned_cols=203 Identities=25% Similarity=0.255 Sum_probs=143.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--C-CCCCccEEEECCccc----------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--Q-NVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l-~~p~~G~I~~~g~~~---------- 74 (321)
-|+++|.+.+-.+ +..+.|.|+.|-.|.-||++||||-||||||+.|+. + ++|. =.+.++....
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-IDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-IDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-CceEeeeeeeeecCcHHHHH
Confidence 3889999988877 568999999999999999999999999999999974 2 4443 2343322110
Q ss_pred ------CeEEEEcCCCC-----CCCCCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 ------KQLGFMPQQIS-----LYPEFTIDEMICYY-GLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 ------~~ig~v~Q~~~-----l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
++..++-.+.. --.+.|+.|-+.-. ..+........+.++..++.-+|.+. .+++...+|||-|-|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 11111111100 01233444443211 11211112223345555666666653 478889999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEE-ecChh
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLE-ESPPK 216 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~-~g~~~ 216 (321)
|+|||||..+|-+|.|||||+.||......+-+.|+-+ .+|.+++|||-.++.. |+.|+.+++-++-+ -|.-.
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999999999999999999999888888887665 4799999999999987 99999999988754 35443
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=166.87 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-c
Q psy106 129 KCGSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-S 198 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~ 198 (321)
....+|+||||++++|++|+ .+|+++++||||++||+..+..+++.+.++. .+++++|+.+.+.. |
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchh
Confidence 35568999999999999985 7999999999999999999999999997653 46777777777655 6
Q ss_pred ---CEEEEEeCCEE
Q psy106 199 ---HMIGLMRKGIL 209 (321)
Q Consensus 199 ---drv~il~~G~i 209 (321)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=164.43 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=106.7
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++|+.++ ++++|+|||||||||++|+++++.-. ..|.. +... ..++++++| +|+.+++.|++...
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~~-~~~i~~~~~---i~~~~~~~~~ls~g-- 89 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPAS-KAEIGVVDR---IFTRIGASDDLAGG-- 89 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-eccc-cceecceee---EeccCCchhhhccC--
Confidence 4588999999988 99999999999999999999865322 22221 1111 145666654 45666666665422
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP---TSGIDPVIAEEIWNHLL 176 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP---tsgLD~~~~~~i~~ll~ 176 (321)
.|.=+..+..+++++ +.+|+++||||| |+++|+... ...++.
T Consensus 90 -------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~ 136 (216)
T cd03284 90 -------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVE 136 (216)
T ss_pred -------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHH
Confidence 122223333344333 579999999999 888887542 344555
Q ss_pred HHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 177 YLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 177 ~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+.+. +.|+|++||+.+..+.+|++..+++|++...++.+++.
T Consensus 137 ~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 137 YLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 55555 89999999998666668887777889988877776654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=169.88 Aligned_cols=180 Identities=20% Similarity=0.287 Sum_probs=139.4
Q ss_pred EEeCCCCCceeeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEECCcccCeEEEEcCCCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKST-----IYSLLGASGCGKTTLLSCITGQNVLNGG-NIHLSITSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Ge-----i~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~ig~v~Q~~~l~~~ 89 (321)
++|++- +.-+-+..|.|+.|+ ++..+|.||.||||++++++|.++|+.| ++ +.-.++|=||...--..
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~-----p~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI-----PVLNVSYKPQKISPKRE 416 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc-----cccceeccccccCcccc
Confidence 346553 346788999999885 6899999999999999999999999876 22 22458999998765555
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~ 168 (321)
-||++.+.--.+-... .. ..+....+-+.+++ .++.+.+||||++|||++|.+|-..+++++.|||.+-||.+.|
T Consensus 417 ~tvR~ll~~kIr~ay~-~p---qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQR 492 (592)
T KOG0063|consen 417 GTVRQLLHTKIRDAYM-HP---QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQR 492 (592)
T ss_pred chHHHHHHHHhHhhhc-CH---HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHH
Confidence 6888765421111111 11 22333444444544 6888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 169 EEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 169 ~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
..--..+++.- +.++|-.++.||+-.+.+ +||+++.+
T Consensus 493 i~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 493 IIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 88888888865 668999999999998887 99998775
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=154.25 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++.|.||||+||||++|.++ ..+....|..... . ..+++++.+-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~-~~~~~~~d~i--------------------------------- 45 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-E-SAELPVFDRI--------------------------------- 45 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-h-heEecccceE---------------------------------
Confidence 36799999999999999997 3333333322110 0 0112221110
Q ss_pred HHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CceEEEecCChh
Q psy106 117 LQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAES-GRTILITTHYID 193 (321)
Q Consensus 117 ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~~-g~tIil~tH~l~ 193 (321)
...++.+ ..++..+++|+|++|...+++ .+.+|+++|+|||++|+||.....+. .+++.+.++ +.++|++||+.+
T Consensus 46 -l~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 46 -FTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred -EEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 1112221 135667899999887444433 23599999999999999999877764 566677664 899999999997
Q ss_pred HHhhcCEEEEEeCCEEEE
Q psy106 194 EAKKSHMIGLMRKGILLE 211 (321)
Q Consensus 194 ~~~~~drv~il~~G~i~~ 211 (321)
....||+---++++++..
T Consensus 124 l~~~~~~~~~v~~~~~~~ 141 (185)
T smart00534 124 LTKLADEHPGVRNLHMSA 141 (185)
T ss_pred HHHHhhcCccceEEEEEE
Confidence 555577544445555443
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=157.49 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC----------eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----------QLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~----------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 106 (321)
.-++|+||||||||||+++|+|+++|++|++.++|++.. .++++||.. +.+.++|.+|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~---------- 180 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGC---------- 180 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccc----------
Confidence 568999999999999999999999999999999886531 123333322 12222332221
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEE
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTIL 186 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIi 186 (321)
.|.....+.+.+++|+++++|||++ .+.+..++..+ +.|+|+|
T Consensus 181 ------------------------------~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI 223 (270)
T TIGR02858 181 ------------------------------PKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSII 223 (270)
T ss_pred ------------------------------hHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEE
Confidence 1111113333447999999999974 33344555554 4699999
Q ss_pred EecCChhH--H-----------hh-cCEEEEEeCCEEEEecChhHHH
Q psy106 187 ITTHYIDE--A-----------KK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 187 l~tH~l~~--~-----------~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
++||+.+. + .. +||+++|++|+ ..|+++++.
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99997655 4 13 89999999887 667666543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-17 Score=146.30 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=93.5
Q ss_pred eeeeeeEEEeCC--cEEEEEcCCCCcHHHHHHHHH--cCCCCCccEEEECCcccCeEEEEcCCCCC-CCCCCHHHHHHHH
Q psy106 25 VLDKLCMTVQKS--TIYSLLGASGCGKTTLLSCIT--GQNVLNGGNIHLSITSKKQLGFMPQQISL-YPEFTIDEMICYY 99 (321)
Q Consensus 25 iL~~isl~i~~G--ei~~llGpNGaGKSTLl~~l~--Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l-~~~ltv~e~l~~~ 99 (321)
+=+|+++ ..+ .+++|.||||+|||||+|.++ +++ +..|...... ..+++|..|...- ...-++.+++
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~~~~~~~d~i~~~l~~~~si~~~~--- 89 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--SATIGLVDKIFTRMSSRESVSSGQ--- 89 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--CcEEeeeeeeeeeeCCccChhhcc---
Confidence 4455554 444 799999999999999999998 434 5667665432 2457887775421 1111221111
Q ss_pred HHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHH
Q psy106 100 GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA-EEIWNHLLYL 178 (321)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~-~~i~~ll~~l 178 (321)
+++ .-+-||+++|++++.+|+++|+|||++|+|+... ..+...++++
T Consensus 90 -------------------------------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l 137 (213)
T cd03281 90 -------------------------------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHL 137 (213)
T ss_pred -------------------------------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHH
Confidence 111 2356889999999999999999999999999764 4446788888
Q ss_pred HhC---CceEEEecCChhHHhh
Q psy106 179 AES---GRTILITTHYIDEAKK 197 (321)
Q Consensus 179 ~~~---g~tIil~tH~l~~~~~ 197 (321)
.+. +.++|++||+.+.++.
T Consensus 138 ~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 138 LKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HhcCCCCcEEEEEcChHHHHHh
Confidence 654 3589999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=172.38 Aligned_cols=133 Identities=20% Similarity=0.302 Sum_probs=97.1
Q ss_pred eeEEEeCC-cEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC
Q psy106 29 LCMTVQKS-TIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 29 isl~i~~G-ei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 106 (321)
+|+++..+ ++++|.||||+|||||||+++|. +.+..|. ++|..... .+...+.+. ....
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------~Vpa~~~~--~~~~~d~i~-----~~i~ 374 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------PIPANEHS--EIPYFEEIF-----ADIG 374 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------CccCCccc--cccchhhee-----eecC
Confidence 78889888 99999999999999999999987 3444441 34443210 011111110 0011
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceE
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAESGRTI 185 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~~g~tI 185 (321)
.. + ......+++|+||++++.+++++ .+|.++|+|||++|+||.....+ +.++..+.+.|.++
T Consensus 375 ~~---~------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~v 438 (771)
T TIGR01069 375 DE---Q------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQV 438 (771)
T ss_pred hH---h------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 10 0 02245678999999999998877 89999999999999999999998 56778887789999
Q ss_pred EEecCChhHHh
Q psy106 186 LITTHYIDEAK 196 (321)
Q Consensus 186 il~tH~l~~~~ 196 (321)
|++||+.+...
T Consensus 439 iitTH~~eL~~ 449 (771)
T TIGR01069 439 LITTHYKELKA 449 (771)
T ss_pred EEECChHHHHH
Confidence 99999988754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=143.63 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-c-
Q psy106 130 CGSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-S- 198 (321)
Q Consensus 130 ~~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~- 198 (321)
...+|.||||++++|++|+ .+|++++||||+++||+..+..+++.+.++ +..++++||+.+.+.. +
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhc
Confidence 4689999999999999996 799999999999999999999999988654 4579999999887754 3
Q ss_pred -CEEEEEeCCEE
Q psy106 199 -HMIGLMRKGIL 209 (321)
Q Consensus 199 -drv~il~~G~i 209 (321)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-16 Score=141.41 Aligned_cols=73 Identities=27% Similarity=0.329 Sum_probs=57.3
Q ss_pred CccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 131 GSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
..||||||.+++||.-|+ .++++++||||.++||+..+..+.++|+++.+ ..-+|++||+...++.||+.+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 399999999999996653 47899999999999999999999999998864 47799999999999989876554
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=133.64 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=93.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc-CCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG-QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G-l~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+.+|++|++.+|++++|.||||+||||+++++++ .+.++.|...... . .+++|..|- +-.+...|.+.-
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~-~~~~~~~~i---~~~~~~~d~~~~--- 89 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S-ATLSIFDSV---LTRMGASDSIQH--- 89 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c-eEEeccceE---EEEecCcccccc---
Confidence 468999999999999999999999999999999999 6778888765432 1 234443331 111111111110
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
..++++. +-++++-+..-+.+|.++|+|||.+|.|+.....+ +.++..+.+
T Consensus 90 ---------------------------~~StF~~-e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 90 ---------------------------GMSTFMV-ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred ---------------------------ccchHHH-HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh
Confidence 0011111 11122222223568999999999999997776664 567777776
Q ss_pred C-CceEEEecCChhHHhh
Q psy106 181 S-GRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~-g~tIil~tH~l~~~~~ 197 (321)
. +.++|++||+.+.++.
T Consensus 142 ~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 142 EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred ccCCeEEEEcccHHHHHH
Confidence 5 8899999999998653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-15 Score=160.62 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=99.0
Q ss_pred eEEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEE-EEcCCCCCCCCCCHHHHHHHHHHHhCCCH
Q psy106 30 CMTVQ-KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSL 107 (321)
Q Consensus 30 sl~i~-~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~ 107 (321)
++++. .+.++.|.|||++||||+||.++...- ..++| |||-... ..+++.+++. .
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~------------maq~G~~vpa~~~--~~i~~~~~i~--~------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL------------MAKSGLPIPANEP--SEIPVFKEIF--A------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH------------HHHhCCCcccCCC--ccccccceEE--E-------
Confidence 45554 457899999999999999999963210 01222 3443310 0112222211 0
Q ss_pred HHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceE
Q psy106 108 QQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-HLLYLAESGRTI 185 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~~g~tI 185 (321)
..+.. ...+..+++|+||+|++.|++++ .+|.++|+|||++|+||.....+.. ++..+.+.|.++
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v 443 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI 443 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 01111 13457789999999999999998 8999999999999999999988865 666777779999
Q ss_pred EEecCChhHHhh-cCEEEEEeCCEEEE
Q psy106 186 LITTHYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 186 il~tH~l~~~~~-~drv~il~~G~i~~ 211 (321)
|++||+.+.+.. +++..++ ++.+..
T Consensus 444 IitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 444 IATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred EEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 999999988876 6655443 345444
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-15 Score=136.62 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPT-----SGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPt-----sgLD~~~~~~i~~ll~~l~~ 180 (321)
-|++++.||++++.+|+++++|||| +||||..++.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999863
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-15 Score=143.47 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=119.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-CeEEEE--------cCCCCCCCCC---CHHHHHH-HHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-KQLGFM--------PQQISLYPEF---TIDEMIC-YYG 100 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-~~ig~v--------~Q~~~l~~~l---tv~e~l~-~~~ 100 (321)
.+|++.|++|.||-||||-+++++|-.+|.-|.-.. +.+. .-++|. |+.+. ..++ .=-+++. ++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~l-e~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKIL-EDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhc-cccccCcCChHHHHHHHH
Confidence 489999999999999999999999999998775421 1110 011111 11100 0000 0001111 111
Q ss_pred HHhC-----CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy106 101 LIYG-----MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174 (321)
Q Consensus 101 ~~~~-----~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l 174 (321)
...+ +.....++...++.+...|+. .++-+.+||||+-||.+||.+.+++.++.++|||.+.||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0000 001111122344555555654 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEecCChhHHhh-cCEEEEEeC
Q psy106 175 LLYLAESGRTILITTHYIDEAKK-SHMIGLMRK 206 (321)
Q Consensus 175 l~~l~~~g~tIil~tH~l~~~~~-~drv~il~~ 206 (321)
|+.+...+.-||++.||++...+ .|-+.++..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998888899999999999988 899988864
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=129.44 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTL-LSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+.++++++.++++ +++|+++.|.|||||||||| +++++++.++. .++.|+..+
T Consensus 8 ~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-----------~~~~yi~~e---- 61 (230)
T PRK08533 8 LSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNG-----------YSVSYVSTQ---- 61 (230)
T ss_pred EEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-----------CcEEEEeCC----
Confidence 5677777777652 78999999999999999999 68889876542 224455422
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGI 163 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgL 163 (321)
.+..+.+..... .+...+ + ....-.+...+-. ..+|+++.++-.+++.+-. +|+++++||||+++
T Consensus 62 --~~~~~~~~~~~~-~g~~~~---~----~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 62 --LTTTEFIKQMMS-LGYDIN---K----KLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred --CCHHHHHHHHHH-hCCchH---H----HhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 244455443322 222111 1 1111111111212 2467776666555544433 69999999999999
Q ss_pred ----CHHHHHHHHHHHHHHHhCCceEEEecCChhHH--------hh-cCEEEEEe
Q psy106 164 ----DPVIAEEIWNHLLYLAESGRTILITTHYIDEA--------KK-SHMIGLMR 205 (321)
Q Consensus 164 ----D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~--------~~-~drv~il~ 205 (321)
|+..++++++.++.++++|.|+++ ||+.... +. ||-++.|+
T Consensus 131 ~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 131 SNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 888889999999999877887666 5554432 22 56566555
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=149.02 Aligned_cols=77 Identities=29% Similarity=0.299 Sum_probs=71.5
Q ss_pred CccChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeC
Q psy106 131 GSLSGGQQRRVSLAITLLHD----PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
..|||||+||++||++++.. |+++||||||+|||+..+..+.+.|+++.+ +.|||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 47899999999999999985 699999999999999999999999999874 8999999999998877999999998
Q ss_pred CE
Q psy106 207 GI 208 (321)
Q Consensus 207 G~ 208 (321)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=157.60 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=76.6
Q ss_pred ccCCCCccChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLLH----------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.++++.+|||||++||+||+||+. +|++||+||||+|||+.+...+++.|.++++.|++|+++||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 357899999999999999999986 8999999999999999999999999999987899999999999999
Q ss_pred hh-cCEEEEEeCC
Q psy106 196 KK-SHMIGLMRKG 207 (321)
Q Consensus 196 ~~-~drv~il~~G 207 (321)
.. ||+|.|++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 87 9999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=148.03 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCCccChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 129 KCGSLSGGQQRRVSLAITLL----------HDPELLILDEPT-SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~----------~~P~lllLDEPt-sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.|||++||+.+....
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQK 542 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchhh
Confidence 56899999999999999988 599999999998 789999999999999988 58999999999877777
Q ss_pred cCEEEEEeC-CEE
Q psy106 198 SHMIGLMRK-GIL 209 (321)
Q Consensus 198 ~drv~il~~-G~i 209 (321)
||++++|.+ |+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 999999986 544
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-14 Score=129.64 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=103.9
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE--E--CCccc----------CeEEEEcCCCCCCCCCCHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH--L--SITSK----------KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~--~--~g~~~----------~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
=+.+.+|+.++|+||+|+|||||++.+++......+++. + -+... ..+-++.+ ... +....
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~----~~~~~ 84 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDE----PPERH 84 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCC----CHHHH
Confidence 358899999999999999999999999998876533222 1 11110 11111111 110 11111
Q ss_pred HHHH-------HHH--hCCC----HHHHHHHHHHHHHHcCCccccCCCCccChHH--------HHHHHHHHHHhcCCCEE
Q psy106 96 ICYY-------GLI--YGMS----LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--------QRRVSLAITLLHDPELL 154 (321)
Q Consensus 96 l~~~-------~~~--~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--------kQRv~iA~aL~~~P~ll 154 (321)
.... ... .+.. -++..+..+..-+ .. ......+|||+ +||+++||++..++++.
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~e-v~----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNT-VV----PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhh-cc----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 1100 000 0100 0011111111111 11 12234579999 99999999999999999
Q ss_pred EEeCCCCCCCHHHHHH-HHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEE
Q psy106 155 ILDEPTSGIDPVIAEE-IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGIL 209 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~-i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i 209 (321)
+| ||+.+|+.+... ++ +.+++..+.|.|+.||.+.....+|.|.+|+.|++
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 99 999999654443 44 45555467899999999999999999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=137.74 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=111.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------------CeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------------KQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------------~~ig~v~Q~~~ 85 (321)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+|+.|.|.+.|++. +.|+++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4589999 99999999999999999999999999999999999998854321 35667764321
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccCh-HHHHHHHHHHHHhcCCCEEEEeCC--CCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG-GQQRRVSLAITLLHDPELLILDEP--TSG 162 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSg-GqkQRv~iA~aL~~~P~lllLDEP--tsg 162 (321)
+..+-.. +.. -.-..++.+.+. +.+-+ --..+++. -|-+| .++ +.+.|| |+|
T Consensus 225 -----~~~~r~~--~~~------~a~~iAEyfr~~-g~~Vl-l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G 279 (438)
T PRK07721 225 -----PALMRIK--GAY------TATAIAEYFRDQ-GLNVM-LMMDSVTRVAMAQR-EIG---------LAVGEPPTTKG 279 (438)
T ss_pred -----CHHHHHH--HHH------HHHHHHHHHHHC-CCcEE-EEEeChHHHHHHHH-HHH---------HhcCCCCcccc
Confidence 2211111 000 001122222222 32210 00112221 01111 111 123565 789
Q ss_pred CCHHHHHHHHHHHHHHH--hCCc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhH
Q psy106 163 IDPVIAEEIWNHLLYLA--ESGR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l~--~~g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~ 217 (321)
+||.....+.+++.++. ++|. ||++.+||+++ ..||++..|.+|+++.+++.++
T Consensus 280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 99999999999999987 3686 99999999995 4499999999999999998765
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=118.23 Aligned_cols=141 Identities=17% Similarity=0.077 Sum_probs=97.5
Q ss_pred EEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
+.|.||.|+|||||...++ ...+. | +++.|+.= +.|..+.+.... ..+.... .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g---~~v~~~s~------e~~~~~~~~~~~-~~g~~~~-------~l 56 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------G---EPGLYVTL------EESPEELIENAE-SLGWDLE-------RL 56 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------C---CcEEEEEC------CCCHHHHHHHHH-HcCCChH-------HH
Confidence 6789999999999887654 22221 1 22444431 234444443322 2243321 11
Q ss_pred HHHcCC-ccccCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEE
Q psy106 118 QALLHL-NHFKRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGID---PVIAEEIWNHLLYLAESGRTILI 187 (321)
Q Consensus 118 l~~~~l-~~~~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD---~~~~~~i~~ll~~l~~~g~tIil 187 (321)
...+. ...+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.+++..+++.|.|+|+
T Consensus 57 -~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~ 135 (187)
T cd01124 57 -EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLL 135 (187)
T ss_pred -HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEE
Confidence 12232 2356788899999998 5555666778999999999999999 88888899999999888999999
Q ss_pred ecCChhH---------Hhh-cCEEEEEe
Q psy106 188 TTHYIDE---------AKK-SHMIGLMR 205 (321)
Q Consensus 188 ~tH~l~~---------~~~-~drv~il~ 205 (321)
++|+... ++. ||.++.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998765 455 89998887
|
A related protein is found in archaea. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=141.75 Aligned_cols=76 Identities=29% Similarity=0.347 Sum_probs=70.1
Q ss_pred ccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 132 SLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 132 ~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
.|||||+||++||++++. +|+++|+|||++|||+.....+.+.|+++++ +.+||++||++..+..||+.+.++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 489999999999999997 6899999999999999999999999999864 69999999999988779999999875
Q ss_pred E
Q psy106 208 I 208 (321)
Q Consensus 208 ~ 208 (321)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=136.23 Aligned_cols=169 Identities=20% Similarity=0.122 Sum_probs=124.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
.++-+.+++.|..+ ..+++.+ |++.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+. .
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer----------g--- 194 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER----------G--- 194 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC----------c---
Confidence 46778888888754 4688885 9999999999999999999999999999999988866544432 1
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-------cCCCEEEEeCCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-------HDPELLILDEPT 160 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-------~~P~lllLDEPt 160 (321)
.++.|++.......++.. ...=....+.|.|+|+|++.+.+.+ .++-++++|+||
T Consensus 195 --~ev~e~~~~~l~~~gl~~----------------tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 195 --REVKDFIRKELGEEGMRK----------------SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred --ccHHHHHHHHhhhcccce----------------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 466665542211111100 0011345678999999999999988 799999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
...|+. +++...+.+....|.+..+.||....+++|-+ .++|.|.+..+
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 999996 66666666665458999999996555666443 36888876544
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=122.56 Aligned_cols=67 Identities=30% Similarity=0.394 Sum_probs=55.6
Q ss_pred CCCccChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 129 KCGSLSGGQQRRVSLAITLLHDP---ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+...+|.|+||.+.++.++...+ .++++|||-++|.|..++.+.+.|.++.+.+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35667999999999998888877 89999999999999999999999988766678899999998754
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=147.87 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=71.2
Q ss_pred cCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+...+.|||++||+.+....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4678899999999 5566678889999999999999999999999999999887668899999999987666999
Q ss_pred EEEEeC
Q psy106 201 IGLMRK 206 (321)
Q Consensus 201 v~il~~ 206 (321)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=124.66 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=87.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+-+|++|+.++|++++|.||||+||||+++++++..-.. .|.- +... ..+++++ ..++..+...|++...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~-~~~i~~~---~~i~~~~~~~d~~~~~-- 89 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAK-SMRLSLV---DRIFTRIGARDDIMKG-- 89 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCcc-ccEeccc---cEEEEecCcccccccC--
Confidence 56889999999999999999999999999999998643211 1110 0000 0111111 1112222222222110
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH-LLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~l-l~~l~~ 180 (321)
-++++ -+-++++-+...+.+|.++|+|||++|.||.....+... ++.+.+
T Consensus 90 ----------------------------~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~ 140 (218)
T cd03286 90 ----------------------------ESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK 140 (218)
T ss_pred ----------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHH
Confidence 01111 122222222233467999999999999999998888877 666766
Q ss_pred C-CceEEEecCChhHHhh
Q psy106 181 S-GRTILITTHYIDEAKK 197 (321)
Q Consensus 181 ~-g~tIil~tH~l~~~~~ 197 (321)
. +.++|++||+++.+..
T Consensus 141 ~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 141 KVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred hcCCcEEEEeccHHHHHH
Confidence 5 8999999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-14 Score=113.20 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=56.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCCCCCCCCCHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQISLYPEFTID 93 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~ 93 (321)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.+. +.++|+||+ ++ ..|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhHH
Confidence 45899999999999999999999999999999986 78999987653 346777777 33 34899
Q ss_pred HHHHH
Q psy106 94 EMICY 98 (321)
Q Consensus 94 e~l~~ 98 (321)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=136.03 Aligned_cols=112 Identities=29% Similarity=0.434 Sum_probs=98.4
Q ss_pred HcCCcc--ccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 120 LLHLNH--FKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 120 ~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+||+. ++|...+|||||.||+.||..+-.. -=+++||||+.||=+.--.++++.|+.|+..|-|+|+|.||.+.+
T Consensus 467 ~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti 546 (935)
T COG0178 467 DVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTI 546 (935)
T ss_pred HcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 356765 5899999999999999999999876 457899999999999999999999999999999999999999999
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHHhhcccccHHHHHHH
Q psy106 196 KKSHMIGLM------RKGILLEESPPKVLLEKYNMKSLEDVFLL 233 (321)
Q Consensus 196 ~~~drv~il------~~G~i~~~g~~~~l~~~~~~~~l~~~~~~ 233 (321)
..||+++=| +.|+|++.|+|+++++.. .++...|+.
T Consensus 547 ~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~--~SlTG~YLs 588 (935)
T COG0178 547 RAADHIIDIGPGAGEHGGEIVAEGTPEELLANP--ESLTGQYLS 588 (935)
T ss_pred hhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC--cchhhHhhc
Confidence 999999877 679999999999998753 356666644
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-14 Score=125.50 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
.++|.|+||||||||++.+++.+.+ .| +. ..||+.|+..........+ ....... . ...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~-------~~g~~~~~~~~~~~~~~~~-------~~~~~~~---~--~~~ 60 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YK-------VGGFYTEEVREGGKRIGFK-------IIDLDTG---E--EGI 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-Ce-------EEEEEcHHHHhcCCccceE-------EEEcCCC---C--eEE
Confidence 4789999999999999999876654 34 22 1455555321111111100 0000000 0 001
Q ss_pred HHHcCC-c--cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 118 QALLHL-N--HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 118 l~~~~l-~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
+...+. . ...+....+|++++-+..+++..+.+|+++++|| |+.++|+. +.+.+.++.+.|.++|+++|+-
T Consensus 61 l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 61 LARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred ccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch
Confidence 111221 1 1234556799999999999999999999999999 44455544 4555555556789999999995
Q ss_pred hHHhhcCEEEEEeCCEEEEe
Q psy106 193 DEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 193 ~~~~~~drv~il~~G~i~~~ 212 (321)
.....+|++..+.+|+|...
T Consensus 137 ~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hhHHHHHHHhccCCcEEEEE
Confidence 44455999999999999765
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-13 Score=145.09 Aligned_cols=80 Identities=29% Similarity=0.321 Sum_probs=73.6
Q ss_pred cCCCCccChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLH--------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK- 197 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~--------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~- 197 (321)
++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++.|+||+++||..+..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47899999999999999999996 899999999999999999999999999998889999999998888877
Q ss_pred cCEEEEEeC
Q psy106 198 SHMIGLMRK 206 (321)
Q Consensus 198 ~drv~il~~ 206 (321)
..+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777764
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=139.93 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=69.0
Q ss_pred CCCCccChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-ceEEEecCChhHHhhc
Q psy106 128 RKCGSLSGGQQRRVSL------AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES-G-RTILITTHYIDEAKKS 198 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~i------A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~-g-~tIil~tH~l~~~~~~ 198 (321)
.++..||||||+|++| |++++.+|++++|||||++||+..+..+.+++.... .. | .|||++|||.+.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 599999999999999999999999999999997643 33 3 4899999999988779
Q ss_pred CEEEEEe
Q psy106 199 HMIGLMR 205 (321)
Q Consensus 199 drv~il~ 205 (321)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=132.07 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=61.5
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEecCChhHHh----------hcCEEEEEeCCEEEEecChh
Q psy106 148 LHDPELLILDEPTSGI-DPVIAEEIWNHLLYLAESGRTILITTHYIDEAK----------KSHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 148 ~~~P~lllLDEPtsgL-D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~----------~~drv~il~~G~i~~~g~~~ 216 (321)
..+|+++++|||+.+| ||..++.+.+.++.+++.|.+++++||+++.+. .|++.++|.+|++...++.+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~ 729 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTRE 729 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence 5799999999999999 799999999999999888999999999999873 49999999999987666543
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=142.88 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=69.7
Q ss_pred cCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+.++..||||||||++||++++ .+|+++||||||++||+.++..+.++|.++++ +.++|++||+++.+..||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhHe
Confidence 4678899999999999999985 67899999999999999999999999999864 478999999999887799987
Q ss_pred EEe
Q psy106 203 LMR 205 (321)
Q Consensus 203 il~ 205 (321)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 554
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-12 Score=121.90 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=96.5
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH
Q psy106 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ 108 (321)
Q Consensus 29 isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~ 108 (321)
+++.+..|+.++|.||+|||||||+++|+++++|+.|.+.+.... .+. +.. ++ .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~--El~--~~~----~~------~------------ 190 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR--EIF--LPH----PN------Y------------ 190 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc--ccC--CCC----CC------E------------
Confidence 457788999999999999999999999999999988876653211 000 000 00 0
Q ss_pred HHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEe
Q psy106 109 QIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILIT 188 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~ 188 (321)
..+........ ++.....-.++.+|-++|+++++|||.+ .+.+++++.+...+.+++.+
T Consensus 191 ------------~~l~~~~~~~~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T 249 (308)
T TIGR02788 191 ------------VHLFYSKGGQG--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITT 249 (308)
T ss_pred ------------EEEEecCCCCC--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEE
Confidence 00000000000 1111122356778889999999999996 34567776665333467999
Q ss_pred cCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 189 THYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 189 tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
+|..+.....+|+..|..|++...|.+.+..
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 9999966669999999889988888877665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-12 Score=142.10 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=63.0
Q ss_pred CCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCceEEEecCChhHHh
Q psy106 128 RKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESGRTILITTHYIDEAK 196 (321)
Q Consensus 128 ~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-----~~g~tIil~tH~l~~~~ 196 (321)
...+.||+|||| |++||+|++.+|++|+|||||+|||+.+...+.+.|..+. ..|.|||++|||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 9999999999999999999999999999999999888763 24789999999999985
Q ss_pred h
Q psy106 197 K 197 (321)
Q Consensus 197 ~ 197 (321)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 3
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-12 Score=106.48 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=83.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
++.|.||||+||||+++.+++...+..+.+ .|+..+....+ ..+... .. .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v----------~~~~~e~~~~~---~~~~~~------~~-------~~~~~ 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV----------VYVDIEEEIEE---LTERLI------GE-------SLKGA 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE----------EEEECCcchHH---HHHHHh------hh-------hhccc
Confidence 368999999999999999998876654444 44444332111 111110 00 00000
Q ss_pred HHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCceEEE
Q psy106 118 QALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS----------GIDPVIAEEIWNHLLYLAESGRTILI 187 (321)
Q Consensus 118 l~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts----------gLD~~~~~~i~~ll~~l~~~g~tIil 187 (321)
.+ ............+..+.++.+.+++...+|+++++|||++ +.|+...+.+.++....++.+.|+++
T Consensus 55 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~ 132 (165)
T cd01120 55 LD--NLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIF 132 (165)
T ss_pred cc--cEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEE
Confidence 00 1111122333456667778899999999999999999994 55656667777777666667999999
Q ss_pred ecCChhHH
Q psy106 188 TTHYIDEA 195 (321)
Q Consensus 188 ~tH~l~~~ 195 (321)
++|.....
T Consensus 133 ~~~~~~~~ 140 (165)
T cd01120 133 TLQVPSGD 140 (165)
T ss_pred EEecCCcc
Confidence 99977543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=126.04 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=101.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
++++.++.+++|++++|+|||||||||++..|++.+.+..|. ++|+++.++. ...++.|++.+++..++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------SKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------CeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 566778888999999999999999999999999987766653 2578999886 34789999999888877
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-cCCCCccChHHHH-HHHHHHHHhcCC-----CEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 105 MSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQR-RVSLAITLLHDP-----ELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~-~~~~~~LSgGqkQ-Rv~iA~aL~~~P-----~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+........+....+.++... ...+.+.+.+++. .+.-..+++.++ .+|+||.++.+ ..+.+.++.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~ 387 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA 387 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence 6543333333344444555432 3456664444432 233444555555 68999999887 344555555
Q ss_pred HHhCCceEEEecC
Q psy106 178 LAESGRTILITTH 190 (321)
Q Consensus 178 l~~~g~tIil~tH 190 (321)
....+.+=++.|+
T Consensus 388 f~~~~~~g~IlTK 400 (484)
T PRK06995 388 YRGPGLAGCILTK 400 (484)
T ss_pred hccCCCCEEEEeC
Confidence 5555666566666
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=107.89 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=68.4
Q ss_pred cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
.+.....|.||-=---+.+.+ ++--++|||||-++|.|.-|.+++..|+++++.|.-+||+||.+=.+.. --+|+-++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 345678899997666666655 4668999999999999999999999999999999999999999988766 66788777
Q ss_pred CCEE
Q psy106 206 KGIL 209 (321)
Q Consensus 206 ~G~i 209 (321)
.+-+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 6643
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=131.59 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCccChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEecCChhHH
Q psy106 129 KCGSLSGGQQR------RVSLAITLLHD-----P-ELLILDEPTSGIDPVIAEEIWNHLLYLAESGR-TILITTHYIDEA 195 (321)
Q Consensus 129 ~~~~LSgGqkQ------Rv~iA~aL~~~-----P-~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~-tIil~tH~l~~~ 195 (321)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|.++...|. +||++|||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 99999999864 3 67999999999999999999999999876664 799999999999
Q ss_pred hhcCEEEEEeCC
Q psy106 196 KKSHMIGLMRKG 207 (321)
Q Consensus 196 ~~~drv~il~~G 207 (321)
..||+++.|...
T Consensus 858 ~~ad~~~~~~~~ 869 (880)
T PRK02224 858 GAADDLVRVEKD 869 (880)
T ss_pred HhcCeeEEeecC
Confidence 779999999743
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=134.04 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEE
Q psy106 128 RKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGL 203 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~i 203 (321)
+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.+ +.++|++||+...+..||+++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeEe
Confidence 4577999999999999999985 7899999999999999999999999998764 4789999999987777999987
Q ss_pred EeC
Q psy106 204 MRK 206 (321)
Q Consensus 204 l~~ 206 (321)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=105.85 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=87.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT-GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
=+++|.++.|.||+|||||||...++ +..+ .. .++.|+..+. +..+.+.-. ..++....+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g----------~~~~y~~~e~------~~~~~~~~~-~~~g~~~~~- 81 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG----------KKVYVITTEN------TSKSYLKQM-ESVKIDISD- 81 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC----------CEEEEEEcCC------CHHHHHHHH-HHCCCChhH-
Confidence 48899999999999999999998875 2222 12 2344554422 333332211 122222111
Q ss_pred HHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCceE
Q psy106 111 KEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEPTSG---IDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~--~P~lllLDEPtsg---LD~~~~~~i~~ll~~l~~~g~tI 185 (321)
......+..... .-......|.++++.+..+..++. +|+++++||||+. .|+....++++.++.++++|.|+
T Consensus 82 -~~~~g~l~i~~~--~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tv 158 (234)
T PRK06067 82 -FFLWGYLRIFPL--NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTI 158 (234)
T ss_pred -HHhCCCceEEec--cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEE
Confidence 000000011111 112234567899999999999998 9999999999964 55555556666677767779999
Q ss_pred EEecCChhH
Q psy106 186 LITTHYIDE 194 (321)
Q Consensus 186 il~tH~l~~ 194 (321)
++++|+...
T Consensus 159 llt~~~~~~ 167 (234)
T PRK06067 159 LITLHPYAF 167 (234)
T ss_pred EEEecCCcC
Confidence 999997654
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=101.92 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++.|.||+||||||+++.+++.+.+. .|.|.....+. -|..+... + + .. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E~~~~~~~-----~------~---i~---q--------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---EFVHESKR-----S------L---IN---Q--------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---cccccCcc-----c------e---ee---e---------
Confidence 68899999999999999998887643 45554322111 11111000 0 0 00 0
Q ss_pred HHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 117 ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
...+ .....++. ++++||.++|+++++|||. |++.... .+ +.+..|.+++.++|..+..+
T Consensus 54 --~~vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~---~l-~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 54 --REVG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL---AL-TAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred --cccC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH---HH-HHHHcCCEEEEEecCCcHHH
Confidence 0000 01112221 5889999999999999996 6554332 22 34567999999999998776
Q ss_pred hcCEEEEEe
Q psy106 197 KSHMIGLMR 205 (321)
Q Consensus 197 ~~drv~il~ 205 (321)
.++|++.+-
T Consensus 114 ~~~Rl~~l~ 122 (198)
T cd01131 114 TIDRIIDVF 122 (198)
T ss_pred HHhHHHhhc
Confidence 688876553
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-12 Score=127.42 Aligned_cols=151 Identities=18% Similarity=0.242 Sum_probs=94.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCccEEEECCccc--------CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCI--TGQNVLNGGNIHLSITSK--------KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l--~Gl~~p~~G~I~~~g~~~--------~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
=+++|.++.|.||+|||||||...+ .|+.++....+++..... +.+|+-+++..--. ++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g------~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG------KLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC------ceEE---
Confidence 4789999999999999999999876 465554444455432211 22333222110000 0000
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLA--ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA--~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...... .......+.++++. .++...++|+|++|||.|+ .+|...|+.. +..++.++++++.+
T Consensus 88 -~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 88 -LDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL 153 (484)
T ss_pred -EecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence 000000 00001122233332 4566788999999999999 6666665544 57788899999999
Q ss_pred HhCCceEEEecCChhH--------H-hh-cCEEEEEe
Q psy106 179 AESGRTILITTHYIDE--------A-KK-SHMIGLMR 205 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~--------~-~~-~drv~il~ 205 (321)
++.|.|+|++||+.++ + +. ||.|+.|+
T Consensus 154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8889999999998864 2 45 89999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-10 Score=116.36 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=44.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEECCccc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIHLSITSK 74 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~~g~~~ 74 (321)
.+|++|||++++||+++|+|||||||||||| +|+.+|++| +|.++|.+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 5899999999999999999999999999999 788888888 799998653
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-10 Score=102.81 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l 117 (321)
++||.||||||||||.++|++++ .+|. +.+++++. ++..++..+........+..+.....+...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------~~v~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------VVIISQDS-YYKDLSHEELEERKNNNYDHPDAFDFDLLISH 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------eEEEEecc-cccccccccHHHhccCCCCCCCcccHHHHHHH
Confidence 58999999999999999999987 2333 34455443 23233333322221111111111111222233
Q ss_pred HHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy106 118 QALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166 (321)
Q Consensus 118 l~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~ 166 (321)
+..+... ..+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 68 l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 68 LQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 3333332 2567788999999887655 57889999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=105.34 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=106.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------------CeEEEEcCCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------------KQLGFMPQQISL 86 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------------~~ig~v~Q~~~l 86 (321)
..+++++ |++.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|... ++..++.....
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 4689999 99999999999999999999999999999999888766544321 12222221111
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccCh-HHHHHHHHHHHHhcCCCEEEEeCC--CCCC
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSG-GQQRRVSLAITLLHDPELLILDEP--TSGI 163 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSg-GqkQRv~iA~aL~~~P~lllLDEP--tsgL 163 (321)
.+..+-.. +... .-..++.+.+. |.+-+ -...+|+. -|-+| .++ +.+.|| +.|.
T Consensus 229 ---~~p~~r~~--~~~~------a~t~AE~frd~-G~~Vl-l~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gy 285 (440)
T TIGR01026 229 ---QSPLLRLK--GAYV------ATAIAEYFRDQ-GKDVL-LLMDSVTRFAMAQR-EIG---------LAAGEPPATKGY 285 (440)
T ss_pred ---CCHHHHHH--HHHH------HHHHHHHHHHC-CCCEE-EEEeChHHHHHHHH-HHH---------HhcCCCCccccc
Confidence 11211110 0000 01122222222 22110 01122221 11122 122 345676 5599
Q ss_pred CHHHHHHHHHHHHHHHhCCc-------eEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 164 DPVIAEEIWNHLLYLAESGR-------TILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~~g~-------tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
||.....+.+++.+....+. ||++.+||+ .+. ||++..+.+|+++.+.+.++.
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence 99999999999988876667 899999998 344 899999999999999887664
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=84.53 Aligned_cols=118 Identities=31% Similarity=0.345 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
++..+.|.||+|+||||+++.++....... +-+.++.. .... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~-----------~~~~-~-~~~~~~----------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE-----------DILE-E-VLDQLL----------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE-----------Eccc-c-CHHHHH-----------------
Confidence 367899999999999999999999887654 23333211 1100 0 110000
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCceEEE
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN------HLLYLAESGRTILI 187 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~------ll~~l~~~g~tIil 187 (321)
...........++++..+..+++|--.+|+++++||+..-.+......... ........+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 001223345678888888889988888899999999999999888776654 22222345788899
Q ss_pred ecCC
Q psy106 188 TTHY 191 (321)
Q Consensus 188 ~tH~ 191 (321)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 9884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-10 Score=108.99 Aligned_cols=63 Identities=29% Similarity=0.367 Sum_probs=57.7
Q ss_pred CccChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 131 GSLSGGQQRRVSLAITLLH---------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~---------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
..+|.||||+++||.+|+. +|+++|||||+++||+..+..+++.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999999753 679999999987653
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=117.58 Aligned_cols=79 Identities=33% Similarity=0.409 Sum_probs=71.6
Q ss_pred CCCCccChHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcC
Q psy106 128 RKCGSLSGGQQRRVSLAITLL------HD--PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~aL~------~~--P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~d 199 (321)
+++.+|||||+=.++||.+|+ .+ -++++|||||..||+.....+++.|..+...+.+|++|||+-++.+++|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 678999999999888877765 35 7999999999999999999999999999877999999999999999999
Q ss_pred EEEEEeC
Q psy106 200 MIGLMRK 206 (321)
Q Consensus 200 rv~il~~ 206 (321)
+++.++.
T Consensus 891 ~~i~V~k 897 (908)
T COG0419 891 VRIRVKK 897 (908)
T ss_pred eEEEEEe
Confidence 9888865
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-10 Score=102.73 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
-+++|+++.|.||+|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999988665
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=108.56 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=66.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---c---------------cCeEEEEcCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---S---------------KKQLGFMPQQI 84 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~---------------~~~ig~v~Q~~ 84 (321)
..+++++ |++.+|+.++|+||||||||||+++|+|+.+|+.+.+-..|. + +..++++||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4599999 999999999999999999999999999999988643322221 1 13689999999
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q psy106 85 SLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~ 103 (321)
..+..+++.+++.+.+.++
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999988776654
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-09 Score=96.26 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=58.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc------cCeEEEEcCCC--CCCCCCCHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------KKQLGFMPQQI--SLYPEFTIDEMI 96 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------~~~ig~v~Q~~--~l~~~ltv~e~l 96 (321)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+.. ...+++++|.. ..++..+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3445667889999999999999999999999999999999999986532 13456665543 345667887777
Q ss_pred HHHHH
Q psy106 97 CYYGL 101 (321)
Q Consensus 97 ~~~~~ 101 (321)
....+
T Consensus 94 ~~~lR 98 (186)
T cd01130 94 RSALR 98 (186)
T ss_pred HHHhc
Confidence 65444
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=104.82 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=65.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc---c----------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT---S---------- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~---~---------- 73 (321)
+.++.+++++.|..+ ..+++.++ ++.+|+.++|+||||||||||+++|+++.+|+.|.+.+.|+ +
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 468999999999754 56899996 99999999999999999999999999999999998887542 1
Q ss_pred ---cCeEEEEcCCCC
Q psy106 74 ---KKQLGFMPQQIS 85 (321)
Q Consensus 74 ---~~~ig~v~Q~~~ 85 (321)
.+.|++++|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 146999999653
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=95.78 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=39.7
Q ss_pred HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHh-CCceEEEecCChh
Q psy106 146 TLLHDPELLILDEPTS------GIDPVIAEEIWNHLLYLAE-SGRTILITTHYID 193 (321)
Q Consensus 146 aL~~~P~lllLDEPts------gLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~ 193 (321)
+...+|+++++| |++ .+|+.....+++.+.++++ .|.||++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 775 4799999999999999874 5999999999863
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=101.92 Aligned_cols=50 Identities=30% Similarity=0.465 Sum_probs=45.3
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 146 TLLHDPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+..+|.++++|||...|| |..++.+.+.++..++.|.+++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3556899999999999999 9999999999999988899999999999774
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=109.51 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=84.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
.+=+|+++. +.+.++.|.|||.+||||+||.++-.. -..-| .|||-+.. .+++.+.+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G------------~~VPa~~a---~i~~~d~I~----- 654 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG------------SFVPAESA---RIGIVDRIF----- 654 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC------------Cceeccce---EecccCeee-----
Confidence 456778887 778899999999999999999986321 11111 12232211 011111110
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEP---TSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~--~P~lllLDEP---tsgLD~~~~~~i~~ll~~ 177 (321)
-+.|. .|.....+|--|.....++.+|-. ++.++|+||| |+.+|.. ...+.++..
T Consensus 655 ----------------triga--~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~ 714 (854)
T PRK05399 655 ----------------TRIGA--SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEY 714 (854)
T ss_pred ----------------eccCc--ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHH
Confidence 00111 122334567777777777777665 8999999999 8888843 446667777
Q ss_pred HHhC-CceEEEecCChhHHhhcC
Q psy106 178 LAES-GRTILITTHYIDEAKKSH 199 (321)
Q Consensus 178 l~~~-g~tIil~tH~l~~~~~~d 199 (321)
+.+. +.+++++||+.+..+.++
T Consensus 715 l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 715 LHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHhcCCceEEEEechHHHHHHhh
Confidence 7655 589999999966554344
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=104.79 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=50.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGI-DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgL-D~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
|++++..+|+++++|||+.+| ||..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 7999999999999998889999999999998753
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.6e-09 Score=116.87 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=56.5
Q ss_pred cCCCCccChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh
Q psy106 127 KRKCGSLSGGQQRRVS----LAIT--------LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~----iA~a--------L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~ 193 (321)
+++++.||||||||++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++||+||.+-
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccchh
Confidence 4457899999999996 5655 55899999999999999999999999999887 789999999874
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=89.09 Aligned_cols=66 Identities=29% Similarity=0.431 Sum_probs=60.5
Q ss_pred CccChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 131 GSLSGGQQRRVSLAITLLH--DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~~--~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
.+||-|+.+-+++|.+|.. .|.+++||||-++|=|..-..+.+++++.++.+ -|+++||..+.+..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhh
Confidence 4999999999999999997 599999999999999999999999999987655 79999999999864
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=99.41 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=62.4
Q ss_pred CccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 131 GSLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
.-+|+|||+++++|..|+ .+|++++||||+++||+..+..+.+.|.... .++|.+|+ ...-||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~---~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE---APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC---CCCCCceE
Confidence 468999999999999999 8999999999999999999999998885432 34444442 22349999
Q ss_pred EEEeCCEEEEecC
Q psy106 202 GLMRKGILLEESP 214 (321)
Q Consensus 202 ~il~~G~i~~~g~ 214 (321)
+.+.+|++.-+.+
T Consensus 336 ~~~~~~~~~~~~~ 348 (349)
T PRK14079 336 LRIEAGVFTPEAP 348 (349)
T ss_pred EEEeccEecCCCC
Confidence 9999998754443
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-08 Score=94.49 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=71.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
.++.++.|.||+||||||+++++.+.+.+ .++.|.....+.. |. +++ .. .
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---~~------~~~--------------~~------~ 170 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---YV------HRN--------------KR------S 170 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---hh------ccC--------------cc------c
Confidence 46889999999999999999999987653 3555543211100 00 000 00 0
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
...... .... ..+ -.-++++||-++|+++++||+. |+.+....++ .+..|.+++.+.|-.
T Consensus 171 ----~i~q~e---vg~~--~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 171 ----LINQRE---VGLD--TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTN 230 (343)
T ss_pred ----eEEccc---cCCC--CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCC
Confidence 000000 0000 011 1234678899999999999997 8887754433 346799999999986
Q ss_pred hHHhhcCEE
Q psy106 193 DEAKKSHMI 201 (321)
Q Consensus 193 ~~~~~~drv 201 (321)
+-....+|+
T Consensus 231 ~~~~~~~Rl 239 (343)
T TIGR01420 231 SAAQTIERI 239 (343)
T ss_pred CHHHHHHHH
Confidence 555434444
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-08 Score=108.99 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHH-HHHHHHHHhCCC
Q psy106 29 LCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDE-MICYYGLIYGMS 106 (321)
Q Consensus 29 isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e-~l~~~~~~~~~~ 106 (321)
++++.++++++||+||+|+|||||++++.+.+ ...+|.+++++.... +....+...+..+ +....
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~------~~~~~~~~~~~~~~~~~~~------- 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS------KSMEIYSSANPDDYNMKLH------- 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc------cchhhcccccccccchhHH-------
Confidence 46778899999999999999999999996544 445788887642211 1111111000000 10000
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCc
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA---ESGR 183 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~---~~g~ 183 (321)
-.++....+++..++ .+..+ ++.|+| |..++-+++||+- |.. ..++.+.... ..|.
T Consensus 267 --l~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 267 --LQRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGS 325 (1153)
T ss_pred --HHHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCc
Confidence 001122222222221 22233 556665 4466778888983 333 3345554432 3589
Q ss_pred eEEEecCChhHHhh--cCEEEEEe
Q psy106 184 TILITTHYIDEAKK--SHMIGLMR 205 (321)
Q Consensus 184 tIil~tH~l~~~~~--~drv~il~ 205 (321)
+||++|||...+.. +|+++-+.
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEec
Confidence 99999999999854 68776553
|
syringae 6; Provisional |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=4e-08 Score=82.48 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHH--cCCCCCccEEEECCcc----cCeEEEEcCC-CCCCCC---CCHHHHHH-----HHH---
Q psy106 39 YSLLGASGCGKTTLLSCIT--GQNVLNGGNIHLSITS----KKQLGFMPQQ-ISLYPE---FTIDEMIC-----YYG--- 100 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~--Gl~~p~~G~I~~~g~~----~~~ig~v~Q~-~~l~~~---ltv~e~l~-----~~~--- 100 (321)
++++|++|||||||++.|+ +..++.+|+....... ... .+.+-+ +.+... ....+... +..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999999999999 6777666654221000 000 111111 111100 00111111 000
Q ss_pred ------HH--hCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCH
Q psy106 101 ------LI--YGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITL-----LHDPELLILDEPTSGIDP 165 (321)
Q Consensus 101 ------~~--~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL-----~~~P~lllLDEPtsgLD~ 165 (321)
.. ...........+...+...+... ...+...+|++++++.....+. ...|+++ |+|++|+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence 00 00011122223334444444331 2345677899988887666552 3456666 9999999
Q ss_pred HHHHHHHHHHHHH
Q psy106 166 VIAEEIWNHLLYL 178 (321)
Q Consensus 166 ~~~~~i~~ll~~l 178 (321)
.+..++++.|.++
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-08 Score=87.70 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH--Hhh-cCEEEEEeC
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE--AKK-SHMIGLMRK 206 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~--~~~-~drv~il~~ 206 (321)
|+-+|..||.++..+|+.+..+| +.+||..++++.+.+.+..++|.+|++.+|.+.+ +.. ||++++++.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999988877 8899999999999998876667899999999976 444 999988764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=94.51 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcc---c------------CeEEEE-----c
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITS---K------------KQLGFM-----P 81 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~---~------------~~ig~v-----~ 81 (321)
..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.+.+.|+. . .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3588988 99999999999999999999999999998854 44666654421 1 235566 8
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcCCc-----c-ccCCCCccC
Q psy106 82 QQIS--LYPEFTIDEMICYYGLIYGMS---LQQIKEKAEYLQALLHLN-----H-FKRKCGSLS 134 (321)
Q Consensus 82 Q~~~--l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~ll~~~~l~-----~-~~~~~~~LS 134 (321)
|++. +.+.+ +...+.-+.+.++.. ..+...+..++++..++. . ...+++.||
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 8763 33333 333333222333322 133445666677777762 1 245555555
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-07 Score=95.28 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHH--HHHHHHHHHhCCCHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTID--EMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~--e~l~~~~~~~~~~~~~~~~ 112 (321)
..+.++|+|||||||||+.+++.+..++..|+-... ...|+..+..-++ .... .+-.+ +...+....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~-----~~~fv~i~~~~l~-~d~~~i~~~ll-----g~~~~~~~~ 242 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE-----DAPFVEVDGTTLR-WDPREVTNPLL-----GSVHDPIYQ 242 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC-----CCCeEEEechhcc-CCHHHHhHHhc-----CCccHHHHH
Confidence 446799999999999999999999887655431100 0112221111111 0111 11111 111111122
Q ss_pred HHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+...++..++.. .+..+.++||| +|+||| +..||+..+..+.+.+.+
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 3334456677654 56778899999 999999 799999999999999865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=79.69 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=70.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH--------cCCCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT--------GQNVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~--------Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
+-+|+.++-....+..|.|||.+||||+||.++ |..-|- +.++.+.+.. ...+..+..+....|-
T Consensus 32 v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I---~t~~~~~d~~~~~~S~--- 105 (235)
T PF00488_consen 32 VPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRI---FTRIGDDDSIESGLST--- 105 (235)
T ss_dssp --EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEE---EEEES---SSTTSSSH---
T ss_pred ecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEE---Eeeccccccccccccc---
Confidence 446655544444599999999999999999985 655553 3333322111 1122222222222221
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-H
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN-H 174 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-l 174 (321)
|.. +. .++..+++ -+.+..++|+||+..|=++.....+.. .
T Consensus 106 --F~~--------E~-~~~~~il~---------------------------~~~~~sLvliDE~g~gT~~~eg~ai~~ai 147 (235)
T PF00488_consen 106 --FMA--------EM-KRLSSILR---------------------------NATEKSLVLIDELGRGTNPEEGIAIAIAI 147 (235)
T ss_dssp --HHH--------HH-HHHHHHHH---------------------------H--TTEEEEEESTTTTSSHHHHHHHHHHH
T ss_pred --HHH--------hH-HHHHhhhh---------------------------hcccceeeecccccCCCChhHHHHHHHHH
Confidence 111 11 11111111 123567899999999999998877665 4
Q ss_pred HHHHHh-CCceEEEecCChhHHh
Q psy106 175 LLYLAE-SGRTILITTHYIDEAK 196 (321)
Q Consensus 175 l~~l~~-~g~tIil~tH~l~~~~ 196 (321)
+..+.+ .+..++++||+.+..+
T Consensus 148 le~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 148 LEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHTTT-EEEEEES-GGGGG
T ss_pred HHHHHHhccccEEEEeccchhHH
Confidence 555666 4888999999998764
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=95.47 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=50.0
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHHh----------hcCEEEEEeCC
Q psy106 147 LLHDPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEAK----------KSHMIGLMRKG 207 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~----------~~drv~il~~G 207 (321)
+-.+|+++++|||+.+|| |..+..+.+.++..++.|.+++++||+++.+. .|+..++|.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 345899999999999999 78899999999999888999999999997542 35655555543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=83.37 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=44.9
Q ss_pred HHHHHHcCCcc--ccCCCCccChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 115 EYLQALLHLNH--FKRKCGSLSGGQQRRVS--LAITLLH-DPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 115 ~~ll~~~~l~~--~~~~~~~LSgGqkQRv~--iA~aL~~-~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
...++..+... .-.++..+|+|++|++. +++.+-. +++++ |+|++|+.+.+++.+.|.++.++
T Consensus 128 ~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 128 IEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445555542 34567789999999987 5555544 34443 99999999999999999887654
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-08 Score=85.19 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+||+++++|||||||||++++|+|++.+ +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence 6999999999999999999999999877 4566543
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=92.01 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=78.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
=+.+|+++.|.|++|+|||||+..++.......+. +-|+.-+. +..+ +..-+...+...+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k----------vlYvs~EE------s~~q-i~~ra~rlg~~~~--- 149 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK----------VLYVSGEE------SLQQ-IKMRAIRLGLPEP--- 149 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc----------EEEEECcC------CHHH-HHHHHHHcCCChH---
Confidence 48899999999999999999999988755443333 33433221 2222 1111111111100
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHH-hC
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID---------PVIAEEIWNHLLYLA-ES 181 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD---------~~~~~~i~~ll~~l~-~~ 181 (321)
.+.+ . .+.+-. +-...+ --.+|+++++|.-++=.. +...+++...|.+++ +.
T Consensus 150 --------~l~~--~----~e~~~~--~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~ 211 (454)
T TIGR00416 150 --------NLYV--L----SETNWE--QICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTR 211 (454)
T ss_pred --------HeEE--c----CCCCHH--HHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 0000 0 011111 111111 225899999998754211 223445555566664 67
Q ss_pred CceEEEecCChhH--------Hhh-cCEEEEEeCCE
Q psy106 182 GRTILITTHYIDE--------AKK-SHMIGLMRKGI 208 (321)
Q Consensus 182 g~tIil~tH~l~~--------~~~-~drv~il~~G~ 208 (321)
|.|+++++|...+ ++. ||.|+.|+.++
T Consensus 212 giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 212 GIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred CCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 9999999997654 456 99999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-07 Score=85.62 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=45.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccE----EEECCcc-----cCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN----IHLSITS-----KKQLGFMPQQISLYPEFTIDEMICYY 99 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~----I~~~g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~~~ 99 (321)
.+..++||.||||||||||+++|++++++++|. +.+++.. ....|++++.. .++.+++.+...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l 104 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALL 104 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHH
Confidence 456799999999999999999999999999998 4333321 13356666532 33455665554443
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-07 Score=89.93 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEE---CCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHL---SITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~---~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
=.++||.||||||||||+++|.+++. |++|+|.+ +|... ++.|++ |...+++.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999987 77888765 33211 335543 666666677777766654433
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-06 Score=76.41 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=80.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH-H
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-I 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~ 102 (321)
+.|+++.--+.+|+++.|.||+|+||||++..++--.....| .++.|+.-+ ++..+....... .
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g---------~~vl~iS~E------~~~~~~~~r~~~~~ 82 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG---------VRVGTISLE------EPVVRTARRLLGQY 82 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC---------ceEEEEEcc------cCHHHHHHHHHHHH
Confidence 468888888999999999999999999999887643322211 223443321 122222211111 0
Q ss_pred hC-----------CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG-----------MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~-----------~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ ....+..+.++.+.+ .+.-.........+ ...-+..++.++ .+|+++++|.++.-.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~ 159 (271)
T cd01122 83 AGKRLHLPDTVFIYTLEEFDAAFDEFEG-TGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS 159 (271)
T ss_pred hCCCcccCCccccccHHHHHHHHHHhcC-CCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCc
Confidence 11 111111111222211 01001111122222 234445555554 47999999998664433
Q ss_pred ---H-HHHHHHHHHHHHH-hCCceEEEecCC
Q psy106 166 ---V-IAEEIWNHLLYLA-ESGRTILITTHY 191 (321)
Q Consensus 166 ---~-~~~~i~~ll~~l~-~~g~tIil~tH~ 191 (321)
. ....++..|++++ +.+.||++++|-
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 1 2345666677775 569999999984
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-07 Score=74.22 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 114 (321)
.+..+.|.||.|+||||+++.++......... +-++..... .. +. ....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~----------v~~~~~~~~-~~-----~~-~~~~-------------- 66 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAP----------FLYLNASDL-LE-----GL-VVAE-------------- 66 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCC----------eEEEehhhh-hh-----hh-HHHH--------------
Confidence 57889999999999999999999877522221 222221110 00 00 0000
Q ss_pred HHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEec
Q psy106 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-----SGRTILITT 189 (321)
Q Consensus 115 ~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-----~g~tIil~t 189 (321)
.... . .+......+...+|.++++||.-.. ++.....+.+.+.+... .+.++|++|
T Consensus 67 --~~~~------~----------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 67 --LFGH------F----------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred --Hhhh------h----------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 0000 0 5566667777889999999998765 66677788888877653 578899998
Q ss_pred CChh
Q psy106 190 HYID 193 (321)
Q Consensus 190 H~l~ 193 (321)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 8654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=77.91 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=43.2
Q ss_pred cCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhCCceEEEecCCh---------hHHhh-cCEEEEEe
Q psy106 149 HDPELLILDEPTS------GIDPVIAEEIWNHLLYLAESGRTILITTHYI---------DEAKK-SHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPts------gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l---------~~~~~-~drv~il~ 205 (321)
.+|+.+++| |.+ +.|+..+..+.++++.+++.|.|+++++|.- ..++. ||.+++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368999999 433 4455567788899999988899999999952 33455 99999985
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=72.55 Aligned_cols=51 Identities=35% Similarity=0.509 Sum_probs=39.2
Q ss_pred cCCCCccChHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 127 KRKCGSLSGGQQR-RVSLAIT------LLH------DPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 127 ~~~~~~LSgGqkQ-Rv~iA~a------L~~------~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+..+++|||||| .+.+|.+ +.. .|++++|||||++||+..++.+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4677899999995 3333333 333 3799999999999999999999999864
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-07 Score=92.78 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.++.++++..+..+ ..+++++ |++.+|+.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47778888888533 5699999 9999999999999999999999999999999999887776654
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-07 Score=87.34 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
.++..|..+ ..+++++ |++.+|+.++|+||||+|||||+++|+|...|+.|.+..-|+
T Consensus 48 ~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 48 PIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred cceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 344555443 5699999 999999999999999999999999999999999887766443
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-07 Score=94.51 Aligned_cols=62 Identities=21% Similarity=0.102 Sum_probs=56.3
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK 74 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 74 (321)
+.|+++.||. ..+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+.....
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4588999987 5699999999999999999999999999999999999999999998876543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-07 Score=87.38 Aligned_cols=70 Identities=23% Similarity=0.402 Sum_probs=50.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
.++++.++.+++|++++|+||||+||||++..|++......|. ++|+++..+.. .....|.+..++...
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~--------~~V~lit~D~~---R~ga~EqL~~~a~~~ 193 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA--------SKVALLTTDSY---RIGGHEQLRIFGKIL 193 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CeEEEEecccc---cccHHHHHHHHHHHc
Confidence 4677888999999999999999999999999999764222221 35777775543 235667776655444
Q ss_pred C
Q psy106 104 G 104 (321)
Q Consensus 104 ~ 104 (321)
+
T Consensus 194 g 194 (374)
T PRK14722 194 G 194 (374)
T ss_pred C
Confidence 3
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-07 Score=89.38 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=52.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc---cEEEECCccc-------------CeEEEEcCCCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG---GNIHLSITSK-------------KQLGFMPQQIS 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~---G~I~~~g~~~-------------~~ig~v~Q~~~ 85 (321)
..+++++ +++.+||.++|+||||+|||||+++|++...++. |.|-.++.+. +++++|+....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 4699999 9999999999999999999999999999998886 7777666532 56788876543
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-07 Score=89.23 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=46.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
++|++++++|||||||||++..|++.+.+.+++|.+.+.+. ..+.+++|.....+..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 57999999999999999999999999998888998754432 346677765444443333443
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-07 Score=85.13 Aligned_cols=29 Identities=38% Similarity=0.334 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++|+++||.||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.9e-07 Score=89.49 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEE
Q psy106 14 AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLG 78 (321)
Q Consensus 14 l~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig 78 (321)
++..+..+ ..+++++ |++.+|+.++|+||||+|||||+++|+|...|+.|.+...|... ...+
T Consensus 125 i~~~l~tG-~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~t 202 (422)
T TIGR02546 125 IDQPLPTG-VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRS 202 (422)
T ss_pred cccccCCC-ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccce
Confidence 34444333 4699999 99999999999999999999999999999999998887644321 2356
Q ss_pred EEcCCCCCCCCCC
Q psy106 79 FMPQQISLYPEFT 91 (321)
Q Consensus 79 ~v~Q~~~l~~~lt 91 (321)
.+++....++.++
T Consensus 203 vvv~~~s~~p~~~ 215 (422)
T TIGR02546 203 VLVVSTSDRPSLE 215 (422)
T ss_pred EEEeccccCCHHH
Confidence 6777776555443
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=85.60 Aligned_cols=62 Identities=23% Similarity=0.510 Sum_probs=40.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM 105 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~ 105 (321)
+++|++++++||||+|||||++.|+|......| ..+++++..+.. .....|.+.+++...+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--------~~~v~~i~~d~~---rigalEQL~~~a~ilGv 249 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG--------ADKVALLTTDSY---RIGGHEQLRIYGKLLGV 249 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------CCeEEEEecCCc---chhHHHHHHHHHHHcCC
Confidence 478999999999999999999999985311111 123555554442 12455666665555544
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-07 Score=83.95 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=56.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC---Cccc---------CeEEEEcCCCCC---C-CC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS---ITSK---------KQLGFMPQQISL---Y-PE 89 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~---g~~~---------~~ig~v~Q~~~l---~-~~ 89 (321)
++.+...+. +++++++||||+|||||+|.|+|...++.|++... |... ...|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344555555 58999999999999999999999999999998752 2211 236789999876 3 56
Q ss_pred CCHHHHHHHHHHH
Q psy106 90 FTIDEMICYYGLI 102 (321)
Q Consensus 90 ltv~e~l~~~~~~ 102 (321)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 7888877665443
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=83.67 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=75.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
=+.+|+++.|.||+|+|||||+..++.......+.+ -|+.-+. +..+ +...+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~V----------lYvs~EE------s~~q-i~~Ra~---------- 130 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKV----------LYVSGEE------SPEQ-IKLRAD---------- 130 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE----------EEEECCc------CHHH-HHHHHH----------
Confidence 378899999999999999999999987665443333 3443221 1111 111011
Q ss_pred HHHHHHHHHcCCcccc-CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHH-h
Q psy106 112 EKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS----GID-----PVIAEEIWNHLLYLA-E 180 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~-~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts----gLD-----~~~~~~i~~ll~~l~-~ 180 (321)
.+++...+ ....+.+-. +-. +..--.+|+++++|+-.+ .+| ....+++...|.+++ +
T Consensus 131 --------rlg~~~~~l~l~~e~~le--~I~--~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~ 198 (372)
T cd01121 131 --------RLGISTENLYLLAETNLE--DIL--ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE 198 (372)
T ss_pred --------HcCCCcccEEEEccCcHH--HHH--HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 11111000 000111111 111 111235899999999632 232 222344455555554 5
Q ss_pred CCceEEEecCChh--------HHhh-cCEEEEEeCC
Q psy106 181 SGRTILITTHYID--------EAKK-SHMIGLMRKG 207 (321)
Q Consensus 181 ~g~tIil~tH~l~--------~~~~-~drv~il~~G 207 (321)
.|.|++++.|--. .++. +|.++.++..
T Consensus 199 ~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 199 RNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 6999999999433 2455 8998888754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 321 | ||||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-20 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-20 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-19 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-19 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-18 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-17 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-17 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-17 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-16 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-16 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-16 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-16 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-16 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-16 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-16 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-16 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-16 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-16 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-15 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-15 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-15 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-15 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-15 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-15 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-15 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-14 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-14 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-14 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-14 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-14 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-14 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-14 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-14 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-13 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-13 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-13 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-12 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-11 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-10 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-10 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-10 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-08 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 8e-08 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-08 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 9e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-07 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 6e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 7e-05 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 1e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 3e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 3e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 3e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 5e-04 |
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-62
Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V++ KR K +L + +++ I+ L+G +G GKTT L I+ + G +
Sbjct: 15 AVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 68 HL--------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ +K + ++P++ Y E + + Y S +I+E E
Sbjct: 73 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ L K + + S G R++ +A L+ +P L ILDEPTSG+D + A E+ L
Sbjct: 133 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSK 237
++ G TIL+++H + E + I L+ G ++E + L E+Y +++E+VF +
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKC 252
Query: 238 QQH 240
++
Sbjct: 253 SEN 255
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-57
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 13/210 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+ + + + VL+++ MT++K + + G +G GKTTLL I+ G I
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 68 HLS----ITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL 123
+ K ++ F+P++I + + ++++ + +YG+ + K + + +
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEV 124
Query: 124 NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESG 182
K+K G LS G RRV LA TLL + E+ +LD+P ID ++ +L + E G
Sbjct: 125 LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEE 212
I+ + + + K +
Sbjct: 185 IVIISSREELSYCDV---NENLHKYSTKID 211
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 7e-41
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 25/242 (10%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I+++ + K +L K+ + K + L G +G GKTTLL+ + G +
Sbjct: 21 LIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 68 HL----------SITS-KKQLGFMPQQISLY--PEFTIDEMIC--YYGLI--YGMSLQQI 110
+L S + ++ +GF+ + + +++ + I Y +I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 111 KEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
+ +A L L+ ++ + G LS G+++RV +A L+ P++LILDEP +G+D + E
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARE 198
Query: 170 EIWNHLLYLAESGR--TILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMK 225
+ + L L++S ++ TH+I+E S I L++ G +++ + +L NM
Sbjct: 199 SLLSILDSLSDSYPTLAMIYVTHFIEEITANFSK-ILLLKDGQSIQQGAVEDILTSENMS 257
Query: 226 SL 227
Sbjct: 258 RF 259
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-39
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 20/237 (8%)
Query: 9 IRVENAYKRHSSKLP--YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQN 60
I+++N S K + L+ + + V +LG +G GKTTLL I +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 61 VLNGGNIHLSITSKKQLGFMPQQISLYP-EFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+NG + + + + Y T+++++ Y + G+ E + L+
Sbjct: 61 FINGMEVR---KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALK- 116
Query: 120 LLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L +RK LS GQ V ++ L PE++ LDEP +D I Y+
Sbjct: 117 -LGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI---SRYIK 172
Query: 180 ESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234
E G+ ++ TH +D + + L LLE ++ + LL+
Sbjct: 173 EYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLV 229
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 1e-36
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 18/232 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ VEN + ++ ++ +L + K I ++LG +GCGK+TLL + G + G I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMIC-----YYGLIYGMSLQQIKEKAEYLQALLH 122
+ + +GF+PQ S +++ +++ + + A L+
Sbjct: 63 EVY----QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQVAMQALDYLN 117
Query: 123 LNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-E 180
L H R+ SLSGGQ++ + +A + + +L++LDEPTS +D + + + L+ LA
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 181 SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVF 231
T++ TTH ++ ++ L+ K +L ++L +F
Sbjct: 178 QNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTS----ENLTALF 225
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-33
Identities = 52/242 (21%), Positives = 111/242 (45%), Gaps = 17/242 (7%)
Query: 8 AIRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG 64
I V N + R + L+ + + + + + G +G GK+TLL + G
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 65 GNIHLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLI-YGMSLQQIKEKAE 115
G++ +K+ + + I + YPE F + + + + + + + +
Sbjct: 62 GDVLYD-GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVPLVKK 119
Query: 116 YLQAL-LHLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
++ + L + FK + LSGG++RRV++A ++H+P++LILDEP G+D ++
Sbjct: 120 AMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179
Query: 174 HLLYLAESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ G+T+++ +H I+ + ++ KG + + LEKY+ + L
Sbjct: 180 IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML 239
Query: 233 LL 234
++
Sbjct: 240 VM 241
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-30
Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 18/224 (8%)
Query: 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
A+ + + K + VL+ + +++ I ++GASGCGKTTLL C+ +G+
Sbjct: 3 AALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 60 NVLNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKA 114
L+G I T+ +++LG++ Q+ L+P T+ I YGL Q +++
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNI-AYGLGNGKGRTAQERQRI 119
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
E + L ++ R LSGGQQ+R +LA L DPEL++LDEP S +D + +I
Sbjct: 120 EAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 174 HLLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPP 215
++ +G++ + +H +EA + + I +M++G +L+ + P
Sbjct: 180 DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-30
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITS----KKQLGFMPQQISLYPEFT 91
LLG +G GK+ L I G + G + L IT ++ +GF+PQ +L+P +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 92 IDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHD 150
+ I Y GL + + + + L + H RK LSGG+++RV+LA L+
Sbjct: 87 VYRNIAY-GL-RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 151 PELLILDEPTSGIDPVIAEEIWNHLLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGI 208
P LL+LDEP S +D + L ++ E IL TH + EA + + +M G
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 209 LLEESPPKVLLEKYN 223
++E+ K E ++
Sbjct: 205 IVEKGKLK---ELFS 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 64/251 (25%), Positives = 125/251 (49%), Gaps = 27/251 (10%)
Query: 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI---- 56
M L+D ++VE +S L + M +++ + ++LG +G GK+TL
Sbjct: 1 MSLEDY-ILKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 57 ---TGQNVLNGGNIHLSITSKKQLGFMPQQISL---YPE---F--TIDEMICYYGLI-YG 104
+G+ + + I S+K + + + I + P+ F ++ + + + G +
Sbjct: 59 KPSSGRILFDNKPID---YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF-GAVNMK 114
Query: 105 MSLQQIKEKAEYLQALLHLNHFKRK-CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
+ +I+++ + + H K K LS GQ++RV++A L+ +P++LILDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 164 DPVIAEEIWNHLLYL-AESGRTILITTHYIDE-AKKSHMIGLMRKGILLEESPPKVLLEK 221
DP+ EI L+ + E G TI+I TH ID + +M++G ++ + PK + +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 222 YNMKSLEDVFL 232
+ + V L
Sbjct: 235 KEV--IRKVNL 243
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 13/223 (5%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
I K + + + +++ + LLG SG GKTT+L I G
Sbjct: 10 HGSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 64 GGNIHL---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAE 115
G++ + +T K+ +G + Q +L+ T+ + + + GL + ++ +
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF-GLREKRVPKDEMDARVR 127
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L + R LSGGQQ+RV+LA L P++L+ DEP + ID I E+
Sbjct: 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187
Query: 175 LLYL-AESGRTILITTHYIDEA-KKSHMIGLMRKGILLEESPP 215
+ + E G T + TH +EA + + + ++ +G + + P
Sbjct: 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-29
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 16/218 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
+R EN K +L + ++V+K S++GASG GK+TLL + G+
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 62 LNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
L G + LS+ ++LGF+ Q L PE T E + L G ++ KE+ E
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 116 YLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
YL + L L RK LSGG+Q+RV++A L ++P LL DEPT +D + + +
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 175 LLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEE 212
L + E G +I++ TH + A+ +H M+ G ++ E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ 83
+ L ++ I +LG +G GKTT + G+ + G++ K+ L + PQ+
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE---KQILSYKPQR 338
Query: 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVS 142
I + T+ + + +L E + L+L+ LSGG+ +++
Sbjct: 339 IFPNYDGTVQQYL---ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY 395
Query: 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190
+A TL + +L +LD+P+S +D + + + E I H
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 39/221 (17%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP-QQISLYPE- 89
T + +TI +LG +G GKTT+L + G+ + N G+ + + + L ++I Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 90 ------------FTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLS 134
++ + ++ + K + ++ LL++ + + + LS
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILS 140
Query: 135 GGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH---Y 191
GG +R+ +A +LL + ++ I D+P+S +D + + L + + +++ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIV 199
Query: 192 IDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+D + +I ++ + K + + + +L
Sbjct: 200 LDYL--TDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYL 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 2 DLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61
D++ + + K + S L+ ++K + ++G +G GKTT + + G
Sbjct: 351 DVERETLVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 62 LNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
G + +T + PQ I E T+ E++ I L K E L+ L
Sbjct: 408 PTEGKVEWDLTVAYK----PQYIKAEYEGTVYELL---SKIDSSKLNSNFYKTELLKPLG 460
Query: 122 HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAE 180
++ + R LSGG+ +RV++A TLL D ++ +LDEP++ +D + + + +
Sbjct: 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520
Query: 181 SGRTILITTH 190
+ +T L+ H
Sbjct: 521 NEKTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 27/171 (15%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLS--ITSKKQLG------------------FM 80
++G +G GKTT + + GQ + N + S + G
Sbjct: 122 IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181
Query: 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQR 139
PQ + L P+ + + + K E + L L + R+ LSGG+ +
Sbjct: 182 PQYVDLLPKAVKGK------VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQ 235
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
RV++A LL DEP+S +D ++ + LA G+ +L+ H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 50/271 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
+ V + +KR+ VL + + + + S++G+SG GK+T L CI G
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 61 VLNGGNIHLSITSKKQLGFMP---------------QQISLYPEFTIDEMICYYGLIY-- 103
++NG NI+L QL Q +L+ T+ E + I
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVL 122
Query: 104 GMSLQQIKEKAEYLQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTS 161
G+S +E+A A + ++ + LSGGQQ+RVS+A L +P++L+ DEPTS
Sbjct: 123 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220
+DP + E+ + LAE G+T+++ TH + A+ S + + +G + EE P
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP----- 237
Query: 221 KYNMKSLEDVFLLLSSKQQHDRIEQRRKSFL 251
E VF Q R+ + FL
Sbjct: 238 -------EQVF----GNPQSPRL----QQFL 253
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-26
Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 38/258 (14%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNV 61
I V K S VL + + +++ + ++G SG GK+T L C+ G+ +
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 62 LNGGNIHLSITS----KKQLGFMPQQISLYPEFTIDEMICYYGLIY--GMSLQQIKEKAE 115
++G N+ T+ ++++G + Q+ +L+P T+ I + ++ + KA
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAM 141
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
L + L SLSGGQ +RV++A L +P++++ DEPTS +DP + E+ +
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 175 LLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLL 233
+ LA G T+++ TH + A++ + M G ++EE P ED+F
Sbjct: 202 MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP------------EDLF-- 247
Query: 234 LSSKQQHDRIEQRRKSFL 251
+ QH+R K+FL
Sbjct: 248 --DRPQHERT----KAFL 259
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 5e-26
Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I +E+ ++ + + LD L + V+ + +LG +G GKT L I G +V + G I
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 69 L---SITS----KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQAL 120
L +T K + F+ Q SL+P + + + + G+ + + ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF-GMRMKKIK---DPKRVLDTARD 114
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + H R +LSGG+Q+RV+LA L+ +P++L+LDEP S +DP E L L
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 180 ES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ T+L TH EA+ + I ++ G L++ P+ + EK
Sbjct: 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-26
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL+ S I ++G +G GKTTL+ + G + G K + PQ+I
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG----QDIPKLNVSMKPQKI 422
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
+ T+ ++ + I G L + + L ++ ++ LSGG+ +RV++
Sbjct: 423 APKFPGTVRQLF--FKKIRGQFLN--PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI 478
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGRTILITTH 190
+ L ++ ++DEP++ +D + ++ + +T I H
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 43/222 (19%)
Query: 6 KC---AIRVEN-----------AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTT 51
KC AI++ N Y +S KL + L T + + L+G +G GK+T
Sbjct: 64 KCPFDAIQIINLPTNLEAHVTHRYSANSFKL-HRLP----TPRPGQVLGLVGTNGIGKST 118
Query: 52 LLSCITGQNVLNGGNIHLSITSKKQLG----------------------FMPQQISLYPE 89
L + G+ N G ++ + PQ + P
Sbjct: 119 ALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP- 177
Query: 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLL 148
I + G + + +++ E + +L L + KR LSGG+ +R ++ ++ +
Sbjct: 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV 237
Query: 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+ ++ + DEP+S +D + L + ++ H
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 6e-25
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKK-----QL 77
LD + ++V K + ++G +G GK+TL++ ITG + G ++ IT+K+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 78 G----FMPQQISLYPEFTIDE--MICYY--------GLIYGMSLQQ---IKEKAEYLQAL 120
G F Q E T+ E +I L Y + + + EKA +
Sbjct: 83 GIVRTF--QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 121 LHLNHFK-RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L L+H RK G LSGGQ + V + L+ +P+++++DEP +G+ P +A +I+NH+L L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 180 ESGRTILITTH 190
G T LI H
Sbjct: 201 AKGITFLIIEH 211
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 6e-25
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN------VLNGGNIHLSITSK---K 75
L L V+ I L+G +G GK+TLL+ + G G + + ++
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE-AWSATKLAL 73
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
++ QQ + + + + E + L L+ R LS
Sbjct: 74 HRAYLSQQQTPPFATPVWHYL-----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 135 GGQQRRVSLAITLL-------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GG+ +RV LA +L +LL+LDEP + +D + L L++ G I++
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM 188
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPK-VLLEKYNMKSLEDVF 231
++H ++ + +H L++ G +L + VL +L +
Sbjct: 189 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP----PNLAQAY 230
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
L+ ++K + ++G +G GKTT + + G G I +T + PQ I
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYK----PQYI 356
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK-RKCGSLSGGQQRRVSL 143
E T+ E++ S E L L + R+ LSGG+ +RV++
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTE----LLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTH 190
A TLL D ++ +LDEP++ +D + + +L E +T L+ H
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 27/180 (15%)
Query: 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSKKQLG----------- 78
V++ + ++G +G GK+T + + GQ + L G N + G
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 79 ----FM---PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKC 130
PQ + L P+ + +I + K E + L L + +R+
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGK------VIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 131 GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
LSGG+ +RV++A LL + DEP+S +D + L+E G+++L+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-23
Identities = 58/236 (24%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 9 IRVENAYK--RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
++++N K + ++ Y L + + +++ S++G SG GK+T+L+ I G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 60 NVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDE-----MICYYGLIYGMSLQ 108
++ + L+ + ++GF+ QQ +L P T E +I + MS +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI--FKYRGAMSGE 119
Query: 109 QIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
+ +++A + L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 167 IAEEIWNHLLYL-AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
E+I L L E G+T+++ TH I+ A+ I ++ G + E + ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDDR 235
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-22
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQ 59
I++ N K + L+ + + V IY ++GASG GK+TL+ C+ G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 60 NVLNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112
+++G + + S+ +L G + Q +L T+ + + ++K
Sbjct: 85 VLVDGQEL--TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 113 KAEYLQALLHLNHFKRKC--GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
+ L +L+ L K +LSGGQ++RV++A L +P++L+ D+ TS +DP
Sbjct: 143 RVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 171 IWNHLLYL-AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214
I L + G TIL+ TH +D K+ + ++ G L+E+
Sbjct: 202 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 5e-21
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G ++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 69 LS---ITSKKQLGFMP---------QQISLYPEFTIDEMICYYGL-IYGMSLQQIKEKAE 115
+ S +L P Q +LYP T E I + L MS ++I+++ E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-PLTNMKMSKEEIRKRVE 122
Query: 116 YLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ +L ++H LSG QQ+RV+LA L+ DP LL+LDEP S +D
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 2e-20
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 36/164 (21%)
Query: 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI-SLYPEFTIDEMIC 97
Y + G +GCGK+TL+ I V + + ++ I + + ++ + +
Sbjct: 464 YGICGPNGCGKSTLMRAIANGQVDG-----FPTQEECRTVYVEHDIDGTHSDTSVLDFVF 518
Query: 98 YYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
S KE + +LSGG + +++LA +L + ++L+
Sbjct: 519 -------ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571
Query: 156 LDEPTSGIDPVIAEEIWNHL---------LYLAESGRTILITTH 190
LDEPT NHL YL G T + +H
Sbjct: 572 LDEPT------------NHLDTVNVAWLVNYLNTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 1e-10
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 21/74 (28%)
Query: 126 FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL---------L 176
+ LSGGQ+ ++ LA P L++LDEPT N+L
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT------------NYLDRDSLGALSK 942
Query: 177 YLAESGRTILITTH 190
L E ++I TH
Sbjct: 943 ALKEFEGGVIIITH 956
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-07
Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 14/251 (5%)
Query: 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63
K K ++V N ++ + + S+ +++G +G GK+TL++ +TG+ +
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726
Query: 64 GGNIHLSITSKKQLGFMPQ-QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH 122
G ++ + + ++ Q + Y + + Q +
Sbjct: 727 SGEVYTHENCR--IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEN 784
Query: 123 LNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
K + G +R + G + + E W ++ + +
Sbjct: 785 DAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDR 242
++ K M++ + + P L + ++ + L H R
Sbjct: 845 IPR---GELVESHSKMVAEVDMKEALASGQFRP---LTRKEIEEHCSMLGLDPEIVSHSR 898
Query: 243 IE-----QRRK 248
I Q+ K
Sbjct: 899 IRGLSGGQKVK 909
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNIH-LSITS-KK 75
VL L + V+K +L+G+SGCGK+T++ + G L+G I L++ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----LNH-FKRK 129
QLG + Q+ L+ +I E I Y +S ++I A+ +A +H L + +
Sbjct: 1108 QLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAK--EANIHQFIDSLPDKYNTR 1164
Query: 130 CGS----LSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ P +L+LDE TS +D +E++ L A GRT
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDKAREGRTC 1223
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I +++ G + E + LL +
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 55/216 (25%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNVLNGGNI-HLSITS-KK 75
+L L + V+ +L+G SGCGK+T + + G ++G +I +++ ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-----L-NHFKRK 129
+G + Q+ L+ TI E I Y G +++ +I++ + +A + L + F
Sbjct: 465 IIGVVSQEPVLFAT-TIAENIRY-GRE-DVTMDEIEKAVK--EANAYDFIMKLPHQFDTL 519
Query: 130 CG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185
G LSGGQ++R+++A L+ +P++L+LDE TS +D +E + L A GRT
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTT 578
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ H + + + +I G+++E+ L+ +
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 4e-19
Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQN 60
I N R+ P +LD + +++++ + ++G SG GK+TL I GQ
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 61 VLNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
+++G ++ ++Q+G + Q L +I + I GMS++++ A+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 119 A---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A + L + G LSGGQ++R+++A L+++P++LI DE TS +D
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223
I ++ + + GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 184 IMRNMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-18
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
VL L T+ + +L+G +G GK+T+ + + G+ +L+G +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK----CG 131
Q+ + Q+ L+ + E I Y GL ++++I A A ++ F + G
Sbjct: 94 QVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG 151
Query: 132 ----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA--ESGRTI 185
LSGGQ++ V+LA L+ P LLILD TS +D + LLY + + RT+
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG-NQLRVQRLLYESPEWASRTV 210
Query: 186 LITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L+ T + A+++H I +++G + E+ L+E+
Sbjct: 211 LLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 1e-17
Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS- 73
+L + Q ++I + G SG GK+T+ S + G+ ++G I ++S+ +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 74 KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL------NHFK 127
+ Q+GF+ Q ++ TI E + Y GL + + + + + A +
Sbjct: 75 RSQIGFVSQDSAIMAG-TIRENLTY-GLEGDYTDEDLWQVLD--LAFARSFVENMPDQLN 130
Query: 128 RKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGR 183
+ G +SGGQ++R+++A L +P++L+LDE T+ +D + L L + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GR 189
Query: 184 TILITTHYIDEAKKSHMIGLMRKGILLEE 212
T L+ H + + I + KG +
Sbjct: 190 TTLVIAHRLSTIVDADKIYFIEKGQITGS 218
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-16
Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 8 AIRVEN---AYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TG 58
I + +Y + ++ L + + T +L+G +G GK+T+ + G
Sbjct: 17 NIEFSDVNFSYPKQTNH--RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 59 QNVLNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116
+ G N+ + S + +G +PQ L+ E TI I Y G + + +++ + +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILY-GKL-DATDEEVIKATKS 131
Query: 117 LQA---LLHL-NHFKRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
Q + L + G LSGG+++R+++A LL DP+++I DE TS +D
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 169 EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ L + RT++I H + + I L+ KG ++E+ K LL+
Sbjct: 192 YLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-16
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 35/186 (18%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP 81
+ + + V + I +L+GA+G GKTT LS I G G I IT+K
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-----A 75
Query: 82 QQIS------------LYPEFTIDEMICYYGLIYGMSLQQIKEK-AEYLQALLHLNHF-- 126
I+ ++PE T+ E L+ G ++ KE L+ + L F
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYE-----NLMMGAYNRKDKEGIKRDLEWIFSL--FPR 128
Query: 127 -----KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
K+ G+LSGG+Q+ +++ L+ P+LL++DEP+ G+ P++ E++ + + +
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 182 GRTILI 187
G TIL+
Sbjct: 189 GTTILL 194
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SG GK+TLL I G G I+ K P Q +LYP T
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIY--FDEKDVTELPPKDRNVGLVFQNWALYPHMT 91
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ + I + L + ++I +K + +LH++ R LSGGQQ+RV++A L+
Sbjct: 92 VYKNIAF-PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 150 DPELLILDEPTSGID 164
+PE+L+LDEP S +D
Sbjct: 151 EPEVLLLDEPLSNLD 165
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-14
Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 42/237 (17%)
Query: 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65
+ +EN VL + +++ + ++ G++G GKT+LL I G+ + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 66 NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH 125
I ++ F Q + P TI E I + G+ Y ++ Y +
Sbjct: 64 KIKH----SGRISFCSQFSWIMPG-TIKENIIF-GVSY--------DEYRYRSVI----- 104
Query: 126 FKRKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+ C +LSGGQ+ R+SLA + D +L +LD P +D
Sbjct: 105 --KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ +EI+ + + +T ++ T ++ KK+ I ++ +G L
Sbjct: 163 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
+ N + + L + + + +L+G SG GK+T+ S IT G
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 61 VLNGGNIH-LSITS-KKQLGFMPQQISLYPEF--TIDEMICYYGLIYGMSLQQIKEKAEY 116
+++G ++ ++ S + Q+ + Q + L F T+ I Y S +QI+E A
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHL---FNDTVANNIAY-ARTEEYSREQIEEAAR- 455
Query: 117 LQALLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A F K LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 456 -MAYAM--DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-14
Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 39/239 (16%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI------TGQNV 61
+ V++ +++ +L+ + ++ LLG +G GK+TLLS G+
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQ 78
Query: 62 LNGGNIHLSI---TSKKQLGFMPQQISLY---------P--EFTIDEMICYYGLIYGMSL 107
++G + SI +K G +PQ++ ++ P + D+ I +
Sbjct: 79 IDGVSWD-SITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS-DQEI-WKVA----DE 131
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGS-LSGGQQRRVSLAITLLHDPELLILDEPTSGIDP- 165
++ E L+ G LS G ++ + LA ++L ++L+LDEP++ +DP
Sbjct: 132 VGLRSVIEQFPG--KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 166 ---VIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+I + + T+++ I+ + ++ + + + L
Sbjct: 190 TYQIIRRTLKQAF-----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 6e-14
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMP----------QQISLY 87
LLG SGCGKTT L I G + G I++ + ++ F+P Q +LY
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 88 PEFTIDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAI 145
P T+ + I + L + + Q+I ++ + LL L RK LSGGQ++RV+L
Sbjct: 94 PHMTVYDNIAF-PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152
Query: 146 TLLHDPELLILDEPTSGID 164
++ P++ ++DEP S +D
Sbjct: 153 AIVRKPQVFLMDEPLSNLD 171
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 9e-14
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQN 60
+ V++ + K L + ++ + +L+G SG GK+T+ + T G
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 61 VLNGGNIH-LSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L+G ++ +T+ ++ + Q + L+ + TI I Y + +QI++ A Q
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY-AAEGEYTREQIEQAAR--Q 456
Query: 119 ALLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
A H F SLSGGQ++RV++A LL D +LILDE TS +D
Sbjct: 457 A--HAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 9e-14
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SGCGKTT L I G G I + P Q +++P T
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ E I + L I +I ++ + LL + R LSGGQ++RV++A ++
Sbjct: 100 VYENIAF-PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 150 DPELLILDEPTSGID 164
+P++L++DEP S +D
Sbjct: 159 EPDVLLMDEPLSNLD 173
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-13
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 44/237 (18%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+I V NA + P L+ + ++ + + +++G GCGK++LLS + + G++
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 68 HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFK 127
+ K + ++PQQ + + ++ E I + G E+ Y +
Sbjct: 63 AI----KGSVAYVPQQAWIQND-SLRENILF-GCQL--------EEPYYRSVI------- 101
Query: 128 RKCG---------------------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV 166
+ C +LSGGQ++RVSLA + + ++ + D+P S +D
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 167 IAEEIWNHLLYLAE--SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
+ + I+ +++ +T ++ TH + + +I +M G + E + LL +
Sbjct: 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 1e-13
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP---------QQISLYPEFT 91
LLG SGCGKTT L + G G I+ P Q +LYP T
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTSGEIY--FDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 92 IDEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
+ E I + L +S +++++ + L +++ RK LSGGQQ+RV+LA L+
Sbjct: 92 VFENIAF-PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150
Query: 150 DPELLILDEPTSGID 164
P++L+ DEP S +D
Sbjct: 151 QPKVLLFDEPLSNLD 165
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-KK 75
L + TV +L+G SG GK+T+L + +G ++G +I ++ S +
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGM---SLQQIKEKAEYLQALLHL------NHF 126
+G +PQ L+ + TI + YG +++ A+ A +H +
Sbjct: 129 HIGVVPQDTVLFND-TI-----ADNIRYGRVTAGNDEVEAAAQ--AAGIHDAIMAFPEGY 180
Query: 127 KRKCG----SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG 182
+ + G LSGG+++RV++A T+L P +++LDE TS +D I L +
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-N 239
Query: 183 RTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
RT ++ H + + I +++ G ++E + LL +
Sbjct: 240 RTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 29/234 (12%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-------GQNV 61
I +++ +++ +L + ++++K + +G SG GK+TL++ I GQ +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 62 LNGGNI-HLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
++G NI S + Q+G + Q L+ + T+ E I + +++ E A+ A
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKMANA 456
Query: 120 LLHLNHFKRKC------------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167
H F LSGGQ++R+S+A L++P +LILDE TS +D
Sbjct: 457 --H--DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I L L++ RT LI H + + I ++ G ++E + L+ K
Sbjct: 513 ESIIQEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 34/245 (13%)
Query: 19 SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLG 78
S VL + +++ + ++ G++G GKT+LL I G+ + G I ++
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH----SGRIS 102
Query: 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ-----ALLH-LNHFKR---- 128
F Q + P TI E I G+ Y ++ Y L ++ F
Sbjct: 103 FCSQNSWIMPG-TIKENII--GVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 129 ----KCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184
+LSGGQ+ R+SLA + D +L +LD P +D + +EI+ + + +T
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 185 ILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIE 244
++ T ++ KK+ I ++ +G L D L D+
Sbjct: 212 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL-----QNLRPDFSSKLMGCDSFDQFS 266
Query: 245 QRRKS 249
R++
Sbjct: 267 AERRN 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-11
Identities = 54/359 (15%), Positives = 109/359 (30%), Gaps = 87/359 (24%)
Query: 16 KRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTL-LSCITGQNVL--NGGNIH-L 69
K + S+L L + + ++ + + G G GKT + L V I L
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 70 SITSKKQLG-FMPQQISLYPEFTIDEMICYYGLI---YGMSLQQIKEK-------AEYLQ 118
++ + + L + ID + + I+ + Y
Sbjct: 188 NLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 119 ALL---------HLNHFKRKC------------GSLSGGQQRRVSL--AITLLHDPELLI 155
LL N F C LS +SL L E+
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 156 L----------DEP--TSGIDP----VIAEEI------WNHLLYLAES--GRTILITTHY 191
L D P +P +IAE I W++ ++ I + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 192 ID--EAKKS-HMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRK 248
++ E +K + + + P +L + DV ++++ ++ +E++ K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 249 SFLWPIQAIQE------------HTRYLANF-LPLTYPIDSFRSIVFRGFDIFHWQVYY 294
I +I H + ++ +P T+ D + F+ + +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGH 479
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 4e-10
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAI------TLLHDPELLILDEPTS 161
++ + ++ + +R LSGG++ + LA L + LLILDEPT
Sbjct: 224 VVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP 283
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTH 190
+D ++ + + +++ +H
Sbjct: 284 YLDEERRRKLITIMERYLKKIPQVILVSH 312
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 9e-09
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQ--IS-------LYPEFT 91
+G SGCGK+TLL I G + G++ I K+ P + + LYP +
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLF--IGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 92 I-DEMICYYGL-IYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSL--AIT 146
+ + M +GL + G + I ++ + +L L H RK +LSGGQ++RV++ +
Sbjct: 92 VAENMS--FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 147 LLHDPELLILDEPTSGID 164
+P + +LDEP S +D
Sbjct: 150 --AEPSVFLLDEPLSNLD 165
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-08
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 128 RKCGSLSGGQQRRVSLAITL------LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181
R LSGG++ + LA L + LLILDEPT +D ++ + +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 182 GRTILITTHYID 193
+++ +H +
Sbjct: 113 IPQVILVSHDEE 124
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 30/163 (18%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI-------TGQNVLNGGNI-HLSITS-K 74
VL + +V+ ++ ++LG +G GK+TL++ I G+ ++ ++ + + +
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 75 KQLGFMPQQISLYPEF--TIDEMICYYGLIYGM---SLQQIKEKAEYLQALLHLNHFKRK 129
+ +PQ+ L F TI E + + G + +I E A+ Q +
Sbjct: 417 GHISAVPQETVL---FSGTIKENLKW-----GREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 130 CGS--------LSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
S SGGQ++R+S+A L+ P++LILD+ TS +D
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 30/144 (20%)
Query: 43 GASGCGKTTLLSCIT-------GQNVLNGGNIHLSITSK---KQLGFMPQQISLYPEFTI 92
G +G GKTT+++ + GQ +++G +I I +G + Q L+ T+
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTILF-STTV 445
Query: 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRK------------CGSLSGGQQRR 140
E + Y G + ++IKE A+ L H +HF + LS GQ++
Sbjct: 446 KENLKYGNP--GATDEEIKEAAK----LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 141 VSLAITLLHDPELLILDEPTSGID 164
+++ L +P++LILDE TS +D
Sbjct: 500 LAITRAFLANPKILILDEATSNVD 523
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-07
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL-------LHDPELLILDEPT 160
E + + +H + +LSGG+Q V+L++ L + E +ILDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILIT 188
+D ++ + + I+IT
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIIT 343
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL-LHDP-----ELLILDEPTS 161
I E ++ +R LSGG++ +S+++ + L + + +DE S
Sbjct: 255 FDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFS 314
Query: 162 GIDPVIAEEIWNHLLYLAESGRTILITTH 190
+D E+I + L L + I+ TH
Sbjct: 315 SLDTENKEKIASVLKELERLNKVIVFITH 343
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.97 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.97 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.96 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.95 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.95 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.94 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.94 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.93 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.92 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.92 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.92 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.92 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.92 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.92 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.91 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.91 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.91 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.91 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.9 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.9 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.89 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.89 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.88 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.88 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.88 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.87 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.87 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.87 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.86 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.86 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.85 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.84 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.83 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.82 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.82 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.81 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.8 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.8 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.79 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.79 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.79 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.74 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.73 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.73 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.72 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.71 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.7 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.7 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.69 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.68 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.67 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.66 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.65 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.63 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.62 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.62 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.61 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.6 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.58 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.57 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.57 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.56 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.54 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.54 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.53 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.53 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.51 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.5 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.49 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.45 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.42 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.42 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.41 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.41 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.39 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.38 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.36 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.36 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.33 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.24 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.22 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.21 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.2 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.12 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.06 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 99.01 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.89 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.87 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.87 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.84 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.84 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.82 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.81 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.79 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.78 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.75 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.67 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.66 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.64 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.63 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.61 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.61 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.57 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.56 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.55 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.55 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.52 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.44 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.42 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.41 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.36 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.33 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.3 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.28 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.28 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.26 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.25 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.23 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.23 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.22 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.2 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.19 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.19 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.18 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.16 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.15 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 98.03 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.02 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.99 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.97 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.96 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.96 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.95 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.93 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.86 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.86 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.86 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.85 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.76 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.73 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.73 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.73 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.71 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.7 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.7 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.69 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.66 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.65 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.63 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.6 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.57 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.56 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.56 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.55 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.54 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.48 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.45 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.41 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.36 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.36 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.35 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.32 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.29 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.27 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.26 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.25 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.22 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.21 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.2 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.18 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.17 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.13 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.12 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.1 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.08 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.03 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.02 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.02 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.01 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.01 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.99 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.95 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.95 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.93 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.9 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.89 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.89 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.88 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.88 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.86 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.81 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.78 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.78 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.76 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.74 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.72 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.72 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.69 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.69 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.68 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.68 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.66 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.66 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.63 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.63 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.63 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.62 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.61 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.61 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.6 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.57 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.57 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.52 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.51 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.48 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.48 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.47 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.46 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.42 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.42 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.37 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.34 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.3 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.3 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.29 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.28 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.28 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.28 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.26 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.25 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.24 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.24 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.23 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.23 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.22 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.22 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.19 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.19 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.18 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.17 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.17 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.17 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.15 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.15 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.14 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.14 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.14 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.14 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.13 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.13 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.13 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.13 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.12 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.11 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.1 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.08 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.08 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.07 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.06 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.04 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.03 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.02 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.02 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.01 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.99 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.98 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.98 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.96 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.96 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.94 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.92 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.92 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.92 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.9 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.89 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.89 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.87 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.87 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.86 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.85 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.84 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.81 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.8 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.8 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.79 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.79 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.79 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.78 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.77 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.76 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.75 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.74 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.74 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.74 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.74 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.73 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.73 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.73 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.73 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.72 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.7 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.7 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.69 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.69 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.68 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.67 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.67 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.65 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.65 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.64 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.64 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.63 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.62 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.62 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.61 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.61 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.6 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.59 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.59 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.58 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.58 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.58 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.58 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.58 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.57 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.56 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.55 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.55 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.55 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.55 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.53 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.52 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.52 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.5 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.5 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.49 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.49 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.49 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.48 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.48 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.48 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.47 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.46 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.45 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.45 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.44 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.44 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.43 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.43 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.42 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.39 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.34 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.33 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.32 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.31 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.31 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.31 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.29 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.28 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.27 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.26 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.24 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.24 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.23 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.22 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.2 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.2 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.18 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.18 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.17 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.15 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.12 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.12 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.07 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.04 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.01 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.95 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.95 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.93 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.91 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.88 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.88 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.84 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.84 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.82 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.81 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.8 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.76 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.72 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.68 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.5 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.49 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.44 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.34 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.23 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.11 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.11 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.09 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.05 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.08 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.93 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.9 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.75 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.74 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.7 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.68 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.67 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.66 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.64 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.56 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.47 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=455.12 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=201.0
Q ss_pred cceEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
++||+++||+|+|+++ ...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 4689999999999642 24699999999999999999999999999999999999999999999998753
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 75 ---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 75 ---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
++|||+||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999888777777777888999999999976 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|++||||||||||||.++..++++|++++ +.|+|||++|||++++.. |||+++|++|++++.|++++++....
T Consensus 182 P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 182 PKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999997 459999999999999977 99999999999999999999987643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-59 Score=432.01 Aligned_cols=225 Identities=28% Similarity=0.437 Sum_probs=201.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeE
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQL 77 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~i 77 (321)
+++|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 568999999999987 6799999999999999999999999999999999999999999999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
||+||++.+++.+||.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998766666555555567788999999975 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHH
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~ 232 (321)
||||+||||.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+......+++.|.
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~ 247 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 247 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999998779999999999999987 99999999999999999999876543345555554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=453.89 Aligned_cols=215 Identities=30% Similarity=0.486 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
++|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. +
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 47999999999998 6799999999999999999999999999999999999999999999998642 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||||||++.+|+.+||+||+.|+....+.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 69999999999999999999998766555566666788899999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||||||||+..+.++++.++++. +.|+|+|++|||++++.. ||||++|++|++++.|++++++....
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 9999999999999999999887775 679999999999999977 99999999999999999999987643
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=454.47 Aligned_cols=214 Identities=26% Similarity=0.469 Sum_probs=201.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. ++||||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 6999999999998 6799999999999999999999999999999999999999999999998753 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+||.+||.||+.|+...++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999888888777777888999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||+||+..+.++++.|+++++ .|+|+|++|||++++.. ||||++|++|++++.|++++++....
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 999999999999999999975 49999999999999977 99999999999999999999987643
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-59 Score=431.72 Aligned_cols=214 Identities=29% Similarity=0.439 Sum_probs=194.1
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 358999999999987 6799999999999999999999999999999999999999999999988542
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRR 140 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQR 140 (321)
+++||+||++.+++.+||.||+.+.. ..++.+..+.+++++++++.+++.. .++++.+||||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 35999999999999999999999854 3445555555667888999999964 589999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
|+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998779999999999999976 9999999999999999999887
Q ss_pred hh
Q psy106 220 EK 221 (321)
Q Consensus 220 ~~ 221 (321)
+.
T Consensus 242 ~~ 243 (262)
T 1b0u_A 242 GN 243 (262)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-59 Score=437.72 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=196.1
Q ss_pred CCCCCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------
Q psy106 1 MDLKDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------ 74 (321)
Q Consensus 1 ~~~~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------ 74 (321)
|.+. +++|+++|++++|+++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 M~m~-~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 1 MSLE-DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp ---C-CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred CCCc-CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccccc
Confidence 4433 4589999999999753 4599999999999999999999999999999999999999999999998653
Q ss_pred -----CeEEEEcCCCC-CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 -----KQLGFMPQQIS-LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 -----~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++. .+..+||+||+.+....++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 46999999973 3447899999999877667777777788899999999976 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+++|++|||||||+||||.++..++++|++++ ++|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999997 569999999999999976 999999999999999999998654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-59 Score=431.72 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-----------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-----------~ 75 (321)
+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999987 6699999999999999999999999999999999999999999999998642 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+|||+||++.+++.+||+||+.+.. ..++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 5999999999999999999999864 3445555555667888999999975 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||||.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999998779999999999999976 999999999999999999988654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-59 Score=422.49 Aligned_cols=207 Identities=32% Similarity=0.435 Sum_probs=189.3
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 2 AEILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred CcEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 358999999999987 6799999999999999999999999999999999999999999999998642
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
+++||+||++.+++.+||.||+.+....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 359999999999999999999998766665555555667888999999975 68999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
++|||||||+|||+.++..++++|++++++|+|||++|||+++++.||++++|++|++++.|+
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999877999999999999985599999999999998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-59 Score=424.16 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=187.8
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++||+++|+++. ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 589999999997421 3599999999999999999999999999999999999999999999998643
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc-c-cCCCCccChHHHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH-F-KRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~-~-~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++.+++.+||.||+.+..... ..+..+..+++.++++.+++.. . ++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 25999999999999999999999876543 3445556677888899999865 3 889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
+++|++|||||||+||||.++.+++++|++++++ |+|||++|||++.++.|||+++|++|++++.++++++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999754 9999999999997756999999999999999988765
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=445.15 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=200.2
Q ss_pred CCcceEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------C
Q psy106 4 KDKCAIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------K 75 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~ 75 (321)
+..++|+++|++|+| ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 10 ~~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred CCCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhC
Confidence 346789999999999 76 5699999999999999999999999999999999999999999999998653 5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||||||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999999999999999877766666666778899999999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||||||||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++.+..
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999975 49999999999999976 9999999999999999999997654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-58 Score=428.96 Aligned_cols=211 Identities=25% Similarity=0.317 Sum_probs=191.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.++|+++|+++.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +.
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 468999999999998 6799999999999999999999999999999999999999999999999753 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc------
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------ 149 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------ 149 (321)
+||+||++.+++.+||.||+.+....+. ..+.+++++++++.+++.. .++++.+|||||||||+|||||++
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 9999999998888999999988654332 2234567788899999875 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|++|||||||+||||.++.+++++|++++++ |+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999999999999999999999999999754 6899999999999976 99999999999999999998864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-58 Score=420.83 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=190.1
Q ss_pred CcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------
Q psy106 5 DKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------- 74 (321)
Q Consensus 5 ~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------- 74 (321)
+++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 3 SDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp CSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CCceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 4578999999999987 6799999999999999999999999999999999999999999999998653
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC-Ccc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLH-LNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
+++||+||++.+++.+||.||+.++.. ......+..+.++++++.++ +.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 249999999999999999999987532 12223344566777888884 754 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998789999999999999876 99999999999999999988754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-58 Score=442.97 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=198.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 999999999999999999877666666666778889999999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|++++.|++++++....
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999975 49999999999999976 99999999999999999999987543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=427.52 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=189.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
++||+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 468999999999987 6799999999999999999999999999999999999999999999998653 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH--hC-----------CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI--YG-----------MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv 141 (321)
++||+||++.+++.+||.||+.+.... .+ ....+.+++++++++.+++.. .++++.+|||||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 599999999999999999999876432 12 222344567788999999975 6899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhH
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~ 217 (321)
+|||||+++|++|||||||+||||.+++.++++|++++++|+|||++|||++++.. |||+++|++|++++.|++++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999998779999999999999976 99999999999999999888
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-58 Score=443.87 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=195.7
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999998765444444445567888999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++++...
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 999999999999999999975 49999999999999976 99999999999999999999987543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-57 Score=441.07 Aligned_cols=214 Identities=28% Similarity=0.455 Sum_probs=198.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
||+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6999999999987 6799999999999999999999999999999999999999999999988532
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 75 KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
++||||||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 160 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999999877766666666778889999999976 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||||||||||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|++++++....
T Consensus 161 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 999999999999999999999999975 49999999999999976 99999999999999999999987543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=443.11 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=190.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
+|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++. ++||||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999987 6799999999999999999999999999999999999999999999998653 569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999999998765555666666778889999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
||+||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|++++++...
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999975 49999999999999976 9999999999999999999998754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-58 Score=440.95 Aligned_cols=213 Identities=29% Similarity=0.454 Sum_probs=196.5
Q ss_pred eEEEEeEEEEeCCCCCc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKLPY--VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~--iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++|++|+|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 6999999999987 67 99999999999999999999999999999999999999999999988532
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999998766555566666778889999999976 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
+|||||||+|||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++++..
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999974 49999999999999976 9999999999999999999998654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-57 Score=436.11 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++|+|++ + +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 5899999999987 6 99999999999999999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+|+.+||+||+.|+...++.+.. ++++++++.++++. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999999999999999998766554332 66788899999975 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|+|||+..+.++++.|+++++ .|+|+|++|||++++.. |||+++|++|+++..|+++++.+...
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 999999999999999999974 59999999999999976 99999999999999999999986543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-57 Score=413.78 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=186.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++|++++|++ +|+|+||++++ |++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 5899999999975 59999999999 99999999999999999999999999999999998653 469999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++.+++.+||+||+.+....++ ....+++++++++.+++.. .++++.+|||||||||+|||||+++|++||||||
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred cCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999987643322 1222566788899999965 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.+++.++++|+++++ +|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999975 49999999999999876 999999999999999999988654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-56 Score=414.53 Aligned_cols=213 Identities=21% Similarity=0.311 Sum_probs=188.2
Q ss_pred eEEEEeEEEEeC-CCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEE
Q psy106 8 AIRVENAYKRHS-SKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~-~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig 78 (321)
||+++|++++|+ ++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 699999999997 221 3599999999999999999999999999999999999999999999998653 5699
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc--c-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 79 FMPQQI-SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN--H-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 79 ~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
|+||++ .+++.+||.||+.++...+ .+..+.+++++++++.+++. . .++++.+|||||||||+|||||+++|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999996 4566789999998864332 22222345677889999997 6 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++...
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999998669999999999999976 999999999999999999888654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=407.00 Aligned_cols=207 Identities=27% Similarity=0.373 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEeC-CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 7 CAIRVENAYKRHS-SKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 7 ~~I~v~nl~k~y~-~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
+||+++|++++|+ + +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ .+++||+||++.
T Consensus 3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----~~~i~~v~q~~~ 76 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----CSCEEEECSCCC
T ss_pred ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----eccEEEEcCCCc
Confidence 4799999999998 6 67999999999999999999999999999999999999999999983 357999999999
Q ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 86 LYPEFTIDEMICYYGLIY-G---MSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
+++.+||.||+.+....+ + ....+.+++++++++.+++.. .++++.+|||||||||+|||||+++|++|||||||
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 998999999998864322 1 122334566788899999975 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 161 SGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|+ ++.|+++++..
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999866 9999999999999976 99999999999 99999988753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=417.10 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=186.2
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 357999999999987 6799999999999999999999999999999999999999999999998542
Q ss_pred CeEEEEcCCCCC--CCCCCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 75 KQLGFMPQQISL--YPEFTIDEMICYYGLI----YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 ~~ig~v~Q~~~l--~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++|||+||++.+ ++.+||+||+.+.... ++....+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 469999999754 3457999999875321 12222334566788899999975 6899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI--LITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI--il~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+.+|++|||||||+|||+.+++.++++|++++++|+|| |++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999997669999 999999999976 99999999999999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=404.42 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=180.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc----------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~----------~ 75 (321)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7999999999987 6799999999999999999999999999999999999 789999999998653 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH-hC--CCHHHHHHHHHHHHHHcCCc-c-ccCCCCc-cChHHHHHHHHHHHHhc
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI-YG--MSLQQIKEKAEYLQALLHLN-H-FKRKCGS-LSGGQQRRVSLAITLLH 149 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~--~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~-LSgGqkQRv~iA~aL~~ 149 (321)
.++|+||++.+++.+|+.||+.+.... .+ ....+..+++.++++.++++ . .++++++ |||||||||+|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999876532 22 23334456678889999993 4 6889999 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPK 216 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~ 216 (321)
+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999997679999999999999976 4999999999999999887
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=403.34 Aligned_cols=212 Identities=19% Similarity=0.302 Sum_probs=185.8
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCccc---------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~--------- 74 (321)
.+||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.+.
T Consensus 18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 468999999999987 6799999999999999999999999999999999999 478999999998652
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHH-H---hC---CCHHHHHHHHHHHHHHcCCc-c-ccCCCC-ccChHHHHHHHH
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGL-I---YG---MSLQQIKEKAEYLQALLHLN-H-FKRKCG-SLSGGQQRRVSL 143 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~ll~~~~l~-~-~~~~~~-~LSgGqkQRv~i 143 (321)
+.+||+||++.+++.+|+.||+.+... . ++ .+..+..++++++++.+++. . .++++. +|||||||||+|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 239999999999999999999986532 1 12 23344456778889999995 3 578887 599999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh--cCEEEEEeCCEEEEecChhHHH
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK--SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~--~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. |||+++|++|++++.|+++++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999987679999999999999965 8999999999999999988763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=404.13 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSS-KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~-~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
.+|+++||+++|++ ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999975 124599999999999999999999999999999999999999999999998653 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHh
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK-----EKAEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
|||+||++.+++ .||.||+.++..... ...+.. ..+.++++.+ +++. .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999887 599999987532111 101111 1234556666 4543 57889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++|++|||||||+|||+.++..++++|+++++ +|+|||++|||++++..||++++|++|++++.|+++++...
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999864 59999999999999877999999999999999999988653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-54 Score=396.04 Aligned_cols=204 Identities=29% Similarity=0.456 Sum_probs=176.7
Q ss_pred eEEEEeEEEEe--CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 8 AIRVENAYKRH--SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y--~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
-|+++|++++| ++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. ++
T Consensus 7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred ceeEEEEEEEeCCCC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 48999999999 34 5699999999999999999999999999999999999999999999998653 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA 144 (321)
|||+||++.+++ .||+||+.++. ..... +++.++++.+++.. .++++.+|||||||||+||
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLAN--PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTC--TTCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccC--CCCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 999999999886 59999998752 11222 23344555555432 2456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+++|++|||||||+|||+.++..++++|++++ +|+|||++|||+++++.||++++|++|++++.|+++++...
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999985 69999999999999877999999999999999999988653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-54 Score=395.61 Aligned_cols=202 Identities=23% Similarity=0.333 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
+||+++|++++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. +++
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 47999999986 3899999999999999999999999999999999999999 9999998653 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC----
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE---- 152 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~---- 152 (321)
||+||++.+++.+||.||+.+.. ..... ++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred EEECCCCccCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999998752 11111 456778889999975 688999999999999999999999999
Q ss_pred ---EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 153 ---LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 153 ---lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999998679999999999999966 99999999999999999988753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-54 Score=395.51 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=177.5
Q ss_pred eEEEEeEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRH-SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y-~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
||+++|++++| ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 1 ml~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE
Confidence 58999999999 45 5699999999999999999999999999999999999999999999998642 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c-----------cCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-F-----------KRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~-----------~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+ .||.||+.++.. ..... +.+.++++.+++.. . ++++.+|||||||||+|||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE-GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT-SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc-CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence 99999999887 599999986421 11222 33455666666542 2 3456899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
||+++|++|||||||+|||+.+++.+++.|++++ +|+|||++|||++++..|||+++|++|++++.|+++++..
T Consensus 153 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999987 6999999999999887799999999999999999988864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=401.47 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=177.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
..|+++||+++|+++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 359999999999643 5699999999999999999999999999999999999999999999999764 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+ .||+||+.++... ...++..+..+ ..++.+ +++. .+++..+|||||||||+|||||++
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 99999999885 5999999875322 12222222111 111111 2222 356778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+.++..+++.|+++.+ ++|+|++||+++.+..||+|++|++|+|++.|+++++.+.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999864 7899999999999988999999999999999999998764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-54 Score=387.64 Aligned_cols=198 Identities=22% Similarity=0.330 Sum_probs=173.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEc
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMP 81 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~ 81 (321)
..+|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +++||+|
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 357999999999976 499999999999999999999999999999999999999999999999653 6799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
|++.+++.+||.||+.++...++.. .+ ++++.++++.++++..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~-~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVK-VN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCC-CC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCc-hH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 9999999999999999876554421 12 356777889999853378899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
|||+.++..++++|++++++|+|||++|||++++.. ||+++++ .|+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999997668999999999999987 8887644 3444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-53 Score=383.50 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
.+|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSWI 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCcc
Confidence 47999999999963225699999999999999999999999999999999999999999999998 49999999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc------------cccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN------------HFKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~------------~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++. ||+||+.++.. ..... ....++..++. ..++++.+|||||||||+|||||+++|+++
T Consensus 81 ~~~-tv~enl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 81 MPG-TIKENIIFGVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp CSB-CHHHHHHTTSC---CCHHH----HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cCC-CHHHHhhccCC---cChHH----HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 885 99999987421 11111 11122222221 123456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+.+++.+++.+ ++++ +|+|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999974 5554 48999999999999877999999999999999999988653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=389.01 Aligned_cols=206 Identities=25% Similarity=0.338 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 7 CAIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~-~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
++|+++|++++|++.. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.+. ++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 5799999999997631 3599999999999999999999999999999999999987 89999998653 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA 144 (321)
|||+||++.+|+ .||+||+.+... .... +.+.++++.+++.. .++++.+|||||||||+||
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKL--DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCC--CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 999999999886 599999987421 1222 22334444444321 2467889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||+++|++|||||||+|||+.++..++++|+++++ |+|||++|||+++++.||++++|++|++++.|+++++...
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999999864 8999999999999877999999999999999999988653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-53 Score=386.80 Aligned_cols=205 Identities=23% Similarity=0.380 Sum_probs=171.2
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+|+++|++++|++..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWI- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCC-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcC-
Confidence 6999999999973225699999999999999999999999999999999999999999999998 49999999875
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHH--HHHHHcCCc------cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAE--YLQALLHLN------HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~~l~------~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
+.+|+.||+.++... .....++..+ .+.+.+++. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 578999999875321 1111111111 112222221 14678999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH---HHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 160 TSGIDPVIAEEIWNHLL---YLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~---~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+|||+.++..+++.+. +++ +|+|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999995 333 58999999999999877999999999999999999988653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-53 Score=390.61 Aligned_cols=203 Identities=24% Similarity=0.326 Sum_probs=180.8
Q ss_pred eEEEEeEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc------cCeEE-
Q psy106 8 AIRVENAYKRHSSK--LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------KKQLG- 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~--~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------~~~ig- 78 (321)
||+++|++++|++. .+.+|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.+ .+++|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999751 1359999999999 9999999999999999999999999 999999999854 24799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|+||++.+ .+|+.||+.++...+... ++++.++++.+++. . .++++.+|||||||||+|||||+++|++|||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987 789999999876544222 34567788889997 6 6899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cC-EEEEEeCCEEEEecChhHHHhh
Q psy106 157 DEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SH-MIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 157 DEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~d-rv~il~~G~i~~~g~~~~l~~~ 221 (321)
||||+|||+.+++.+++.|+++++ |||++|||++++.. || ++++|++|++++.|+++++.+.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999998754 99999999999976 99 9999999999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-52 Score=404.62 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=182.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------Ce
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQ 76 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ 76 (321)
...|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+. ++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999994322679999999999999999999999999999999999998 899999999753 57
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCc-----------cChHHHHHHHHH
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGS-----------LSGGQQRRVSLA 144 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~-----------LSgGqkQRv~iA 144 (321)
+|||||++.+|+ +||+||+.+.. ... ++++.++++.+++.. .++++.+ |||||||||+||
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 999999999997 69999996421 112 245667888889875 6788887 999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
|||+++|++|||||||||||+..+.++++.|+++. .++|+|++|||++.+..|||+++|++|+|++.|++++++....
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999999998764 5899999999987766699999999999999999999987644
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=406.26 Aligned_cols=208 Identities=26% Similarity=0.365 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|+++.+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 36999999999975324699999999999999999999999999999999999999999999999653 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+. |++||+.++.. ...+. +++.++++..++++ .+++..+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 420 ALVSQNVHLFND-TIANNIAYAAE-GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred EEEcCCCccccc-cHHHHHhccCC-CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999999999875 99999987531 12222 33444555555432 23456899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|+++|||||||+||+.+++.+.+.|+++++ |+|+|++||+++.++.||++++|++|++++.|+++++.+.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999864 8999999999999988999999999999999999998754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=406.19 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 46999999999974324699999999999999999999999999999999999999999999999753 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~ 145 (321)
||+||++.+|+. |++||+.++.. ...+. +++.++++..++.+ .+++..+||||||||++|||
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred eEEccCCcCCCC-CHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987531 12222 33444555554421 24567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|+++|||||||+||+.+++.+.+.++++++ |+|+|++||+++.++.|||+++|++|++++.|+++++.+.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999999865 8999999999999878999999999999999999998754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=406.34 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=178.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 5999999999965446799999999999999999999999999999999999999999999999764 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |++||+.++.. ....++..+..+ +.++.+ +++. .+++..+||||||||++|||||+++
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred EECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 99999999875 99999986431 122222222111 111111 2322 4678899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|||||||+||+.+++.+.+.++++. +|+|+|++||+++.+..|||+++|++|++++.|+++++.++
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999874 58999999999999988999999999999999999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=403.71 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=176.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5999999999986446799999999999999999999999999999999999999999999999763 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-----------c-ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-----------H-FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~-~~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+. |++||+.++.. ....+ .+.+.++..++. . .+++..+||||||||++||||
T Consensus 419 ~v~Q~~~l~~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 419 LVQQDNILFSD-TVKENILLGRP--TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EECSSCCCCSS-BHHHHHGGGCS--SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEeCCCccCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 99999999976 99999986421 12222 222333333321 1 234567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|+++||||||||||+.+++.+.+.++++. +++|+|++||+++.++.|||+++|++|++++.|+++++.++
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998885 47999999999999988999999999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-49 Score=370.84 Aligned_cols=197 Identities=24% Similarity=0.316 Sum_probs=154.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++|+++|+++.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~ 109 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSW 109 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCC
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCc
Confidence 3579999999863 4599999999999999999999999999999999999999999999987 5999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc------------ccCCCCccChHHHHHHHHHHHHhcCCCE
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH------------FKRKCGSLSGGQQRRVSLAITLLHDPEL 153 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~------------~~~~~~~LSgGqkQRv~iA~aL~~~P~l 153 (321)
+++. |++||+. .. ..... .....++..++.. .++++.+|||||||||+|||||+++|++
T Consensus 110 l~~~-tv~enl~-~~---~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 110 IMPG-TIKENII-GV---SYDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp CCSS-BHHHHHH-TT---CCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred cCcc-cHHHHhh-Cc---ccchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 8885 9999997 32 11111 1122223333311 2345689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHL-LYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll-~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~ 220 (321)
|||||||+|||+.++..+++.+ ++++ +|+|||++|||++++..||++++|++|++++.|+++++..
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 4554 5899999999999987799999999999999999998854
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=402.76 Aligned_cols=205 Identities=25% Similarity=0.401 Sum_probs=175.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
.|+++|++++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|
T Consensus 354 ~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 59999999999753 5699999999999999999999999999999999999999999999999764 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-c-----------cCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-F-----------KRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~-----------~~~~~~LSgGqkQRv~iA~a 146 (321)
|+||++.+|+ .|++||+.++.. ..+.++ +.++++..++.. . +++..+||||||||++||||
T Consensus 433 ~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 433 IVLQDTILFS-TTVKENLKYGNP--GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp EECTTCCCCS-SBHHHHHHSSST--TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 9999999886 599999986421 122222 223333333321 1 23347899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.+++.+.+.++++. +|+|+|++||+++.++.||++++|++|++++.|+++++.++
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999985 58999999999999988999999999999999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=378.25 Aligned_cols=204 Identities=23% Similarity=0.278 Sum_probs=179.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .++||+||++.
T Consensus 355 ~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----~~i~~v~Q~~~ 427 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKPQYIK 427 (607)
T ss_dssp CEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----CCEEEECSSCC
T ss_pred ceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----eEEEEEecCcc
Confidence 468999999999986 3 6999999999999999999999999999999999999999999862 56999999998
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
+++.+||.|++....... ....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 428 ~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 428 AEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp CCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 878899999886541110 011245667888888865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHh
Q psy106 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLE 220 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~ 220 (321)
+.++..++++|++++ ++|+|||++|||++++.. |||+++|++ |++.+.|+|+++.+
T Consensus 504 ~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 504 VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999987 579999999999999977 999999986 88888999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=374.12 Aligned_cols=203 Identities=23% Similarity=0.291 Sum_probs=178.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .++||+||++.
T Consensus 285 ~~~l~~~~l~~~~~~--~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----~~i~~v~Q~~~ 357 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--F-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----LTVAYKPQYIK 357 (538)
T ss_dssp CEEEEECCEEEEETT--E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC----CCEEEECSSCC
T ss_pred CeEEEEeeEEEEECC--E-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC----ceEEEEecCCc
Confidence 468999999999976 3 6999999999999999999999999999999999999999999862 46999999998
Q ss_pred CCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 86 LYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 86 l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
.++.+||.|++.... .... ..+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 358 ~~~~~tv~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~L 432 (538)
T 1yqt_A 358 ADYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432 (538)
T ss_dssp CCCSSBHHHHHHHHHHHHHT-----CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC
T ss_pred CCCCCcHHHHHHhhhccCCC-----HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 778899998876531 1111 1245667788888865 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHh
Q psy106 164 DPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLE 220 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~ 220 (321)
|+.++.+++++|++++ +.|.|||++|||++++.. |||+++|++ |++.+.|+++++.+
T Consensus 433 D~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 433 DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999987 469999999999999976 999999996 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=367.77 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=175.9
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.++++++|+++.|++ . .|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +.++|+||+..
T Consensus 267 ~~~l~~~~l~~~~~~--~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---~~i~~~~q~~~ 340 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--F-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---QILSYKPQRIF 340 (538)
T ss_dssp CEEEEECCEEEEETT--E-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---CCEEEECSSCC
T ss_pred cceEEEcceEEEECC--E-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---eeeEeechhcc
Confidence 467999999999986 3 68889999999999999999999999999999999999999999765 46999999987
Q ss_pred CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 86 LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 86 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
....+||.||+.+..... ... ....++++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 341 ~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 341 PNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp CCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred cccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 777889999987632111 111 1234566777888865 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHH
Q psy106 165 PVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLL 219 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~ 219 (321)
+.++.+++++|++++ +.|+|||++|||++++.. ||||++|++ |.....+++.++.
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999997 469999999999999987 999999986 5666667766553
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=403.22 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=178.6
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++||+++|+++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.+. ++|
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 49999999999753 24699999999999999999999999999999999999999999999999864 679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-cc----CCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-FK----RKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-~~----~~~~~LSgGqkQRv~iA~ 145 (321)
+||||+|.+|+. |++||+.|+......+.++ +.++++..++ +. +| ....+||||||||+||||
T Consensus 1156 ~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1156 AIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHSSSSCTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred EEECCCCEeeCc-cHHHHHhccCCCCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 999999999976 9999998653222233333 3334444443 11 23 345679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
||+++|++||||||||+||+++.+.+.+.|+++. +|+|+|+++|.++.+..||||++|++|+|++.|++++++++
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998764 58999999999999999999999999999999999999865
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=393.15 Aligned_cols=210 Identities=23% Similarity=0.385 Sum_probs=177.5
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 49999999999753 24699999999999999999999999999999999999999999999999763 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHHcC--Ccc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE-----YLQALLH--LNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~~--l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+. |++||+.++.. ....++..+..+ +.++.+. ++. ...+..+||||||||++|||||++
T Consensus 467 ~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 467 GVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp EEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 999999999976 99999987532 223333322221 1222221 111 345677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+.+.+.+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998764 58999999999999988999999999999999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=395.58 Aligned_cols=212 Identities=26% Similarity=0.396 Sum_probs=175.8
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 59999999999753 23699999999999999999999999999999999999999999999999763 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHc-CCcc-----ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL--QALL-HLNH-----FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~l--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
|||||++.+|+ .|++||+.++......+.++..+..+.. .+.. .++. ......+|||||||||+|||||++
T Consensus 1110 ~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1110 GIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp EEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 99999998875 6999999865322223333332222111 1111 1111 234557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++|||||||+|||+.+++.+.+.|+++ .+|+|+|++|||++++..||||++|++|++++.|+++++.++
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999875 458999999999999977999999999999999999999765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=386.63 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=177.7
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++|++++|++. .+++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 49999999999753 35799999999999999999999999999999999999999999999999764 479
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-----------c-cccCCCCccChHHHHHHHHHH
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-----------N-HFKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----------~-~~~~~~~~LSgGqkQRv~iA~ 145 (321)
|||||+|.+|+. |++||+.|+.. ..+.++. .++++..++ + ....+..+||||||||++|||
T Consensus 495 ~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v----~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 495 AVVSQEPALFNC-TIEENISLGKE--GITREEM----VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHHTTCT--TCCHHHH----HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHH
T ss_pred cccCCcceeeCC-chhHHHhhhcc--cchHHHH----HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHH
Confidence 999999999875 99999987531 1233333 333333322 1 123556789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 146 TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 146 aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++++|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||++..+..||+|++|++|+|++.|+.+++.++
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh
Confidence 9999999999999999999999999999998875 58999999999999999999999999999999999999764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=358.80 Aligned_cols=201 Identities=19% Similarity=0.243 Sum_probs=171.1
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKS-----TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~G-----ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
++++++|++. ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+.. ....++|+||+...
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----~~~~i~~~~q~~~~ 424 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI----PKLNVSMKPQKIAP 424 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----CSCCEEEECSSCCC
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----cCCcEEEecccccc
Confidence 5677888753 35899999999999 78999999999999999999999999999731 23569999999876
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
....|+.+++... ..+... ..+.+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 425 ~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 425 KFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp CCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred cCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 6677999987532 111111 1234566788888865 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeC--CEEEEecChhHHHhh
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRK--GILLEESPPKVLLEK 221 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~--G~i~~~g~~~~l~~~ 221 (321)
.++..++++|++++ +.|+|||++|||++++.. |||+++|++ |++++.|+|+++++.
T Consensus 501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999986 569999999999999987 999999996 899999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=358.89 Aligned_cols=189 Identities=25% Similarity=0.354 Sum_probs=160.9
Q ss_pred eEEE--------EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE---------EEC
Q psy106 8 AIRV--------ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---------HLS 70 (321)
Q Consensus 8 ~I~v--------~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I---------~~~ 70 (321)
+|++ +|++++|++. ..+|+++| ++++||++||+||||||||||+|+|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 5888 8999999872 24899999 999999999999999999999999999999999995 344
Q ss_pred Ccc-----------cCeEEEEcCCCCCCC---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccCh
Q psy106 71 ITS-----------KKQLGFMPQQISLYP---EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSG 135 (321)
Q Consensus 71 g~~-----------~~~ig~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSg 135 (321)
|.. ...+++++|....++ ..|+.||+.. ... .++++++++.+++.. .++++.+|||
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VDE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TCC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hHH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 532 135889998754322 1389998853 111 134567888899875 6899999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
||||||+|||||+++|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|+++
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999999999998779999999999999977 9999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=353.45 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=157.6
Q ss_pred EEE-EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE---------EECCccc----
Q psy106 9 IRV-ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI---------HLSITSK---- 74 (321)
Q Consensus 9 I~v-~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I---------~~~g~~~---- 74 (321)
-++ +|++|+|++. ..+++++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|...
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 6899999872 24899999 999999999999999999999999999999999995 3444321
Q ss_pred -------CeEEEEcCCCCCCCC---CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 -------KQLGFMPQQISLYPE---FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -------~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
..+++++|...+++. .|+.|++... . ..++++++++.+++.. .++++.+|||||||||+|
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 358899997654332 3888877521 1 1234667888899875 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCC
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKG 207 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G 207 (321)
||||+.+|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|++|
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999998789999999999999977 9999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=366.75 Aligned_cols=204 Identities=21% Similarity=0.269 Sum_probs=166.0
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
.+||+++|++++|++..+++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++. .++||++|++.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~~ 746 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHAF 746 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccchh
Confidence 4689999999999753246999999999999999999999999999999999999999999999864 36999999752
Q ss_pred ----CCCCCCHHHHHHHHHHH-----------------------------------------------------------
Q psy106 86 ----LYPEFTIDEMICYYGLI----------------------------------------------------------- 102 (321)
Q Consensus 86 ----l~~~ltv~e~l~~~~~~----------------------------------------------------------- 102 (321)
...+.|+.+++.+....
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 12245777776542100
Q ss_pred ------------------------------------------hCCCHHHHHHHHHHHHHHcCCcc---ccCCCCccChHH
Q psy106 103 ------------------------------------------YGMSLQQIKEKAEYLQALLHLNH---FKRKCGSLSGGQ 137 (321)
Q Consensus 103 ------------------------------------------~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~LSgGq 137 (321)
.+......+++++++++.+++.. .++++++|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000001245677888999963 478899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
||||+|||||+++|++|||||||+|||+.++..+++.|+++ |.|||++|||++++.. |||+++|++|+++..|+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999888654 6799999999999976 99999999999987664
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=356.08 Aligned_cols=198 Identities=18% Similarity=0.326 Sum_probs=143.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCc-------cEEEECCcc-
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL---------------------SCITGQNVLNG-------GNIHLSITS- 73 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl---------------------~~l~Gl~~p~~-------G~I~~~g~~- 73 (321)
..+|+||||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++..
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 89999999984 455555543
Q ss_pred ----cCeEEEEcCCCCC-------------------CCCCCHHHHHHHHHHHhCC--CHHH-------HHHHHHHHHHHc
Q psy106 74 ----KKQLGFMPQQISL-------------------YPEFTIDEMICYYGLIYGM--SLQQ-------IKEKAEYLQALL 121 (321)
Q Consensus 74 ----~~~ig~v~Q~~~l-------------------~~~ltv~e~l~~~~~~~~~--~~~~-------~~~~~~~ll~~~ 121 (321)
.+.+|+++|.+.+ ++.+|+.||+.+....... .... ..++ ..+++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHc
Confidence 1456666665432 3567999999874322110 0000 0111 1347778
Q ss_pred CCcc--ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 122 HLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 122 ~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.. .++++.+|||||||||+|||||+++|+ +|||||||+||||.++..++++|++++++|.|||+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 8864 588999999999999999999999998 999999999999999999999999998889999999999998877
Q ss_pred cCEEEEE------eCCEEEEecChhHHHhh
Q psy106 198 SHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 198 ~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|||+++| ++|++++.|+++++.+.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 9999999 89999999999998754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=354.42 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=166.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---cCeEEEEcCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---KKQLGFMPQQI 84 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~~~ig~v~Q~~ 84 (321)
.|...|++++|++ +.+|+|+||+|++|+++||+||||||||||+|+|+| |+| +|.+ ..+++|++|++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~ 504 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI 504 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc
Confidence 4777799999988 679999999999999999999999999999999994 332 2221 13579999985
Q ss_pred -CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy106 85 -SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS 161 (321)
Q Consensus 85 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts 161 (321)
.+++.+|+.||+.+ ...+. ++++.++++.+++. . .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 505 ~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp CCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 67888999999975 11221 45677888999994 3 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEE-EecChhHHHh
Q psy106 162 GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILL-EESPPKVLLE 220 (321)
Q Consensus 162 gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~-~~g~~~~l~~ 220 (321)
|||+.++..++++|++ .|.|||++|||++++.. |||+++|++|+++ +.|+++++..
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999987 58999999999999977 9999999999997 6899988754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=336.88 Aligned_cols=192 Identities=24% Similarity=0.390 Sum_probs=149.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCccEEEECCcccC-----
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT----------------------GQNVLNGGNIHLSITSKK----- 75 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~----------------------Gl~~p~~G~I~~~g~~~~----- 75 (321)
..+|+|+||+|++||++||+||||||||||+++|+ |+..+ +|.+.+++.+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 44333 346666543210
Q ss_pred ---------------------------------------------eEEEEcCCCCCCC----------------------
Q psy106 76 ---------------------------------------------QLGFMPQQISLYP---------------------- 88 (321)
Q Consensus 76 ---------------------------------------------~ig~v~Q~~~l~~---------------------- 88 (321)
..|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1234444333322
Q ss_pred ----------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCCC---E
Q psy106 89 ----------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE---L 153 (321)
Q Consensus 89 ----------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~---l 153 (321)
.+|+.||+.+.... .. .++..+.++.+++.. .++++.+|||||||||+|||||+++|+ +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~-----~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI-----PK-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC-----HH-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh-----hh-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 47889998765321 11 233445666777753 578999999999999999999999874 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 154 LILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|||||||+||||.++.+++++|++++++|+|||++|||++++..|||+++| ++|++++.|+++++.+.
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 999999999999999999999999988899999999999998779999999 89999999999998653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=327.87 Aligned_cols=188 Identities=20% Similarity=0.295 Sum_probs=147.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCccc-------
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH-----------LSITSK------- 74 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~------- 74 (321)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|...
T Consensus 82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 467889763 34677777 6999999999999999999999999999999999983 223211
Q ss_pred --Ce--EEEEcCCCCC------CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 --KQ--LGFMPQQISL------YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 --~~--ig~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
+. ..+.+|.... .+..++.+++.. ... ...++++++++.+++.. .++++.+|||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----RME---KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----HCC---SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----hhh---hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 11 2233443211 111244444332 111 11255777889999975 789999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i 209 (321)
||||+++|++|||||||++||+.++..++++|++++++|+|||++|||++++.. |||+++|++|..
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998889999999999999987 999999997653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=325.97 Aligned_cols=183 Identities=20% Similarity=0.320 Sum_probs=147.6
Q ss_pred EeEEEEeCCCCCceeeeeeEEE-eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE-----------EECCccc-----
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTV-QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI-----------HLSITSK----- 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i-~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I-----------~~~g~~~----- 74 (321)
++.+.+||.+ .++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.+.
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3578899863 466666754 4999999999999999999999999999999998 4555432
Q ss_pred ------CeEEEEcCCC----CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHH
Q psy106 75 ------KQLGFMPQQI----SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 ------~~ig~v~Q~~----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~i 143 (321)
..+...+|.. .++. .++.+++... . .+++++++++.+++.. .++++.+|||||||||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~i 149 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLV 149 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 1344445443 2332 3777765311 1 1134566788889875 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~ 208 (321)
||||+++|++|||||||++||+.++..++++|+++++ |+|||++|||++++.. ||++++|++|.
T Consensus 150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999976 9999999999999977 99999998754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=317.68 Aligned_cols=193 Identities=22% Similarity=0.374 Sum_probs=153.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC------cc------EEEECCccc-------
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLL---------SCITGQNVLN------GG------NIHLSITSK------- 74 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl---------~~l~Gl~~p~------~G------~I~~~g~~~------- 74 (321)
...|+|+||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..+.
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3479999999999999999999999999997 4444443332 22 122221110
Q ss_pred -------------------------------------------CeEEEEcCCCCCCC-----------------------
Q psy106 75 -------------------------------------------KQLGFMPQQISLYP----------------------- 88 (321)
Q Consensus 75 -------------------------------------------~~ig~v~Q~~~l~~----------------------- 88 (321)
+..|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 12467777766554
Q ss_pred ---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC---CEE
Q psy106 89 ---------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP---ELL 154 (321)
Q Consensus 89 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P---~ll 154 (321)
.+|+.|++.|+... . ...+..++++.+++.. .++++.+|||||||||+|||||+++| ++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~-----~-~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI-----P-SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC-----H-HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc-----h-hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36777877764321 1 1245567888899864 57899999999999999999999876 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
||||||+|||+..++.++++|++++++|.|||++|||++++..||+|++| ++|+|++.|+++++.+.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999988899999999999999789999999 89999999999999764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=319.96 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=160.1
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC-------CCCcc-------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-GQN-------VLNGG------------- 65 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~-------~p~~G------------- 65 (321)
+.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5789999852 2699999999999999999999999999999864 221 12233
Q ss_pred EEEECCccc----------------------------CeEEEEcCCCCCCC-----------------------------
Q psy106 66 NIHLSITSK----------------------------KQLGFMPQQISLYP----------------------------- 88 (321)
Q Consensus 66 ~I~~~g~~~----------------------------~~ig~v~Q~~~l~~----------------------------- 88 (321)
.|.+++.+. +.+||+||.+.+.+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 355654321 23578877544321
Q ss_pred -------------------------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHH
Q psy106 89 -------------------------EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 89 -------------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv 141 (321)
.+|+.|++.++.. . . .. ++..++++.+++.. .++++.+|||||||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 3566777665321 1 1 11 23456788899864 5889999999999999
Q ss_pred HHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEe
Q psy106 142 SLAITLLHDP---ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEE 212 (321)
Q Consensus 142 ~iA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~ 212 (321)
+||+||+++| ++|||||||+|||+..+..++++|++++++|.|||++|||++++..|||+++| ++|++++.
T Consensus 855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 9999999875 99999999999999999999999999988899999999999998779999999 78999999
Q ss_pred cChhHHHhh
Q psy106 213 SPPKVLLEK 221 (321)
Q Consensus 213 g~~~~l~~~ 221 (321)
|+++++...
T Consensus 935 g~~~el~~~ 943 (972)
T 2r6f_A 935 GTPEEVAEV 943 (972)
T ss_dssp ESHHHHHTC
T ss_pred cCHHHHHhC
Confidence 999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=316.50 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=157.5
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CC---------------
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC-ITGQN-------VL--------------- 62 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~-l~Gl~-------~p--------------- 62 (321)
.+.|+++|+++ . +|+|+||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~---~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 500 AGWLELNGVTR---N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp SCEEEEEEEEE---T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred CceEEEEeeee---c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45799999975 1 5999999999999999999999999999997 76543 33
Q ss_pred ---Ccc-------EEEECCccc----------------------------CeEEEEcCCCC-------------------
Q psy106 63 ---NGG-------NIHLSITSK----------------------------KQLGFMPQQIS------------------- 85 (321)
Q Consensus 63 ---~~G-------~I~~~g~~~----------------------------~~ig~v~Q~~~------------------- 85 (321)
.+| .|.+++.+. +..||.++...
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 345 456665421 01123222111
Q ss_pred ---CC------------------------CCCCHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCc
Q psy106 86 ---LY------------------------PEFTIDEMICYYG----LIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGS 132 (321)
Q Consensus 86 ---l~------------------------~~ltv~e~l~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~ 132 (321)
++ ...++.|++.+.. .+.... .. .+++.++++.+++.. .++++.+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~-~~-~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE-SA-IFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS-HH-HHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc-hH-HHHHHHHHHHcCCCcccccCCccc
Confidence 11 1234444442211 111111 11 245677889999965 4889999
Q ss_pred cChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE-----
Q psy106 133 LSGGQQRRVSLAITLLHD---PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM----- 204 (321)
Q Consensus 133 LSgGqkQRv~iA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il----- 204 (321)
|||||||||+||++|+++ |++|||||||+|||+..+..++++|++++++|.|||++|||++++..|||+++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g 810 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAG 810 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCC
Confidence 999999999999999996 799999999999999999999999999988899999999999999669999999
Q ss_pred -eCCEEEEecChhHHHhh
Q psy106 205 -RKGILLEESPPKVLLEK 221 (321)
Q Consensus 205 -~~G~i~~~g~~~~l~~~ 221 (321)
++|++++.|+++++.+.
T Consensus 811 ~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 811 EDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp GGCCSEEEEECHHHHTTC
T ss_pred CCCCEEEEEcCHHHHHhC
Confidence 79999999999998654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=328.04 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=159.7
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-E-EEECCcccCeEEEEcCC
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-N-IHLSITSKKQLGFMPQQ 83 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~-I~~~g~~~~~ig~v~Q~ 83 (321)
.+|++++|++++|+ ++||++++|++++|+||||||||||+|+|+|+.+|++| + |.++|...+.++|+||+
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788888888874 68999999999999999999999999999999999999 9 99998666789999999
Q ss_pred CC---CCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHH--HhcCCCE----
Q psy106 84 IS---LYPEFTIDEMICYYGLI-YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT--LLHDPEL---- 153 (321)
Q Consensus 84 ~~---l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a--L~~~P~l---- 153 (321)
.. +++.+|+.||+ ++... .+... .+++..+++.+++..... +.+|||||||||+|||| |+.+|++
T Consensus 188 ~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sG 262 (460)
T 2npi_A 188 ISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSG 262 (460)
T ss_dssp CEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred hhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcce
Confidence 84 45567999888 54321 11111 123344566677754322 88999999999999999 9999999
Q ss_pred EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh------HHhh-cCE-----EEEEe-CCEEEEecChhHHH
Q psy106 154 LILDE-PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID------EAKK-SHM-----IGLMR-KGILLEESPPKVLL 219 (321)
Q Consensus 154 llLDE-PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~------~~~~-~dr-----v~il~-~G~i~~~g~~~~l~ 219 (321)
||||| ||++||+. ++.+.+++++ .++|+|++||+.+ ++.. ||| +++|+ +|+++ .|+++++.
T Consensus 263 LlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 263 CIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99999 99999999 5555555544 3789999999988 7766 999 99999 99999 99998774
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=272.79 Aligned_cols=187 Identities=19% Similarity=0.212 Sum_probs=138.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--------------------------------------CCcc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV--------------------------------------LNGG 65 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~--------------------------------------p~~G 65 (321)
.+++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999977664 4578
Q ss_pred EEEECCcccC----------eEEEEcCCCCCCCCCCHHHHHHHHHHHh----------------------CCCH------
Q psy106 66 NIHLSITSKK----------QLGFMPQQISLYPEFTIDEMICYYGLIY----------------------GMSL------ 107 (321)
Q Consensus 66 ~I~~~g~~~~----------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----------------------~~~~------ 107 (321)
++.++|.+.. .++++||+..++.. +..+...+.-... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999987642 38999999876543 4433332211000 0000
Q ss_pred --------------------------------HHHHHHHHHHHHHcCCcc------------------------cc----
Q psy106 108 --------------------------------QQIKEKAEYLQALLHLNH------------------------FK---- 127 (321)
Q Consensus 108 --------------------------------~~~~~~~~~ll~~~~l~~------------------------~~---- 127 (321)
....+.+...++.+++.. ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000111222233333211 00
Q ss_pred ---CCCCc-cChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 128 ---RKCGS-LSGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 128 ---~~~~~-LSgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
+++.+ ||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|++++ +|.|||++||+++.+..||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeE
Confidence 23333 6999999999999999999 9999999999999999999999999997 689999999999888779999
Q ss_pred EEE----eCCEEEEec
Q psy106 202 GLM----RKGILLEES 213 (321)
Q Consensus 202 ~il----~~G~i~~~g 213 (321)
++| ++|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-32 Score=262.52 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=79.8
Q ss_pred cCCCCccChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLL------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+|||||||||+||+||+ .+|++|||||||+||||..+..++++|++++++|.|||++|||+++++.||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4688999999999999999999 7999999999999999999999999999998889999999999999767999
Q ss_pred EEEEeCCEEEE
Q psy106 201 IGLMRKGILLE 211 (321)
Q Consensus 201 v~il~~G~i~~ 211 (321)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=237.27 Aligned_cols=151 Identities=12% Similarity=0.073 Sum_probs=107.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC-CCCCHHHHHHHHHHHhCCC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY-PEFTIDEMICYYGLIYGMS 106 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~-~~ltv~e~l~~~~~~~~~~ 106 (321)
|+||++++||+++|+||||||||||+|++.+ |...++... ..|+++|++.-. ..-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~--~~g~~~~~~~~~~~~~~~~~~~---------- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDF--CRGLMSDDENDQTVTGAAFDVL---------- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHH--HHHHHCSSTTCGGGHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHH--HHHHhcCcccchhhHHHHHHHH----------
Confidence 6899999999999999999999999998653 211122111 126777765310 000111111
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHH
Q psy106 107 LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV----------------IAEE 170 (321)
Q Consensus 107 ~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~----------------~~~~ 170 (321)
.......+. .+...........|+|||||++||||++.+|++++|||||++||+. .+..
T Consensus 63 ----~~~~~~~~~-~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 63 ----HYIVSKRLQ-LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp ----HHHHHHHHH-TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 111222222 2333222234556999999999999999999999999999999999 6688
Q ss_pred HHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 171 i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
+++.+++++++|.|+|++|||+++++.++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999988876699999999999999876654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-34 Score=257.63 Aligned_cols=145 Identities=23% Similarity=0.260 Sum_probs=103.1
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC------cccCeEEEEcCCCCCCCC
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI------TSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g------~~~~~ig~v~Q~~~l~~~ 89 (321)
|+|++ +.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.... ...+++||+||++
T Consensus 8 k~~g~--~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 8 KTLGQ--KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp CSHHH--HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------
T ss_pred CCHhH--HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-----
Confidence 45666 5689996 89999999999999999999999999 99999985310 1125699999986
Q ss_pred CCHHHHH-HHHH----HHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy106 90 FTIDEMI-CYYG----LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 90 ltv~e~l-~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD 164 (321)
.||+ .+.. ....... .+.++++++. ++ ||||||+|||||+.+|++|||||||+|
T Consensus 76 ---~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp -------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred ---HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 3444 2211 1111100 1233344433 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++..++++|+++ ++|+||| +|||+++++.
T Consensus 135 --~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 --TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp --CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred --cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 899999999988 6789999 9999988764
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-30 Score=241.61 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=75.4
Q ss_pred ccCCCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEE
Q psy106 126 FKRKCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201 (321)
Q Consensus 126 ~~~~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv 201 (321)
.++++.+||+|||||++||+||+ .+|+++||||||++||+..+..++++|++++ +|.|||++||+++..+.||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 35678899999999999999997 6899999999999999999999999999984 589999999997655669986
Q ss_pred --EEEeCCEE-EEecChh
Q psy106 202 --GLMRKGIL-LEESPPK 216 (321)
Q Consensus 202 --~il~~G~i-~~~g~~~ 216 (321)
++|.+|.- +...+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 77888753 3334443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-33 Score=272.65 Aligned_cols=174 Identities=9% Similarity=0.095 Sum_probs=140.6
Q ss_pred CceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcC
Q psy106 23 PYVLDKLCMTVQKST--------------------IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQ 82 (321)
Q Consensus 23 ~~iL~~isl~i~~Ge--------------------i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q 82 (321)
+.+|+++||++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..+.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999999999998865434489999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChH--HHHHHHHHHHHhc----------C
Q psy106 83 QISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG--QQRRVSLAITLLH----------D 150 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG--qkQRv~iA~aL~~----------~ 150 (321)
++ .++++|+.|++.+.. . +..++++++.+++...+..+. ||+| ||||++||+||++ +
T Consensus 116 ~~-~~~~ltv~D~~g~~~---~------~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS---T------NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp CS-SCTTEEEEECCCGGG---S------SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cc-ccCCeeehHhhcccc---h------HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 85 577889888765431 1 123556777777765444444 9999 9999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEecCChhH--Hhh-cCEEE-EEeCC
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLA-----ESG----RTILITTHYIDE--AKK-SHMIG-LMRKG 207 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~-----~~g----~tIil~tH~l~~--~~~-~drv~-il~~G 207 (321)
|++++|||||+||||..+.++++.++++. +.| .+|+++||++++ ++. ||++. .+.+|
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999884 332 678999999987 766 88774 34333
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-33 Score=245.54 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=119.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-----cCeEEEEcCCCCCCCCCCHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-----KKQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
.++++| .+|++||+++|+||||||||||+|+|+|+++...+.+.+.+.. .+.++|+||++.+|+.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 457888 7999999999999999999999999999986333222221111 246899999988777777777653
Q ss_pred HH----H--HHhCCCHHHHHHHHHHH------HHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC-
Q psy106 98 YY----G--LIYGMSLQQIKEKAEYL------QALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI- 163 (321)
Q Consensus 98 ~~----~--~~~~~~~~~~~~~~~~l------l~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL- 163 (321)
.. . ..++.+..+.++++.+. ++.+++.. .++++.+|| ||+.+|++++|||||+|+
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~ 155 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRG 155 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTS
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcC
Confidence 21 1 22334444444555443 33444433 466778888 899999999999999998
Q ss_pred ---CHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEe
Q psy106 164 ---DPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMR 205 (321)
Q Consensus 164 ---D~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~ 205 (321)
|+..++++++++++++ +.|.|+|++|||++++.. |||+++|.
T Consensus 156 ~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 156 TETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 7889999999999997 468999999999999977 99999884
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-29 Score=220.34 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECC---cccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSI---TSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g---~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
.++|+||||||||||+++|+|++... .|...-.- ...+++||++|++. +.+++ + ... ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~~-~~~------- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SSK-FFT------- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EET-TCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hhh-cCC-------
Confidence 58999999999999999999997522 22211000 12357899999762 22222 0 000 000
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEE
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAIT-----LLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAESGRTIL 186 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~a-----L~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~g~tIi 186 (321)
.-...++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+.+.+ .+.|+|
T Consensus 66 --------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i 134 (178)
T 1ye8_A 66 --------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVV 134 (178)
T ss_dssp --------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEE
T ss_pred --------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEE
Confidence 0023567889999999999999996 999999999999 9999999999999988854 467788
Q ss_pred Eec---CChhHHhh-cCEEEEEeCCEEEE
Q psy106 187 ITT---HYIDEAKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 187 l~t---H~l~~~~~-~drv~il~~G~i~~ 211 (321)
++| ||.++++. |+| .+|++++
T Consensus 135 ~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp EECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred EEEccCCCchHHHHHHhc----CCcEEEE
Confidence 887 58888877 887 5667665
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-32 Score=259.93 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=129.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
+|+++||+++|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~lf 165 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSHFW 165 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSGGG
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccccc
Confidence 478899999997 35999999999999999999999999999999999998 7988 45789988887
Q ss_pred CCCCHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 88 PEFTIDE-MICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 88 ~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
+. |+.+ |+.+.. .... .+...++.+ ++. ++ ..+|||||||| ||||+++|++|| ||+||+
T Consensus 166 ~~-ti~~~ni~~~~---~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 166 LA-SLADTRAALVD---DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GG-GGTTCSCEEEE---EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cc-cHHHHhhccCc---cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 64 7776 776531 1111 222333332 322 34 78999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHH
Q psy106 166 VIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 166 ~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l 218 (321)
.++..+.. .||+++.+..||++ +|++|++++.|+++++
T Consensus 227 ~~~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TTCGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 99888762 29999887779999 9999999999999887
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-30 Score=256.89 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=154.6
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS------------- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~------------- 73 (321)
++++++++++.|+.+ ..+|+++ |++.+|++++|+||||||||||+++|+|+.+|++|.|.+.|++
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 578999999999732 5699999 9999999999999999999999999999999999999998872
Q ss_pred ----cCeEEEEcCC-CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh
Q psy106 74 ----KKQLGFMPQQ-ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 74 ----~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
.+.++|++|+ ..+++.+++.+|+.+.+..+... .-.....-..+..||+|| |||+|| +
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------------~~~v~~~ld~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------------GQHVLLIMDSLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------------TCEEEEEEECHHHHHHHH-HHHHHH---T
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------------CCCHHHHHHhHHHHHHHH-HHHHHH---h
Confidence 1468999995 45677789999988765432110 000011112367899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE---S-GR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~---~-g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+|++ |+||||..+..+.+++.++.+ + |+ ||+++|||++ ...||++++|.+|+++.+++++++.
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHcc
Confidence 89988 999999999999999998865 3 75 9999999999 4449999999999999999998875
Q ss_pred h
Q psy106 220 E 220 (321)
Q Consensus 220 ~ 220 (321)
.
T Consensus 344 ~ 344 (438)
T 2dpy_A 344 H 344 (438)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-29 Score=233.66 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=131.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCC-CCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQIS-LYP 88 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~-l~~ 88 (321)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+. ..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 34678999999999999999999999999999999999999999987542 25899999998 888
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCH
Q psy106 89 EFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDP 165 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~ 165 (321)
.+|++||+.+... .+.. ..+++..++.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+
T Consensus 169 ~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 8999999986432 2111 12344555543 456788999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecC---------ChhHHhh-cCEEEEEeCCEE
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTH---------YIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH---------~l~~~~~-~drv~il~~G~i 209 (321)
..+. ++++ +.|.|+|++|| .++.+.. ++.|.++..|+.
T Consensus 236 ~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 8652 4455 45999999999 4445544 788999999864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=232.43 Aligned_cols=111 Identities=24% Similarity=0.435 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 110 IKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
+.++++ .+..+++.. +++++.+|||||||||+||+||+.+| ++|||||||+||||...+.++++|+++++.|.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344454 466788874 58999999999999999999999999 5999999999999999999999999999889999
Q ss_pred EEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHhh
Q psy106 186 LITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 186 il~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
|++|||++++..||+|++| ++|++++.|+++++...
T Consensus 435 IvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 435 FVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999988779999999 79999999999988653
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-27 Score=252.42 Aligned_cols=173 Identities=15% Similarity=0.175 Sum_probs=127.1
Q ss_pred CcceEEEEe-----EEEEe-CCCCCceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 5 DKCAIRVEN-----AYKRH-SSKLPYVLDKLCMTVQK-------STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 5 ~~~~I~v~n-----l~k~y-~~~~~~iL~~isl~i~~-------Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
+.++|+++| |++.| ++ ..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------- 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------- 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------
Confidence 346899999 99999 55 5699999999987 999999999999999999999 99875
Q ss_pred cccCeEE-EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 72 TSKKQLG-FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 72 ~~~~~ig-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
..++| ||||++. .+++.|++.. .+++.. ..+..+++|++|++ +++|++++.
T Consensus 815 --~aqiG~~Vpq~~~---~l~v~d~I~~---------------------rig~~d~~~~~~stf~~em~~-~a~al~la~ 867 (1022)
T 2o8b_B 815 --MAQMGCYVPAEVC---RLTPIDRVFT---------------------RLGASDRIMSGESTFFVELSE-TASILMHAT 867 (1022)
T ss_dssp --HHTTTCCEESSEE---EECCCSBEEE---------------------ECC---------CHHHHHHHH-HHHHHHHCC
T ss_pred --HhheeEEeccCcC---CCCHHHHHHH---------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCC
Confidence 23466 9999863 3455554410 111111 22345788888876 999999999
Q ss_pred CCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEE--EecChhH
Q psy106 150 DPELLILDEPTSGIDPVIA-EEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILL--EESPPKV 217 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~-~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~--~~g~~~~ 217 (321)
+|+++||||||+|+|+... ..+++++..++++ |.++|++||+++++.. ||++.++ +|++. +.|++++
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999999975 5578999999866 9999999999999977 9998876 58887 4455443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-27 Score=227.89 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=131.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCC-CCCCC
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQIS-LYPEF 90 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~-l~~~l 90 (321)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999987542 25899999998 88889
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHH
Q psy106 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVI 167 (321)
Q Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~ 167 (321)
|++|++.+... .+.. ..+++..++.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+..
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999986532 1111 11334455543 456788999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHHH-hCCceEEEecC---------ChhHHhh-cCEEEEEeCCEE
Q psy106 168 AEEIWNHLLYLA-ESGRTILITTH---------YIDEAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 168 ~~~i~~ll~~l~-~~g~tIil~tH---------~l~~~~~-~drv~il~~G~i 209 (321)
+. +++. +.|.|+|++|| .++.+.. +..|.++..|+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 53 3444 45999999999 3444544 788999988853
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=214.27 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=78.1
Q ss_pred cCCCC-ccChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 127 KRKCG-SLSGGQQRRVSLAITLL---------HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 127 ~~~~~-~LSgGqkQRv~iA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.+.++. .|+|++||. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34666 79999999999999999 8999999999999999999999999998764 799999994 44
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q psy106 197 KSHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 197 ~~drv~il~~G~i~~~g~~~~l 218 (321)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=207.12 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=71.4
Q ss_pred cCCCCccChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQR------RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQ------Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+||||||| |+++|+||+.+|++|||||||+||||..+..++++|+++.++|.|||++|||.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5678999999999 6788888999999999999999999999999999999987778999999999765555999
Q ss_pred EEEEe
Q psy106 201 IGLMR 205 (321)
Q Consensus 201 v~il~ 205 (321)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-30 Score=231.46 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=97.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc----------cCeEEEEcCCCCCCCCCCH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS----------KKQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~----------~~~ig~v~Q~~~l~~~ltv 92 (321)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ...++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99988 432 1468999998766554321
Q ss_pred -HHHHH---HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH-----HHHHhcCCCEEEEeCCCCCC
Q psy106 93 -DEMIC---YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL-----AITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 93 -~e~l~---~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i-----A~aL~~~P~lllLDEPtsgL 163 (321)
.+++. +....++.+. ..++++++.......+ .+|||||+||++| |++|+.+|++++|||||+++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 11111 1111222222 2234444443322122 5799999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy106 164 DPVIAEEIWNHLLYLA 179 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~ 179 (321)
|..+...+.+.+.+..
T Consensus 159 d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLN 174 (218)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999889988887764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-27 Score=223.98 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=141.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
++++++++++.|+.+ ..+++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.+.+.|++.
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 578999999999832 5799999 99999999999999999999999999999999999998877541
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh
Q psy106 75 ----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL 148 (321)
Q Consensus 75 ----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~ 148 (321)
+.+.+++|.. .+..+.+...... ....+.....+.+. .-..+.+||+|| ||+++| +
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 2356666542 2222222111000 00011111111111 114678999999 899999 6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAE--SGR-----TILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~--~g~-----tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
.+|++ |+||||..+.++++++.++.+ .|. ||+++|||++ ...||++++|.+|+++.+++++++.
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 88888 999999999999999999864 587 9999999999 2339999999999999999988764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-27 Score=222.99 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
.++|+||||||||||+|+|+|+.+|++|+|.++|.+. +.+||+||++.+++.+||.||+.|+....+.. ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HH
Confidence 3799999999999999999999999999999987642 57999999999999999999988764333211 11
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCC
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY 191 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~ 191 (321)
+.+...++. ...++.+.+||||||||+++|||++. ++++|||++||||.. .+.++.+++. .+||++.|.
T Consensus 81 ~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 81 EPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 122222220 11355678999999999999999886 999999999999987 4556666655 888888887
Q ss_pred hhHH
Q psy106 192 IDEA 195 (321)
Q Consensus 192 l~~~ 195 (321)
.+.+
T Consensus 150 ~D~l 153 (270)
T 3sop_A 150 ADTM 153 (270)
T ss_dssp GGGS
T ss_pred cccC
Confidence 6544
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-29 Score=235.65 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=132.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMT-----------------------VQKSTIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~-----------------------i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 3588899999994 366777664 8999999999999999999999999999998
Q ss_pred ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH
Q psy106 64 GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 64 ~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i 143 (321)
+|. ++++|++|++.+++. |+.||+.+.. .++.+.....+.+.++++.++-...+.++.+|||||+||+++
T Consensus 118 ~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 118 DHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEE
T ss_pred CCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhh
Confidence 664 469999999988887 9999986432 123332222344555666655222356788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHH-hh-cCEEEEEeCCE
Q psy106 144 AITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEA-KK-SHMIGLMRKGI 208 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~-~~-~drv~il~~G~ 208 (321)
|+|++.+|++||||||++.+|+.. ..+.+ -+. .|+++|+.+.. ++ ++|...++++.
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998621 11222 233 46667777665 33 66665555554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-26 Score=227.77 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=121.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
+..+++|++++|+||||||||||+++++|+.+|+ |+ +.+.|.+|++. .++.++. ...+....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------~vi~~~~ee~~----~~l~~~~----~~~g~~~~- 336 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------RAILFAYEESR----AQLLRNA----YSWGMDFE- 336 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------CEEEEESSSCH----HHHHHHH----HTTSCCHH-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------CEEEEEEeCCH----HHHHHHH----HHcCCCHH-
Confidence 4589999999999999999999999999998885 43 12456777652 1222222 12233211
Q ss_pred HHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCc
Q psy106 110 IKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPV-----IAEEIWNHLLYLAESGR 183 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~-----~~~~i~~ll~~l~~~g~ 183 (321)
++. ..++. ..+.++.+||+||+||+++|+++..+|+++|+| ||++||+. .++.++++++.+++.|.
T Consensus 337 ------~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 337 ------EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp ------HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 122 23433 357788999999999999999999999999999 99999999 99999999999988899
Q ss_pred eEEEecCCh----------hHHhh-cCEEEEEeCCE
Q psy106 184 TILITTHYI----------DEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 184 tIil~tH~l----------~~~~~-~drv~il~~G~ 208 (321)
|||++||+. ++++. ||++++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999 67766 99999999886
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-26 Score=221.63 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=105.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 78999999999999999999999999999999999999999999987531 1122211
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
. |||+||++||+||.++|+++++||||+ .++++.++.
T Consensus 224 ----------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~ 260 (330)
T 2pt7_A 224 ----------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNV 260 (330)
T ss_dssp ----------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHH
T ss_pred ----------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHH
Confidence 0 899999999999999999999999998 245677777
Q ss_pred HHhCCceEEEecCChhHHhhcCEEEEEeCCE
Q psy106 178 LAESGRTILITTHYIDEAKKSHMIGLMRKGI 208 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~~~~~drv~il~~G~ 208 (321)
+...+.|++++||+++..+.|||+++|.+|.
T Consensus 261 ~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 261 LCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 6644568999999999545599999888774
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-28 Score=245.21 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=125.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCccEEEECCccc--------C
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSC--ITGQNVLNGGNIHLSITSK--------K 75 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~--l~Gl~~p~~G~I~~~g~~~--------~ 75 (321)
++++.+++.+..++ .++|+++|| +|++|++++|+||||||||||+++ ++|+.+|++|.|+++|.+. +
T Consensus 11 ~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~ 88 (525)
T 1tf7_A 11 NNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNAR 88 (525)
T ss_dssp ---CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHG
T ss_pred CCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHH
Confidence 45677777766656 679999999 999999999999999999999999 6899999999999988652 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
++||+||++...++ +.+. .... . + ...++++.+++.. .++.+.+||+| +|+++
T Consensus 89 ~~g~~~q~~~~~~~------l~~~-~~~~-~-~----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~l 142 (525)
T 1tf7_A 89 SFGWDLAKLVDEGK------LFIL-DASP-D-P----EGQEVVGGFDLSALIERINYAIQKY-------------RARRV 142 (525)
T ss_dssp GGTCCHHHHHHTTS------EEEE-ECCC-C-S----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEE
T ss_pred HcCCChHHhhccCc------EEEE-ecCc-c-c----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEE
Confidence 68888887542211 1000 0000 0 0 0000111111111 23444555555 58899
Q ss_pred EEeCCCC-----CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH---------hh-cCEEEEEeCCE
Q psy106 155 ILDEPTS-----GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA---------KK-SHMIGLMRKGI 208 (321)
Q Consensus 155 lLDEPts-----gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~---------~~-~drv~il~~G~ 208 (321)
++||||+ +||+..++.+++++++++++|+|||++||+++++ +. ||++++|++|+
T Consensus 143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 9999998 4699999999999999987899999999999984 56 99999999844
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=209.15 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEEE-CCccc-----CeEEEEcCCCCCCCCCCHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIHL-SITSK-----KQLGFMPQQISLYPEFTIDEM 95 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~~-~g~~~-----~~ig~v~Q~~~l~~~ltv~e~ 95 (321)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+ .+... +++.++++...+ +..++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccc
Confidence 3479999999999999999999999999999999999999877 6654 33211 223333333221 22233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HH
Q psy106 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ-QRRVSLAITLLHDPELLILDEPTS---G---IDP-VI 167 (321)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq-kQRv~iA~aL~~~P~lllLDEPts---g---LD~-~~ 167 (321)
+.... + +.++..+.++.+++...+. ....+.++|.++ +||+. |+++.++|+++|+||||+ + +|+ ..
T Consensus 98 l~~~~-~---~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 98 LKREI-I---ENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH-H---HHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccCC-C---CHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 32211 1 1122233334333222222 233456789998 67777 999999999999999999 5 566 66
Q ss_pred HHHHHHHHHHHHh-CCceEEEecCCh--h--------------------HHhh-cCEEEEEeCCEE
Q psy106 168 AEEIWNHLLYLAE-SGRTILITTHYI--D--------------------EAKK-SHMIGLMRKGIL 209 (321)
Q Consensus 168 ~~~i~~ll~~l~~-~g~tIil~tH~l--~--------------------~~~~-~drv~il~~G~i 209 (321)
..++++.|+++++ .|+|||++||+. + .++. ||+|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7889999999974 599999999995 4 5666 999999999875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-25 Score=233.41 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=127.1
Q ss_pred HHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHc
Q psy106 52 LLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----------LQQIKEKAEYLQALL 121 (321)
Q Consensus 52 Ll~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~ll~~~ 121 (321)
...|..+.++|..++|.++|++... +..+++.+++.+.... ... .++..+ ..+.+..+
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~----------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~L~~v 451 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE----------FTELSISEELEFLKNL-NLTEREREIVGELLKEIEK-RLEFLVDV 451 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH----------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHH-HHHHHHTT
T ss_pred chhcccccCChHhcCcEECCccHHH----------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHH-HHHHHHHc
Confidence 3455567788999999999875411 3456778877764321 111 011222 33456677
Q ss_pred CCcc--ccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh
Q psy106 122 HLNH--FKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 122 ~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
++.. .++++.+|||||||||+|||||+++|+ +|||||||+||||..+..++++|++++++|.|||++|||++++..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 8864 589999999999999999999999887 999999999999999999999999998889999999999999877
Q ss_pred cCEEEEE------eCCEEEEecChhHHHhh
Q psy106 198 SHMIGLM------RKGILLEESPPKVLLEK 221 (321)
Q Consensus 198 ~drv~il------~~G~i~~~g~~~~l~~~ 221 (321)
||++++| ++|++++.|+++++.+.
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9999999 89999999999998764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-26 Score=207.73 Aligned_cols=173 Identities=10% Similarity=0.101 Sum_probs=112.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...++++|++|+. +++.+|+.+++.+....
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhhhccC
Confidence 67999999999999999999999999999999999965 444333 2346799999995 77889999998765433
Q ss_pred hCCCHHH--HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy106 103 YGMSLQQ--IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 103 ~~~~~~~--~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~ 180 (321)
+....++ ..+.+.+.++.+. ...++++.+||+||+||+++ ++++.+|+++|+|||....|+. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-- 153 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-- 153 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--
T ss_pred CCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--
Confidence 2221111 1122233333221 22456788999999999988 6889999999999999888864 1222
Q ss_pred CCceEEEecCChhHH-hh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 181 SGRTILITTHYIDEA-KK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 181 ~g~tIil~tH~l~~~-~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
.+.||+++||+...+ +. ++++ ++|+ +++++.++
T Consensus 154 ~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 154 FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 378999999985544 44 5444 6664 56666543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-24 Score=212.50 Aligned_cols=80 Identities=28% Similarity=0.383 Sum_probs=74.5
Q ss_pred CCCCcc-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 128 RKCGSL-SGGQQRRVSLAITLLHDP--ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 128 ~~~~~L-SgGqkQRv~iA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|+++++ |.|||++||+++.+..|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999987 89999999999988789999999
Q ss_pred eCCE
Q psy106 205 RKGI 208 (321)
Q Consensus 205 ~~G~ 208 (321)
+++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6653
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=224.10 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=120.0
Q ss_pred eEEEEeEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCccEEEECCcccCe
Q psy106 8 AIRVENAYKRHSS---KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCI--------TGQNVLNGGNIHLSITSKKQ 76 (321)
Q Consensus 8 ~I~v~nl~k~y~~---~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l--------~Gl~~p~~G~I~~~g~~~~~ 76 (321)
.|++++...-+=. +...+++|+||++++|++++|+|||||||||+||++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4666665443311 114688999999999999999999999999999999 56555543221
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEE
Q psy106 77 LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELL 154 (321)
Q Consensus 77 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~ll 154 (321)
++.+. .++. .+++. +.....+|+||+++..+|+++ +.+|+++
T Consensus 702 ~~~~d---~i~~-------------------------------~ig~~--d~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 702 VSIVD---CILA-------------------------------RVGAG--DSQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp EECCS---EEEE-------------------------------ECC-----------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred chHHH---HHHH-------------------------------hcCch--hhHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 11100 0010 11111 122345777777777777777 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHH
Q psy106 155 ILDEPTSGIDPVIAEEI-WNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i-~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~ 219 (321)
||||||+|+||.....+ +.++..+++ .|.|+|++||+.+.++.||++..+++|++.+.++++++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999999999988888 777788875 599999999998877779999999999999888777653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=217.47 Aligned_cols=130 Identities=19% Similarity=0.401 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHhcCC--CEE
Q psy106 89 EFTIDEMICYYGLIYGMSL----------QQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDP--ELL 154 (321)
Q Consensus 89 ~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~~~P--~ll 154 (321)
.+||.|++.|+..+ ..+. +++.++++ .+..++++. +++++.+|||||||||+||++|..+| ++|
T Consensus 451 ~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl~-~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHHH-HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 47899999985433 3443 23444553 467888874 58999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE------eCCEEEEecChhHHHh
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM------RKGILLEESPPKVLLE 220 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il------~~G~i~~~g~~~~l~~ 220 (321)
||||||+||||...+.+++.|+++++.|.|||++|||++++..||||++| ++|++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999998899999999999998779999999 7999999999998865
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-24 Score=222.16 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=118.0
Q ss_pred eEEEEeEEEEe---CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCcccCeEEEEcCC
Q psy106 8 AIRVENAYKRH---SSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSITSKKQLGFMPQQ 83 (321)
Q Consensus 8 ~I~v~nl~k~y---~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~ig~v~Q~ 83 (321)
.|++++...-. ++ ..+++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+. . ....++|+++|
T Consensus 550 ~i~i~~~rHP~le~~~--~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p-a~~~~i~~v~~- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRT--EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P-AEEAHLPLFDG- 621 (765)
T ss_dssp SEEEEEECCTTGGGTS--CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S-SSEEEECCCSE-
T ss_pred cEEEEEeECceEccCC--ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e-hhccceeeHHH-
Confidence 36666663322 22 5689999999 99999999999999999999999874 6788753 1 12346788776
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCC--
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEP-- 159 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEP-- 159 (321)
+++.+++.||+.. .+|+||+|++.+|+++ +.+|+++|||||
T Consensus 622 --i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 --IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp --EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred --hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 5566677665432 3589999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecC
Q psy106 160 -TSGIDPVIA-EEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 160 -tsgLD~~~~-~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
|++||+.+. ..+.+.+.+ .|.|+|++||+.+++..| .-.+.++++.....
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEc
Confidence 999999876 467777765 589999999999887655 22345566555443
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-24 Score=189.56 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=91.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CccEEEECCccc---CeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVL-------NGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-------~~G~I~~~g~~~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
-|++|++++|+||||||||||+++|+|+..| ..|.+++++... +++++++|...+++. ++.||+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~--- 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYV--- 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEE---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEE---
Confidence 6999999999999999999999999996555 233555544321 123333333322221 22222111
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH-HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ-QRRVSLAITLLH-------DPELLILDEPTSGIDPV------- 166 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq-kQRv~iA~aL~~-------~P~lllLDEPtsgLD~~------- 166 (321)
....+.++ ++.+..+++++. +|+++++||||+++|+.
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 11223333 333555555554 99999999999999984
Q ss_pred H-----HHHHHHHHHHHH-hCCceEEEecCChhH----Hhh-cCEEEEEeCC
Q psy106 167 I-----AEEIWNHLLYLA-ESGRTILITTHYIDE----AKK-SHMIGLMRKG 207 (321)
Q Consensus 167 ~-----~~~i~~ll~~l~-~~g~tIil~tH~l~~----~~~-~drv~il~~G 207 (321)
. ..++++.+.+++ +.|+|||++||+.++ ++. ||++++|++|
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 236777777776 459999999996655 766 9999999875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-25 Score=206.98 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=89.3
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCccEEEECCcc------cCeEEEEcCCC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLNGGNIHLSITS------KKQLGFMPQQI 84 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~~G~I~~~g~~------~~~ig~v~Q~~ 84 (321)
+||++.|++ +.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.+ .+.+++++|..
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 589999998 67999999999 99999999999999999998 889999 7665533 24579999988
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CC
Q psy106 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GI 163 (321)
Q Consensus 85 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gL 163 (321)
.++..+|+.|+..+...... .+..+.....+.+ ..++++.++|||||||+.+|||++ ++++||||+ ||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp -CCEEEEEEEEC-------------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred CcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 88888888887766432210 0111111222211 135678899999999999999986 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHh-CCceEEEecCChh
Q psy106 164 DPVIAEEIWNHLLYLAE-SGRTILITTHYID 193 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~-~g~tIil~tH~l~ 193 (321)
|+... ++++++.+ .+.++++++||+.
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99873 56666654 3889999999984
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=169.11 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=73.7
Q ss_pred cCCCCccChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 127 KRKCGSLSGGQQRRVSLA------ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA------~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.+.+++++|.|||++|||++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 578899999999999876 89999999999999999999999999999999987678999999999954445999
Q ss_pred EEEE--eCCE
Q psy106 201 IGLM--RKGI 208 (321)
Q Consensus 201 v~il--~~G~ 208 (321)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=194.25 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCccChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITLL----HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||+...+..||+++.+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEE
Confidence 34569999999999999999 58999999999999999999999999999876689999999998776779999988
Q ss_pred e
Q psy106 205 R 205 (321)
Q Consensus 205 ~ 205 (321)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-23 Score=216.68 Aligned_cols=142 Identities=14% Similarity=0.217 Sum_probs=99.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+++|+||++++|++++|+||||||||||||+++++... ..|.. +... ...++++ ..++..+.+.+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~-~~~i~~~---d~i~~~ig~~d------- 727 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAE-EATIGIV---DGIFTRMGAAD------- 727 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSS-EEEEECC---SEEEEEC-----------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccch-hhhhhHH---HHHHHhCChHH-------
Confidence 5689999999999999999999999999999999754211 11100 0000 0111111 01111111111
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW-NHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~ll~~l~~ 180 (321)
...+..+++|+||+|++.++++ +.+|+++||||||+||||.....+. .++..+.+
T Consensus 728 -----------------------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 728 -----------------------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1234567899999999999999 8999999999999999999998887 77777764
Q ss_pred -CCceEEEecCChhHHhhcCE
Q psy106 181 -SGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 181 -~g~tIil~tH~l~~~~~~dr 200 (321)
.|.|+|++||+++.++.||+
T Consensus 784 ~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 784 DVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCCEEEEECSCGGGGGHHHH
T ss_pred hcCCeEEEEeCcHHHHHHHhh
Confidence 69999999999988765554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-23 Score=191.54 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=103.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCcccCeEEEEcCCCCCC
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSKKQLGFMPQQISLY 87 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~ 87 (321)
++++++++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+..-+
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~---i~~~~~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP---IEYVFKHKKSI 74 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS---CCSCCCCSSSE
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc---ceeecCCccee
Confidence 455666532 3899999 9999999999999999999999999999998 9999988765 34555543100
Q ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 88 PEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
. .. ..++++ ..+| |++||+||.++|+++++|||| |+.+
T Consensus 75 --------------v---~q-----------~~~gl~-----~~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 --------------V---NQ-----------REVGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp --------------E---EE-----------EEBTTT-----BSCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred --------------e---eH-----------HHhCCC-----HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 012221 1223 899999999999999999999 9988
Q ss_pred HHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe
Q psy106 168 AEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR 205 (321)
Q Consensus 168 ~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~ 205 (321)
...++ +. ++.|.+|+++||+.+....|||++.|.
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHH---HH-HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 65443 33 356999999999988544578765553
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-25 Score=224.06 Aligned_cols=183 Identities=14% Similarity=0.239 Sum_probs=118.4
Q ss_pred ceEEEEeEEEEeCCCCCceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCccc-
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKL----------CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSK- 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~i----------sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~- 74 (321)
++++++|+++.|+.+.+++++.+ +++++. +||+||||||||||+++|+|+..| ++|.|+++|.+.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46899999999975333455544 477776 999999999999999999999988 799999887541
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHH
Q psy106 75 -----------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSL 143 (321)
Q Consensus 75 -----------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~i 143 (321)
+++||+||++.+++.+||.+|+.+.....+.. +. .+| ++++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~---------------~~--------~~s---~~~i~l 139 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE---------------GM--------GIS---HELITL 139 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS---------------SS--------CCC---SCCEEE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC---------------cc--------ccc---hHHHHH
Confidence 47999999999999999999987653321100 00 001 122233
Q ss_pred HHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHH-h-CCceEEEecCChhHH--------hh-----cCEEE
Q psy106 144 AITLLHDPELLILDEP------TSGIDPVIAEEIWNHLLYLA-E-SGRTILITTHYIDEA--------KK-----SHMIG 202 (321)
Q Consensus 144 A~aL~~~P~lllLDEP------tsgLD~~~~~~i~~ll~~l~-~-~g~tIil~tH~l~~~--------~~-----~drv~ 202 (321)
+.+....|+++|+||| |+|||+..+.++.++++++. + .+.+++++||+++.+ .. +..|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 3344568999999999 99999999999999999964 3 478899999998632 11 35689
Q ss_pred EEeCCEEEEecChhHH
Q psy106 203 LMRKGILLEESPPKVL 218 (321)
Q Consensus 203 il~~G~i~~~g~~~~l 218 (321)
++.++.++..|+.+++
T Consensus 220 VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKV 235 (608)
T ss_dssp EEECGGGSSSSSTTCC
T ss_pred EecchhhcCcccHHHH
Confidence 9999888877766543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-25 Score=192.90 Aligned_cols=145 Identities=13% Similarity=0.051 Sum_probs=113.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCC--CCCCHHHHHHHHHHHhCCCHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLY--PEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.++..+.. +.+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 66 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFD 66 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhh
Confidence 578999999999999999999999998875 589999998766 5678888765431 1111111
Q ss_pred HHHHHHHHHHcCCcc-ccCCCCccChHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH
Q psy106 111 KEKAEYLQALLHLNH-FKRKCGSLSGGQ----QRRVSLAITLLHDPELLILDEPTSG-------IDPVIAEEIWNHLLYL 178 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~-~~~~~~~LSgGq----kQRv~iA~aL~~~P~lllLDEPtsg-------LD~~~~~~i~~ll~~l 178 (321)
.+.+.+.++.+++.. .++++.++|+|| +||+++|++++.+|+++++||||++ ||+....++.+.+.+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 233444555555543 556788999997 4788999999999999999999999 9999999999998875
Q ss_pred -HhCCceEEEecCChh
Q psy106 179 -AESGRTILITTHYID 193 (321)
Q Consensus 179 -~~~g~tIil~tH~l~ 193 (321)
+++|.|++.++|+..
T Consensus 147 ~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 147 VLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 467999999999753
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-22 Score=212.92 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=111.8
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|.. +. ....++++++| ++..+++.|++..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vp-a~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VP-AQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BS-SSEEEECCCCE---EEEEEC----------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cc-hhcccceeHHH---HHhhCCHHHHHHh---
Confidence 5689999999 99999999999999999999999997432 23321 11 11134555554 4455555555421
Q ss_pred HhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh
Q psy106 102 IYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI-WNHLLYLAE 180 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i-~~ll~~l~~ 180 (321)
..+++|++|++ ++.+...+.+|+++|||||++|+|+.....+ ++++..+++
T Consensus 666 ---------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 666 ---------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ---------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 12346777765 4455557999999999999999999877775 788888887
Q ss_pred -CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhH
Q psy106 181 -SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 181 -~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~ 217 (321)
.|.|+|++||+.+.+..||++..+++|++......++
T Consensus 718 ~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~ 755 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDT 755 (800)
T ss_dssp TTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTE
T ss_pred ccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcCCc
Confidence 5999999999998877788877788888876654333
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-22 Score=189.98 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEMICYY 99 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~l~~~ 99 (321)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..++|++|++.++|.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999987542 2589999999988888999998754
Q ss_pred HHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy106 100 GLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~ 179 (321)
.. .+.. ..+++..+. .+.....++..++||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~-~~~d--------~~llDt~G~--~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KA-RGYD--------LLFVDTAGR--LHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HH-HTCS--------EEEECCCCC--CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred Hh-CCCC--------EEEecCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 21 1110 001122222 1222233455558999999999999994444 444444455666677766
Q ss_pred h-CCceEEEecCChhH
Q psy106 180 E-SGRTILITTHYIDE 194 (321)
Q Consensus 180 ~-~g~tIil~tH~l~~ 194 (321)
+ .|.|+|++||+.+.
T Consensus 245 ~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHCCSEEEEECTTSS
T ss_pred HHcCCcEEEEECCccc
Confidence 4 48999999998543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-21 Score=169.55 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=111.5
Q ss_pred CceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 23 PYVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 23 ~~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
.+.|+++.. .+++|++++|+||||||||||++.+++...+++|.+.+.+. + .+..+......
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~----------~------~~~~~~~~~~~- 71 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT----------E------ESRDSIIRQAK- 71 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES----------S------SCHHHHHHHHH-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc----------c------cCHHHHHHHHH-
Confidence 457899988 89999999999999999999999999888777776654321 1 12222111111
Q ss_pred HhCCCHHHHHHH----HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHH
Q psy106 102 IYGMSLQQIKEK----AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE--LLILDEPTSGI--DPVIAEEIWN 173 (321)
Q Consensus 102 ~~~~~~~~~~~~----~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~--lllLDEPtsgL--D~~~~~~i~~ 173 (321)
..+......... .+......+ . .......|.++.++...+.+...+|+ ++++||||+++ |+..+.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~ 148 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISY 148 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC-----C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHH
T ss_pred HhcchHHHHhhCCEEEEeccccccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHH
Confidence 111111000000 000000000 0 00113459999999988888888999 99999999887 9999999999
Q ss_pred HHHHHH-hCCceEEEecCCh--------hHHhh-cCEEEEEeCCE
Q psy106 174 HLLYLA-ESGRTILITTHYI--------DEAKK-SHMIGLMRKGI 208 (321)
Q Consensus 174 ll~~l~-~~g~tIil~tH~l--------~~~~~-~drv~il~~G~ 208 (321)
.|++++ +.|.|||++||+. ..++. ||++++|++..
T Consensus 149 ~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 149 YLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 999986 5699999999999 44666 99999998643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-22 Score=191.72 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=103.9
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCc----cE-EEECCccc---CeEEEEcCCCCCCCCCCH
Q psy106 24 YVLDKL-CMTVQKSTIYSLLGASGCGKTTLLSCITGQN--VLNG----GN-IHLSITSK---KQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 24 ~iL~~i-sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~--~p~~----G~-I~~~g~~~---~~ig~v~Q~~~l~~~ltv 92 (321)
..|+.+ ++.+++|++++|+||||||||||++++++.. +|++ |. +++++... +++++++|...+++. ++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-HH
Confidence 356666 6899999999999999999999999999988 6776 57 77776542 345555555443322 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCH
Q psy106 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-------HDPELLILDEPTSGIDP 165 (321)
Q Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-------~~P~lllLDEPtsgLD~ 165 (321)
.+|+.+. . . .-|.+|+|++.++++++ .+|+++|+||||+++|+
T Consensus 197 ~~ni~~~---------------------------~-~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 197 LKHIYVA---------------------------R-A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp GGGEEEE---------------------------E-C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred hhCEEEE---------------------------e-c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 2222111 0 0 01566777777777777 78999999999999998
Q ss_pred HH------------HHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecC
Q psy106 166 VI------------AEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 166 ~~------------~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~ 214 (321)
.. ..+++..|++++ +.|.|||+++|....... ++.......|+++++++
T Consensus 247 ~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 247 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 52 355666667765 469999999998876543 33344555666655544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-21 Score=187.08 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=99.5
Q ss_pred EeEEEEeCCCCCceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCccc-----CeEE
Q psy106 12 ENAYKRHSSKLPYVLDKLCM-------TVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSK-----KQLG 78 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl-------~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~-----~~ig 78 (321)
.+++.+|-......|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.+. ...+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 35555653333456777776 77899999999999999999999999999987 56664322211 1223
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+++|........+. .+ +||+||.++|++|++||
T Consensus 172 ~v~q~~~~~~~~~~-------------------------------------------~~----~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 172 LVNQREVHRDTLGF-------------------------------------------SE----ALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEEEBTTTBSCH-------------------------------------------HH----HHHHHTTSCCSEEEESC
T ss_pred ceeeeeeccccCCH-------------------------------------------HH----HHHHHhhhCcCEEecCC
Confidence 33333221111111 11 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
|| |++. ++.+.++++.|.||++++|+.+.+..|||++.|..|
T Consensus 205 p~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 205 MR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99 6555 444445567799999999999988669998877543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-22 Score=178.87 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=99.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQ 108 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~ 108 (321)
|++++|+||||||||||+++|+|+++ ++| |.++|.. .+++||++|+. .... +++. .. .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~-~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RV-GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---EC-CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---cc-cccCC
Confidence 78999999999999999999999998 899 8877643 26789999976 2211 1111 00 00000
Q ss_pred HHHHHHHHHHHHcCC-ccccCCCCccChHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhC
Q psy106 109 QIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRV-SLAI---TLLHDPELLILDE--PTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv-~iA~---aL~~~P~lllLDE--PtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
+ ... ....++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+++. .
T Consensus 70 ----------~-~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 70 ----------P-GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp ----------S-SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred ----------c-cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 0 000 013445567999999988 4455 6899999999999 899999976665555553 3
Q ss_pred CceEEE----ecCChhHHhhcCEEEEEeCCEEEEe
Q psy106 182 GRTILI----TTHYIDEAKKSHMIGLMRKGILLEE 212 (321)
Q Consensus 182 g~tIil----~tH~l~~~~~~drv~il~~G~i~~~ 212 (321)
..++|+ +||+.+ ...+|++..+.+|+|+..
T Consensus 135 ~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 445553 449863 122444444577888764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-21 Score=192.74 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=99.2
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECCc---ccCeEEEEc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSIT---SKKQLGFMP 81 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g~---~~~~ig~v~ 81 (321)
.+|.++||++.|++ +.+++++||+| +|+||||||||||+++|+|...|+.| .+.++.. ....+++++
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 57999999999988 67999999998 99999999999999999999875544 2222111 124589999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCC---EEEEeC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPE---LLILDE 158 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~---lllLDE 158 (321)
|++.+++.+|+.|++.+...... ....+.+...++ ..++.+++||++||||++.+|+ ++++||
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL~lde 147 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 147 (418)
T ss_dssp -----CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence 99888888999998876533211 100011111111 1456678889999999999999 999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHhCCceEEEecCChh
Q psy106 159 PT-SGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193 (321)
Q Consensus 159 Pt-sgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~ 193 (321)
|| .|||+... ++++++.. +.+||++.|..+
T Consensus 148 Pt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 148 PSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp C-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred CcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 99 69999873 44445543 678888877554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-20 Score=163.68 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=100.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCccEEEECCccc--CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----VLNGGNIHLSITSK--KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----~p~~G~I~~~g~~~--~~ig~v 80 (321)
+|+++|+++.|+. .++++ |++++|..++|+|+||||||||++.|+|.. .|+.|++...+... ..+- +
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~-l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-L 76 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-E
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEE-E
Confidence 6899999999974 37887 899999999999999999999999999998 78888775422100 0111 1
Q ss_pred cCCCCCCC----CCC---HHHHHHHHHHH-h---------C--CCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHH
Q psy106 81 PQQISLYP----EFT---IDEMICYYGLI-Y---------G--MSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQR 139 (321)
Q Consensus 81 ~Q~~~l~~----~lt---v~e~l~~~~~~-~---------~--~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQ 139 (321)
.+.+.+.. .-. ....+...... . . .......+.+..+++..++.. ...++..+|+||+|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 12222110 000 11112111110 0 0 001112223444555566653 35678889999999
Q ss_pred H-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 140 R-VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 140 R-v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
| +..|++++.+|+.+++|||||++|+.+..++++.|.++.++|.|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9 89999999999999999999999999999999999988765544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-24 Score=187.89 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
|++++|+||||||||||+++|++ |.+|.+.+++.+. ...|+++|....++..++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ----- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcC-----
Confidence 68999999999999999999997 6789999987543 345677776544445577777765432210000
Q ss_pred HHHHHHHHcCCccccCCCCcc--ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 113 KAEYLQALLHLNHFKRKCGSL--SGGQQRRVSLAI------TLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~L--SgGqkQRv~iA~------aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
...+++.+......+.+.++ |+||+|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+.+.+.+
T Consensus 74 -~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 74 -NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERY 148 (189)
T ss_dssp -CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTS
T ss_pred -CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccE
Confidence 00000000000001122345 899999988888 9999999888884 899998888 8888888666889
Q ss_pred EEEecCC-hhHHhh-cCEEEEEeCCEEEEecChhHH
Q psy106 185 ILITTHY-IDEAKK-SHMIGLMRKGILLEESPPKVL 218 (321)
Q Consensus 185 Iil~tH~-l~~~~~-~drv~il~~G~i~~~g~~~~l 218 (321)
+|.+||. +++++. ||+|+ ++|++++.|+++.+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 9999999 999987 99998 99999999988765
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-22 Score=178.08 Aligned_cols=141 Identities=19% Similarity=0.256 Sum_probs=97.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc-----CeEEEEcCCCCCCCCCCH----HHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK-----KQLGFMPQQISLYPEFTI----DEMICY 98 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv----~e~l~~ 98 (321)
.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+.+. ..++|+||++..|+.+++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 446799999999999999999999999999986 688888876543 357888887654443333 222211
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
....++. | +++ +..++..++++||| ||+.++.++++.+.
T Consensus 90 ~~~~yg~----------------------------~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 90 FGNYYGT----------------------------S---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp TTEEEEE----------------------------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred HhccCCC----------------------------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 1111111 1 111 33445568999999 99999999999875
Q ss_pred HhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 179 AESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++.||+++||++++++. |+ +.+| .++++++...
T Consensus 129 --~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 129 --HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp --TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred --CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 58999999999999865 32 5667 6788887654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=164.94 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---cCeEEEEcCCCCCCCCCCHHHHHHHHHHH-hCCCH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---KKQLGFMPQQISLYPEFTIDEMICYYGLI-YGMSL 107 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~ 107 (321)
.+++|++++|+||||||||||++.+++... .|.+. .|.. ..++.|+..+.. ..+........ .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~------~~~~~~r~~~~g~~~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDP------PTAIHHRLHALGAHLSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSC------HHHHHHHHHHHHTTSCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCC------HHHHHHHHHHHHhhcCh
Confidence 488999999999999999999999998654 45553 2332 235777765432 21111111111 11222
Q ss_pred HHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHH-h
Q psy106 108 QQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS--GIDPVI---AEEIWNHLLYLA-E 180 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts--gLD~~~---~~~i~~ll~~l~-~ 180 (321)
.....+++.+.+.. .++++..||+||+|++ ++++.+|+++++||||+ ++|+.. ..++++.|++++ +
T Consensus 97 ----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 97 ----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp ----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 22344556666544 5678999999998865 68889999999999999 999854 478888888886 5
Q ss_pred CCceEEEecCChhHHh
Q psy106 181 SGRTILITTHYIDEAK 196 (321)
Q Consensus 181 ~g~tIil~tH~l~~~~ 196 (321)
.|.|||+++|+.....
T Consensus 170 ~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAA 185 (279)
T ss_dssp HCCEEEEEEEC-----
T ss_pred cCCEEEEEecCCCccc
Confidence 6999999999987654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=147.36 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=70.4
Q ss_pred cCCCCccChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEE
Q psy106 127 KRKCGSLSGGQQRRVSLAITLLH----DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 127 ~~~~~~LSgGqkQRv~iA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
.+++..||||||||++||++|+. +|+++||||||+|||+.++..+.++|+++.+ +.++|++||+....+.||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEEE
Confidence 35678999999999999999974 4699999999999999999999999998864 468999999988777799998
Q ss_pred EE--eCCE
Q psy106 203 LM--RKGI 208 (321)
Q Consensus 203 il--~~G~ 208 (321)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 65 4564
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=144.75 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=100.2
Q ss_pred ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Q psy106 24 YVLDKLCM-TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLI 102 (321)
Q Consensus 24 ~iL~~isl-~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~ 102 (321)
+.|+++.. .+++|++++|+||||||||||++.+++ ++. + ++.|+..+..+ +.. .+.-....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~----------~v~~i~~~~~~----~~~-~~~~~~~~ 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-K----------KVAYVDTEGGF----SPE-RLVQMAET 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-S----------EEEEEESSCCC----CHH-HHHHHHHT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-C----------cEEEEECCCCC----CHH-HHHHHHHh
Confidence 35666665 689999999999999999999999999 322 2 23444433321 221 11111111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--QRRVSLAITLLHD-PELLILDEPTSGIDPVI--------AEEI 171 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--kQRv~iA~aL~~~-P~lllLDEPtsgLD~~~--------~~~i 171 (321)
.+...+ .+++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+.. ..++
T Consensus 69 ~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~ 134 (220)
T 2cvh_A 69 RGLNPE-------EALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQ 134 (220)
T ss_dssp TTCCHH-------HHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHH
T ss_pred cCCChH-------HHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHH
Confidence 222211 111211 223445554 5788889999986 99999999999999743 2445
Q ss_pred HHHHHHHHh-CCceEEEecCChh-------------HHhh-cCEEEEEeCC
Q psy106 172 WNHLLYLAE-SGRTILITTHYID-------------EAKK-SHMIGLMRKG 207 (321)
Q Consensus 172 ~~ll~~l~~-~g~tIil~tH~l~-------------~~~~-~drv~il~~G 207 (321)
++.|+++++ .|.|||+++|... .++. ||++++|++.
T Consensus 135 ~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 135 LQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 566777764 5899999999875 4555 9999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-20 Score=163.06 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=95.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
.+++|++++|+||||||||||+++|+|. |+.|.|.+++.+. +.++|++|+.. +.+++.+|+.+......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999997 7889999987542 23566666543 34678888765432210
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-c--cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy106 105 MSLQQIKEKAEYLQALLHLNH-F--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAES 181 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~-~--~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~ 181 (321)
.... ...++.++...++.. . +.++..+|+|++||+++||++.++|+++ +|+...+.+++.+..+.+.
T Consensus 81 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 81 KEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred ccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0000 000000001111211 1 3456789999999999999999999876 6898888888877665433
Q ss_pred CceEEEec
Q psy106 182 GRTILITT 189 (321)
Q Consensus 182 g~tIil~t 189 (321)
+..+|.++
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 33344443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-21 Score=174.09 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCccEEEECCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHH-----
Q psy106 35 KSTIYSLLGASGCGKTTLLSCIT---GQNVLNGGNIHLSITSK-----KQLGFMPQQISLYPEFTIDEMICYYGL----- 101 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~----- 101 (321)
++++++|+||||||||||+++|+ |+..|++|++.+++.+. ..+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 99999999998765321 235566788778888899998876432
Q ss_pred ---HhCCCHHHHHHHHHHHHHHc--C------------Ccc-ccCCCCccChHHHHHHHHHHHH-hcCCCEEEEe----C
Q psy106 102 ---IYGMSLQQIKEKAEYLQALL--H------------LNH-FKRKCGSLSGGQQRRVSLAITL-LHDPELLILD----E 158 (321)
Q Consensus 102 ---~~~~~~~~~~~~~~~ll~~~--~------------l~~-~~~~~~~LSgGqkQRv~iA~aL-~~~P~lllLD----E 158 (321)
..+.+... ..+..+.... + +.. .++++.+||| |+ +|+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 11222211 1122222111 1 111 3567889999 66 778 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g 182 (321)
||++||+.++..+.+.++++.+++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHhH
Confidence 999999999999999999887653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-19 Score=176.03 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=115.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCcccCeEEEEcC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSKKQLGFMPQ 82 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~~~ig~v~Q 82 (321)
.+++++ ++.|++ .+ |+++||++++|++ +||+||||||||||+|+|+|+.- .|.-.. .+...+.++|++|
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 366777 899987 55 9999999999999 99999999999999999999842 222111 1122357999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhC-C-CH---HHHHHHHHHHHHHc-CCc----c-ccCCC-----------CccChHHHHH
Q psy106 83 QISLYPEFTIDEMICYYGLIYG-M-SL---QQIKEKAEYLQALL-HLN----H-FKRKC-----------GSLSGGQQRR 140 (321)
Q Consensus 83 ~~~l~~~ltv~e~l~~~~~~~~-~-~~---~~~~~~~~~ll~~~-~l~----~-~~~~~-----------~~LSgGqkQR 140 (321)
++.+++.+|+.||+.++..... . .. .........++... ++. . .+.++ ..|+-..
T Consensus 90 ~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--- 166 (427)
T 2qag_B 90 ESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--- 166 (427)
T ss_dssp C--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---
T ss_pred cCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---
Confidence 9988888999888765432100 0 00 11222333333333 221 0 12221 2455555
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEecCCh
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY-LAESGRTILITTHYI 192 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~-l~~~g~tIil~tH~l 192 (321)
+.++++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.+-
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999999999999986 777899999988753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-21 Score=186.64 Aligned_cols=167 Identities=11% Similarity=0.162 Sum_probs=118.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
+|+++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 5788899999976 5699999999999999999999999999999999999999999999865432
Q ss_pred CeEEEEcCCCCCCCCCC------------HHHHHHHHH-------------------H----------HhCCC-HHHHH-
Q psy106 75 KQLGFMPQQISLYPEFT------------IDEMICYYG-------------------L----------IYGMS-LQQIK- 111 (321)
Q Consensus 75 ~~ig~v~Q~~~l~~~lt------------v~e~l~~~~-------------------~----------~~~~~-~~~~~- 111 (321)
.+++|++|++.+|...+ +.|.+.... . ..... ..+.+
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 46899999988775321 222221100 0 00000 00100
Q ss_pred --HHHHHHHHHcCCccccC-CCCccChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy106 112 --EKAEYLQALLHLNHFKR-KCGSLSGGQQRRVSLAITLLH------DPELLILDEPTSGIDPVIAEEIWNHLLYLAE 180 (321)
Q Consensus 112 --~~~~~ll~~~~l~~~~~-~~~~LSgGqkQRv~iA~aL~~------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~ 180 (321)
+.+.+....+.++..|. ...++|+|++|++..|++++. +|+++. ||++|+.+..++++.|.++.+
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 00111111122222342 335789999999999999988 688886 999999999999999988653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-19 Score=170.83 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=99.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-------cCeEEEEc-CCCCCCCCCCHHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-------KKQLGFMP-QQISLYPEFTIDEMIC 97 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-------~~~ig~v~-Q~~~l~~~ltv~e~l~ 97 (321)
++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.. ...++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-----------
Confidence 399999999999999999999999999999999999999999998642 13577777 44321
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+++++.+|..|+.++..+|+.+++|||.. .+..+.+..
T Consensus 234 ----------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~ 272 (361)
T 2gza_A 234 ----------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINV 272 (361)
T ss_dssp ---------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHH
T ss_pred ----------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHH
Confidence 013344578889999999999999999986 345666766
Q ss_pred HHhCCceEEEecCChhHHhhcCEEEEEeCC
Q psy106 178 LAESGRTILITTHYIDEAKKSHMIGLMRKG 207 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~~~~~drv~il~~G 207 (321)
+.....|++.++|..+....+||+..+..+
T Consensus 273 l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 273 AASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 654456789999997744559998888765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-20 Score=180.17 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=110.6
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCc----cEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 25 VLDKLCMTVQK--STIYSLLGASGCGKTTLLSCITGQNVLNG----GNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 25 iL~~isl~i~~--Gei~~llGpNGaGKSTLl~~l~Gl~~p~~----G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |++.+++... .....++.... +++.+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-------~~~~~~~~~~~-~~I~~ 228 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-------GDEQAMQYSDY-PQMAL 228 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-------SCTTSSCTTTH-HHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-------CCcccCChhHH-HHHHH
Confidence 35679999999 99999999999999999999999999998 7766532100 00111111122 34443
Q ss_pred HHHHhCCCHHHHHHHHHHHHH---HcCCccccCCCCccChHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQA---LLHLNHFKRKCGSLSGGQQRRVSLAITLL-HDPELLILDE---PT------SGIDP 165 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~---~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-~~P~lllLDE---Pt------sgLD~ 165 (321)
.... .. .......+ .++.+..+..+..+|+|++|+..+++++. .+|++++||| |+ +++|+
T Consensus 229 ~~q~-----~~--~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 229 GHQR-----YI--DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp HHHH-----HH--HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------C
T ss_pred HHHH-----HH--HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccH
Confidence 2110 00 00000000 11111123344567788888888888874 6999999999 65 58999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHH
Q psy106 166 VIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLL 219 (321)
Q Consensus 166 ~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~ 219 (321)
..+..+.+.++++. +.|.+|++++|. .+.++ |+++.++++ ++..++++++.
T Consensus 302 ~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 302 KQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 99999999998875 458999999975 44444 666655543 33455555553
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-18 Score=162.85 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=88.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-ccEEEECCccc-----CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLN-GGNIHLSITSK-----KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~-~G~I~~~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|...+.+. ..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~-------------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE-------------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE--------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee--------------
Confidence 455554 7899999999999999999999999999998 89997654332 2455555530
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
+++ .+..+ +.+|+++|..+|+++++|||+ |+.... ..++.
T Consensus 191 ----------------------~g~-----~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~- 230 (372)
T 2ewv_A 191 ----------------------VGE-----DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRA- 230 (372)
T ss_dssp ----------------------BTT-----TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-
T ss_pred ----------------------cCC-----CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-
Confidence 121 12334 469999999999999999999 776543 33433
Q ss_pred HhCCceEEEecCChhHHhhcCEEE
Q psy106 179 AESGRTILITTHYIDEAKKSHMIG 202 (321)
Q Consensus 179 ~~~g~tIil~tH~l~~~~~~drv~ 202 (321)
+..|.+|+.++|+.+..+.|||++
T Consensus 231 ~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 231 AETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HhcCCEEEEEECcchHHHHHHHHH
Confidence 356899999999966333366653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-19 Score=154.73 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=73.3
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccC----eEEEEcCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKK----QLGFMPQQIS 85 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~----~ig~v~Q~~~ 85 (321)
+.+++++.|++ +.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.. .-.++||++.
T Consensus 9 ~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~ 85 (158)
T 1htw_A 9 PDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD 85 (158)
T ss_dssp CSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE
T ss_pred CCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc
Confidence 34456788887 66999999999999999999999999999999999999 99999999886541 1137999998
Q ss_pred CCCCCCHHHHHHHH
Q psy106 86 LYPEFTIDEMICYY 99 (321)
Q Consensus 86 l~~~ltv~e~l~~~ 99 (321)
+| .+|+.||+.+.
T Consensus 86 l~-~ltv~e~l~~~ 98 (158)
T 1htw_A 86 LY-RLADPEELEFM 98 (158)
T ss_dssp CT-TCSCTTHHHHS
T ss_pred cc-cCCcHHHHHHc
Confidence 88 89999998653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=142.83 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=85.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG--QNVL-----NGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p-----~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
-+++|++++|+||||||||||++.+++ +.+| ..|.+++++. ..+ +... +.-.....+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~-----------~~~----~~~~-~~~~~~~~g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE-----------GTF----RPER-LLAVAERYG 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-----------SCC----CHHH-HHHHHHHTT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC-----------CCc----CHHH-HHHHHHHcC
Confidence 489999999999999999999999999 5665 4455555433 111 1111 111111222
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HH
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRR-VSLAITLL--HDPELLILDEPTSGIDPV-------I-----AE 169 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQR-v~iA~aL~--~~P~lllLDEPtsgLD~~-------~-----~~ 169 (321)
...++ +++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+. . ..
T Consensus 84 ~~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 84 LSGSD-------VLDNVA------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp CCHHH-------HHHTEE------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCHHH-------HhhCeE------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 22211 111111 112244444332 33333343 589999999999999985 3 34
Q ss_pred HHHHHHHHHH-hCCceEEEecCChhHH-------------------h-hcCEEEEEeCC
Q psy106 170 EIWNHLLYLA-ESGRTILITTHYIDEA-------------------K-KSHMIGLMRKG 207 (321)
Q Consensus 170 ~i~~ll~~l~-~~g~tIil~tH~l~~~-------------------~-~~drv~il~~G 207 (321)
+++..+.+++ +.|.|||+++|..... + .||++++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 4555666665 4599999999976543 2 38999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-17 Score=157.44 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEEC-Ccc-----cCeEEEEcCCCCCCCCCCHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLS-ITS-----KKQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~-g~~-----~~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
.++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.+. |.. ...++++||+..+++..++.++.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-
Confidence 46777765 4899999999999999999999999999 999999886 532 35799999999888888888741
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL 147 (321)
+++.+.++..+.+.++++.+++.. .++++.+|| ||+||++||+++
T Consensus 283 ----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 ----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 234555555566677888888865 688899999 999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-20 Score=175.10 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCccEEEECCccc------------------------CeEEEE---c
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN--------VLNGGNIHLSITSK------------------------KQLGFM---P 81 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~--------~p~~G~I~~~g~~~------------------------~~ig~v---~ 81 (321)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|... +.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 78999999877542 125555 5
Q ss_pred CCCCCCCCCCHHHHHHHH--HHH-hCC-CHHHHHH--HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 82 QQISLYPEFTIDEMICYY--GLI-YGM-SLQQIKE--KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~--~~~-~~~-~~~~~~~--~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
|++.+++++++.|+..+. ... ... ..+.... .++.++..+++....+...++|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 666655566666655432 000 000 0000000 011111122332221222379999999999999999999987
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHh
Q psy106 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAK 196 (321)
Q Consensus 156 LDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~ 196 (321)
||| .++.+.+++++ .+.||+++||+...++
T Consensus 164 -de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 164 -GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLG 193 (318)
T ss_dssp -SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGG
T ss_pred -CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHH
Confidence 999 67888888875 5899999999754443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-17 Score=166.09 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=104.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEF 90 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~l 90 (321)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4789999999999999999999999999999999999999999964321 3589999998888888
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh-cCC-CEEEEeCCCCCCCHHHH
Q psy106 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL-HDP-ELLILDEPTSGIDPVIA 168 (321)
Q Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~-~~P-~lllLDEPtsgLD~~~~ 168 (321)
++++|+.+... .+.. . .+++..|... .. ..|-.-.+|++.+++++. ..| +++|...|++|.|...
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~--~~-~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~- 429 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQ--NK-SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS- 429 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCC--CH-HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccc--hh-hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH-
Confidence 99999987532 1110 0 0111111111 10 112223358888998774 456 4565666998876552
Q ss_pred HHHHHHHHHHH-hCCceEEEecCChhH
Q psy106 169 EEIWNHLLYLA-ESGRTILITTHYIDE 194 (321)
Q Consensus 169 ~~i~~ll~~l~-~~g~tIil~tH~l~~ 194 (321)
.++.++ .-|.|.+++|| ++.
T Consensus 430 -----~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 430 -----QAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp -----HHHHHHHHTCCSEEEEEC-GGG
T ss_pred -----HHHHHHhhcCCCEEEEEc-CCC
Confidence 344444 35899999999 555
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-17 Score=155.48 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=106.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------------CeEEEEcCCCCCCCCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------------KQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------------~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+.+. ..+.|++|...++|.+++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999977653 1356999999999999999998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHL 175 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll 175 (321)
.+.... +.. . .+++..+... .... +++.-.+++++..++.+++||.++. +.+.+.+
T Consensus 205 ~~~~~~-~~d------~--vliDtaG~~~~~~~l-------~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~ 261 (328)
T 3e70_C 205 QHAKAR-GID------V--VLIDTAGRSETNRNL-------MDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQA 261 (328)
T ss_dssp HHHHHH-TCS------E--EEEEECCSCCTTTCH-------HHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred HHHHhc-cch------h--hHHhhccchhHHHHH-------HHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence 764321 100 0 0111112211 1122 3333458999999998999996554 3455556
Q ss_pred HHHH-hCCceEEEecCChhH---------Hhh-cCEEEEEeCCEE
Q psy106 176 LYLA-ESGRTILITTHYIDE---------AKK-SHMIGLMRKGIL 209 (321)
Q Consensus 176 ~~l~-~~g~tIil~tH~l~~---------~~~-~drv~il~~G~i 209 (321)
+.+. +.+.|+|++||.-.. +.. .-.|.++..|+-
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 6665 458999999994321 112 346677766653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=137.08 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=79.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
+|++++|+.++|.||||||||||++++++.+.|++|.. +.| ++..+.+.....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~----------~~~~~~~~~~~~-------- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYF----------FDTKDLIFRLKH-------- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCE----------EEHHHHHHHHHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEE----------EEHHHHHHHHHH--------
Confidence 56778899999999999999999999999987766621 111 233333221110
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEe
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILIT 188 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~ 188 (321)
...... .. -+...+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++
T Consensus 85 -------~~~~~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 85 -------LMDEGK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -------HHHHTC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------HhcCch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 000000 00 0122244999999999985 999999999999998887789999999
Q ss_pred cCChh
Q psy106 189 THYID 193 (321)
Q Consensus 189 tH~l~ 193 (321)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=147.20 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCCccChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCE
Q psy106 128 RKCGSLSGGQQRRV------SLAITLLHD-PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHM 200 (321)
Q Consensus 128 ~~~~~LSgGqkQRv------~iA~aL~~~-P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~dr 200 (321)
+++.+||||||||+ ++|+||+.+ |+++||||||+|||+..+..+.+.|.++.+ +.+||++||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHHHhhCCE
Confidence 45679999999988 567899999 999999999999999999999999988743 4689999999875445999
Q ss_pred EEEEe
Q psy106 201 IGLMR 205 (321)
Q Consensus 201 v~il~ 205 (321)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-18 Score=175.55 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=112.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------CeEEEEcCCCC-----------
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------KQLGFMPQQIS----------- 85 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------~~ig~v~Q~~~----------- 85 (321)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.+... ..+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 3478899999999999999999999999999999999999999999977541 34566655422
Q ss_pred -----------CCCCCCHHHHHHHHHHHh-CCC------HHHHHHHHHHHHHH-cCCcc-----cc---CCCCccChHHH
Q psy106 86 -----------LYPEFTIDEMICYYGLIY-GMS------LQQIKEKAEYLQAL-LHLNH-----FK---RKCGSLSGGQQ 138 (321)
Q Consensus 86 -----------l~~~ltv~e~l~~~~~~~-~~~------~~~~~~~~~~ll~~-~~l~~-----~~---~~~~~LSgGqk 138 (321)
++..++..|++.+....+ +.. .....+.+..+... .++.. .+ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 123456666554443332 210 01111222222111 11211 11 23446899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--ecCChhHHhh-cC
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI--TTHYIDEAKK-SH 199 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil--~tH~l~~~~~-~d 199 (321)
||.++|. + | |+||||.....+++.+.++.+.|.|+++ +||++++++. |+
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9987752 2 7 9999999888888888777767899885 9999999876 74
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-16 Score=154.45 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=92.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----------CCCccEEEECCcccCeEEEEcCCCCCCCCCCHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN-----------VLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDE 94 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e 94 (321)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|+.|.+.+++. .--.+.+.+.+.... .+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~---~~~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---ERFTLADIPGIIEGA--SE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS---CEEEEEECCCCCCCG--GG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc---ceEEEEeccccccch--hh
Confidence 47999999999999999999999999999999983 333444433320 011233334333211 01
Q ss_pred HHHHHHHHhCCCHHHHH--HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy106 95 MICYYGLIYGMSLQQIK--EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~--~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 172 (321)
+ .++.....+ ++++.++..+++. ++++.+||+||+|++++|++|+.+|.++++ +.+|+..+ ..+
T Consensus 222 ~-------~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 222 G-------KGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp S-------CCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred h-------hhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 0 011111000 1111122222222 456788999999999999999999999999 99999877 444
Q ss_pred HHHHH-HHhCCceEEEecC
Q psy106 173 NHLLY-LAESGRTILITTH 190 (321)
Q Consensus 173 ~ll~~-l~~~g~tIil~tH 190 (321)
+.+.+ +.+.|.+++++|.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 44444 4456777776664
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=128.29 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=72.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
+|+++ +|+.++|+||||||||||++++++...+ +| .++.|++..... ..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g---------~~~~~~~~~~~~-~~--------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG---------KNAAYIDAASMP-LT--------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT---------CCEEEEETTTSC-CC---------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC---------CcEEEEcHHHhh-HH---------------
Confidence 45666 8999999999999999999999998876 45 123344432211 11
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRT 184 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~t 184 (321)
+++.+|++|++|||++ +|+..++.+++++.++.++|++
T Consensus 79 -----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~ 116 (149)
T 2kjq_A 79 -----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKG 116 (149)
T ss_dssp -----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCC
T ss_pred -----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCc
Confidence 2357899999999998 6666689999999998877888
Q ss_pred -EEEecCC
Q psy106 185 -ILITTHY 191 (321)
Q Consensus 185 -Iil~tH~ 191 (321)
+|++||.
T Consensus 117 ~iiits~~ 124 (149)
T 2kjq_A 117 FLLLGSEY 124 (149)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 8888884
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-18 Score=167.26 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=119.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCccEEEECCccc----------Ce---EEEEcCCCCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG------------QNVLNGGNIHLSITSK----------KQ---LGFMPQQISL 86 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G------------l~~p~~G~I~~~g~~~----------~~---ig~v~Q~~~l 86 (321)
++++|..+||+|+||||||||+|+|+| .+.|+.|.+.+.+... +. ..++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 6779999999987321 22 3478888888
Q ss_pred CCCCCHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCC--CEEEEeCCCCC
Q psy106 87 YPEFTIDEMI--CYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDP--ELLILDEPTSG 162 (321)
Q Consensus 87 ~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P--~lllLDEPtsg 162 (321)
++..+..|++ .|...++.. +.++..+... .+..+..+|+++ +| ++.++|||+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~---------d~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV---------DAIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC---------SEEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH---------HHHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 8888776655 333322211 0111111111 134555577653 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCceEEEecCChhHHhh-cCEEE-EEeCC-EEEEecCh
Q psy106 163 IDPVIAEEIWNHLLYL-AESGRTILITTHYIDEAKK-SHMIG-LMRKG-ILLEESPP 215 (321)
Q Consensus 163 LD~~~~~~i~~ll~~l-~~~g~tIil~tH~l~~~~~-~drv~-il~~G-~i~~~g~~ 215 (321)
+|+...++.++.+... .+.|.|++ +|++.+++. |+++. +|++| +++..+++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999988 66688864 999999977 99998 99999 88776654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-18 Score=163.94 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=117.8
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCccEEEECCcc--
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKS-------TIYSLLGASGCGKTTLLSCITGQN----VLNGGNIHLSITS-- 73 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~G-------ei~~llGpNGaGKSTLl~~l~Gl~----~p~~G~I~~~g~~-- 73 (321)
.+++.+++++.||+ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .|++|++..++.+
T Consensus 17 ~~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 17 QFLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CTTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred HHcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 34667788888887 56999999999887 899999999999999999999987 7778877654432
Q ss_pred -------cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHH
Q psy106 74 -------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMS----LQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 74 -------~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~ 142 (321)
...|+|++|...+.+ ++.|++......++.. .....+.+...+..+.+.....++..||+|++||++
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCS
T ss_pred HHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcC
Confidence 246999999887765 7888774333222211 111122333333334443356778899999999986
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCE
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHM 200 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~dr 200 (321)
++ .+|||....++.++|++.++ .+ ++|+.+.+.. |++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 55 78899999999999988763 34 3688777655 554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-18 Score=169.72 Aligned_cols=139 Identities=16% Similarity=0.039 Sum_probs=96.6
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------C
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------------K 75 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------------~ 75 (321)
++++++++.|+. ..+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.+.+. +
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHH--HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 455666666654 4477887 54 89999999999999999999999999999999998865432 2
Q ss_pred eEEEEc---------CCCCC--CCC----CCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHcCCccccCCCCccChH
Q psy106 76 QLGFMP---------QQISL--YPE----FTIDEMICYYGLIY----GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG 136 (321)
Q Consensus 76 ~ig~v~---------Q~~~l--~~~----ltv~e~l~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG 136 (321)
++|+.| |+|.+ +.+ .|+.+++.+...-+ ........+.+. .+..+++... ..+.+||||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~-~~~~~LSgg 297 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPF-LISSSLLGV 297 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHH-HHHHHEEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHH-HHHHHHHHH
Confidence 345544 88765 343 57888887643111 001111112233 3445566543 367899999
Q ss_pred HHHHHHHHHHHhcCCCEEE
Q psy106 137 QQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 137 qkQRv~iA~aL~~~P~lll 155 (321)
|+|| |||+|+.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-16 Score=148.20 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=83.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc---------CeEEEEcCCCCCC-----CCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---------KQLGFMPQQISLY-----PEFTIDE 94 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~---------~~ig~v~Q~~~l~-----~~ltv~e 94 (321)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+.. +.+||++|.|.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 66532 2589999998654 67899 8
Q ss_pred HH--HHH------HHHhCC-CHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHH
Q psy106 95 MI--CYY------GLIYGM-SLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAI 145 (321)
Q Consensus 95 ~l--~~~------~~~~~~-~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~ 145 (321)
++ .|. .++++. ...+...++.++++.+++.. .++++..|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77 343 122221 22233456788899999964 57888999999999999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-15 Score=138.11 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCccEEEECCccc-------CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITG-QNVLNGGNIHLSITSK-------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G-l~~p~~G~I~~~g~~~-------~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
.+.|.||||+||||+++++++ +..|+.|.+.++|... ..+++++|...+.-+.+- . .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence 389999999999999999999 8899999998876432 457788876643211110 0 0001111
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEec
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITT 189 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t 189 (321)
.++.++.+.+... .+... +||| +..+|+++|+|||++ ||+..+..+++.+.+.. .+.++|++|
T Consensus 109 ~~~~i~~~~~~~~---~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t 171 (354)
T 1sxj_E 109 IQELLKEVAQMEQ---VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVC 171 (354)
T ss_dssp HHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEE
T ss_pred HHHHHHHHHHhcc---ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEe
Confidence 2222222211111 11222 5676 788999999999999 99999999999998764 468999999
Q ss_pred CChhHH
Q psy106 190 HYIDEA 195 (321)
Q Consensus 190 H~l~~~ 195 (321)
|+++.+
T Consensus 172 ~~~~~l 177 (354)
T 1sxj_E 172 DSMSPI 177 (354)
T ss_dssp SCSCSS
T ss_pred CCHHHH
Confidence 998654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-17 Score=155.82 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=99.3
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCcc
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTV-------------------QKSTIYSLLGASGCGKTTLLSCITGQNV--LNGG 65 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i-------------------~~Gei~~llGpNGaGKSTLl~~l~Gl~~--p~~G 65 (321)
.+|+++||++.|+ ++++++|+++ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3588899999994 3899999988 9999999999999999999999999988 9999
Q ss_pred EEEE---CCccc-----CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHH
Q psy106 66 NIHL---SITSK-----KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ 137 (321)
Q Consensus 66 ~I~~---~g~~~-----~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq 137 (321)
+|.+ +|... +.+|++ |...+++.+++.+++.+...+..... . ...+....+.+
T Consensus 112 ~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~---i~~P~~~~~~~- 172 (308)
T 1sq5_A 112 RVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------N---VTAPVYSHLIY- 172 (308)
T ss_dssp CEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------C---EEECCEETTTT-
T ss_pred eEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------c---eeccccccccc-
Confidence 9999 77543 347788 87777888999999887655432110 0 11111122222
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 138 QRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 138 kQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
+|+..+.+.+.+|+++|+|.|....++
T Consensus 173 -~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 173 -DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -CcccccceecCCCCEEEECchhhCCCc
Confidence 333333345678999999999998874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-16 Score=147.55 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH----H--hCCCH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL----I--YGMSL 107 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~----~--~~~~~ 107 (321)
.++.++||.||+|||||||.+.|.+++.+. | ...+.+.+|+|+..+++. +..+|+.+... . .+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccccCCh-HHHHHHhccccccchhhhccCcc
Confidence 478899999999999999999999998763 2 113345566999887754 78888876420 1 11121
Q ss_pred HHHHHHHHHHHHHcCCc------c---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy106 108 QQIKEKAEYLQALLHLN------H---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVI 167 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~------~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~ 167 (321)
....+...+.++.+... . ...+-..+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 11112233333333221 1 234457899999999999833333999999999999999863
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-14 Score=135.53 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCcc-----EEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSC--ITGQNVLNGG-----NIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYG 104 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~--l~Gl~~p~~G-----~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 104 (321)
-|++|++++|+||||||||||++. +.++.+++.| .++++++ ..+ +. +.+...+...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E-----------~~~----~~-~rl~~~a~~~g 237 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE-----------GTF----RP-VRLVSIAQRFG 237 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-----------SCC----CH-HHHHHHHHHTT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC-----------Ccc----CH-HHHHHHHHHcC
Confidence 589999999999999999999994 4577777554 4444433 211 11 11221222223
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCccChHH--HHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHH------------
Q psy106 105 MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQ--QRRVSLAITLL--HDPELLILDEPTSGIDPVIA------------ 168 (321)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGq--kQRv~iA~aL~--~~P~lllLDEPtsgLD~~~~------------ 168 (321)
.... .+++.+. +.....++ .+.+.-+.+++ .+|+++++|||++.+|+...
T Consensus 238 l~~~-------~vleni~-------~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 238 LDPD-------DALNNVA-------YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp CCHH-------HHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred CChH-------hHhhcEE-------EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 3221 1111111 11112233 33333333333 57999999999999997533
Q ss_pred HHHHHHHHHHHh-CCceEEEecCCh-------------------hHHhh-cCEEEEEeCC
Q psy106 169 EEIWNHLLYLAE-SGRTILITTHYI-------------------DEAKK-SHMIGLMRKG 207 (321)
Q Consensus 169 ~~i~~ll~~l~~-~g~tIil~tH~l-------------------~~~~~-~drv~il~~G 207 (321)
.++++.|+++++ .|.|||+++|.. ..++. ||.+++|+++
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 567788888874 599999999982 12344 8998888875
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-17 Score=140.38 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---ccEEEECCccc-------------CeEE----EEcCCCCCCCCCCHHHHH
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN---GGNIHLSITSK-------------KQLG----FMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~---~G~I~~~g~~~-------------~~ig----~v~Q~~~l~~~ltv~e~l 96 (321)
++++|+||||||||||+++|+|+++|+ .|.|.+++.+. +++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 589999999999999999999999998 89999876541 2466 7888765440 00
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-c-CCccccCCCCccChHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CC
Q psy106 97 CYYGLIYGMSLQQIKEKAEYLQAL-L-HLNHFKRKCGSLSGGQQRRVSLAITLLHDPELL-------ILDEPTSG---ID 164 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~-~-~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~ll-------lLDEPtsg---LD 164 (321)
. . .+....+.++++. + +++. .-...|||||+||++||||++.+|++. .=|.|..+ +|
T Consensus 77 -------~-~-~~~~a~l~~~i~~~l~g~dt--~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 77 -------V-S-EEEGNDLDWIYERYLSDYDL--VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp -------C-C-HHHHTCHHHHHHHHTTTCSE--EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred -------C-C-hhhhhCHHHHHHhhCCCCCE--EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 0 0 0101122333333 2 3321 111239999999999999999999873 23554322 33
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy106 165 PVIAEEIWNHLLYLAESG 182 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~~g 182 (321)
......+.+.|.+...+|
T Consensus 146 ~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 146 RDEVERIAEFILSLLREG 163 (171)
T ss_dssp TTCHHHHHHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 445567777776655444
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-16 Score=139.01 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCC----CHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGM----SLQ 108 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~----~~~ 108 (321)
.++|+++||+||||||||||+++|+|+++|+ | ..+|+++++...++. +..+++.... ..+. ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHH
Confidence 5789999999999999999999999999875 4 236677766543322 2222221000 0111 111
Q ss_pred HHHHHHHHHHHHcCCc--cccCCCCccChHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 109 QIKEKAEYLQALLHLN--HFKRKCGSLSGGQQRRVSLA-ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 109 ~~~~~~~~ll~~~~l~--~~~~~~~~LSgGqkQRv~iA-~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
...+.+..+...-.+. ..++ ...+|+||+||+++| ++++.++.++++|||. +. ++.+.--.+
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~---~l~~~~d~~ 151 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR---DLTAIWDVS 151 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG---GGGGTCSEE
T ss_pred HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH---HHHHhcCEE
Confidence 1122222222211121 1233 345799999999998 8888888888888883 11 112222467
Q ss_pred EEecCChhHH-hh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 186 LITTHYIDEA-KK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 186 il~tH~l~~~-~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
++++++.+.. ++ +.|. ++.|. +.+++..
T Consensus 152 i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~ 181 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQRW--LDHGL-----NHDAAVA 181 (208)
T ss_dssp EEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHH
Confidence 8888988873 44 6662 34453 5555544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=128.36 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=94.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
++|++++++|||||||||+++.|++.+.+++| +++.++.+++. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------~~V~lv~~D~~---r~~a~eqL~~~~~------------ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------KKIAFITTDTY---RIAAVEQLKTYAE------------ 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------CCEEEEECCCS---STTHHHHHHHHHT------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CEEEEEecCcc---cchHHHHHHHHHH------------
Confidence 57999999999999999999999999988777 35677777662 3355555543221
Q ss_pred HHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCceEEE-ec
Q psy106 114 AEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA---ESGRTILI-TT 189 (321)
Q Consensus 114 ~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~---~~g~tIil-~t 189 (321)
..+++... ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ +|
T Consensus 159 ------~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 159 ------LLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp ------TTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred ------hcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 12222110 112 2334556664 4999999999 99999887766666554433 12345555 59
Q ss_pred CChhHHhh-cCEEEEEeCCEEEEe
Q psy106 190 HYIDEAKK-SHMIGLMRKGILLEE 212 (321)
Q Consensus 190 H~l~~~~~-~drv~il~~G~i~~~ 212 (321)
|..+++.. |+++..+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 99888876 877666666777664
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-17 Score=154.84 Aligned_cols=135 Identities=15% Similarity=0.157 Sum_probs=95.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcCCC-CCCCCCCH
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQQI-SLYPEFTI 92 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q~~-~l~~~ltv 92 (321)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.+.++|.+. ++++++||.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45889999999999 999999999999999999999876 6888877542 3466777764 34455555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC----------
Q psy106 93 DEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS---------- 161 (321)
Q Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts---------- 161 (321)
.|++.......+ . ... .... ..++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~---~---~~~------~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 109 FDEVDALCPRRS---D---RET------GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eehhhhhhcccC---C---Ccc------hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 555543211100 0 000 0111 135667889999999999999999999985 99864
Q ss_pred --CCCHHHHHHHHHHH
Q psy106 162 --GIDPVIAEEIWNHL 175 (321)
Q Consensus 162 --gLD~~~~~~i~~ll 175 (321)
--|...+.++++.+
T Consensus 175 ~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 175 VGLPPPADRLAILKTI 190 (274)
T ss_dssp CCSCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHH
Confidence 34777777777654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-18 Score=154.49 Aligned_cols=160 Identities=16% Similarity=0.077 Sum_probs=61.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCC------------CccEEEECCcccCeEEEEcCCCCCCCCC
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT-GQNVL------------NGGNIHLSITSKKQLGFMPQQISLYPEF 90 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~-Gl~~p------------~~G~I~~~g~~~~~ig~v~Q~~~l~~~l 90 (321)
...+++||++++|+++||+||||||||||+++|+ |+.++ +.|++ + .++|.|+++..+..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-----g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-----GKDYYFVDREEFLRL 87 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-----TTTBEECCHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-----CCeEEEecHHHhhhh
Confidence 4678999999999999999999999999999999 99843 33322 1 233555544333222
Q ss_pred CHHHHHHH----HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHH-HHH-HHHhcCCCEEEEeCCCCCCC
Q psy106 91 TIDEMICY----YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV-SLA-ITLLHDPELLILDEPTSGID 164 (321)
Q Consensus 91 tv~e~l~~----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv-~iA-~aL~~~P~lllLDEPtsgLD 164 (321)
+..+++.. ....++.+.. .+...++....-..+-.+. -....+++. .-+ ..++..|+..++||++.+.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~ 162 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR 162 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECT----THHHHHHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred hhcCceehhhhhccccCCCCHH----HHHHHHHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence 22222110 0011111111 1222222211100111110 011223333 111 23456778888899999998
Q ss_pred HHHHHHHHHHHHHHHh-----CCceEEEecCChhHH
Q psy106 165 PVIAEEIWNHLLYLAE-----SGRTILITTHYIDEA 195 (321)
Q Consensus 165 ~~~~~~i~~ll~~l~~-----~g~tIil~tH~l~~~ 195 (321)
..+...+.+.+..... ....+++++|+++++
T Consensus 163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp ---------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 8887777776655431 123444555555544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-15 Score=140.70 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=71.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc---------CeEEEEcCCCC-------------
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK---------KQLGFMPQQIS------------- 85 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~---------~~ig~v~Q~~~------------- 85 (321)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|... +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999998 66532 35899999985
Q ss_pred ---CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc-c-ccCCCCccCh
Q psy106 86 ---LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN-H-FKRKCGSLSG 135 (321)
Q Consensus 86 ---l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~-~~~~~~~LSg 135 (321)
+++++|+ +|+.|....+ ..+...++.++++.++++ . .++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4788888 8887642111 122345678889999995 3 5777888885
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=128.39 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCC
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPE 89 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ 89 (321)
.++++++.|+. .. ++++|+ +|++++++||||+||||+++.|++++.+.+|+|.+.+.+.++.+
T Consensus 78 ~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~----------- 140 (295)
T 1ls1_A 78 VYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA----------- 140 (295)
T ss_dssp HHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-----------
T ss_pred HHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-----------
Confidence 45567777865 32 788998 99999999999999999999999999998898887654432110
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q psy106 90 FTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP-TSGIDPVIA 168 (321)
Q Consensus 90 ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP-tsgLD~~~~ 168 (321)
..+.+. ...+..+++..... ...+..+.+|.+++++...+++++|+||| ++++|....
T Consensus 141 --~~~ql~------------------~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 141 --AREQLR------------------LLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp --HHHHHH------------------HHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred --HHHHHH------------------HhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 001010 01223344322110 01234456789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q psy106 169 EEIWNHLLYL 178 (321)
Q Consensus 169 ~~i~~ll~~l 178 (321)
.++.++...+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8888877654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-14 Score=131.00 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCH
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL 107 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~ 107 (321)
.++++.++|++++++|||||||||+++.|++.+++++|+|.+.+.+..+.+ ..+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-------------a~eq------------ 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-------------AIEQ------------ 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-------------HHHH------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-------------HHHH------------
Confidence 456667899999999999999999999999999998888877544321110 1111
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCccChHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 108 QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRV---SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 108 ~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv---~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...+.+..+++. +..+|+|+.|++ ++++|+..+|+++|+|||.. +.....+++.++++
T Consensus 151 ------L~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 151 ------LKIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp ------HHHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 112233445542 235689999999 99999999999999999974 34455556555554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-17 Score=143.21 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=79.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCccEEEECCcccCeE------EEEcCCCCCCCCCCHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV-------------LNGGNIHLSITSKKQL------GFMPQQISLYPEFTIDE 94 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~-------------p~~G~I~~~g~~~~~i------g~v~Q~~~l~~~ltv~e 94 (321)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+...+ ..++|+..++ +.++.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~-~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIE-HAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEE-EEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEe-eeeecC
Confidence 5799999999999999999999999875 55554 233221000 0001111111 111111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHH----HHHHHH-HHhcCCCEEEEeCCCCCCCHHHHH
Q psy106 95 MICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQR----RVSLAI-TLLHDPELLILDEPTSGIDPVIAE 169 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQ----Rv~iA~-aL~~~P~lllLDEPtsgLD~~~~~ 169 (321)
|+ ++.+..+ +...++.......+.. -.|-++ ++ .|+ +++.+|++++|||||+++|..+.+
T Consensus 79 n~------~g~~~~~----i~~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 79 NL------YGTSKEA----VRAVQAMNRICVLDVD----LQGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EE------EEEEHHH----HHHHHHTTCEEEEECC----HHHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred cc------CCCCHHH----HHHHHHcCCcEEEECC----HHHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 21 2222222 2223332111001100 011111 12 456 788899999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEe
Q psy106 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMR 205 (321)
Q Consensus 170 ~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~ 205 (321)
.+.+.|.+..+. +..+| .. ..||++++++
T Consensus 144 ~i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 144 SLAKRLAAARTD----MESSK--EP-GLFDLVIIND 172 (198)
T ss_dssp HHHHHHHHHHHH----TTGGG--ST-TTCSEEEECS
T ss_pred HHHHHHHHHHHH----HHHhh--cc-CCceEEEECC
Confidence 999988776542 23456 11 4599987665
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-13 Score=122.35 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=86.8
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH-HcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy106 24 YVLDKL-CMTVQKSTIYSLLGASGCGKTTLLSCI-TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL 101 (321)
Q Consensus 24 ~iL~~i-sl~i~~Gei~~llGpNGaGKSTLl~~l-~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 101 (321)
+.|+.+ .--+++|++++|.||||||||||+..+ .+..++..+.++++.. .+..+..... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----------------~~~~~~~~~~-~ 71 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----------------EHPVQVRQNM-A 71 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----------------SCHHHHHHHH-H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----------------CCHHHHHHHH-H
Confidence 356666 667999999999999999999996555 4444433333333221 1222211111 1
Q ss_pred HhCCCHHHHHHHHHHH--HH----HcCC-ccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHH
Q psy106 102 IYGMSLQQIKEKAEYL--QA----LLHL-NHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGI--DPVIAEE 170 (321)
Q Consensus 102 ~~~~~~~~~~~~~~~l--l~----~~~l-~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgL--D~~~~~~ 170 (321)
..+...++.... ..+ .+ .++. ...+.....-+....+....++.++ .+|+++++|+|++.+ |+..+.+
T Consensus 72 ~~g~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 72 QFGWDVKPYEEK-GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp TTTCCCHHHHHH-TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HcCCCHHHHhhC-CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 112221110000 000 00 0000 0000111111122333333444444 589999999999988 6644555
Q ss_pred HHHHHHHH-HhCCceEEEecCChhH--------Hhh-cCEEEEEeC
Q psy106 171 IWNHLLYL-AESGRTILITTHYIDE--------AKK-SHMIGLMRK 206 (321)
Q Consensus 171 i~~ll~~l-~~~g~tIil~tH~l~~--------~~~-~drv~il~~ 206 (321)
++..+.++ ++.|.||++++|.... ++. ||.++.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 55555554 4679999999998765 344 999999874
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-14 Score=135.23 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE---CCccc-------Ce-EEEEcCCCCCCC----CCCHHHH
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL---SITSK-------KQ-LGFMPQQISLYP----EFTIDEM 95 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~---~g~~~-------~~-ig~v~Q~~~l~~----~ltv~e~ 95 (321)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.. +. +||++|.|.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999999999999987 55432 11 799999997765 6889 88
Q ss_pred HH-HHHHH---------hCC-CHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHH
Q psy106 96 IC-YYGLI---------YGM-SLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRR 140 (321)
Q Consensus 96 l~-~~~~~---------~~~-~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQR 140 (321)
+. ++..+ .+. ...+...++.++++.+++.. ..+.+.+|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 22211 111 11222356778889999865 445566777888874
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-14 Score=123.89 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=45.0
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc---------cCeEEEEcCCCCCCCCCCHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS---------KKQLGFMPQQISLYPEFTIDEMI 96 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~---------~~~ig~v~Q~~~l~~~ltv~e~l 96 (321)
|+++++|++++|+||||||||||+++|+|+.+ .+.+.+.. ...++|+||++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 67889999999999999999999999999964 35554422 23578999987766655555443
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-12 Score=120.97 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
-+++|+++.|.||||||||||+..++......+|. +.|+.-+..+.+ . .+...+...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~----------vlyi~~E~~~~~-----~----~a~~lG~~~~--- 114 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI----------AAFIDAEHALDP-----E----YAKKLGVDTD--- 114 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCCH-----H----HHHHTTCCGG---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe----------EEEEECCCCcCH-----H----HHHHcCCCHH---
Confidence 58899999999999999999988887544333332 445544432211 0 0111121110
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHD--PELLILDEPTSGI----------DP---VIAEEIWNHLL 176 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~--P~lllLDEPtsgL----------D~---~~~~~i~~ll~ 176 (321)
.+. ..+ ..+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++
T Consensus 115 ----------~l~-i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 115 ----------SLL-VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----------GCE-EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----------HeE-Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 000 011 1122 3456678888765 9999999999998 33 22223444554
Q ss_pred HH----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCEEEEecC
Q psy106 177 YL----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGILLEESP 214 (321)
Q Consensus 177 ~l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~i~~~g~ 214 (321)
++ ++.|.|||+++|... .++. ||.++.++.++.+..|+
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 44 456999999999643 1345 99888888776654443
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-12 Score=128.49 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=50.8
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
++.+++... ..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 345555432 3489999999999 9999999999999999999999999999999998754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=118.19 Aligned_cols=169 Identities=12% Similarity=0.106 Sum_probs=107.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHH-HHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY-GLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~ 102 (321)
..|+++..-+++|+++.|.||+|+|||||+..+++...+..| ..+.|+.-+ ++..+..... +..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E------~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLE------MSAQQLVMRMLCAE 255 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESS------SCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECC------CCHHHHHHHHHHHH
Confidence 468888878999999999999999999999999987655433 123443322 3333322111 111
Q ss_pred hC----------CCHHHHHHHHHHHHHHcCC-ccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG----------MSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~----------~~~~~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ +...+. +++...++.+.. ...-.....+|.++.+ +.|++++ ++|+++++|+|+...++
T Consensus 256 ~~~~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDW-GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTCCHHHHHTSCCCHHHH-HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred cCCCHHHHhcCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 11 222222 223333333322 2121224579999887 5666666 68999999999987743
Q ss_pred ----HHHHHHHHHHHHHH-hCCceEEEecC---------C--hh--------HHhh-cCEEEEEeCCEEE
Q psy106 166 ----VIAEEIWNHLLYLA-ESGRTILITTH---------Y--ID--------EAKK-SHMIGLMRKGILL 210 (321)
Q Consensus 166 ----~~~~~i~~ll~~l~-~~g~tIil~tH---------~--l~--------~~~~-~drv~il~~G~i~ 210 (321)
....++...|+.++ +.|.+||+++| + +. .+++ ||.|++|+.++..
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 33466777777776 45999999999 3 22 3455 9999999877653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-16 Score=141.75 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=89.1
Q ss_pred EEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEc
Q psy106 11 VENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMP 81 (321)
Q Consensus 11 v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~ 81 (321)
++++.+.|++ ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.+. ++++++|
T Consensus 52 l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 52 LKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4455556655 45889999999999 89999999999999999999875 78888876431 3467788
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEE
Q psy106 82 QQIS-LYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLIL 156 (321)
Q Consensus 82 Q~~~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllL 156 (321)
|... ..+.+++.|++......... ...+..+.+.. ...+|||||+||+.+++|+.++|++ +
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~------------ll~~lsgg~~~~~~i~~a~t~~p~~--l 191 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ------------LLVEMDGFEKDTAIVVMAATNRPDI--L 191 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHH------------HHHHHTTCCTTCCEEEEEEESCTTS--S
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH------------HHHHHhCCCCCCCEEEEEecCCchh--C
Confidence 7753 45566777777433211100 01111122222 2346899999999999999999987 5
Q ss_pred eCC
Q psy106 157 DEP 159 (321)
Q Consensus 157 DEP 159 (321)
|++
T Consensus 192 d~~ 194 (278)
T 1iy2_A 192 DPA 194 (278)
T ss_dssp CHH
T ss_pred CHh
Confidence 654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-13 Score=136.33 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEEECCcccCeEEEEcCCCCCCCCC--CHHHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIHLSITSKKQLGFMPQQISLYPEF--TIDEMICYYGLI 102 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~l--tv~e~l~~~~~~ 102 (321)
+.+++++.++..+.|.|++||||||++++|.. +..++.|++.+.+.+.+... ++...-+|.+ +|.++.......
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e--l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE--LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh--hhhhccCCcccceeecCHHHHHHH
Confidence 35788888999999999999999999999875 55666677776544443321 1211112222 121222111111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccc---cCC-CCccChHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHH
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHF---KRK-CGSLSGGQQRRV----------SLAITLLHDPE-LLILDEPTSGIDPVI 167 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~---~~~-~~~LSgGqkQRv----------~iA~aL~~~P~-lllLDEPtsgLD~~~ 167 (321)
......+.+++. +++...+.... +++ ...+|+||+|+. ++|+++...|. ++++||+++-+|..
T Consensus 236 L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~- 313 (512)
T 2ius_A 236 LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV- 313 (512)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-
Confidence 111124455554 45666666432 222 246899988753 35667788898 89999999988733
Q ss_pred HHHHHHHHHHHH----hCCceEEEecCChh
Q psy106 168 AEEIWNHLLYLA----ESGRTILITTHYID 193 (321)
Q Consensus 168 ~~~i~~ll~~l~----~~g~tIil~tH~l~ 193 (321)
..++.+.+.++. +-|.++|++||.+.
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 344555555543 33889999999987
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-16 Score=139.84 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=90.2
Q ss_pred EEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEE
Q psy106 10 RVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFM 80 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v 80 (321)
+++++++.|++ ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.+. ++++++
T Consensus 27 ~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 27 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 44566666665 55899999999999 89999999999999999999875 78888876432 346677
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q psy106 81 PQQIS-LYPEFTIDEMICYYGLIYGM----SLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155 (321)
Q Consensus 81 ~Q~~~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll 155 (321)
+|... ..+.+++.|++......... ...+..+.+..+ ..+|||||+||+.+++|+.++|++
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~l~g~~~~~~~i~~a~t~~p~~-- 166 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI-- 166 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH------------HHHHHTCCTTCCEEEEEEESCGGG--
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH------------HHHHhCCCCCCCEEEEEccCCchh--
Confidence 77653 45556666776432211110 111112222222 346899999999999999999987
Q ss_pred EeCCC
Q psy106 156 LDEPT 160 (321)
Q Consensus 156 LDEPt 160 (321)
+|++.
T Consensus 167 ld~~l 171 (254)
T 1ixz_A 167 LDPAL 171 (254)
T ss_dssp SCGGG
T ss_pred CCHHH
Confidence 67764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-13 Score=137.72 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=101.9
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-cEEEECCccc----CeEEEEcCCCC--
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNG-GNIHLSITSK----KQLGFMPQQIS-- 85 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~-G~I~~~g~~~----~~ig~v~Q~~~-- 85 (321)
+++..||. ..+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+.+... ..++++|+...
T Consensus 39 ~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 39 LIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred ccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34445666 568999999999999999999999999999999999999887 7777755432 46888886431
Q ss_pred --------------------CCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-ccccCCCCccChHHHHHHHHH
Q psy106 86 --------------------LYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-NHFKRKCGSLSGGQQRRVSLA 144 (321)
Q Consensus 86 --------------------l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-~~~~~~~~~LSgGqkQRv~iA 144 (321)
.+..+++.+|+..... ................++++. +......+.+|+|++|++..+
T Consensus 117 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 117 IVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECC
T ss_pred HHHHHHHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCc
Confidence 0111111111100000 000000000000001122231 111223367999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 145 ITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 145 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
+....++.+|++||... |++..+..+.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999998875
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-11 Score=107.25 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 139 RRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 139 QRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
+.+.+|++++.+|+++++| ||++|+.+..++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3478899999999999999 999999999999998865
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-12 Score=116.26 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
.|+++|++..|+. +|++++ ++++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 5788888665531 566666 8999999999999999999999999999999987643
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-13 Score=131.18 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=91.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE-CCccc---CeEEEEcCCCC-CCCCCCHHHHHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL-SITSK---KQLGFMPQQIS-LYPEFTIDEMICY 98 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~-~g~~~---~~ig~v~Q~~~-l~~~ltv~e~l~~ 98 (321)
.+++++|+++++|++++|+||||||||||+++|+|. .+|.+.. +.... ..+|++||... ++++.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~- 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGES- 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTT-
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHH-
Confidence 578999999999999999999999999999999984 4677765 22111 14677777653 333333221100
Q ss_pred HHHHhCCCHHHHHHHHHHHHH---------------HcCCc--cccCCCCccChHHHHHHHHHHHHhcCCCEEE-EeCCC
Q psy106 99 YGLIYGMSLQQIKEKAEYLQA---------------LLHLN--HFKRKCGSLSGGQQRRVSLAITLLHDPELLI-LDEPT 160 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~---------------~~~l~--~~~~~~~~LSgGqkQRv~iA~aL~~~P~lll-LDEPt 160 (321)
..............+...++ ...+. ..+.....+++|++||++.+.+++.+|++++ ||+|+
T Consensus 233 -r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~ 311 (377)
T 1svm_A 233 -RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSE 311 (377)
T ss_dssp -TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCT
T ss_pred -hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCH
Confidence 00000000000011122222 00111 1356677899999999999988999999998 99998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceE
Q psy106 161 SGIDPVIAEEIWNHLLYLAESGRTI 185 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~~~g~tI 185 (321)
. .+++++.++|.++
T Consensus 312 ~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 312 F-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp H-----------HHHTTCTTCHHHH
T ss_pred H-----------HHHHHHHHcCccH
Confidence 7 2455555556543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-09 Score=93.83 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=51.4
Q ss_pred EEEeEEEEeCCCCCcee--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE---------ECC------c
Q psy106 10 RVENAYKRHSSKLPYVL--DKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH---------LSI------T 72 (321)
Q Consensus 10 ~v~nl~k~y~~~~~~iL--~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~---------~~g------~ 72 (321)
.++.|... + ...+ +++++++.+| +++|+|||||||||++++|.+++.+..|... ..+ .
T Consensus 3 ~i~~l~i~--n--f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (182)
T 3kta_A 3 YIEKLELK--G--FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPA 77 (182)
T ss_dssp EEEEEEEE--S--BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CC
T ss_pred eEEEEEEe--C--eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCC
Confidence 45555543 1 2245 7889999999 9999999999999999999998877666421 122 1
Q ss_pred ccCeEEEEcCCCC
Q psy106 73 SKKQLGFMPQQIS 85 (321)
Q Consensus 73 ~~~~ig~v~Q~~~ 85 (321)
....|.+++|++.
T Consensus 78 ~~~~v~~~f~~~~ 90 (182)
T 3kta_A 78 KYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEEEEEECTT
T ss_pred ceEEEEEEEeCCC
Confidence 2346889998763
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=103.26 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
-+++|+++.|.||||||||||+..+++...+.+|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999998877766655
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-10 Score=111.10 Aligned_cols=134 Identities=13% Similarity=0.169 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCccEEEECCcccCeEEEEcCCCCCCCCC---CHHHHHHHHHHH-
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV-----------LNGGNIHLSITSKKQLGFMPQQISLYPEF---TIDEMICYYGLI- 102 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~-----------p~~G~I~~~g~~~~~ig~v~Q~~~l~~~l---tv~e~l~~~~~~- 102 (321)
+++|+|+||||||||++.|+|... |+.|.+.++|... .+.+.+.+...+ .+...-......
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v----~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI----MLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE----EEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE----EEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 399999999999999999999865 5678888877432 122223322221 111110000000
Q ss_pred --------hCCC--H---HHHHHHHHHHHHHcCCcc-----ccCCCCccChHHHHHHHHH----HHH-hcCCCEEEEeCC
Q psy106 103 --------YGMS--L---QQIKEKAEYLQALLHLNH-----FKRKCGSLSGGQQRRVSLA----ITL-LHDPELLILDEP 159 (321)
Q Consensus 103 --------~~~~--~---~~~~~~~~~ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA----~aL-~~~P~lllLDEP 159 (321)
...+ . .+..+.+..+++.++... ...++..+|++++||+.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0111 1 111122344555554321 1345677898999988887 665 444554 89
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy106 160 TSGIDPVIAEEIWNHLLYLA 179 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~ 179 (321)
+|++|..+..++++.|.++.
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999987764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-10 Score=105.97 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=35.9
Q ss_pred ceEEEEeE-EEEe-CCCCCceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 7 CAIRVENA-YKRH-SSKLPYVLDKLCMTVQK---STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 7 ~~I~v~nl-~k~y-~~~~~~iL~~isl~i~~---Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++++|+ +++| ++ ..+|+|+||+|.+ |++++|+||+||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~--~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc--chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 55 6799999999999 9999999999999999999998754
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-09 Score=104.12 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=77.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
..++++++.+++| +.|.||+|+|||||++++++.... .+-++.- ..+..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-------------~f~~is~-~~~~~--------------- 87 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-------------PFFHISG-SDFVE--------------- 87 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-------------CEEEEEG-GGTTT---------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-------------CeeeCCH-HHHHH---------------
Confidence 3567778888888 789999999999999999984310 0111110 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHH
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP----------TSGIDPVIAEEIWN 173 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP----------tsgLD~~~~~~i~~ 173 (321)
..++ ++++++|..+++|....|.+|++||| ++|.|+...+.+.+
T Consensus 88 ------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 88 ------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 0011 26778888999999999999999999 44777777777777
Q ss_pred HHHHHH----hCCceEEEecCChhHH
Q psy106 174 HLLYLA----ESGRTILITTHYIDEA 195 (321)
Q Consensus 174 ll~~l~----~~g~tIil~tH~l~~~ 195 (321)
++..+. ..+..||.+||.++.+
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHhccCCCCCEEEEEecCChhhh
Confidence 776663 3478899999998654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-09 Score=110.53 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=89.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCC-HHHHHHHHHHHhCCCHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFT-IDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~lt-v~e~l~~~~~~~~~~~~~~~ 111 (321)
+..|+.+.++||+||||||++.++++...+..| .| .++.++. |... +.+.........+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g---~~ilvl~------P~r~La~q~~~~l~~~~~~~----- 167 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN---TQVACTQ------PRRVAAMSVAQRVAEEMDVK----- 167 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT---CEEEEEE------SCHHHHHHHHHHHHHHTTCC-----
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC---ceEEecC------chHHHHHHHHHHHHHHhCCc-----
Confidence 456899999999999999999988765444332 01 1233321 1100 000000000000000
Q ss_pred HHHHHHHHHcCC----cc---ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCc
Q psy106 112 EKAEYLQALLHL----NH---FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGR 183 (321)
Q Consensus 112 ~~~~~ll~~~~l----~~---~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~ 183 (321)
.....+. +. .+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+........
T Consensus 168 -----v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~ 242 (773)
T 2xau_A 168 -----LGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLK 242 (773)
T ss_dssp -----BTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCE
T ss_pred -----hhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCce
Confidence 0000110 00 134566789999999999999999999999999997 9998877777766665544567
Q ss_pred eEEE-ecCChhHHhh-cC
Q psy106 184 TILI-TTHYIDEAKK-SH 199 (321)
Q Consensus 184 tIil-~tH~l~~~~~-~d 199 (321)
+|++ +||+.+.+.. ++
T Consensus 243 iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 243 IIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEESCSCCHHHHHHTT
T ss_pred EEEEeccccHHHHHHHhc
Confidence 7888 4999887754 54
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-10 Score=98.21 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEY 116 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (321)
++||+|||||||||+.++|+++ |...++.... +.+. .+. . ....+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~--------~~~-----------------~----~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVV--------AKD-----------------S----PLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTT--------CSS-----------------C----HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHc--------cCC-----------------h----HHHHH
Confidence 6899999999999999999983 4333432111 0000 000 0 11223
Q ss_pred HHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH-
Q psy106 117 LQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA- 195 (321)
Q Consensus 117 ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~- 195 (321)
+.+.++.... .|.|+.+|..+++.+..+|+.+-.+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 50 i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~ 119 (206)
T 1jjv_A 50 IVEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENK 119 (206)
T ss_dssp HHHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTT
T ss_pred HHHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcC
Confidence 3344443211 3678899999999888888654333 4466787777777666433 356899999998776
Q ss_pred -hh-cCEEEEEe
Q psy106 196 -KK-SHMIGLMR 205 (321)
Q Consensus 196 -~~-~drv~il~ 205 (321)
.. ||++++++
T Consensus 120 ~~~~~d~vi~l~ 131 (206)
T 1jjv_A 120 LTALCDRILVVD 131 (206)
T ss_dssp CGGGCSEEEEEE
T ss_pred cHhhCCEEEEEE
Confidence 44 99988875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-09 Score=95.14 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy106 141 VSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178 (321)
Q Consensus 141 v~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l 178 (321)
...|++++.+|++.++| ||++|+.+..++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999888664
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-10 Score=99.03 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+..+-.++-++|++++|+|||||||||++++|++.+ |.+.+++.+
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 444555778899999999999999999999999876 788887754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-09 Score=99.26 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc-cCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS-KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
..-.++++|+||+|||||++.++|... ..|.. .+.. ...++.++++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~--~~~t~~~~~~~~~~~~~---------------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASY--PFTTRGINVGQFEDGYF---------------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECC--TTCSSCEEEEEEEETTE----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC--CCeeeceeEEEEEecCc----------------------------
Confidence 345799999999999999999998652 11111 0100 012333332210
Q ss_pred HHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEec--
Q psy106 114 AEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILD-EPTSGIDPVIAEEIWNHLLYLAESGRTILITT-- 189 (321)
Q Consensus 114 ~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD-EPtsgLD~~~~~~i~~ll~~l~~~g~tIil~t-- 189 (321)
.+...+... .+.+..++|+|++|++. +.+...++-++++| +|.+++|...+..+++.+.+... ++.+|++.
T Consensus 215 ---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 215 ---RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp ---EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred ---eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 001111111 23466789999999887 66666788899999 99999999998888887766543 77888888
Q ss_pred CChh
Q psy106 190 HYID 193 (321)
Q Consensus 190 H~l~ 193 (321)
||+.
T Consensus 290 ~Dl~ 293 (357)
T 2e87_A 290 IDVA 293 (357)
T ss_dssp TTTC
T ss_pred cccC
Confidence 8874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.1e-10 Score=96.27 Aligned_cols=60 Identities=23% Similarity=0.220 Sum_probs=46.2
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE--EECCccc
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI--HLSITSK 74 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I--~~~g~~~ 74 (321)
+|+++.++. ..+.+..++..++|++++|+|||||||||+.++|++.+. ..|.+ .+++.+.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 577887777 568899999999999999999999999999999999887 67887 7776543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-09 Score=97.60 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=34.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCccEEE
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT---GQNVLNGGNIH 68 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I~ 68 (321)
.++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3555554 789999999999999999999999 99999999997
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-08 Score=87.88 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG 65 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G 65 (321)
+++++|++++|+|||||||||++++|+++..|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999877665
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-11 Score=114.47 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=74.8
Q ss_pred EEEeCCCCCceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCccEEEECCcccCeEEEEcCCCCC
Q psy106 15 YKRHSSKLPYVLDKLCMTVQKST------IYSLLGASGCGKTTLLSCITGQNV--LNGGNIHLSITSKKQLGFMPQQISL 86 (321)
Q Consensus 15 ~k~y~~~~~~iL~~isl~i~~Ge------i~~llGpNGaGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ig~v~Q~~~l 86 (321)
++.|++ ..+|++++..+.+++ ++||+||||||||||+++|++++. |++|. ++++.++...
T Consensus 67 ~~~~~~--~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~----------v~~i~~D~f~ 134 (321)
T 3tqc_A 67 SFYVTA--RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----------VEVITTDGFL 134 (321)
T ss_dssp HHHHHH--HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC----------EEEEEGGGGB
T ss_pred HHhhcc--hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe----------EEEEeecccc
Confidence 344555 457888888888877 999999999999999999999987 44544 4556665543
Q ss_pred CCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 87 YPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 87 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
++. ...+.... ...++.+.....+.....++.+.-....-..-.+|.+..+|+.-+...+..|+++|++.|..-.|+
T Consensus 135 ~~~-~~l~~~~~-~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 135 YSN-AKLEKQGL-MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp CCH-HHHHHTTC-GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cch-hhhhhHHH-HhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 332 11111000 001121111001111112221110000011123444555554333445679999999999886654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-10 Score=115.84 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred EeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEEEcC
Q psy106 12 ENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGFMPQ 82 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~v~Q 82 (321)
+++.+.|.+ ..+++++++++++| +.|+||||+|||||+++|++... .+.+.+++.+. ++++.+||
T Consensus 44 ~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 44 KEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 344444544 45788999999999 89999999999999999999874 67888876542 24566777
Q ss_pred CCC-CCCCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q psy106 83 QIS-LYPEFTIDEMICYYGLIYG----MSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILD 157 (321)
Q Consensus 83 ~~~-l~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLD 157 (321)
... ..+.+.+.|++.......+ ....+..+.+..++ .+||||++|+..+++|..++|++ ||
T Consensus 118 ~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL------------~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH------------HHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH------------HHhcccccCccEEEEEecCChhh--cC
Confidence 653 3444444555532211111 01122222233332 25789999999999999999998 89
Q ss_pred CCCC
Q psy106 158 EPTS 161 (321)
Q Consensus 158 EPts 161 (321)
||..
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9865
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-08 Score=97.10 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=42.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
++++||++++|++++++|||||||||++..|++.+.+.+|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3789999999999999999999999999999999999999998754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=87.82 Aligned_cols=125 Identities=17% Similarity=0.063 Sum_probs=73.9
Q ss_pred CCc--EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 35 KST--IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 35 ~Ge--i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++.... ..+..+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~~~--------------- 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAIIG--------------- 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHHHH---------------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHHHH---------------
Confidence 446 8999999999999999999988766431 1123333111 112222111
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEE
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE---SGRTILI 187 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~---~g~tIil 187 (321)
.+...++.. .+....+..+..... ...+ ..+|.++++||+... |+.....+...+.++.. .+.++|+
T Consensus 93 ---~l~~~l~~~---~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 93 ---EIARSLNIP---FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp ---HHHHHTTCC---CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred ---HHHHHhCcc---CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 111222221 111123333322211 1111 245889999999876 88888888888866654 5789999
Q ss_pred ecCChhHH
Q psy106 188 TTHYIDEA 195 (321)
Q Consensus 188 ~tH~l~~~ 195 (321)
+||+.+..
T Consensus 165 ~~~~~~~~ 172 (389)
T 1fnn_A 165 VGHNDAVL 172 (389)
T ss_dssp EESSTHHH
T ss_pred EECCchHH
Confidence 99988644
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=90.75 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=84.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHH-HHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY-GLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~ 102 (321)
..|+.+.--+.+|+++.|.|++|+|||||+..++.......+ .+.|+. .+++..+...-. ...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~----------~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR----------GVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------EEEEEE------SSSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC----------eEEEEe------CCCCHHHHHHHHHHHh
Confidence 356666667999999999999999999999888754332222 344433 135554433211 111
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ES 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~ 181 (321)
.+.+. ... .-+.||.++.+|++.|...+.+++++|.|+|...+ .++...+++++ +.
T Consensus 98 ~~v~~----------------~~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~ 154 (338)
T 4a1f_A 98 TSINM----------------HDL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQH 154 (338)
T ss_dssp HCCCH----------------HHH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHC
T ss_pred hCCCH----------------HHH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhc
Confidence 12211 111 11479999999999999999999999999997543 35666666665 44
Q ss_pred -CceEEEecC
Q psy106 182 -GRTILITTH 190 (321)
Q Consensus 182 -g~tIil~tH 190 (321)
|..+|++-|
T Consensus 155 gg~~lIVIDy 164 (338)
T 4a1f_A 155 KELGIAFIDY 164 (338)
T ss_dssp TTEEEEEEEE
T ss_pred CCCCEEEEec
Confidence 678888754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-07 Score=86.87 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=89.5
Q ss_pred EeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEEECCcc---------cCeEEE
Q psy106 12 ENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIHLSITS---------KKQLGF 79 (321)
Q Consensus 12 ~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~~~g~~---------~~~ig~ 79 (321)
+++.+.|+.. ...+|++++++++ .++++|++|||||||++.|+| ++++.+|.++..... ....+.
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~ 88 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAE 88 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEE
T ss_pred HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceee
Confidence 3444555531 1358999999999 899999999999999999999 567777765422110 123444
Q ss_pred EcCCCC-CCCCCC-HHHHHHHHHH-HhC----CCHHHHHHHH----HHHHHHcCCccccC--CCCccChHHHHHHHHHHH
Q psy106 80 MPQQIS-LYPEFT-IDEMICYYGL-IYG----MSLQQIKEKA----EYLQALLHLNHFKR--KCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 80 v~Q~~~-l~~~lt-v~e~l~~~~~-~~~----~~~~~~~~~~----~~ll~~~~l~~~~~--~~~~LSgGqkQRv~iA~a 146 (321)
.++.+. .+.+.. +.+.+..... ..+ .+.....-.+ ..-+...++....+ ...+.+..++|+..++++
T Consensus 89 ~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~ 168 (360)
T 3t34_A 89 FLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRS 168 (360)
T ss_dssp ETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHH
T ss_pred eecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHH
Confidence 443332 111110 1111100000 000 0000000000 00000111111111 123467889999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEecC
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESG-RTILITTH 190 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g-~tIil~tH 190 (321)
.+.+|+++|+.-..+..|... ...+++++++...| .||++.|.
T Consensus 169 ~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 169 YIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999888885444455443 45566777776555 57777766
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-08 Score=97.75 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
+++.+++|+|++|||||||++.|+|...+++|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 35789999999999999999999998888888776643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-07 Score=90.30 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 114 (321)
++.+++++|||||||||++..|++.+.+.+++|.+-+.+ . +. ....+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D----------~--~r-~~a~eqL~~---------------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD----------V--YR-PAAYDQLLQ---------------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------C--SC-HHHHHHHHH----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC----------c--cc-hhHHHHHHH----------------
Confidence 589999999999999999999999988877777653222 1 11 012222221
Q ss_pred HHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCceEEEecCC
Q psy106 115 EYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT-SG--IDPVIAEEIWNHLLYLAESGRTILITTHY 191 (321)
Q Consensus 115 ~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt-sg--LD~~~~~~i~~ll~~l~~~g~tIil~tH~ 191 (321)
..+..+++.... ....+.-.--+-+++.+...+++++|+|+|. .+ .|+....++.++.+........+++.+|.
T Consensus 147 --~~~~~gv~~~~~-~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 147 --LGNQIGVQVYGE-PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --HHHTTTCCEECC-TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --HHHhcCCceeec-cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 122223321110 0111122222335666666788999999886 45 78877777777665554334455555553
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-08 Score=83.51 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CccEEEE
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL-NGGNIHL 69 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p-~~G~I~~ 69 (321)
+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4555543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-08 Score=99.94 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=71.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCccc---------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITSK---------KQLGFMPQQISLYPEFTIDEMICY 98 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~~---------~~ig~v~Q~~~l~~~ltv~e~l~~ 98 (321)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|... +.+++.+|...++.. ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 467889999999999999999999999976544 56766 333211 123333332222111 00
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHcCCccccCCCC-ccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy106 99 YGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCG-SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~-~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~ 177 (321)
.+...|.+.. .++ .......-..++-++++| |+.|+++..+ .+++ .
T Consensus 75 -----------------------~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~~~---~ 121 (665)
T 2dy1_A 75 -----------------------RVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-RAWT---V 121 (665)
T ss_dssp -----------------------EEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HHHH---H
T ss_pred -----------------------EEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-HHHH---H
Confidence 0001122111 111 122233345788899999 9999998866 3333 3
Q ss_pred HHhCCceEEEecCChhH
Q psy106 178 LAESGRTILITTHYIDE 194 (321)
Q Consensus 178 l~~~g~tIil~tH~l~~ 194 (321)
+.+.+.++|++.|.++.
T Consensus 122 ~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHTTCCEEEEEECGGG
T ss_pred HHHccCCEEEEecCCch
Confidence 33468889999998775
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-07 Score=82.83 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=24.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 23 PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 23 ~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=84.53 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
+.+.++|++++|.|||||||||++++|+|+ +|+|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 445689999999999999999999999997 6888876654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=83.23 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=36.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
..++|++++|+|||||||||++++|++++++.+|.+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999998888888765443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8.6e-07 Score=87.08 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=37.6
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 149 HDPELLILDEPTSGIDP-VIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~-~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999876654 678889999988887889999999973
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-07 Score=80.25 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=27.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++|++++|+||||||||||+++|++..+|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=80.08 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=77.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ--NVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
-+++|+++.|.||+|||||||+..++.. .++..| | ...++.|+.-+..+ +......+ +...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-~~~~vlyi~~E~~~----~~~~l~~~-~~~~g~~~~- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-PGGKIIFIDTENTF----RPDRLRDI-ADRFNVDHD- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-CCCEEEEEESSSCC----CHHHHHHH-HHHTTCCHH-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-CCCeEEEEECCCCC----CHHHHHHH-HHHcCCCHH-
Confidence 4789999999999999999999998864 332211 0 11345566544432 22222111 222333321
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHH
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL----HDPELLILDEPTSGIDPV--------I----AEEIW 172 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~----~~P~lllLDEPtsgLD~~--------~----~~~i~ 172 (321)
.+++.+.+ . + ..+.. +.+.+..++.++ .+|+++++|++++-..+. . ..++.
T Consensus 186 ------~~l~~l~~--~-~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l 253 (343)
T 1v5w_A 186 ------AVLDNVLY--A-R---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQML 253 (343)
T ss_dssp ------HHHHTEEE--E-E---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHH
T ss_pred ------HHHhceeE--e-e---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHH
Confidence 12221111 1 1 12332 234555566666 679999999999866442 1 23445
Q ss_pred HHHHHHH-hCCceEEEecCChh
Q psy106 173 NHLLYLA-ESGRTILITTHYID 193 (321)
Q Consensus 173 ~ll~~l~-~~g~tIil~tH~l~ 193 (321)
..|+.++ +.|.+||+++|...
T Consensus 254 ~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 254 SRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHhCCEEEEEeecee
Confidence 5555555 45899999999654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.26 E-value=5.2e-07 Score=88.57 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=85.7
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCH
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTI 92 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv 92 (321)
++++.|+. .. ++++|+ +|++++++|||||||||++..|++.+.+.+++|.+.+.+..+.+.
T Consensus 81 ~L~~~~~~--~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa------------- 141 (425)
T 2ffh_A 81 ALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA------------- 141 (425)
T ss_dssp HHHHHTTS--SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH-------------
T ss_pred HHHHHhCC--Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh-------------
Confidence 45566765 22 678888 899999999999999999999999999988888875444321111
Q ss_pred HHHHHHHHHHhCC---------CHHHH-HHHHHHHHHHcCCc--cccCCCC-c-cChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 93 DEMICYYGLIYGM---------SLQQI-KEKAEYLQALLHLN--HFKRKCG-S-LSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 93 ~e~l~~~~~~~~~---------~~~~~-~~~~~~ll~~~~l~--~~~~~~~-~-LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
.+.+.......+. ...+. .+.++.+. .-+.+ ..|.++. . -+.-+.+...+++++..++-++++|
T Consensus 142 ~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~-~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD- 219 (425)
T 2ffh_A 142 REQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR-LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD- 219 (425)
T ss_dssp HHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH-HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-
T ss_pred HHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-
Confidence 1111111111110 11111 11222221 11222 1354432 1 2345777778888887777788888
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCceEEEecC
Q psy106 159 PTSGIDPVIAEEIWNHLLYLA-ESGRTILITTH 190 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH 190 (321)
+++|.|... .++.+. .-+.+-++.|+
T Consensus 220 a~tgq~av~------~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 220 AMTGQEALS------VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp GGGTTHHHH------HHHHHHHHTCCCEEEEES
T ss_pred ccchHHHHH------HHHHHHhcCCceEEEEeC
Confidence 566655442 223333 23566666666
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.4e-06 Score=75.98 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCceEEEecCChhHH----
Q psy106 134 SGGQQRRVSLAITLLHDPELLILDEPTSGIDP----------VIAEEIWNHLLYLAE----SGRTILITTHYIDEA---- 195 (321)
Q Consensus 134 SgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~----------~~~~~i~~ll~~l~~----~g~tIil~tH~l~~~---- 195 (321)
+++++.|..++.|...+|.+|++||+.+-++. ..+..++..+..... .+..||.+|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35677777888888889999999999776553 223344444444321 245678888876432
Q ss_pred -hhcCEEEEE
Q psy106 196 -KKSHMIGLM 204 (321)
Q Consensus 196 -~~~drv~il 204 (321)
.++++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 347765544
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.23 E-value=9.4e-09 Score=97.77 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS 70 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~ 70 (321)
+++.+++.+.|+. ..+++++++++.+|.+++|+|+||||||||++.|++.+.+.+|++.+-
T Consensus 30 ~ie~~~~~~~~~~--~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 30 LVESRHPRHQALS--TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHHCCCHHHHHHH--HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhhcCCchhhhHH--HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3555666666665 558899999999999999999999999999999999988888777653
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=78.27 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=77.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCC-ccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ-NVLN-GGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQ 109 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl-~~p~-~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 109 (321)
-+++|+++.|.||+|||||||+..++.. ..|. .| |. ..++.|+.-+..+ +......+ +...+...++
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-~~~vlyi~~e~~~----~~~~l~~~-~~~~g~~~~~ 171 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-SGKAVYIDTEGTF----RWERIENM-AKALGLDIDN 171 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-SCEEEEEESSSCC----CHHHHHHH-HHHTTCCHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-CCeEEEEECCCCC----CHHHHHHH-HHHhCCCHHH
Confidence 5899999999999999999999988753 2331 11 10 1245565544332 12221111 2223333221
Q ss_pred HHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHH
Q psy106 110 IKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL---HDPELLILDEPTSGIDP--------VI----AEEIWN 173 (321)
Q Consensus 110 ~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~---~~P~lllLDEPtsgLD~--------~~----~~~i~~ 173 (321)
+++.+ . ..+ ..+.. +.+.+..+++++ .+|+++++|+.++-.+. .. ..+++.
T Consensus 172 -------~~~~l--~-~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 172 -------VMNNI--Y-YIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp -------HHHTE--E-EEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred -------HhccE--E-EEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 11211 1 111 12332 335677777787 67999999999876532 11 234444
Q ss_pred HHHHHH-hCCceEEEecCChh
Q psy106 174 HLLYLA-ESGRTILITTHYID 193 (321)
Q Consensus 174 ll~~l~-~~g~tIil~tH~l~ 193 (321)
.|+.++ +.+.+||+++|-..
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHhCCEEEEEcceee
Confidence 555554 45899999988543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=79.93 Aligned_cols=130 Identities=13% Similarity=0.149 Sum_probs=82.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHH-H
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGL-I 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~ 102 (321)
..|+++.--+++|+++.|.|++|+|||||+..++.-... .| ..+.|+.- +++..+...-... .
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g---------~~vl~~sl------E~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND---------DVVNLHSL------EMGKKENIKRLIVTA 119 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT---------CEEEEEES------SSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC---------CeEEEEEC------CCCHHHHHHHHHHHH
Confidence 357777756999999999999999999999888742211 11 23555442 2455443321111 1
Q ss_pred hCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q psy106 103 YGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-S 181 (321)
Q Consensus 103 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~ 181 (321)
.+.+ +......-..||.++++|+..|...+.++++++.|+|... ..++.+.++++++ .
T Consensus 120 ~~i~----------------~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 120 GSIN----------------AQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKN 178 (315)
T ss_dssp TTCC----------------HHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTS
T ss_pred cCCC----------------HHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhc
Confidence 1111 1111110023999999999999999999999999999644 3445666666654 4
Q ss_pred Cce--EEEecC
Q psy106 182 GRT--ILITTH 190 (321)
Q Consensus 182 g~t--Iil~tH 190 (321)
|.. +|++-|
T Consensus 179 ~~~~~lVVID~ 189 (315)
T 3bh0_A 179 PGKRVIVMIDY 189 (315)
T ss_dssp SSCCEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 666 777765
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-07 Score=84.44 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876553
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-08 Score=93.01 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCc-ccCeEEEEcCCCCC--CCCCCHHHHHHHHHHHhCCCHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSIT-SKKQLGFMPQQISL--YPEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~-~~~~ig~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
++.+++|+|++|||||||++.|+|... +.++.. +. ..+..|+++++..- +.+....+. .....+ ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~---~tTr~~~~gi~~~~~~~i~~iDTpG~~~-~~~~~l----~~~~ 78 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---QTTRHRIVGIHTEGAYQAIYVDTPGLHM-EEKRAI----NRLM 78 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---SCCSSCEEEEEEETTEEEEEESSSSCCH-HHHHHH----HHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC---CcceeeEEEEEEECCeeEEEEECcCCCc-cchhhH----HHHH
Confidence 345899999999999999999999632 111110 11 11345666654320 111111000 000000 0000
Q ss_pred HHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc-
Q psy106 111 KEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPVI-AEEIWNHLLYLAES-GR- 183 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~~-~~~i~~ll~~l~~~-g~- 183 (321)
...+...++..++-. .+. ..+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++++. |.
T Consensus 79 ~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 79 NKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFL 149 (301)
T ss_dssp TCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcC
Confidence 000000011111111 122 23898886 5566666 78999998 8999876 67788888888753 53
Q ss_pred -eEEEecCChhHHh
Q psy106 184 -TILITTHYIDEAK 196 (321)
Q Consensus 184 -tIil~tH~l~~~~ 196 (321)
.+.+|+|+-+.++
T Consensus 150 ~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 150 DIVPISAETGLNVD 163 (301)
T ss_dssp EEEECCTTTTTTHH
T ss_pred ceEEEECCCCCCHH
Confidence 5667777655443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=5.2e-07 Score=79.75 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999998765
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.2e-07 Score=77.40 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=36.4
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
++-=++++|++++|+||+||||||+.+.|++.++ .+.+++|+..+++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------NCSVISQDDFFKP 59 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------TEEEEEGGGGBCC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------CcEEEeCCccccC
Confidence 3344678899999999999999999999999764 2566777665443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-07 Score=75.68 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
.+|++++|+|||||||||+.++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 468999999999999999999999864 66776654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-07 Score=92.37 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-EEE-ECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG-NIH-LSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G-~I~-~~g~~ 73 (321)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 5789999999999999999999999999999886 675 67654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.03 E-value=8e-05 Score=72.95 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=82.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~ 102 (321)
..|+.+.--+++|+++.|.|++|+|||||+..++.-.....| ..+.|+.- .++..+...- ....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEES------SSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEEC------CCCHHHHHHHHHHHH
Confidence 356666655899999999999999999999888754432222 12444332 2344332221 1111
Q ss_pred hC----------CCHHHHHHHHHHHHHHc-CCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----
Q psy106 103 YG----------MSLQQIKEKAEYLQALL-HLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDP---- 165 (321)
Q Consensus 103 ~~----------~~~~~~~~~~~~ll~~~-~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~---- 165 (321)
.+ +...+. .++......+ .....-.....+|..+- .+.++.+. ++|+++++|..+.-.++
T Consensus 253 ~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~ 329 (444)
T 2q6t_A 253 ARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK 329 (444)
T ss_dssp TTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred cCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence 11 222222 2222222222 11111111235666554 44556665 58999999999764432
Q ss_pred ------HHHHHHHHHHHHHH-hCCceEEEecC
Q psy106 166 ------VIAEEIWNHLLYLA-ESGRTILITTH 190 (321)
Q Consensus 166 ------~~~~~i~~ll~~l~-~~g~tIil~tH 190 (321)
....++...|+.++ +.+.+||+++|
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 12245666667776 45999999998
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-06 Score=72.66 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.|++++|+|||||||||+.++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.8e-05 Score=67.06 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
-++|+|++|+|||||++.|+|...+.++..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 479999999999999999999877666543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=73.91 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+.++..+.|.||+|+|||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-06 Score=70.57 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 99999999999999999986
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.96 E-value=8.8e-07 Score=89.36 Aligned_cols=56 Identities=27% Similarity=0.250 Sum_probs=45.3
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
++.+.|+. ..++.++++++ +|++++|+||||+|||||+++|++...+..|.+...+
T Consensus 88 ~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 88 KVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34444444 34678888888 8999999999999999999999999988888876554
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-05 Score=71.76 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=79.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++.......+ ++.|+.-+..+.+ . . +...+...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyid~E~s~~~------~--~-a~~~g~~~~---- 116 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP------I--Y-ARKLGVDID---- 116 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCCCH------H--H-HHHTTCCGG----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEeCCCCccH------H--H-HHHcCCChh----
Confidence 889999999999999999999888753322211 2445544333211 0 0 111122110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH------------HH-HHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPV------------IA-EEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~------------~~-~~i~~ll~~ 177 (321)
.+. ..+ +. + + .|-..+++.++ .+|+++++|++++-.... .+ +.+.+.+++
T Consensus 117 ---------~l~-i~~-~~--~-~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 117 ---------NLL-CSQ-PD--T-G-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp ---------GCE-EEC-CS--S-H-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred ---------hee-eeC-CC--C-H-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 000 011 11 2 2 34456666664 689999999999866321 11 234444444
Q ss_pred H----HhCCceEEEecCChhH----------------Hhh-cCEEEEEeCCEEEE
Q psy106 178 L----AESGRTILITTHYIDE----------------AKK-SHMIGLMRKGILLE 211 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~~----------------~~~-~drv~il~~G~i~~ 211 (321)
+ ++.+.+||+++|-... ++. ||-++.++..+.+.
T Consensus 182 L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp HHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeec
Confidence 4 3569999999985321 344 88777777655443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=71.98 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.4
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 149 HDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 149 ~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
.+|++|++||+-. .-++..+..+...+..+.+.|..+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5699999999855 34557888899999887777776666665
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-06 Score=75.84 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCccEEEE
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN---VLNGGNIHL 69 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~---~p~~G~I~~ 69 (321)
+.+++|+||+||||||+.++|++.+ .+++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998755 678888765
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.86 E-value=4.9e-06 Score=74.58 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=31.1
Q ss_pred eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 25 VLDKLCMTVQ---KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 25 iL~~isl~i~---~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
-|.++|+++. +|.+++|.||+||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4778888887 9999999999999999999999998877 55553
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-06 Score=71.41 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=30.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECCc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSIT 72 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g~ 72 (321)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 45 5555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=69.21 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999976543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.4e-05 Score=69.83 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=30.1
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCce-EEEecCC
Q psy106 149 HDPELLILDEPTSG-IDPVIAEEIWNHLLYLAESGRT-ILITTHY 191 (321)
Q Consensus 149 ~~P~lllLDEPtsg-LD~~~~~~i~~ll~~l~~~g~t-Iil~tH~ 191 (321)
.+|.++++||.-.- -+...+..+.+.+....+.+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 57899999996542 2233477788888887665654 7777763
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=72.65 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEE
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIG 202 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~ 202 (321)
|||+.+..+..++++.+.+..+ ...+..+.+|..++++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 9999999999999999988764 45666778898888876 66643
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.73 E-value=3.3e-07 Score=85.60 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~ 194 (321)
++.++++|| ...+++..+..+.+.+.+... ...+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 677999999 788999999888888876543 3456777776654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.73 E-value=3.6e-06 Score=81.81 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=45.9
Q ss_pred EEEEeEEEEeCCCCCceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 9 IRVENAYKRHSSKLPYVLD--------------KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~--------------~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|++..|+.. +..|+ |+++.+.+|+..+|+||+|+|||||++.|++.+
T Consensus 134 i~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 6788999999864 45888 899999999999999999999999999998765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=76.27 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCccEEEECCc
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV------------LNGGNIHLSIT 72 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~------------p~~G~I~~~g~ 72 (321)
-++|+|+||||||||++.|+|... |.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 689999999999999999999854 66788888875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.3e-05 Score=73.06 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=34.0
Q ss_pred EEEEeEEE-EeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 9 IRVENAYK-RHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 9 I~v~nl~k-~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
..+..|+. .|+. +++..+++.+| +++|+|||||||||++.+|.
T Consensus 3 M~l~~L~l~nFr~-----~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFKS-----HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEETT-----EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEcccc-----ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45677764 3543 47788888775 99999999999999999985
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.2e-05 Score=68.10 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=70.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+.+|+.+.+.||+||||||++..++.......|. ...++.+++.|......++.+++... .+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~---~~~~------ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFE---RGEE------ 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHT---TTCC------
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHH---hccc------
Confidence 4579999999999999999988765321111111 12345566655432222333333211 1100
Q ss_pred HHHHHHHHcCCcc-cc-------CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCc
Q psy106 113 KAEYLQALLHLNH-FK-------RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGR 183 (321)
Q Consensus 113 ~~~~ll~~~~l~~-~~-------~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~ 183 (321)
+-...+... .+ ..+--.+.|+-.+.. ...+.+.+++++||.-. ++|.......++.+.....+-.
T Consensus 137 ----~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 137 ----PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp ----TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred ----cCceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 000000000 00 111124556666553 34688999999999976 6777666444444433322223
Q ss_pred eEEEe-cCChhH
Q psy106 184 TILIT-THYIDE 194 (321)
Q Consensus 184 tIil~-tH~l~~ 194 (321)
++++| |.+.+.
T Consensus 211 ~il~SAT~~~~~ 222 (235)
T 3llm_A 211 IVLMSATIDTSM 222 (235)
T ss_dssp EEEEECSSCCHH
T ss_pred EEEEecCCCHHH
Confidence 44443 444443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=5.7e-05 Score=69.23 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
..+.|.||+|+||||+.++|++...+.++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999887766644
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.1e-05 Score=69.14 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=24.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 27 DKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 27 ~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.+.++++.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666666 499999999999999999985
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=66.35 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH----hCCceEEEecCChhHH
Q psy106 144 AITLLHDPELLILDEPTSG----------IDPVIAEEIWNHLLYLA----ESGRTILITTHYIDEA 195 (321)
Q Consensus 144 A~aL~~~P~lllLDEPtsg----------LD~~~~~~i~~ll~~l~----~~g~tIil~tH~l~~~ 195 (321)
..+....|.+|++||.-.- -++..+..+..++..+. ..+..+|.+|+..+.+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3344457889999997332 36667778888887763 2356788899877654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.4e-06 Score=71.09 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=35.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--EEEECC
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGG--NIHLSI 71 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G--~I~~~g 71 (321)
+.+++|.+++|.|++||||||+.+.|++.+.|+.| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45678999999999999999999999998887778 666654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.63 E-value=6.1e-06 Score=77.09 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=44.0
Q ss_pred EeEEEEeCCCCCceeee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCc
Q psy106 12 ENAYKRHSSKLPYVLDK-LCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSIT 72 (321)
Q Consensus 12 ~nl~k~y~~~~~~iL~~-isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~ 72 (321)
+++++.|++. . ++ ++|+.+ |++++++||||+||||++..|++.+.+.++++.+.+.
T Consensus 78 ~~l~~~~~~~--~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 78 DELSNLFGGD--K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp HHHHHHTTCS--C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHhccc--c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3455566652 1 56 888876 9999999999999999999999999887777766433
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.1e-06 Score=80.24 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
.+.++|+++.|++ +.++++++|+| +|+|+||+|||||++.|.|...+..+.+
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 4788888888877 56889999987 9999999999999999988765555443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.57 E-value=5e-05 Score=64.94 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++++|++.++. -++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998888 468999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=67.14 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=31.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
...+|.+++|.|++||||||+.+.|+..+.+.++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877666653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=1.4e-05 Score=69.07 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=31.1
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 16 KRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 16 k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+.|++- ..+++++|++.++++ ++++|++|||||||++.+.+
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 446553 358899999988886 67999999999999999986
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=66.29 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCccEEE------ECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHh
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG--QNVLNGGNIH------LSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY 103 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G--l~~p~~G~I~------~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 103 (321)
-+++|+++.|.||+|+|||||...++. .+++ |... ..|....++.|+.-+..+. ....... +...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~--~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~~~l~~~-~~~~ 166 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE--FLFYDEEAVSKGEVAQPKAVYIDTEGTFR----PERIMQM-AEHA 166 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG--GEECCTTTSCTTTTSSEEEEEEESSSCCC----HHHHHHH-HHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccc--cccccccccccCCCCCceEEEEECCCCCC----HHHHHHH-HHHc
Confidence 478999999999999999999988874 2321 1100 0000013466665444322 2222111 2222
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCC--------HHH----
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGG-QQRRVSLAITLL---HDPELLILDEPTSGID--------PVI---- 167 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgG-qkQRv~iA~aL~---~~P~lllLDEPtsgLD--------~~~---- 167 (321)
+...++ +++.+.+ .+ ..+.- +.+-+..++.++ .+|+++++|.-++-.. ...
T Consensus 167 g~~~~~-------~~~~l~~---~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~ 233 (322)
T 2i1q_A 167 GIDGQT-------VLDNTFV---AR---AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQK 233 (322)
T ss_dssp TCCHHH-------HHHTEEE---EE---CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHH
T ss_pred CCCHHH-------HhcCEEE---Ee---CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHH
Confidence 333221 1121111 11 11222 223344455555 4699999999875331 111
Q ss_pred HHHHHHHHHHHH-hCCceEEEecCC
Q psy106 168 AEEIWNHLLYLA-ESGRTILITTHY 191 (321)
Q Consensus 168 ~~~i~~ll~~l~-~~g~tIil~tH~ 191 (321)
..++...|+.++ +.+.+||++.|-
T Consensus 234 ~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 234 LGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCEEEEECce
Confidence 234444555554 568999998873
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.4e-06 Score=78.54 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCccE
Q psy106 13 NAYKRHSSKLPYVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQNVLNGGN 66 (321)
Q Consensus 13 nl~k~y~~~~~~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~~p~~G~ 66 (321)
+++..||. ..+++.++..+++|++ +.|.||+|+||||+++++++.+.+..+.
T Consensus 23 ~~~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 23 TLDEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred cHHHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 34444555 5588999999999999 9999999999999999999987665543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4e-05 Score=65.62 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 28 KLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 28 ~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.48 E-value=4.5e-05 Score=65.86 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.45 E-value=5.7e-05 Score=65.68 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
...+|.+++|+||+||||||+.+.|+...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999999987653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=68.24 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=61.79 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++++|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=8.5e-05 Score=72.18 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCccEEEECCc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQ-----------NVLNGGNIHLSIT 72 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl-----------~~p~~G~I~~~g~ 72 (321)
.+..|..++|+|+||+|||||++.|+|. +.|+.|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788888887653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=60.26 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.002 Score=61.71 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=77.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
-+++|+++.|.||.|+|||||...++--..... ..+.|+.-+..+.+ . .+...+...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g----------~~vlyi~~E~s~~~------~---~a~~~g~d~~--- 127 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG----------GTCAFIDAEHALDP------V---YARALGVNTD--- 127 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT----------CCEEEEESSCCCCH------H---HHHHTTCCGG---
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC----------CeEEEEECCCChhH------H---HHHHcCCCHH---
Confidence 378999999999999999999977763221111 23555554432211 0 0111111100
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-----P--------VIAEEIWNHLL 176 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-----~--------~~~~~i~~ll~ 176 (321)
.+. ..+ +. + + .+-+.+++.++ .+|+++++|..++=.- - ...+.+.+.++
T Consensus 128 ----------~l~-i~~-~~--~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 128 ----------ELL-VSQ-PD--N-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ----------GCE-EEC-CS--S-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ----------Hce-eec-CC--c-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 000 111 11 2 2 34456667776 5699999999986541 0 11234555565
Q ss_pred HH---H-hCCceEEEecCChhH----------------Hhh-cCEEEEEeCCE
Q psy106 177 YL---A-ESGRTILITTHYIDE----------------AKK-SHMIGLMRKGI 208 (321)
Q Consensus 177 ~l---~-~~g~tIil~tH~l~~----------------~~~-~drv~il~~G~ 208 (321)
+| + +.+.+||+++|-... ++. ||.++.++.+.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 55 3 468999999885321 234 88888877544
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00025 Score=61.01 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 4678999999765 7888777777766432 2467789999887654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=61.79 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
-++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 37899999999999999999975443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=61.61 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00012 Score=63.01 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+++|+||+|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.21 E-value=7.5e-05 Score=67.33 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 143 LAITLLHDPELLILDEPTSG-IDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsg-LD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
+..++..+|+++|+|||-.- .+.......++.+..+.+.|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33334568999999998642 4433334455666555577889999998
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=62.81 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 31 MTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 31 l~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588899999999999999999999875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=3.8e-05 Score=73.68 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.3
Q ss_pred ceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q psy106 24 YVLDKLCMTVQKSTI--YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 24 ~iL~~isl~i~~Gei--~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++.+++.+++|++ ++|+||+||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888899999999 9999999999999999998754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00021 Score=63.48 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=61.17 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHH-HcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCI-TGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l-~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
+++| ++-|.||.|+|||||+-.+ +...+...| .++.|+.-+..+.+ + .+..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g---------~~vlyId~E~s~~~-----~----ra~~--------- 77 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD---------AVCLFYDSEFGITP-----A----YLRS--------- 77 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT---------CEEEEEESSCCCCH-----H----HHHH---------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC---------ceEEEEeccchhhH-----H----HHHH---------
Confidence 6789 8999999999999995444 433321101 23455554444322 0 0111
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-------H--------HHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITL--L--HDPELLILDEPTSGID-------P--------VIAEEIW 172 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL--~--~~P~lllLDEPtsgLD-------~--------~~~~~i~ 172 (321)
++++..+-.+..=.-++++.+.++.++ + .+|+++++|--++=.- + ..++.+-
T Consensus 78 ---------lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s 148 (333)
T 3io5_A 78 ---------MGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK 148 (333)
T ss_dssp ---------TTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHH
T ss_pred ---------hCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHH
Confidence 222110000111123566667777776 4 3699999998766531 0 1223333
Q ss_pred HHHHH----HHhCCceEEEecCChh
Q psy106 173 NHLLY----LAESGRTILITTHYID 193 (321)
Q Consensus 173 ~ll~~----l~~~g~tIil~tH~l~ 193 (321)
+.+++ +++.|.++|++-|-..
T Consensus 149 ~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 149 SLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCEEEEECCeee
Confidence 44444 3467999999999754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00016 Score=64.77 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=25.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++++++.+++| +.|.||+|+||||+++++++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999998653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.||+||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0028 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..-+.|.||.|+|||||.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=74.14 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=79.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||+..++.......+. +.|+.-+.... + +. +...+.+.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~----------VlyiS~Ees~~------q-l~--A~~lGvd~~---- 785 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT----------CAFIDAEHALD------P-IY--ARKLGVDID---- 785 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------EEEECTTSCCC------H-HH--HHHTTCCGG----
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC----------eEEEeccchHH------H-HH--HHHcCCChh----
Confidence 8999999999999999999999998654433332 34443222211 1 10 222222211
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-P------------VIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~ll~~ 177 (321)
.+. ... .. +. .+-...++.++ .+|+++++|+..+-.. + ...+++.+.+++
T Consensus 786 ---------~L~-i~~-~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~ 850 (1706)
T 3cmw_A 786 ---------NLL-CSQ-PD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 850 (1706)
T ss_dssp ---------GCE-EEC-CS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------heE-Eec-CC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHH
Confidence 010 111 11 22 24445555544 5899999999987652 1 112345555555
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
| ++.|.+||+++|-.. .+++ ||.++.++++.
T Consensus 851 Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 851 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecc
Confidence 4 356999999999221 2445 88888886544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0035 Score=61.68 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
++.+++++||+||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999976654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=67.46 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGID---PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD---~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.|.++++||-=.-++ |.....+.+.+++.++.|..++++||+++.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 589999999977774 7778888889988888899999999998765
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00029 Score=63.49 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=32.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITS 73 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~ 73 (321)
..+++.++.|+||+||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 567889999999999999999999998654 2456666543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00049 Score=57.73 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998755
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00027 Score=63.77 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00048 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+|.++.|.||+||||||+.+.|+-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0033 Score=55.70 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
....-+.|.||.|+||||+.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999998743
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0023 Score=52.47 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+.-+.|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556889999999999999999876543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=58.85 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh----------h-HHhhcCEEEEEe
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI----------D-EAKKSHMIGLMR 205 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l----------~-~~~~~drv~il~ 205 (321)
+|+++++||--. |++. ..+.+..+++.|.+||++-|+. . .+..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 4455566666699999999932 2 234599998765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00051 Score=56.58 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCI 56 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l 56 (321)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00015 Score=67.78 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999986543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00016 Score=62.55 Aligned_cols=30 Identities=27% Similarity=0.518 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999987665433333
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00059 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.013 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.-+.|.||.|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999887654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00076 Score=58.77 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.015 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345668899999999999999999765
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998744
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=57.98 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=73.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHHhC
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLIYG 104 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~ 104 (321)
|+.+.--+++|+++.|.|++|+|||||+..++--.....| ..+.|+.- +++..+...- .....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---------~~vl~~s~------E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---------KKVGLAML------EESVEETAEDLIGLHNR 296 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---------CCEEEEES------SSCHHHHHHHHHHHHTT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---------CcEEEEec------cCCHHHHHHHHHHHHcC
Confidence 4444334899999999999999999998776532211112 12444431 3444443321 111122
Q ss_pred CCH-------------HHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-----
Q psy106 105 MSL-------------QQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID----- 164 (321)
Q Consensus 105 ~~~-------------~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD----- 164 (321)
.+. .+..+..+.++....+. ....+.+++-. +-++.++.++ .+|+++++|=-+ .+.
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~-i~~~~~~~~~~--~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~ 372 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFH-LYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGE 372 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEE-EECCC---CHH--HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSC
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEE-EECCCCCCCHH--HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCC
Confidence 211 01111111111101110 12222334433 3444555554 479999999443 321
Q ss_pred --H-HHHHHHHHHHHHHH-hCCceEEEecCCh
Q psy106 165 --P-VIAEEIWNHLLYLA-ESGRTILITTHYI 192 (321)
Q Consensus 165 --~-~~~~~i~~ll~~l~-~~g~tIil~tH~l 192 (321)
. ....++...|+.++ +.|.+||+++|--
T Consensus 373 ~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 373 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 1 22345666666766 4599999998843
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00071 Score=61.16 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+++|+||||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00094 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0023 Score=62.81 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=75.5
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHH-HHHHh
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICY-YGLIY 103 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~ 103 (321)
.|+.+.--+++|+++.|.|+.|+|||||...++.-..-. | .++.|+.- +++..+...- .....
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g---------~~vl~fSl------Ems~~ql~~R~~~~~~ 249 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D---------DVVNLHSL------EMGKKENIKRLIVTAG 249 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T---------CEEEEECS------SSCTTHHHHHHHHHHS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C---------CEEEEEEC------CCCHHHHHHHHHHHHc
Confidence 344444348999999999999999999987776422111 1 23555432 2343332211 11111
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q psy106 104 GMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESG 182 (321)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g 182 (321)
+.+... ....-..|+..+.+|+.-|...+.+.+++|.|+|. +++. ++...+++++ +.|
T Consensus 250 ~i~~~~----------------l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~ 308 (444)
T 3bgw_A 250 SINAQK----------------IKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNP 308 (444)
T ss_dssp CCCHHH----------------HHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSC
T ss_pred CCCHHH----------------HhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhC
Confidence 222110 10000137888889999888888888999999884 4443 3455555554 346
Q ss_pred ce--EEEecC
Q psy106 183 RT--ILITTH 190 (321)
Q Consensus 183 ~t--Iil~tH 190 (321)
.. +|++-+
T Consensus 309 ~~~~lIVID~ 318 (444)
T 3bgw_A 309 GKRVIVMIDY 318 (444)
T ss_dssp SSCEEEEEEC
T ss_pred CCCeEEEEec
Confidence 66 777654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=63.32 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc-----------CCCCCccEEEECC
Q psy106 36 STIYSLLGASGCGKTTLLSCITG-----------QNVLNGGNIHLSI 71 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G-----------l~~p~~G~I~~~g 71 (321)
|-.++|+|++|+|||||++.|+| .+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467778776654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00082 Score=58.50 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999986443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00095 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.|.||+||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.001 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+..+.|+||.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999743
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00089 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.++.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4677899999999999999999983
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00096 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+||+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=56.59 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999974
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0075 Score=68.05 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=78.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++....... ..+.|+.-+..+.+ . . +...+.+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G----------~~vlyis~E~s~~~---~----~--a~~lGvd~~---- 436 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----------KTCAFIDAEHALDP---I----Y--ARKLGVDID---- 436 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------CCEEEECTTSCCCH---H----H--HHHTTCCGG----
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEccCchHH---H----H--HHHcCCCHH----
Confidence 89999999999999999999877764322111 23556554443221 0 0 111222110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGIDPV-------------IAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD~~-------------~~~~i~~ll~~ 177 (321)
.+. . ..+. +..| -+.+++.++ .+|+++++|..++-.... ..+.+.+.+++
T Consensus 437 ---------~L~-i-~~~~--~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~ 501 (1706)
T 3cmw_A 437 ---------NLL-C-SQPD--TGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (1706)
T ss_dssp ---------GCE-E-ECCS--SHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------HeE-E-cCCC--CHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 000 0 0111 2332 334555554 579999999998766411 12334455555
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
+ ++.|.|||+++|--. .++. ||-++.++...
T Consensus 502 L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 502 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 4 356999999988422 2345 88877776543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.+++|.|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
++.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00094 Score=61.64 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=28.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
-.++.++.|.||+||||||+.+.|+.-.+ .|.+.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986432 34555654
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=56.75 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999853
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0086 Score=68.50 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=79.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|+++.|.||+|+|||||...++.-.....+ .+.|+.-+..+.+ + . +...+.+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~----------~vlyis~E~s~~~---~----~--a~~lGvd~~---- 436 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---I----Y--ARKLGVDID---- 436 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----------CEEEECTTSCCCH---H----H--HHHTTCCTT----
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC----------eEEEEEcCCCHHH---H----H--HHHcCCCHH----
Confidence 899999999999999999998887643322222 2445443332211 0 0 111121110
Q ss_pred HHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH
Q psy106 113 KAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLL--HDPELLILDEPTSGID-P------------VIAEEIWNHLLY 177 (321)
Q Consensus 113 ~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~ll~~ 177 (321)
.+. ..+. .+. .|-+.+++.++ .+|+++++|.-++-.. + ...+.+.+.++.
T Consensus 437 ---------~L~-I~~~---~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~ 501 (2050)
T 3cmu_A 437 ---------NLL-CSQP---DTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (2050)
T ss_dssp ---------TCE-EECC---SSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred ---------HeE-EeCC---CCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHH
Confidence 000 1111 233 34456677664 5799999999876552 1 112345555666
Q ss_pred H----HhCCceEEEecCChh----------------HHhh-cCEEEEEeCCE
Q psy106 178 L----AESGRTILITTHYID----------------EAKK-SHMIGLMRKGI 208 (321)
Q Consensus 178 l----~~~g~tIil~tH~l~----------------~~~~-~drv~il~~G~ 208 (321)
+ ++.|.+||+++|--. .++. ||.++.++...
T Consensus 502 L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 502 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp HHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 5 356999999998432 1345 88888876544
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.01 Score=48.42 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
++.++++||.- .+++..+..+.+.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 35789999964 67888888888888765333455665554
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00081 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+++|.|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999886654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0027 Score=62.21 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 136 GQQRRVSLAITLLHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 136 GqkQRv~iA~aL~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+.+....+...+.+++++|+..... ++.+. ...+.+.+ .+.++.++++.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l---~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKIL---YRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHH---TTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHH---HHcCCCEEEEEECccch
Confidence 47777778888888899888876654 45554 34455544 34678888887755543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=17.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999999999743
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=53.65 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-C----CCCCcc
Q psy106 38 IYSLLGASGCGKTTLLSCITG-Q----NVLNGG 65 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G-l----~~p~~G 65 (321)
-++|+|++|+|||||++.+++ . ..|+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 378999999999999976654 3 445655
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.+++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=54.67 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+.+.+++|.|+.||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999753
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0036 Score=58.88 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=30.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+++..+.+ .|.-+.|.|++|+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 889999999999999999999986
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=52.71 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=52.87 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.++|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+++-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999873
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+|-++.|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0018 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=52.44 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0022 Score=58.78 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=56.03 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.+++|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0024 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q psy106 36 STIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=54.95 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.003 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+-+++|.|+.||||||+.+.|+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0028 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+..+++|.|+.||||||+.+.|+-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999974
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=52.03 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
--++++|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0024 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+.++.|+||.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0017 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
=-++++|++|||||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999874
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0038 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.-.++++|+.|||||||++.+++-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0027 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0034 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0035 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=54.51 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0037 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0078 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+..-+.|.||+|+|||++.++++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3445568899999999999999998654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0031 Score=51.23 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+++
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999986
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.02 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++.-+.|.||.|+|||||.+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999865
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0037 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999975
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0033 Score=52.96 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0032 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
++++|+.|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.028 Score=64.36 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+.+.|.||.|+|||||...++-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999988864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0035 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999853
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0043 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
+++|.||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=55.57 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=57.50 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999973
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.004 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0047 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
+++|+|+.|||||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.005 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++||.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999853
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0041 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0045 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998653
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.046 Score=50.16 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGID-PVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD-~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+++++++||.- .|. +..+..+...+.+.. .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 78999999984 344 666777777776543 356788888877643
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0043 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0045 Score=56.02 Aligned_cols=23 Identities=43% Similarity=0.731 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0048 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.=-++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999999998643
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0045 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999854
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0048 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0047 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0038 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0045 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0045 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0061 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-+|.++.|-|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999976543
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0028 Score=58.56 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++-++||.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q psy106 36 STIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0048 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=59.45 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0049 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0045 Score=56.16 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0063 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..+.|.||.|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0051 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0051 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.011 Score=52.34 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
..++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655554 6889999999999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.005 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 799999999999999999864
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.005 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+|.++.|.||.||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999997654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0027 Score=62.91 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=32.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
+++.+ +.+-+|+..+|+||+|+|||||++.|+.-.....+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 55555 6788999999999999999999999986554333434
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-.++++|+.|||||||++.+++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0061 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0062 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+|-.+.|.|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999975
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.02 Score=56.83 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCCCccChHHHHHHHHHH--HHhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecC
Q psy106 128 RKCGSLSGGQQRRVSLAI--TLLH---------------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190 (321)
Q Consensus 128 ~~~~~LSgGqkQRv~iA~--aL~~---------------~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH 190 (321)
+..+++||||+|-.-+|. |+++ .-.++++||. +-+|....+..+++++++ |.=+|++|-
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP 450 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP 450 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence 457899999999654443 3332 2357999999 999999999999999876 777889987
Q ss_pred ChhHHhhcCEEEEEe
Q psy106 191 YIDEAKKSHMIGLMR 205 (321)
Q Consensus 191 ~l~~~~~~drv~il~ 205 (321)
+ .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 7 2234477776553
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0033 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-.++++|+.|||||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0061 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999854
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0054 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999983
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0064 Score=52.77 Aligned_cols=21 Identities=38% Similarity=0.320 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.++|.||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999974
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0063 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0047 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0058 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.006 Score=55.57 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0055 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0068 Score=55.19 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccE
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGN 66 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~ 66 (321)
-.++++|++|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 378999999999999999999876544443
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0072 Score=54.38 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999976543
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0061 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999853
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.006 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.006 Score=51.96 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++|+|++|+|||||++.++|
T Consensus 9 v~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999986
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0062 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0058 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+++-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998744
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0078 Score=53.20 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976543
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0071 Score=55.09 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0064 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0065 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0072 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0061 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0061 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0061 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0054 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+++-
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999863
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0068 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0069 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0068 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0068 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0079 Score=51.64 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0069 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
=-++++|+.|+|||||++.+++-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998643
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=61.71 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
..+.|.||+|+|||++.+.|+......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478899999999999999999876543
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0091 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+..+.|.|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0087 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999988543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0081 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0081 Score=51.90 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0075 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0098 Score=52.78 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+|.++.+-|+.||||||+++.|.-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999876544
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.029 Score=58.25 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+.|.||+|+|||++.++++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0085 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998643
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.01 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998655
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0076 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0085 Score=58.05 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
=.+..++.++|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999975
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0084 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..+.|.||.|+||||+++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0087 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0056 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=8.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.+|.++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999976543
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0083 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.014 Score=51.00 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHH-hCCceEEEecCChhH----------Hhh-cCEEEEEe
Q psy106 147 LLHDPELLILDEPTS----GIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDE----------AKK-SHMIGLMR 205 (321)
Q Consensus 147 L~~~P~lllLDEPts----gLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~----------~~~-~drv~il~ 205 (321)
--.+|+++++|--+. .-|+....++...++.++ +.|.++++++|--.. .+. ||-|+.++
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 345899999996432 114445566666676765 569999999985321 233 77776664
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0085 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.01 Score=56.43 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0097 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|+|||||++.++|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0089 Score=50.94 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0092 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.012 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0054 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|||||||++.+++-.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0083 Score=53.90 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++.+++|.|+.||||||+.+.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998665
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0026 Score=62.34 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred EEEeCC--cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 31 MTVQKS--TIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 31 l~i~~G--ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
|.+.++ .+++++|++|+||||++..|++.+...+..+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 444444 59999999999999999999987764333343
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.014 Score=55.10 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+++|.||+|||||||...|+--.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998544
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
-.++|+|+.|+|||||++.++.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
...+..++.|+||.||||||..+.|+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHH
Confidence 44567789999999999999999997
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.016 Score=49.82 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh-----------HHhhcCEEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID-----------EAKKSHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~-----------~~~~~drv~il~ 205 (321)
.+++++++||--. +++. +.+.++.+.+.|..|+++.++.+ ..+.||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3688999999743 5443 55566666666999999888554 234588886654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0082 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0053 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=4.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0029 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
++..++| +.|.||+|+|||||.++++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444555 779999999999999999874
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.015 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.016 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.++.|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999754
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.017 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
|.+++|=|+-||||||+++.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999986553
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988874
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.066 Score=48.18 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCC-----------hhHHhhcCEEEEEe
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHY-----------IDEAKKSHMIGLMR 205 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~-----------l~~~~~~drv~il~ 205 (321)
.+.+++++||----.| +.++++.+.+.|+.||++-++ .+.++.||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999977654 556665666689999999999 22345699887764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.02 Score=48.30 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhH
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDE 194 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~ 194 (321)
.+|.++++||. ..+++.....+.+.+.+. ..+..+|++|+..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhh
Confidence 36889999995 557777777777777553 235667888877654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
++.|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999983
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.023 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++.|.||+|||||||...|+-..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.017 Score=54.66 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999986653
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.054 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.++. ++---.|.-+.|.|++|+|||||...+.
T Consensus 6 ~lHa-s~v~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 6 TWHA-NFLVIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEES-EEEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 3444 3444568889999999999999998876
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=54.69 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++|+|+.++|||||++.|+|--
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999753
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.034 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
-.++++|.+|+|||||+|.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.09 E-value=0.019 Score=49.53 Aligned_cols=20 Identities=45% Similarity=0.767 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHH-HHc
Q psy106 39 YSLLGASGCGKTTLLSC-ITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~-l~G 58 (321)
++++|+.|+|||||++. +.|
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 78999999999999998 544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=53.55 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=22.8
Q ss_pred CccChHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy106 131 GSLSGGQQRRVSLAITL---LH--DPELLILDEPT 160 (321)
Q Consensus 131 ~~LSgGqkQRv~iA~aL---~~--~P~lllLDEPt 160 (321)
..+|+||+||.+++++| .. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999997
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.0095 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 478999999999999988864
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.0064 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|+|||||++.+++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988643
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.033 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl 59 (321)
.+++|.||+|||||||.+.|+--
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999743
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.033 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+..-+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999864
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.034 Score=49.88 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-.||+||.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 479999999999999999863
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.038 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.038 Score=51.45 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
+|..+.|.||.|+||||+.+.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999976643
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.034 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.-+.|.||.|+||||+.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457799999999999999998755
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.043 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++++|+.|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.029 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.024 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++++|+.|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.038 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 321 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-54 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-53 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-47 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-47 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-45 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-44 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-44 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-42 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-42 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-41 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-41 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-38 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-36 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-36 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-30 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-09 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 0.002 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 174 bits (443), Expect = 6e-54
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
+++EN KR + ++KL +T++ LLG SGCGKTT L I G G I
Sbjct: 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 68 HLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
+ L + Q +++P T+ E I + I +I ++ + L
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123
Query: 121 LHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA 179
L + R LSGGQ++RV++A ++ +P++L++DEP S +D + + + L
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 180 -ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ T + TH EA I +M +G LL+ P + +
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 174 bits (441), Expect = 1e-53
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
A+ V++ KR K +L + +++ I+ L+G +G GKTT L I+ + G +
Sbjct: 2 AVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 68 --------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+K + ++P++ Y E + + Y S +I+E E
Sbjct: 60 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 119
Query: 120 LLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYL 178
+ L K + + S G R++ +A L+ +P L ILDEPTSG+D + A E+ L
Sbjct: 120 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 179
Query: 179 AESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
++ G TIL+++H + E + I L+ G ++E + L E+Y +++E+VF
Sbjct: 180 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 158 bits (401), Expect = 1e-47
Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 28/239 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ V + +KR+ VL + + + + S++G+SG GK+T L CI + G I
Sbjct: 3 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 69 L---SITS-------------------KKQLGFMPQQISLYPEFTIDEMICYYGL-IYGM 105
+ +I + +L + Q +L+ T+ E + + + G+
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 106 SLQQIKEKAEYLQALLHLNHF--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163
S +E+A A + ++ + LSGGQQ+RVS+A L +P++L+ DEPTS +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 164 DPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
DP + E+ + LAE G+T+++ TH + A+ S + + +G + EE P+ +
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 156 bits (395), Expect = 6e-47
Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 9 IRVENAYKRHSS--KLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSC----------- 55
I+++N K + ++ Y L + + +++ S++G SG GK+T+L+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 56 --ITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQI 110
I + + L+ + ++GF+ QQ +L P T E + + MS ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 111 KEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIA 168
+++A + L K LSGGQQ+RV++A L ++P +++ D+PT +D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 169 EEIWNHLLYLA-ESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPK 216
E+I L L E G+T+++ TH I+ A+ I ++ G + E +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 154 bits (390), Expect = 1e-45
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 14/232 (6%)
Query: 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQI 84
VL + + ++K + ++ G++G GKT+LL I G+ + G I S ++ F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS----GRVSFCSQFS 106
Query: 85 SLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-----KRKCGSLSGGQQR 139
+ P TI E I + + + + + Q + +LSGGQ+
Sbjct: 107 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSH 199
R+SLA + D +L +LD P +D E+++ + + +T ++ T ++ +K+
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 200 MIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLLSSKQQHDRIEQRRKSFL 251
I ++ +G L + L+ E+RR S L
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRP----DFSSKLMGYDTFDQFTEERRSSIL 273
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 150 bits (380), Expect = 1e-44
Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG---------- 58
+ V++ + + + + + + V + I +L+GA+G GKTT LS I G
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 59 QNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
N + N + ++ + +P+ ++PE T+ E + ++
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 119 ALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLY 177
L K+ G+LSGG+Q+ +++ L+ P+LL++DEP+ G+ P++ E++ +
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 178 LAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFL 232
+ + G TIL+ A K +H ++ G ++ E LL+ + + +L
Sbjct: 185 INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN---EMVRKAYL 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 150 bits (380), Expect = 1e-44
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 17/230 (7%)
Query: 9 IRVENAYKRHSSKLPYV--LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
I++ N K + L+ + + V IY ++GASG GK+TL+ C+ G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 67 IHL---SITS---------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
+ + +T+ ++Q+G + Q +L T+ + + ++K +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 115 EYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
L +L+ L +LSGGQ++RV++A L +P++L+ DE TS +DP I
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 174 HLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L + G TIL+ TH +D K+ + ++ G L+E+ +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 150 bits (379), Expect = 2e-44
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+R+ + +K + ++ + V+ LLG SGCGKTT L I G +
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 62 LNGGNIHLSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114
G + + + Q +LYP T+ + I + + + Q+I ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 115 EYLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+ LL L + LSGGQ++RV+L ++ P++ ++DEP S +D + +
Sbjct: 121 REVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 174 HLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
L L G T + TH EA I +M +G+L + P + +K
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 145 bits (367), Expect = 2e-42
Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 28/250 (11%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+R EN K LD + ++V K + ++G +G GK+TL++ ITG + G ++
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 69 L----------SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSL----------- 107
+ + Q E T+ E + + G S
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 108 --QQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGID 164
+++ EKA + L L+H RK G LSGGQ + V + L+ +P+++++DEP +G+
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 165 PVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK-Y 222
P +A +I+NH+L L G T LI H +D + +M G ++ E + ++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
Query: 223 NMKSLEDVFL 232
+ + ++++
Sbjct: 243 SDPKVVEIYI 252
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 2e-42
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
++++N K + V + + + + +G SGCGK+TLL I G + G++
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 69 LSITSKKQL-------GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
+ G + Q +LYP ++ E + + + G + I ++ + +L
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
L H RK +LSGGQ++RV++ TL+ +P + +LDEP S +D + ++ + L
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
GRT++ TH EA + I ++ G + + P L
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (357), Expect = 6e-41
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 19/229 (8%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI- 67
I +++ +++ +L + ++++K + +G SG GK+TL++ I + G I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 68 -------HLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQAL 120
S + + QQ ++ T+ E I G + +++ E A+ A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-GRPT-ATDEEVVEAAKMANAH 134
Query: 121 LHLNHFK--------RKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIW 172
+ + + LSGGQ++R+S+A L++P +LILDE TS +D I
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 173 NHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L L++ RT LI H + + I ++ G ++E + L+ K
Sbjct: 195 EALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 140 bits (355), Expect = 8e-41
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 20/231 (8%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNV 61
+ N + + L + + + +L+G SG GK+T+ S IT ++
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 62 LNGGNIHLSITSK---KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ 118
L G+ T Q+ + Q + L+ + + + Y S +QI+E A
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA--YARTEEYSREQIEEAARMAY 130
Query: 119 ALLHLNHF--------KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEE 170
A+ +N LSGGQ++R+++A LL D +LILDE TS +D
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 171 IWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
I L L + RT L+ H + +++ I ++ GI++E LL +
Sbjct: 191 IQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (334), Expect = 3e-38
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + + + VL+++ MT++K + + G +G GKTTLL I+ G I
Sbjct: 3 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 69 L----SITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLN 124
K ++ F+P++I + + ++++ + +YG+ + K + + +
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVL 117
Query: 125 HFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLL-YLAESGR 183
K+K G LS G RRV LA TLL + E+ +LD+P ID ++ +L L E G
Sbjct: 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177
Query: 184 TILITTHYIDEA 195
I+ + +
Sbjct: 178 VIISSREELSYC 189
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 131 bits (331), Expect = 2e-37
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNI 67
I V+N K LD + + ++ + +LG SG GKTT + I G +V + G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 68 HLSITS------------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE 115
+ +++G + Q +LYP T E I + MS ++I+++ E
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 116 YLQALLHLNHFKRKC-GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNH 174
+ +L ++H LSG QQ+RV+LA L+ DP LL+LDEP S +D + +
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 175 LLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
+ + G T+L+ +H + + +G++ KG L++ P+ L +
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 129 bits (326), Expect = 9e-37
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 22/221 (9%)
Query: 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT------GQNVLNGGNIHLSITSK--K 75
L L V+ I L+G +G GK+TLL+ + G G + +K
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLS 134
++ QQ + + + + E + L L+ R LS
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 135 GGQQRRVSLAITLLH-------DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILI 187
GG+ +RV LA +L +LL+LDEP + +D + L L + G I++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 188 TTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSL 227
++H ++ + +H L++ G +L + +L N+
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 228
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 129 bits (326), Expect = 1e-36
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 17/228 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
I N R+ P +LD + +++++ + ++G SG GK+TL I + G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 69 L---SITSK------KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ + +Q+G + Q L +I + I + K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 120 LLHL------NHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWN 173
+ + LSGGQ++R+++A L+++P++LI DE TS +D I
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 174 HLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ + + GRT++I H + K + I +M KG ++E+ K LL +
Sbjct: 181 NMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 127 bits (321), Expect = 4e-36
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 16/223 (7%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG------QNVL 62
I +E+ ++ + + LD L + V+ + +LG +G GKT L I G +L
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 63 NGGNIHLSITSKKQ-LGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL 121
G ++ +K + F+ Q SL+P + + + + + + + ++ L
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDPKRVLDTARDL 115
Query: 122 HLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA- 179
+ H R +LSGG+Q+RV+LA L+ +P++L+LDEP S +DP E L L
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 180 ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221
++ T+L TH EA+ + I ++ G L++ P+ + EK
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 127 bits (320), Expect = 8e-36
Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 21/230 (9%)
Query: 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68
+ + + +L + Q ++I + G SG GK+T+ S + G I
Sbjct: 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 69 L---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQA 119
+ I + + Q+GF+ Q ++ + + YGL + + + + + A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT--YGLEGDYTDEDLWQVLDLAFA 118
Query: 120 LLHLNHFKRKC--------GSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEI 171
+ + + +SGGQ++R+++A L +P++L+LDE T+ +D +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 172 WNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
L L + GRT L+ H + + I + KG + L+
Sbjct: 179 QKALDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 2e-34
Identities = 51/233 (21%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 8 AIRVENAYKRHSSKL-PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGN 66
++ ++ + ++ VL L T++ + +L+G +G GK+T+ + + GG
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 67 IHL---SITS------KKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYL 117
+ L + +Q+ + Q+ ++ ++ E I Y GL ++++I A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAY-GLTQKPTMEEITAAAVKS 128
Query: 118 QALLHLNHFKRKCG--------SLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169
A ++ + LSGGQ++ V+LA L+ P +LILD+ TS +D
Sbjct: 129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 170 EIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221
++ L E R++L+ T ++ +++ I + G + E + L+EK
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 113 bits (283), Expect = 2e-30
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 38 IYSLLGASGCGKTTLLSCIT-------GQNVLNGGNIHLSITSKKQLGFMPQQISLYPEF 90
LLG +G GK+ L I G+ LNG +I ++ +GF+PQ +L+P
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 91 TIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLH 149
++ I Y + + + + + L + H RK LSGG+++RV+LA L+
Sbjct: 86 SVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143
Query: 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKG 207
P LL+LDEP S +D + L ++ IL TH + EA + + +M G
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203
Query: 208 ILLEESPPKVLLEKYN 223
++E+ K L N
Sbjct: 204 RIVEKGKLKELFSAKN 219
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 61.5 bits (148), Expect = 5e-12
Identities = 21/174 (12%), Positives = 40/174 (22%), Gaps = 16/174 (9%)
Query: 41 LLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYG 100
+ G G GKTTL+ I + + F I
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWT-------EEVRDPETKKRTGFRIITTEGKKK 57
Query: 101 LIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160
+ K Y + + +++I+DE
Sbjct: 58 IFSSKFFTSKKLVGSY--------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 161 SGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESP 214
+ + ++ T D I + +L+E +P
Sbjct: 110 KMELFSKKFRDLVRQIM-HDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 86 LYPEFTIDEM--ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKC--GSLSGGQQRRV 141
+Y E T + + G ++++ E KR LSGG++
Sbjct: 282 IYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVA 341
Query: 142 SLAITL----LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTH 190
+LA+ +LDE + +D + I ++ ++ +
Sbjct: 342 ALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/84 (14%), Positives = 32/84 (38%)
Query: 40 SLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY 99
++G GK+TLL+ + ++ +I + + + I T
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 63
Query: 100 GLIYGMSLQQIKEKAEYLQALLHL 123
L+ + +++ ++ E +L +
Sbjct: 64 DLVERLGIERTLQEIEKADIVLFV 87
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.4 bits (80), Expect = 0.004
Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 26/166 (15%)
Query: 36 STIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEM 95
+TI G S GK+TL+ +TG+ V P T +
Sbjct: 1 ATI-IFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKII 38
Query: 96 ICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLI 155
+ + + + + + + V++ + +I
Sbjct: 39 EIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 98
Query: 156 LDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMI 201
G P +L E ++ + +D+ K +
Sbjct: 99 KRWEKRGEIP----IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEV 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.92 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.77 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.45 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.31 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.18 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.71 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.58 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.75 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.63 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.6 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.57 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.48 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.45 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.44 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.4 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.36 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.35 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.29 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.22 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.2 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.15 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.12 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.11 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.1 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.01 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.98 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.97 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.96 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.94 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.83 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.79 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.78 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.77 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.73 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.71 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.71 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.71 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.69 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.68 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.68 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.68 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.68 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.66 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.65 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.61 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.58 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.56 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.5 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.48 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.36 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.36 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.35 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.34 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.3 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.29 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.29 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.28 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.28 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.26 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.24 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.24 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.18 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.18 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.16 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.16 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.13 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.13 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.1 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.06 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.05 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.04 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.02 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.99 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.98 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.95 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.93 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.93 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.91 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.88 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.85 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.84 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.81 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.81 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.78 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.76 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.75 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.69 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.69 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.66 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.64 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.63 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.62 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.61 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.55 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.54 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.5 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.48 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.34 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.33 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.3 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.29 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.24 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.18 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.17 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.16 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.12 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.12 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.11 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.09 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.07 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.05 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.98 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.87 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.87 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.85 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.82 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.82 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.8 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.76 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.74 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.64 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.57 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.5 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.44 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.38 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.31 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.28 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.27 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.19 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.15 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.15 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.11 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.1 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.08 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.0 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.96 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.94 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.93 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.93 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.83 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.79 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.75 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.7 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.69 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.67 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.55 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.51 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.07 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.01 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.96 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.89 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.89 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.85 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.78 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.75 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.49 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.31 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.02 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.75 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.72 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.71 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.51 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.5 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.37 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.09 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.04 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.99 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.18 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.11 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.06 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.73 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.62 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.27 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.79 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.73 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.47 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.34 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.29 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.28 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.11 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.93 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.3 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.8 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.74 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.39 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.59 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.48 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 84.01 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.96 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.5 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 81.21 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.1 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.43 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 80.08 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.6e-67 Score=476.64 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGF 79 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~ 79 (321)
..|+++||+|+||+ ..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. ++|||
T Consensus 5 ~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 5 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred CeEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEE
Confidence 35999999999998 7799999999999999999999999999999999999999999999999763 56999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
|||++.+|+.+||+||+.++...++.+.++.+++++++++.++++. .++++.+|||||||||+|||||+++|++|||||
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE 162 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 162 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecC
Confidence 9999999999999999999888888888888999999999999976 699999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||+||||.++.+++++|+++++ .|+|||++|||++++.. |||+++|++|+|++.|+++++++++.
T Consensus 163 Pts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999975 59999999999999977 99999999999999999999987654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.4e-66 Score=473.43 Aligned_cols=215 Identities=27% Similarity=0.458 Sum_probs=203.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------ 74 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------ 74 (321)
+.|+++||+|+||+ ..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 2 ~~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 2 AGVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CcEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 46999999999998 7799999999999999999999999999999999999999999999998642
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++||||||++++|+.+||+||+.++...++.+.++.++++.++++.++++. .++++++|||||||||+|||||+++|+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~ 159 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999999999988888999999999999976 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
+|||||||+||||.++..++++|++++++ |+|||++|||++++.. |||+++|++|+|++.|+++++++++.
T Consensus 160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999754 9999999999999987 99999999999999999999987654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-66 Score=471.95 Aligned_cols=213 Identities=26% Similarity=0.468 Sum_probs=163.3
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEEc
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFMP 81 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v~ 81 (321)
|+++||+|+|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. ++|||||
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeec
Confidence 689999999998 7799999999999999999999999999999999999999999999998753 5799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy106 82 QQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPT 160 (321)
Q Consensus 82 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPt 160 (321)
|++.+|+.+||+||+.++...++.+.++.++++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||
T Consensus 79 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 79 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp SSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred cccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999999988888877788889999999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 161 SGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 161 sgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
+||||.++.+++++|+++. +.|+|||++|||++++.. |||+++|++|+|++.|+++++++++.
T Consensus 159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 223 (232)
T d2awna2 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 223 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCC
Confidence 9999999999999999996 569999999999999987 99999999999999999999987643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.8e-66 Score=472.18 Aligned_cols=216 Identities=29% Similarity=0.441 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc------------C
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------K 75 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------~ 75 (321)
.|+++||+|+|+++...||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. +
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 5899999999965446799999999999999999999999999999999999999999999998652 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEE
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELL 154 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ll 154 (321)
+||||||++++||.+||+||+.++...++.+.++.++++.++++.++++. .++++++|||||||||+|||||+++|++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll 162 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence 79999999999999999999999988888888888999999999999976 69999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 155 ILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
||||||+||||.++.+++++|+++++ .|+|||++|||++++.. |||+++|++|+|++.|+|+++++++.
T Consensus 163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~ 233 (242)
T d1oxxk2 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233 (242)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999974 59999999999999976 99999999999999999999987643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.5e-65 Score=462.54 Aligned_cols=211 Identities=29% Similarity=0.446 Sum_probs=195.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
||+++||+|+|++ . +|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|++. ++||||
T Consensus 1 mi~v~nlsk~y~~--~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEeCC--E-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 6999999999986 3 89999999999999999999999999999999999999999999999764 479999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++++|+++||+||+.++...++.+.. +++.++++.+++.+ .++++.+|||||||||+|||||+++|++||||||
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP 154 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred ccccccCccccHHHHHHHHHhhccccHH---HHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence 9999999999999999999888776543 56777889999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhccc
Q psy106 160 TSGIDPVIAEEIWNHLLYLA-ESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNM 224 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~-~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~ 224 (321)
|+||||.++.+++++|++++ +.|+|||++|||++++.. |||+++|++|++++.|+++++++++..
T Consensus 155 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~ 221 (229)
T d3d31a2 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221 (229)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCT
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 99999999999999999996 569999999999999987 999999999999999999999876543
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-65 Score=467.72 Aligned_cols=216 Identities=26% Similarity=0.408 Sum_probs=201.6
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++||+|+|+++. ..||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 699999999997642 2589999999999999999999999999999999999999999999999763
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPE 152 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~ 152 (321)
++||||||++++++.+||.||+.++...++.+.++.++++.++++.+++.+ .++++++|||||||||+|||||+++|+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 160 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence 369999999999999999999999988888888888899999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcc
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAES-GRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYN 223 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~-g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~ 223 (321)
+|||||||+||||.++.+++++|++++++ |+|||++|||++++.. |||+++|++|+|++.|+++++++++.
T Consensus 161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~ 233 (240)
T d3dhwc1 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233 (240)
T ss_dssp EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSC
T ss_pred eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999754 9999999999999987 99999999999999999999986543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.6e-64 Score=459.17 Aligned_cols=225 Identities=28% Similarity=0.440 Sum_probs=212.3
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc--------CeEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------KQLGF 79 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------~~ig~ 79 (321)
+|+++||+|+||+ ++||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. +.+||
T Consensus 2 aI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeE
Confidence 4899999999999 7799999999999999999999999999999999999999999999999763 67999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDE 158 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDE 158 (321)
+||++.+|+++|+.||+.+...+++.+..+..+.++.+++.+++.. .++++++||||||||++|||||+++|++|||||
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE 159 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 159 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999999999998888888888888899999999976 689999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHHHHHh
Q psy106 159 PTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDVFLLL 234 (321)
Q Consensus 159 PtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~~~~~ 234 (321)
||+||||.++.+++++|++++++|+|||++|||++++.. ||||++|++|+++++|+++++.+++...+++++|...
T Consensus 160 Pt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~f~~~ 236 (238)
T d1vpla_ 160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV 236 (238)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHHHHHh
Confidence 999999999999999999999889999999999999987 9999999999999999999999888778888887653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-63 Score=457.24 Aligned_cols=215 Identities=28% Similarity=0.432 Sum_probs=199.5
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------------
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK------------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~------------- 74 (321)
+|+++||+|+||+ ..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 5899999999998 6799999999999999999999999999999999999999999999998753
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHH
Q psy106 75 ---------KQLGFMPQQISLYPEFTIDEMICYYG-LIYGMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVS 142 (321)
Q Consensus 75 ---------~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~ 142 (321)
++||||||++.+++.+||.||+.+.. ...+.+..+.++++.++++.+++.. .++++.+|||||||||+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~ 159 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 159 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence 46999999999999999999998864 4456777788888999999999965 47889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhh
Q psy106 143 LAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 143 iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|||||+.+|++|||||||+||||.++.+++++|++++++|+|||++|||++++.. ||||++|++|+|++.|+|++++.+
T Consensus 160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239 (258)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999999999889999999999999987 999999999999999999999876
Q ss_pred ccc
Q psy106 222 YNM 224 (321)
Q Consensus 222 ~~~ 224 (321)
+..
T Consensus 240 P~~ 242 (258)
T d1b0ua_ 240 PQS 242 (258)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-63 Score=456.16 Aligned_cols=223 Identities=25% Similarity=0.434 Sum_probs=196.6
Q ss_pred CCcceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------
Q psy106 4 KDKCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK--------- 74 (321)
Q Consensus 4 ~~~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~--------- 74 (321)
-++++|+++||+|+||+ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++.
T Consensus 2 ~sd~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 2 VSDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CCSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CcceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHH
Confidence 35679999999999998 7799999999999999999999999999999999999999999999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-CCcc-ccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 75 -KQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALL-HLNH-FKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 75 -~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
..++|+||++.+|+.+||+||+.+....+. .....++.++.+++.+ ++.. .++++++|||||||||+|||||+++|
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred HhcccccCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 249999999999999999999987654433 2333445555555555 4544 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHHHH
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLEDV 230 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~~~ 230 (321)
++|||||||+||||.++.+++++|++++++|+|||++|||++++.. |||+++|++|+++++|+++++.++ +.+.++
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~---~~v~~~ 235 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN---EMVRKA 235 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC---HHHHHH
T ss_pred CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC---HHHHHH
Confidence 9999999999999999999999999999889999999999999977 999999999999999999999764 445666
Q ss_pred HH
Q psy106 231 FL 232 (321)
Q Consensus 231 ~~ 232 (321)
|.
T Consensus 236 yl 237 (240)
T d1ji0a_ 236 YL 237 (240)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.6e-63 Score=449.16 Aligned_cols=208 Identities=27% Similarity=0.404 Sum_probs=188.9
Q ss_pred eEEEEeEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-----------
Q psy106 8 AIRVENAYKRHSSKL--PYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------- 74 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~--~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------- 74 (321)
||+++||+|+|+.+. ..||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 699999999997532 2489999999999999999999999999999999999999999999999753
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHcCCcc--ccCCCCccChHHHHHHHHHHHH
Q psy106 75 --KQLGFMPQQISLYPEFTIDEMICYYGLIY---GMSLQQIKEKAEYLQALLHLNH--FKRKCGSLSGGQQRRVSLAITL 147 (321)
Q Consensus 75 --~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~--~~~~~~~LSgGqkQRv~iA~aL 147 (321)
++||||||++.+++.+||+||+.++.... +.+..+..+++.++++.+++.. .+++|.+|||||||||+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 35999999999999999999999887654 3455666778888999999964 5889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecCh
Q psy106 148 LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPP 215 (321)
Q Consensus 148 ~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~ 215 (321)
+++|++|||||||+||||.++.+++++|+++++ .|+|||++|||+++++.|||+++|++|+|+++|++
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999975 59999999999998866999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-62 Score=452.21 Aligned_cols=214 Identities=28% Similarity=0.414 Sum_probs=193.4
Q ss_pred cceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----------C
Q psy106 6 KCAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----------K 75 (321)
Q Consensus 6 ~~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----------~ 75 (321)
+.+|+++||+|+||+ .+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|++. .
T Consensus 2 M~iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79 (254)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred cceEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHh
Confidence 458999999999998 6799999999999999999999999999999999999999999999999764 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHH-------------hCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHH
Q psy106 76 QLGFMPQQISLYPEFTIDEMICYYGLI-------------YGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRV 141 (321)
Q Consensus 76 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~-------------~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv 141 (321)
.|+|+||++.+++++||.||+.+.... .....++..+++.++++.+++.. .++++++|||||||||
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred cCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHH
Confidence 499999999999999999999875321 11233445567788899999875 6889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHh
Q psy106 142 SLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLE 220 (321)
Q Consensus 142 ~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~ 220 (321)
+|||||+++|++|||||||+||||..+.+++++|++++++|+|||++|||++++.. ||||++|++|+++++|+++++.+
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 99999999999999999999999999999999999999889999999999999976 99999999999999999998764
Q ss_pred h
Q psy106 221 K 221 (321)
Q Consensus 221 ~ 221 (321)
+
T Consensus 240 ~ 240 (254)
T d1g6ha_ 240 N 240 (254)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.5e-60 Score=431.94 Aligned_cols=207 Identities=28% Similarity=0.425 Sum_probs=189.0
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc-------CeEEEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK-------KQLGFM 80 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~-------~~ig~v 80 (321)
.|++ ++.|+||+ ..+ |+||+++ +|+++|+||||||||||+|+|+|+++|++|+|.++|.+. ++||||
T Consensus 2 ~l~v-~~~k~~g~--~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 2 FLKV-RAEKRLGN--FRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEE-EEEEEETT--EEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEE-EEEEEECC--EEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 4778 67999998 433 8999995 689999999999999999999999999999999999763 679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy106 81 PQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEP 159 (321)
Q Consensus 81 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEP 159 (321)
||++++||.+||+||+.|+. .+.+..+.++++.++++.+++.+ .++++.+|||||||||+|||||+++|++||||||
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEP 153 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred ccchhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence 99999999999999999864 34566677788999999999976 7999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhc
Q psy106 160 TSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKY 222 (321)
Q Consensus 160 tsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~ 222 (321)
|+||||..+..+++.|+++++ .|+|||++|||++++.. |||+++|++|++++.|+++++++..
T Consensus 154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 999999999999999999975 49999999999999987 9999999999999999999998653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-57 Score=413.09 Aligned_cols=209 Identities=27% Similarity=0.433 Sum_probs=177.4
Q ss_pred EEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEEE
Q psy106 9 IRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLGF 79 (321)
Q Consensus 9 I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig~ 79 (321)
|+++||+++|++..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|||
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 789999999976557799999999999999999999999999999999999999999999999764 57999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHH--HHHHHcC-Cc-----cccCCCCccChHHHHHHHHHHHHhcCC
Q psy106 80 MPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAE--YLQALLH-LN-----HFKRKCGSLSGGQQRRVSLAITLLHDP 151 (321)
Q Consensus 80 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~~-l~-----~~~~~~~~LSgGqkQRv~iA~aL~~~P 151 (321)
|||++.+|+ .|++||+.+... ....++..+..+ .+.+.+. +. ..+..+.+|||||||||+|||||+++|
T Consensus 82 v~Q~~~lf~-~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSCCCTT-SBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EecccccCC-ccccccccccCc--cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 999999886 599999987532 223332222211 1111111 11 134567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 152 ELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 152 ~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++||||||||+||+.+++.+++.|+++. +|+|+|++||+++.+..||||++|++|+|++.|++++++++
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~ 227 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999986 48999999999999877999999999999999999999865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-57 Score=416.36 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEEEeEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 8 AIRVENAYKRHSSK-LPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 8 ~I~v~nl~k~y~~~-~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.|+++||+++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 49999999999763 24599999999999999999999999999999999999999999999999763 579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhc
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK-----AEYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLH 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~ 149 (321)
+||||++.+|+ .|++||+.++... ........+. ....++.+ +++. .++.+.+|||||||||+|||||++
T Consensus 91 ~~v~Q~~~lf~-~tv~eni~~g~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 91 AAVGQEPQVFG-RSLQENIAYGLTQ-KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp EEECSSCCCCS-SBHHHHHHCSCSS-CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred hhccccccccC-cchhhhhhhhhcc-cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecccc
Confidence 99999999886 5999999875321 1112221111 12222322 2222 466788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
+|++||||||||+||+.++.++++.|+++.+ .|+|+|++|||++.++.||||++|++|+|++.|++++++++
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999874 58999999999999888999999999999999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.7e-58 Score=419.01 Aligned_cols=210 Identities=21% Similarity=0.331 Sum_probs=175.8
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
||+++||+|+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 1 mle~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 69999999999764 4699999999999999999999999999999999999999999999998753 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHc-CCcc-----ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQ--ALL-HLNH-----FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll--~~~-~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
||||++.+|+. |++||+.+.... ........+..+... +.. .+.. ......+|||||||||+|||||+++
T Consensus 80 ~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 80 FVSQDSAIMAG-TIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp EECCSSCCCCE-EHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEccccccCCc-chhhheeccccc-ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999876 999999764321 122222222221111 000 1111 1234567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.++..+++.|++++ +|+|+|++||+++.+..||||++|++|+|++.|++++++++
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999986 58999999999999988999999999999999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.8e-56 Score=408.10 Aligned_cols=211 Identities=27% Similarity=0.375 Sum_probs=179.6
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++||+++|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++|+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 4999999999987656799999999999999999999999999999999999999999999999764 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHc--CCcc-ccCCCCccChHHHHHHHHHHHHhcC
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA-----EYLQALL--HLNH-FKRKCGSLSGGQQRRVSLAITLLHD 150 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~ 150 (321)
|+||++.+|+. |+.+|+.+.. ....+.++..+.. .+.++.+ +++. ..+.+.+|||||||||+|||||+++
T Consensus 93 ~v~Q~~~l~~~-ti~~n~~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 93 LVSQNVHLFND-TVANNIAYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EECSSCCCCSS-BHHHHHHTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEeeccccCCc-chhhhhhhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 99999998864 9999988642 2223333332221 1122222 2222 3566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|++||||||||+||+.++..+++.|+++.+ ++|+|++||+++.++.||||++|++|+|++.|++++++++
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999864 8999999999998878999999999999999999999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.4e-55 Score=403.21 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=177.4
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeEE
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQLG 78 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~ig 78 (321)
-|+++||+++|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. ++||
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 3999999999987656799999999999999999999999999999999999999999999999764 5799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC-------cc-----ccCCCCccChHHHHHHHHHHH
Q psy106 79 FMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHL-------NH-----FKRKCGSLSGGQQRRVSLAIT 146 (321)
Q Consensus 79 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~-----~~~~~~~LSgGqkQRv~iA~a 146 (321)
||||++.+|+ .|++||+.++.. ....++. .++++..++ +. ......+||||||||++||||
T Consensus 96 ~v~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~~----~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 96 LVQQDNILFS-DTVKENILLGRP--TATDEEV----VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp EECSSCCCCS-SBHHHHHGGGCS--SCCHHHH----HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred eeeccccCCC-CCHHHHHhccCc--CCCHHHH----HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999886 599999986521 1223322 223333332 11 234456799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 147 LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 147 L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
|+++|++||||||||+||+.++..+++.|.++. +++|+|++||+++.+..||||++|++|+|++.|++++++++
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999886 47999999999999888999999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-53 Score=386.11 Aligned_cols=210 Identities=23% Similarity=0.354 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc---------CeE
Q psy106 7 CAIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK---------KQL 77 (321)
Q Consensus 7 ~~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~---------~~i 77 (321)
.+|+++|++++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|++. ...
T Consensus 2 ~il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred eEEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 478999997543 699999999999999999999999999999999976 6899999999863 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhc-------
Q psy106 78 GFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLH------- 149 (321)
Q Consensus 78 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~------- 149 (321)
+|++|+.......++.+++.+... . ....+.++++++.+++.. .++++.+|||||||||+|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p 149 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQH--D---KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 149 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCS--C---TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred eeeeccccCCccccHHHHhhhccc--h---hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCC
Confidence 999999876667789988875421 1 122356677888888865 789999999999999999999997
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhh-cCEEEEEeCCEEEEecChhHHHhhcccccHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKK-SHMIGLMRKGILLEESPPKVLLEKYNMKSLE 228 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~-~drv~il~~G~i~~~g~~~~l~~~~~~~~l~ 228 (321)
+|++|||||||+||||.++..++++|++++++|+|||++|||++++.. |||+++|++|+++++|+++++++. +.+.
T Consensus 150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~---~~l~ 226 (231)
T d1l7vc_ 150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP---PNLA 226 (231)
T ss_dssp TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH---HHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC---hHHH
Confidence 779999999999999999999999999999899999999999999976 999999999999999999999754 3455
Q ss_pred HHH
Q psy106 229 DVF 231 (321)
Q Consensus 229 ~~~ 231 (321)
++|
T Consensus 227 ~~y 229 (231)
T d1l7vc_ 227 QAY 229 (231)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.4e-51 Score=363.22 Aligned_cols=191 Identities=24% Similarity=0.377 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCC
Q psy106 8 AIRVENAYKRHSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQ 83 (321)
Q Consensus 8 ~I~v~nl~k~y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~ 83 (321)
.|+++||++.|++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .+++|+||+
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred eEEEEEEEEEeCC---eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeec
Confidence 4899999999953 599999999999999999999999999999999999999999999999764 579999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy106 84 ISLYPEFTIDEMICYYGLIYGMSLQQIKEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGI 163 (321)
Q Consensus 84 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgL 163 (321)
..+++.+|+.|++.+....++.... ++.+.+.++.+++...++++++|||||||||+|||||+++|+++||||||+||
T Consensus 79 ~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 79 IIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred ccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 9999999999999988877764422 13344566777765566789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCceEEEecCChhHHhhcCEEEEEeC
Q psy106 164 DPVIAEEIWNHLLYLAE-SGRTILITTHYIDEAKKSHMIGLMRK 206 (321)
Q Consensus 164 D~~~~~~i~~ll~~l~~-~g~tIil~tH~l~~~~~~drv~il~~ 206 (321)
|+.++.++++.|.++.+ +|++||.++|++ ..||++.+|++
T Consensus 157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 99999999999999864 567777777765 35999988754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-51 Score=384.05 Aligned_cols=194 Identities=24% Similarity=0.313 Sum_probs=159.9
Q ss_pred eCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHH
Q psy106 18 HSSKLPYVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMIC 97 (321)
Q Consensus 18 y~~~~~~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~ 97 (321)
|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|+||++.+++. |++||+.
T Consensus 46 ~~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~~~-tv~eni~ 118 (281)
T d1r0wa_ 46 LVG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----RVSFCSQFSWIMPG-TIKENII 118 (281)
T ss_dssp HTT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS----CEEEECSSCCCCSE-EHHHHHT
T ss_pred CCC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC----EEEEEeccccccCc-eeecccc
Confidence 355 6799999999999999999999999999999999999999999999987 49999999998875 9999997
Q ss_pred HHHHHhCCCHHHHHHHHHH---HHHHcCCcc-----ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy106 98 YYGLIYGMSLQQIKEKAEY---LQALLHLNH-----FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~---ll~~~~l~~-----~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~ 169 (321)
+... .......+..+. ......+.. ..+...+|||||||||+|||||+++|++|||||||++||+.++.
T Consensus 119 ~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~ 195 (281)
T d1r0wa_ 119 FGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 195 (281)
T ss_dssp TTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHH
T ss_pred cccc---ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHH
Confidence 6531 122221111111 111122211 34566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEEeCCEEEEecChhHHHhh
Q psy106 170 EIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLMRKGILLEESPPKVLLEK 221 (321)
Q Consensus 170 ~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il~~G~i~~~g~~~~l~~~ 221 (321)
++++.+.....+|+|+|++||+++.++.||||++|++|++++.|+++++.+.
T Consensus 196 ~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 196 QVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp HHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 9998654444568999999999998877999999999999999999999753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.77 E-value=3.1e-21 Score=162.98 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=101.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCccc----CeEEEEcCCCC----CCCCCCHHHHHHHHHHHhCCCHHHH
Q psy106 39 YSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSK----KQLGFMPQQIS----LYPEFTIDEMICYYGLIYGMSLQQI 110 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~ig~v~Q~~~----l~~~ltv~e~l~~~~~~~~~~~~~~ 110 (321)
++|+||||||||||+++|+|.++|+.|.+...+... ++.++...... .....+..... .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------- 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK----L--------- 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS----E---------
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhh----h---------
Confidence 789999999999999999999999999998865432 22332221110 00000000000 0
Q ss_pred HHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEec
Q psy106 111 KEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLA-ESGRTILITT 189 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~-~~g~tIil~t 189 (321)
.+-...+....++|+|+++|.++++++..+|+++++|||.... .....+++.+.++. +.+.|+|+++
T Consensus 70 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~ 137 (178)
T d1ye8a1 70 ----------VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp ----------ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred ----------hhhhhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEE
Confidence 0000011223358999999999999999999999999985443 33456666666654 4589999999
Q ss_pred CChhHHhhcCEEEEEeCCEEEEecC
Q psy106 190 HYIDEAKKSHMIGLMRKGILLEESP 214 (321)
Q Consensus 190 H~l~~~~~~drv~il~~G~i~~~g~ 214 (321)
|+.+....|+++..+.+|+++..+.
T Consensus 138 h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 138 PIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred ccHHHHHhhceEEEEeCCEEEEECC
Confidence 9876556699999899999987543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=3.2e-12 Score=115.93 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=66.3
Q ss_pred CCCccChHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEE-
Q psy106 129 KCGSLSGGQQRRVSLAIT----LLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGL- 203 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~a----L~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~i- 203 (321)
.+..+|+|||+...++.. ....|.++++|||-++|+|..++.+.+.|++..+ +.-||++||.+..++.+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEAADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGGCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHhcccEEEE
Confidence 456899999999877665 4457899999999999999999999999998764 5789999999999999998865
Q ss_pred -EeCC
Q psy106 204 -MRKG 207 (321)
Q Consensus 204 -l~~G 207 (321)
+.+|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=3.2e-11 Score=112.85 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCCccChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHHhhcCEEEEE
Q psy106 129 KCGSLSGGQQRRVSLAITL----LHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEAKKSHMIGLM 204 (321)
Q Consensus 129 ~~~~LSgGqkQRv~iA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~~~~drv~il 204 (321)
....||||||.++++|..+ ..++++++||||+++||+..+..+.++|.++...+.-+|++||++..++.||+.+.+
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 3467899999998877544 467889999999999999999999999988865566799999999999999987755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.71 E-value=1.7e-07 Score=82.35 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=38.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEecCChhHHhh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWN-HLLYLAESGRTILITTHYIDEAKK 197 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~~g~tIil~tH~l~~~~~ 197 (321)
.+..++|+||+..|=||.....+.. .+..+.+.+.+++++||+.+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence 4445999999999999988776554 556667778889999999887654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=7.6e-08 Score=85.09 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCceEEEecCChhHHh
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWN-HLLYLAE-SGRTILITTHYIDEAK 196 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~-ll~~l~~-~g~tIil~tH~l~~~~ 196 (321)
+..++|+||+..|=+|.....+.. .+..+.. .+..++++||..+...
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 345999999999999998887754 5666764 4568899999877653
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=3.1e-07 Score=75.36 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++.+|++.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 67888888876 999999999999999999963
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.75 E-value=0.00014 Score=63.67 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=77.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHH-HHH
Q psy106 24 YVLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYY-GLI 102 (321)
Q Consensus 24 ~iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~-~~~ 102 (321)
+.|+++..=+.+|+++.|.|++|+||||++..++--.-...| .++.|+. .+++..+...-. ...
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g---------~~v~~~s------~E~~~~~~~~r~~~~~ 87 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG---------KKVGLAM------LEESVEETAEDLIGLH 87 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC---------CCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcc---------cceeEee------eccchhhHHhHHHHHh
Confidence 346665544899999999999999999998777621111111 2355544 235665544322 222
Q ss_pred hCCCHHH---HH------HHHHHHHHH-cCCccc--cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH-----
Q psy106 103 YGMSLQQ---IK------EKAEYLQAL-LHLNHF--KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP----- 165 (321)
Q Consensus 103 ~~~~~~~---~~------~~~~~ll~~-~~l~~~--~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~----- 165 (321)
.+.+... .+ .....+.+. .+.... ......++..+.-...-...--.+|+++++|=. .-+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l-~~l~~~~~~~ 166 (277)
T d1cr2a_ 88 NRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHI-SIVVSASGES 166 (277)
T ss_dssp TTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEE-EC--------
T ss_pred hcCCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccc-cccccccccc
Confidence 2222110 00 011222221 222111 112223333322222222233457999999842 12221
Q ss_pred ---HHHHHHHHHHHHHH-hCCceEEEecCCh
Q psy106 166 ---VIAEEIWNHLLYLA-ESGRTILITTHYI 192 (321)
Q Consensus 166 ---~~~~~i~~ll~~l~-~~g~tIil~tH~l 192 (321)
....+++.-+++++ +.+.+|++++|--
T Consensus 167 ~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred chhHHHHHHHHHHHHHhhhccccceeecccc
Confidence 23455667778887 4599999999843
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00031 Score=61.00 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=71.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEEC-CcccCeEEEEcCCCCCCCCCCHHHHHH-HHHHHhCCCHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLS-ITSKKQLGFMPQQISLYPEFTIDEMIC-YYGLIYGMSLQQI 110 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~-g~~~~~ig~v~Q~~~l~~~ltv~e~l~-~~~~~~~~~~~~~ 110 (321)
+.+|+++.|.|+.|+|||||+-.|+--+. ..+..... .....++-|+.-+. +..+... +............
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia-~g~~~~~~~~~~~~~vl~~~~E~------~~~~~~~Rl~~~~~~~~~~~~ 98 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAED------PPTAIHHRLHALGAHLSAEER 98 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSS------CHHHHHHHHHHHHTTSCHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH-cCCCcccccccCCCceEEEeccc------hHHHHHHHHHHHhhccChhhh
Confidence 35699999999999999999977652110 00000000 01112355544322 2222111 1111122222211
Q ss_pred HHHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHH-hCCce
Q psy106 111 KEKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTS-----GIDPVIAEEIWNHLLYLA-ESGRT 184 (321)
Q Consensus 111 ~~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPts-----gLD~~~~~~i~~ll~~l~-~~g~t 184 (321)
. .......+.. ........-....+.-..+-..+|+++++|--++ --|......++..++.++ +.|.|
T Consensus 99 ~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~ 172 (274)
T d1nlfa_ 99 Q----AVADGLLIQP--LIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 172 (274)
T ss_dssp H----HHHHHEEECC--CTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred h----cccccceecc--ccCccchhHHHHHHHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCc
Confidence 1 1112221111 1111111111122222234467999999995532 125666677888888776 45899
Q ss_pred EEEecCC
Q psy106 185 ILITTHY 191 (321)
Q Consensus 185 Iil~tH~ 191 (321)
|+++.|-
T Consensus 173 vi~v~H~ 179 (274)
T d1nlfa_ 173 IVFLHHA 179 (274)
T ss_dssp EEEEEEC
T ss_pred eehhhhc
Confidence 9999884
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=1.4e-05 Score=64.23 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=1.7e-05 Score=65.80 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
|.++.|+||+||||||+++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999986554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=9.9e-06 Score=65.43 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHL 69 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~ 69 (321)
.+.|.||+|+|||||++.++..+....+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999887766555543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=3.3e-05 Score=67.38 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL 69 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~ 69 (321)
+|+..+++|+||+|||||+|.|.|-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999876666677753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.44 E-value=4.3e-05 Score=61.61 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.|+++.|.||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.42 E-value=2e-05 Score=64.26 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+++|+|++|||||||++.|...++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999888766543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=3.6e-05 Score=62.04 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++.++.|.||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=4.5e-05 Score=70.01 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=23.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++++..+.+.+|+|||||||||++.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445656699999999999999999984
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.35 E-value=4.6e-05 Score=61.23 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+|-++.|+|++||||||+-+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998443
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.29 E-value=0.00049 Score=58.48 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=77.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKE 112 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 112 (321)
+++|.++.|.||+||||||++.-++--..- .| ..+.|+.- +++..+..... ...+....+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~-~~---------~~~~~is~------e~~~~~~~~~~-~~~~~~~~~--- 82 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACA-NK---------ERAILFAY------EESRAQLLRNA-YSWGMDFEE--- 82 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-TT---------CCEEEEES------SSCHHHHHHHH-HTTSCCHHH---
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hc---------cccceeec------cCCHHHHHHHH-HHcCCChHH---
Confidence 899999999999999999999777532110 11 22444432 23444433322 222322211
Q ss_pred HHHHHHHHcCCc-cccCCCCccChHHHHHHHHHHH-HhcCCCEEEEeCCC---CCCCHHHHHHHHHHHHHHH-hCCceEE
Q psy106 113 KAEYLQALLHLN-HFKRKCGSLSGGQQRRVSLAIT-LLHDPELLILDEPT---SGIDPVIAEEIWNHLLYLA-ESGRTIL 186 (321)
Q Consensus 113 ~~~~ll~~~~l~-~~~~~~~~LSgGqkQRv~iA~a-L~~~P~lllLDEPt---sgLD~~~~~~i~~ll~~l~-~~g~tIi 186 (321)
+.. .+.. ..+......+..+. .-.+..+ --.+|++++.|--+ .+.+......+...+..++ +.+.|++
T Consensus 83 ----~~~-~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 83 ----MER-QNLLKIVCAYPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp ----HHH-TTSEEECCCCGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----Hhh-cCceEEEEeecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 111 1211 11222222232222 1122222 23479999998653 3446666555555555544 6799999
Q ss_pred EecCChh----------HHhh-cCEEEEEe
Q psy106 187 ITTHYID----------EAKK-SHMIGLMR 205 (321)
Q Consensus 187 l~tH~l~----------~~~~-~drv~il~ 205 (321)
+++|--. ..+. ||-++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EEEeeEeeccccccCCcceeeecceEEEEE
Confidence 9887321 1233 78777775
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=7.1e-05 Score=63.96 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.++.|+||+|||||||++.|.--.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999887543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.22 E-value=3.2e-05 Score=67.70 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEE
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIH 68 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~ 68 (321)
+|...+++|+||+|||||+|.|.|-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999987666677775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=7.5e-05 Score=59.99 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++|.||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.18 E-value=9.5e-05 Score=59.48 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++|-.+.|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.15 E-value=0.00012 Score=58.71 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
..++.|.||+||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998763
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.12 E-value=0.00012 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
..+++|.||.||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999975443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.11 E-value=0.00012 Score=57.71 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q psy106 37 TIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~ 57 (321)
+++.|.||+||||||+.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999775
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.10 E-value=0.00011 Score=60.04 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++||-||+|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00013 Score=57.33 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.01 E-value=0.00017 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00012 Score=59.98 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+|-++.|+|++||||||+-+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.97 E-value=0.00017 Score=57.59 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.|+||.||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999973
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.97 E-value=0.0035 Score=53.54 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEKA 114 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 114 (321)
.-.+++++||+|+||||++==|+-.++ . ..++|+++-=|.. . .-..|.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~---------~g~kV~lit~Dt~--R-~ga~eQL------------------ 59 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K---------KGFKVGLVGADVY--R-PAALEQL------------------ 59 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H---------TTCCEEEEECCCS--S-HHHHHHH------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H---------CCCceEEEEeecc--c-cchhHHH------------------
Confidence 457899999999999998766663332 1 1245777764331 1 0112222
Q ss_pred HHHHHHcCCcc-ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy106 115 EYLQALLHLNH-FKRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDP 165 (321)
Q Consensus 115 ~~ll~~~~l~~-~~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~ 165 (321)
+...+.++++. .-....++..=.++ ++..+...+-+++|.| |+|..+
T Consensus 60 ~~~a~~l~v~~~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 60 QQLGQQIGVPVYGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp HHHHHHHTCCEECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCC
T ss_pred HHhccccCcceeecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCcCc
Confidence 22334455542 12233344332222 5666678899999999 888644
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=0.00015 Score=60.14 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.++|+|+.|||||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.94 E-value=0.00019 Score=60.79 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.89 E-value=0.0035 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++-+++.++|++||||||+.+.++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0012 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.-+.+.||.|||||++.+.|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 447799999999999999999654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.00029 Score=58.50 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.|+||+|||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.78 E-value=0.00028 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++|+|+.|||||||++.|+|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00045 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+++|+++.|.||+|+||||+...++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999987764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.73 E-value=0.0011 Score=58.28 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+...-+-|.||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344457899999999999999999876
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.71 E-value=0.00032 Score=60.11 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.+++++||+|+||||++==|+-..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999976666433
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00038 Score=58.47 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQIS 85 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~ 85 (321)
++||.||.||||||+.+.|+-.+.-..- ......+..++++..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~-----~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV-----DYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS-----CGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcc-----ccCCCceEEEecccc
Confidence 6899999999999999999755422110 011234566777654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.00042 Score=56.06 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++++|+.|||||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.71 E-value=0.00023 Score=58.42 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+||+|+.++|||||+|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.00045 Score=57.27 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
..+.|+||+|+|||||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00044 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
+++|+|..|+|||||+|.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.68 E-value=0.00029 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.68 E-value=0.00042 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999986653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00037 Score=54.56 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|++|||||||++.+.+-
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.00042 Score=57.83 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|+||+||||||+++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998743
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.65 E-value=0.00047 Score=56.95 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
+..++.|+||.||||||+.+.|+-
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.61 E-value=0.0072 Score=53.31 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=67.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHH
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIK 111 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~ 111 (321)
=++.|.++-|.||+||||||++-.++....-..| .+.|+--+..+.+ +. +...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~----------~v~yiDtE~~~~~-----~~----a~~~G------- 106 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG----------TCAFIDAEHALDP-----VY----ARALG------- 106 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCCCH-----HH----HHHTT-------
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCC----------EEEEEECCccCCH-----HH----HHHhC-------
Confidence 3789999999999999999999877754332222 2445554444322 11 11122
Q ss_pred HHHHHHHHHcCCccccCCCCccChHHHHHHHHHHHHhc--CCCEEEEeCCCCCC-----C--H------HHHHHHHHHHH
Q psy106 112 EKAEYLQALLHLNHFKRKCGSLSGGQQRRVSLAITLLH--DPELLILDEPTSGI-----D--P------VIAEEIWNHLL 176 (321)
Q Consensus 112 ~~~~~ll~~~~l~~~~~~~~~LSgGqkQRv~iA~aL~~--~P~lllLDEPtsgL-----D--~------~~~~~i~~ll~ 176 (321)
++.-+-.+.+-.-+|++ +.++..|+. +++++|+|=-++-. + . ..++.+...++
T Consensus 107 -----------vd~d~i~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr 174 (268)
T d1xp8a1 107 -----------VNTDELLVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 174 (268)
T ss_dssp -----------CCGGGCEEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred -----------CCchhEEEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHH
Confidence 22100001111223444 455566654 58899999876643 1 1 12333344444
Q ss_pred HH---H-hCCceEEEecCChh
Q psy106 177 YL---A-ESGRTILITTHYID 193 (321)
Q Consensus 177 ~l---~-~~g~tIil~tH~l~ 193 (321)
.+ . +.+.+++++.|-..
T Consensus 175 ~l~~~~~~~~~~vi~tNQv~~ 195 (268)
T d1xp8a1 175 KLTAILSKTGTAAIFINQVRE 195 (268)
T ss_dssp HHHHHHTTTCCEEEEEEEC--
T ss_pred HHHhhhhhcCCeEEEEeEEee
Confidence 43 3 56788888888654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.00056 Score=55.72 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
+++|+|+.|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.00053 Score=55.96 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+||+|+.|+|||||++.|+|-
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.56 E-value=0.00049 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|+|+.|||||||++.+.+-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0028 Score=55.87 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
=++.|.++-|.||+||||||++-.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 478999999999999999999866653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.54 E-value=0.00052 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.|+|+.|||||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.00054 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
.++|+|+.|||||||++.|+|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.00043 Score=56.48 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+||+|+.|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.50 E-value=0.00046 Score=57.25 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.++.++.|+||.||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999974
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.00067 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+-.++.|+||.||||||+.+.|+--+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999998543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.48 E-value=0.00065 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.|+||.||||||+-+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.39 E-value=0.00068 Score=58.16 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSI 71 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g 71 (321)
+...+.|.||.|||||||.+.|++.... +-+.++.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 3446889999999999999999986642 2344443
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.36 E-value=0.00075 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.+.|+||+||||||+-+.|+-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999973
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.00049 Score=59.19 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYPEFTIDEMICYYGLIYGMSLQQIKEK 113 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~ 113 (321)
.+-.+++++||||+||||++==|+-... .. .++|+++-=|.. .+. ..+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~---------~~kV~lit~Dt~-----R~g----------------A~eQ 57 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DE---------GKSVVLAAADTF-----RAA----------------AIEQ 57 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HT---------TCCEEEEEECTT-----CHH----------------HHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HC---------CCceEEEeeccc-----ccc----------------hhHH
Confidence 3556899999999999998765653322 11 145777664431 110 0122
Q ss_pred HHHHHHHcCCccc-cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy106 114 AEYLQALLHLNHF-KRKCGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAE 169 (321)
Q Consensus 114 ~~~ll~~~~l~~~-~~~~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~ 169 (321)
.+...+.++++.. .....+++ .-.+-+.+.+...+-+++|.| |+|..+....
T Consensus 58 L~~~a~~l~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~ 110 (213)
T d1vmaa2 58 LKIWGERVGATVISHSEGADPA--AVAFDAVAHALARNKDVVIID--TAGRLHTKKN 110 (213)
T ss_dssp HHHHHHHHTCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHH
T ss_pred HHHHhhhcCccccccCCCCcHH--HHHHHHHHHHHHcCCCEEEEe--ccccccchHH
Confidence 2233344555421 12222222 233344556677899999999 5555444333
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00099 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++++|+.|||||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.00049 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++|+|+.+||||||+|.|+|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.30 E-value=0.0011 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++|--+.|+||.||||||..+.|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 466778899999999999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.001 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999973
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.00097 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.|+|+.||||||+-+.|+-.
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999843
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0011 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|.+++|-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.28 E-value=0.00091 Score=55.03 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~ 57 (321)
.+.|+||.||||||+.+.|+
T Consensus 5 ~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.26 E-value=0.0013 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|||||||++.+.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.24 E-value=0.001 Score=54.68 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~ 57 (321)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999886
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.00066 Score=58.30 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++++||+|+||||++-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999886666443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.0012 Score=53.48 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.|+||.||||||+.+.|+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999964
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0013 Score=55.74 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+|-+++|-|+.||||||+.+.|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999987644
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.18 E-value=0.0013 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
++.++|+.||||||+.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0013 Score=54.56 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH---cCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCIT---GQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I 67 (321)
+++|.||.||||||+-+.|+ |+...++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 88999999999999999997 5555555555
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.16 E-value=0.00095 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.13 E-value=0.0014 Score=55.64 Aligned_cols=40 Identities=28% Similarity=0.183 Sum_probs=28.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CccEEEECCcc
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQNVL--NGGNIHLSITS 73 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 73 (321)
++|-++.|.|.+||||||+.+.|.--+.. ..-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 57889999999999999999998743211 11245566654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.0016 Score=59.11 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEE
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVLNGGNIHL 69 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~ 69 (321)
.-+.|.||-|||||||+++|++.++|+.=-|.+
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 347899999999999999999999875433333
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0016 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
+++|+++-|.||.||||||+...++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999998775
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.10 E-value=0.0014 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 779999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0011 Score=55.86 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.05 E-value=0.0015 Score=54.51 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH---cCCCCCccEE
Q psy106 38 IYSLLGASGCGKTTLLSCIT---GQNVLNGGNI 67 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~---Gl~~p~~G~I 67 (321)
+++|-||.||||||..+.|+ |+...++|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 56788999999999999998 4444444443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0017 Score=55.04 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|.+++|-|+.||||||+++.|+--+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986554
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0014 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.00047 Score=54.77 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++|+|+.|+|||||++.|+|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.99 E-value=0.0015 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++|+|..|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.98 E-value=0.0018 Score=52.81 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.96 E-value=0.0017 Score=54.92 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
++.++++||- ..+-...+..++..+.+- .....+|++|+..+.+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGS
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccC-CcceEEEeccCChhhc
Confidence 6679999995 344455566666655443 2345678888877765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.001 Score=60.71 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+.-++||.||.|||||||++.|+..+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999998544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.93 E-value=0.002 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..++.++||||+||||++-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999987776543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0021 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+.|.||+|+||||+.++++...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.92 E-value=0.0017 Score=51.98 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999999998864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.91 E-value=0.0019 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+||+|+-.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.88 E-value=0.002 Score=52.41 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.|+||.||||||+.+.|+-
T Consensus 3 I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0022 Score=52.10 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
+.|+||.||||||..+.|+
T Consensus 3 I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.84 E-value=0.0028 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
+++|+++.|.||+|+|||||..-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999985443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.81 E-value=0.0022 Score=53.73 Aligned_cols=20 Identities=45% Similarity=0.622 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy106 38 IYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~ 57 (321)
++||.|+.||||||..+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.81 E-value=0.17 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q psy106 36 STIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~G 58 (321)
..+++|.|+-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0022 Score=53.96 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.|.||+|+||||++++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.76 E-value=0.0026 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
.+.++.|.||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 567899999999999999998864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.75 E-value=0.003 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
+++|+++.|.||.||||||+.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999986553
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0024 Score=51.35 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 67999999999999999875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.69 E-value=0.0034 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
+++|+++.|.||+|+||||+.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999987775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0028 Score=51.68 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.|+||.||||||+.+.|+-
T Consensus 5 Ivl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999984
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0028 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
+++|+++.|.||+||||||+.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988776
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.63 E-value=0.0024 Score=51.29 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|||||||++.+.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0027 Score=53.72 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
+.|.||.|+||||+.++++..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 679999999999999999875543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0028 Score=57.20 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEcCCCCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMPQQISLYP 88 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~Q~~~l~~ 88 (321)
++||.|++||||||+.+.|..++.-..+ ..++..+++|..+++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~--------~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE--------HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT--------CCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC--------CCceEEEeeeeeECC
Confidence 8999999999999999999876632111 124566777766554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.56 E-value=0.0028 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0028 Score=51.22 Aligned_cols=20 Identities=50% Similarity=0.702 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.54 E-value=0.0032 Score=52.18 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
-+.|+||.||||||+.+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0034 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.004 Score=49.78 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.0044 Score=57.62 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.34 E-value=0.0044 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+++|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998644
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.33 E-value=0.0036 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+-+.||.|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999998753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0045 Score=50.33 Aligned_cols=21 Identities=48% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999998864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.30 E-value=0.0021 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
++||.|++||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999876553
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.29 E-value=0.004 Score=49.67 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0048 Score=49.34 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+++
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999998775
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0052 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|++|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0042 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
++++|+.|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.18 E-value=0.0046 Score=55.34 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.-+.++||.|||||+|.|+|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 445689999999999999999754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0044 Score=49.77 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.17 E-value=0.003 Score=51.29 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|||||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.16 E-value=0.0047 Score=52.53 Aligned_cols=22 Identities=55% Similarity=0.714 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
++||+|..+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999863
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0046 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++|+|+.|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.0045 Score=52.45 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+.+++++||.-. |....+..+.+.+.+.. ....+|++|++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccch
Confidence 566999999854 78888887877775432 345689999988643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.11 E-value=0.0053 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 35 KSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
+.-++||.||.|||||||+..+...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998743
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0056 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|+.|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6799999999999999998753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0052 Score=51.60 Aligned_cols=44 Identities=9% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+++++++||.- ++....+..+...+.+.. ....+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhhh
Confidence 36799999965 455566766666665432 356678888887664
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0048 Score=49.51 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.++|+.|+|||||++.+++
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 77999999999999998875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.0064 Score=49.60 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..++|.++.|-|+=||||||+.|.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 34689999999999999999999997433
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0069 Score=48.69 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999977754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0053 Score=48.73 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.96 E-value=0.0057 Score=49.68 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++.+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0059 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+++
T Consensus 6 i~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999988875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0058 Score=48.77 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++|+|+.|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.87 E-value=0.015 Score=48.17 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=25.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.++.-.+.+ .|.-+.|.||+|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 456555566 78889999999999999987765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0064 Score=48.22 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.007 Score=53.94 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0091 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.++|+.|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.82 E-value=0.0078 Score=50.74 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
..+.|.||.|+||||+++.++..++.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 46889999999999999999976643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.80 E-value=0.0067 Score=48.40 Aligned_cols=20 Identities=30% Similarity=0.575 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0062 Score=49.09 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.++|++|+|||||++.+.+
T Consensus 5 ivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999988874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.007 Score=48.30 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.0064 Score=50.00 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.74 E-value=0.0049 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.++|++|+|||||++.+.+-.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6699999999999999987543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.0074 Score=50.50 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+++++||. -.+.+..+..++..|.+.. ....++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcc-cceeeccccCcHHHh
Confidence 469999996 4677888888888886653 345677777776654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0072 Score=48.79 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998875
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.64 E-value=0.0079 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-+.|.||.|||||++.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.57 E-value=0.0055 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45567999999999999998654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.0086 Score=47.81 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999997764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0084 Score=48.24 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.0062 Score=49.01 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0089 Score=47.90 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.39 E-value=0.0091 Score=50.40 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHH-cCCCCCcc
Q psy106 39 YSLLGASGCGKTTLLSCIT-GQNVLNGG 65 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~-Gl~~p~~G 65 (321)
+.++|++|+|||||++-+. +-..||-|
T Consensus 9 illlG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5799999999999998763 55567766
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0096 Score=47.64 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999998874
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.38 E-value=0.0084 Score=55.63 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCCh
Q psy106 140 RVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYI 192 (321)
Q Consensus 140 Rv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l 192 (321)
--++..+|=++||+++..|.. |+.+..... +.+..|..|+-+-|--
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTN 262 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCS
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccC
Confidence 345777888999999999986 555554444 4456799999999944
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.013 Score=46.79 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999998874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.01 Score=48.10 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++.+.+
T Consensus 8 ivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.01 Score=47.38 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.0089 Score=53.32 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl 59 (321)
=+.|.+|+-.+|+|+.|+|||||+..|+.-
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.15 E-value=0.012 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.+.||.|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.15 E-value=0.012 Score=47.14 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCccEE
Q psy106 39 YSLLGASGCGKTTLLSCITGQNVLNGGNI 67 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~p~~G~I 67 (321)
+.++|..|+|||||++-+..-..|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 57999999999999999876556666744
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.11 E-value=0.015 Score=54.80 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC-CCccEEEECCcccCeEEEEcCCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNV-LNGGNIHLSITSKKQLGFMPQQI 84 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~ig~v~Q~~ 84 (321)
+.++||.|||||-|.|.|++++. | -+..+.......||+-.+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecch
Confidence 67999999999999999998762 3 3555555556678877664
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.10 E-value=0.012 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.++|+.|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 56899999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.08 E-value=0.012 Score=47.64 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc--CCCCCcc
Q psy106 39 YSLLGASGCGKTTLLSCITG--QNVLNGG 65 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G--l~~p~~G 65 (321)
+.++|..|+|||||++.+.- -..||-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57999999999999998842 2457777
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.00 E-value=0.0066 Score=54.33 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.-+.|.||.|+|||||+|.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999999876
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.96 E-value=0.015 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q psy106 37 TIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~G 58 (321)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999953
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.014 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++|+|..|+|||||++.++.
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.013 Score=47.57 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 8 i~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999997765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.93 E-value=0.0084 Score=48.15 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=8.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.93 E-value=0.014 Score=50.59 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+..++| +-|.||.|+|||++.++++...
T Consensus 34 g~~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 34 GVKPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 3344455 7799999999999999999753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.014 Score=46.41 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|..|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999998763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.83 E-value=0.014 Score=46.64 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.++|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.79 E-value=0.032 Score=45.97 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=23.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.++..-+ .-.|.=+.|.||+|+|||||.-.+.
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4454334 4467788999999999999987665
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.017 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
.+++|=|+-||||||+++.|.--+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998644
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.70 E-value=0.016 Score=46.93 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
+.++|+.|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999976653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.69 E-value=0.02 Score=46.98 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+|++|.-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.015 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-+++++||-++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.016 Score=47.28 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy106 39 YSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~G 58 (321)
++++|+.|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.51 E-value=0.018 Score=51.05 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 130 CGSLSGGQQRRVSLAITLLHDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 130 ~~~LSgGqkQRv~iA~aL~~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
..+++.-+.+++.-..-+...|-++.+=.- |....+.+-++.++..+++..++-++...+..
T Consensus 195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 195 PTKWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhhcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 445677778887777777777877764321 11123333444444446677777777766543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.07 E-value=0.025 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-+||+|...||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999865
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.01 E-value=0.029 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC-CC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNV-LN 63 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~-p~ 63 (321)
++++|.-.||||||+++|+|.-- |.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 78999999999999999999753 54
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.96 E-value=0.046 Score=44.68 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 26 LDKLCMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 26 L~~isl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
++. ++-.-.|.=+.|.|++|+|||||.-.+.
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 444 3444567889999999999999886554
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.89 E-value=0.018 Score=50.65 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
=++.|.++-|.||+|+||||++-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 478999999999999999999765553
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.89 E-value=0.029 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++++|.-.||||||+++|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.85 E-value=0.04 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-----------CCCCccEEEE
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ-----------NVLNGGNIHL 69 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl-----------~~p~~G~I~~ 69 (321)
-+||+|-.-+|||||++.|++. +.|.-|.|.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v 46 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEec
Confidence 4799999999999999999843 3556677754
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.78 E-value=0.031 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
..+.++||+|+|||.|.+.|+-.+
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhhc
Confidence 367899999999999999999764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.024 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy106 38 IYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~G 58 (321)
++.|.|.=|||||||++-++.
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999998875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.031 Score=44.80 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC---CCCCcc
Q psy106 39 YSLLGASGCGKTTLLSCITGQ---NVLNGG 65 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl---~~p~~G 65 (321)
+.++|..|+|||||++.+..- ..||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 579999999999999988532 345555
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.31 E-value=0.028 Score=51.35 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999998653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.02 E-value=0.036 Score=48.53 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
++|+|+.|||||||+..|+
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7899999999999999984
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.043 Score=46.41 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=32.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 151 PELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 151 P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
.+++|+||.=. |.+.++..++..+.+. ..+..+|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcC-CCCeEEEEEcCCcccc
Confidence 45999999854 8888888777777543 2356799999988765
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.72 E-value=0.045 Score=48.25 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCITG 58 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~G 58 (321)
=+.+-+|+-.+|+|+.|+|||||+..++-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999877753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.71 E-value=0.054 Score=44.71 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+|++|.=.||||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEccCCcHHHHHHHHHhhhc
Confidence 89999999999999999998654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.049 Score=45.31 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+.+++|+||. -.|.+.++..+++.+.+.. .+..+|++|++++-+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGS
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhh
Confidence 3679999986 3455677777777775432 356678899988754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.50 E-value=0.049 Score=45.39 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
+|++|.-+||||||+..|+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7899999999999999996
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.37 E-value=0.059 Score=49.15 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=28.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCccEEEECCcccCeEEEEc
Q psy106 32 TVQKSTIYSLLGASGCGKTTLLSCITGQNVLNGGNIHLSITSKKQLGFMP 81 (321)
Q Consensus 32 ~i~~Gei~~llGpNGaGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ig~v~ 81 (321)
+++++.+ -++||.|+|||-|.|.|+-+.. .--+.++-......||+-
T Consensus 65 ~~p~~ni-LfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~~~e~gyvg 111 (364)
T d1um8a_ 65 ELSKSNI-LLIGPTGSGKTLMAQTLAKHLD--IPIAISDATSLTEAGYVG 111 (364)
T ss_dssp TCCCCCE-EEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGCC------
T ss_pred cCCCcce-eeeCCCCccHHHHHHHHHhhcc--cceeehhhhhcccchhhH
Confidence 3456654 5789999999999999997652 234555544444556653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.051 Score=49.53 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=28.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 153 LLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 153 lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
++++||--+-.... .+.+++.+.++.|..++++++++..+
T Consensus 279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHHH
Confidence 68889965433311 25566667777899999999998775
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.04 E-value=0.054 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHH---HcCCC
Q psy106 39 YSLLGASGCGKTTLLSCI---TGQNV 61 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l---~Gl~~ 61 (321)
+||+|+.|||||||.-.| +|.+.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 799999999999999988 46554
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.99 E-value=0.058 Score=45.23 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEecCChhH-Hh----h-cCEEEEEeCCEEEEecChhH
Q psy106 148 LHDPELLILDEPTS-GIDPVIAEEIWNHLLYLAESGRTILITTHYIDE-AK----K-SHMIGLMRKGILLEESPPKV 217 (321)
Q Consensus 148 ~~~P~lllLDEPts-gLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~-~~----~-~drv~il~~G~i~~~g~~~~ 217 (321)
....+++++|+--. .=++..+..+..++..+.+.|+.+|++|..... .. + ..| ++.|-++...++++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNK 168 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHH
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcH
Confidence 55899999998743 235788889999999988888888888874332 21 1 334 35666665544433
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.18 E-value=0.091 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 37 TIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 37 ei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
-++.++||+|+|||.+.+.|+-.+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHHHh
Confidence 367799999999999999998765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.08 Score=47.35 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=17.8
Q ss_pred eCCcEEEEEcCCCCcHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLL 53 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl 53 (321)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999975
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.06 E-value=0.12 Score=46.21 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLL 53 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl 53 (321)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.73 E-value=0.16 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVL 62 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p 62 (321)
.+.|=|+=|+||||+++.|+.-+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 3668899999999999999986654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.62 E-value=0.11 Score=46.68 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 25 VLDKLCMTVQKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 25 iL~~isl~i~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+..-+-...++| ++.+.||.|+|||.+.+.|++.+
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444566776 45567999999999999999753
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.27 E-value=0.12 Score=42.83 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy106 39 YSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl 59 (321)
+|++|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 689999999999999999764
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.79 E-value=0.1 Score=45.84 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
=+.+-+|+-.+|+|+.|+|||||+..++
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHHH
Confidence 4678899999999999999999987654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.14 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-..|+||.|+|||+++.-++-.
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999988743
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=0.16 Score=42.33 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQ 59 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl 59 (321)
-..|+||.|.|||+++.-++-.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHH
Confidence 3579999999999999888743
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.34 E-value=0.15 Score=45.86 Aligned_cols=26 Identities=31% Similarity=0.220 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy106 38 IYSLLGASGCGKTTLLSCITGQNVLN 63 (321)
Q Consensus 38 i~~llGpNGaGKSTLl~~l~Gl~~p~ 63 (321)
.+.|=|+=||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 37788999999999999999876543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.29 E-value=0.13 Score=46.20 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLL 53 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl 53 (321)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788999999999999996
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.28 E-value=0.1 Score=44.59 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.5
Q ss_pred EEEEEcCCCCcHHHHH
Q psy106 38 IYSLLGASGCGKTTLL 53 (321)
Q Consensus 38 i~~llGpNGaGKSTLl 53 (321)
-+.|+||-||||||++
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3578999999999865
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.11 E-value=0.16 Score=42.58 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
+|++|.-++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999998884
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.93 E-value=0.13 Score=44.59 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.4
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLL 53 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl 53 (321)
.|- +.|.|+-||||||++
T Consensus 24 ~g~-~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 24 EGP-LLIMAGAGSGKTRVL 41 (318)
T ss_dssp SSC-EEEEECTTSCHHHHH
T ss_pred CCC-EEEEecCCccHHHHH
Confidence 344 668899999999876
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.30 E-value=0.16 Score=44.05 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
++--++.|.||-++||||++++|+.++
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455688999999999999999999887
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.80 E-value=0.31 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHH
Q psy106 35 KSTIYSLLGASGCGKTTLLSC 55 (321)
Q Consensus 35 ~Gei~~llGpNGaGKSTLl~~ 55 (321)
.+.++.|.||-|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 367999999999999998743
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.74 E-value=0.17 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy106 39 YSLLGASGCGKTTLLSCITGQN 60 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~Gl~ 60 (321)
+.|=|+=||||||+++.|....
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC--
T ss_pred EEEECCcCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.39 E-value=0.12 Score=45.58 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=24.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 30 CMTVQKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 30 sl~i~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
=+++-+|+-.+|+|+.|+||||++..++
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 4688999999999999999999986554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.59 E-value=0.31 Score=38.06 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=26.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChh
Q psy106 149 HDPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYID 193 (321)
Q Consensus 149 ~~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~ 193 (321)
.++++++.||-=-==| .+.+.+..+.+.|++|+++.=|.+
T Consensus 78 ~~~dvI~IDE~QFf~d-----~i~~~~~~~~~~g~~Viv~GLd~D 117 (139)
T d2b8ta1 78 DETKVIGIDEVQFFDD-----RICEVANILAENGFVVIISGLDKN 117 (139)
T ss_dssp TTCCEEEECSGGGSCT-----HHHHHHHHHHHTTCEEEEECCSBC
T ss_pred cCcCEEEechhhhcch-----hHHHHHHHHHhcCceEEEEEeccc
Confidence 3788999999832113 233444455567999999886654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.48 E-value=0.27 Score=41.34 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999995
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.01 E-value=0.29 Score=40.27 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEecCChhHH
Q psy106 150 DPELLILDEPTSGIDPVIAEEIWNHLLYLAESGRTILITTHYIDEA 195 (321)
Q Consensus 150 ~P~lllLDEPtsgLD~~~~~~i~~ll~~l~~~g~tIil~tH~l~~~ 195 (321)
+.+++|+||. -.|...++..+++.|.+-. .+..+|++|++.+-+
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCC-CCceeeeccCChhhC
Confidence 3589999994 5677888888888886542 367789999998764
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.96 E-value=0.085 Score=39.38 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=17.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHH
Q psy106 33 VQKSTIYSLLGASGCGKTTLL 53 (321)
Q Consensus 33 i~~Gei~~llGpNGaGKSTLl 53 (321)
+++|+.+.|.+|-|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 357999999999999999544
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.50 E-value=0.47 Score=40.71 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q psy106 36 STIYSLLGASGCGKTTLLSCITGQNV 61 (321)
Q Consensus 36 Gei~~llGpNGaGKSTLl~~l~Gl~~ 61 (321)
+-.++++|-..+|||||+|.|.|--.
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 34589999999999999999998643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.21 E-value=0.33 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHH---cCCC
Q psy106 39 YSLLGASGCGKTTLLSCIT---GQNV 61 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~---Gl~~ 61 (321)
+||+|.-|+|||||+..|. |.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 8999999999999999994 6553
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.10 E-value=0.41 Score=40.59 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
++++|.-+||||||+..|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999998884
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.43 E-value=0.47 Score=46.47 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH
Q psy106 34 QKSTIYSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 34 ~~Gei~~llGpNGaGKSTLl~~l~ 57 (321)
.+.+.+.|.|.+|||||+-.|.|+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il 107 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIM 107 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999988885
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.08 E-value=0.37 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy106 39 YSLLGASGCGKTTLLSCIT 57 (321)
Q Consensus 39 ~~llGpNGaGKSTLl~~l~ 57 (321)
++++|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999999883
|