Psyllid ID: psy10742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYIPE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcEEEEcccccEEEHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccEEEEEEEccccccccccccccHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcEEEEcccccEEEHHHHHHHHHcHcccccHccHHHHHHHHHcccccEEEEEEEEEccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccEEccccccHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLTKEIWKELRLIDEIVHntsivfgeddqvyryddicakwvdscfpndilnLDYVIEEVETKalnltfpirftfsprratidprrrlCVNTaqeqfltplsfpcpqismagcglkcvDNTLKRLFFKLGVFiarhpgyfIIVPILLTIICITGFQRIffemdpeylfspqhgpgkteRAIVEQYFKMNysarfnptritrpgryipe
Flexible Loop (DISEMBL)
MLTKEIWKELRLIDEIvhntsivfgeddqVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKalnltfpirftfsprratidprRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKmnysarfnptritrpgryipe
Low Complexity Region (SEG)
MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFiivpilltiicitGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYIPE
Disordered region (IsUnstruct)
****EIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHG*GKTERAIVEQYFKMNYSARFN*************
Disordered Region (DISOPRED)
*LTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRA********************************CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITR*******
Disordered Region (DISEMBL)
MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYIPE
Disordered Region (DISPRO)
MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYIPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q14B62	888	Patched domain-containing	yes	N/A	0.405	0.094	0.380	1e-09
Q96NR3	888	Patched domain-containing	yes	N/A	0.405	0.094	0.380	1e-09
Q5RIV7	897	Patched domain-containing	no	N/A	0.434	0.100	0.362	3e-08
Q3KNS1	767	Patched domain-containing	no	N/A	0.454	0.122	0.322	1e-07
B9EKX1	904	Patched domain-containing	no	N/A	0.405	0.092	0.329	2e-06
Q6ZW05	846	Patched domain-containing	no	N/A	0.405	0.099	0.329	5e-06
Q0EEE2	906	Patched domain-containing	no	N/A	0.439	0.100	0.302	2e-05

>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%)

Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
           L+  F +LG FIA HP +F   P+L++I+    F R   E   E+L +PQH   K ER +
Sbjct: 10  LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query: 181 VEQYFKMNYSARFNPTRITRPGRY 204
           V   F +N S     + +  PGRY
Sbjct: 70  VNSLFPVNRSKHRLYSDLQTPGRY 93

Mus musculus (taxid: 10090)

>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%)

Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
           L+  F +LG FIA HP +F   P+L++I+    F R   E   E+L +PQH   K ER +
Sbjct: 10  LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query: 181 VEQYFKMNYSARFNPTRITRPGRY 204
           V   F +N S     + +  PGRY
Sbjct: 70  VNSLFPVNRSKHRLYSDLQTPGRY 93

Homo sapiens (taxid: 9606)

>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 115 KCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTII-CITGFQRIFFEMDPEYLFSPQHGP 173
           + +   LK  F+ LG+F++RHP +F+ VP +LTII   T   R   E D E L +P H  
Sbjct: 4   QVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTVLSRFKPETDLEILVAPTHSL 63

Query: 174 GKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
            K ER++    F ++ S     + +  PGRY
Sbjct: 64  AKIERSLANSLFPIDQSKHKLYSDLHTPGRY 94

Danio rerio (taxid: 7955)

>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRI--FFEMDPEYLFSP 169
           C   C++  L R F  LG  +  HP  F++ P++LT    TGF  +    E D E  ++P
Sbjct: 114 CHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAALGTGFLYLPKDEEEDLEEHYTP 173

Query: 170 QHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYI 205
              P K ER  V+ +F  N S RF+ +R +    ++
Sbjct: 174 VGSPAKAERRFVQGHFTTNDSYRFSASRRSTEANFV 209

May play a role in sperm development or sperm function.

Homo sapiens (taxid: 9606)

>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTI-ICITGFQRIFFEMDPEYLFSPQHGPGKTERA 179
           L+    +LG+ ++RHP +F+ VP +LTI   ++   R   E D E L +P H   K ER+
Sbjct: 27  LQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERLVAPSHSLAKIERS 86

Query: 180 IVEQYFKMNYSARFNPTRITRPGRY 204
           +    F ++ S     + +  PGRY
Sbjct: 87  LASSLFPLDQSKSQLYSDLHTPGRY 111

Mus musculus (taxid: 10090)

>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2 SV=3

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTI-ICITGFQRIFFEMDPEYLFSPQHGPGKTERA 179
           L+    +LG+ ++RHP +F+ VP +LTI   ++   R   E D E L +P H   K ER+
Sbjct: 27  LQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQPEGDLERLVAPSHSLAKIERS 86

Query: 180 IVEQYFKMNYSARFNPTRITRPGRY 204
           +    F ++ S     + +  PGRY
Sbjct: 87  LASSLFPLDQSKSQLYSDLHTPGRY 111

Homo sapiens (taxid: 9606)

>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYL---FS 168
           C   C++  L R F + G  +  +P  F++ P LLT    TG   IF   + E L   ++
Sbjct: 71  CHTNCLEAPLSRGFQRFGATVGANPWLFLLGPALLTASLGTGL--IFLPKEKENLEEQYT 128

Query: 169 PQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           P   P K ER  V+ +F  N + RF+ +R +    +
Sbjct: 129 PIGSPAKAERRFVQGHFSTNDTYRFSASRTSSETNF 164

May play a role in sperm development or sperm function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
328720305	1024	PREDICTED: patched domain-containing pro	0.449	0.090	0.698	6e-36
158289940	981	AGAP010394-PA [Anopheles gambiae str. PE	0.439	0.092	0.688	5e-34
157117285	1160	hypothetical protein AaeL_AAEL001299 [Ae	0.444	0.079	0.670	6e-34
195174808	1218	GL16254 [Drosophila persimilis] gi|19411	0.502	0.085	0.609	2e-33
194864110	1169	GG10828 [Drosophila erecta] gi|190662642	0.429	0.076	0.666	1e-32
195475620	1169	GE19423 [Drosophila yakuba] gi|194176183	0.429	0.076	0.655	1e-32
45550365	1169	Patched-related, isoform A [Drosophila m	0.429	0.076	0.655	2e-32
194758170	1167	GF13815 [Drosophila ananassae] gi|190622	0.429	0.076	0.655	3e-32
198461242	1194	GA24099 [Drosophila pseudoobscura pseudo	0.444	0.077	0.625	3e-32
332022011	1069	Patched domain-containing protein 3 [Acr	0.429	0.083	0.703	3e-32

>gi|328720305|ref|XP_001943131.2| PREDICTED: patched domain-containing protein 3-like [Acyrthosiphon pisum]

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 82/93 (88%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG++C+D  L + F++LG+ +A+HPGYF++VP+ LT ICITGFQR+ FE+DPEYLFSP+ 
Sbjct: 3   CGIECIDKWLTKAFYRLGLVVAKHPGYFLLVPVFLTAICITGFQRVKFEIDPEYLFSPEQ 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           GPGKTERAIVE YFKMNYS+ FNPTRITRPGR+
Sbjct: 63  GPGKTERAIVESYFKMNYSSLFNPTRITRPGRF 95

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158289940|ref|XP_311553.4| AGAP010394-PA [Anopheles gambiae str. PEST] gi|157018400|gb|EAA07199.5| AGAP010394-PA [Anopheles gambiae str. PEST]

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 79/93 (84%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG+ CVDN L + FFKLG+FI RHPGYF+IVP+LL ++C+TGFQ+I +E+DPEYLFSP  
Sbjct: 3   CGISCVDNALNKSFFKLGLFIGRHPGYFLIVPVLLALLCMTGFQQIKYEIDPEYLFSPVR 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           G GK+ERAIVE YFK+NY+ RFN  RITRPGR+
Sbjct: 63  GEGKSERAIVESYFKVNYTHRFNVGRITRPGRF 95

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117285|ref|XP_001653012.1| hypothetical protein AaeL_AAEL001299 [Aedes aegypti] gi|108883354|gb|EAT47579.1| AAEL001299-PA [Aedes aegypti]

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 79/94 (84%)

Query: 111 GCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQ 170
            CG+ CVDN L R F+KLG+FI RHPGYF+IVP+LL ++C+TG+Q+I +E+DPEYLFSP 
Sbjct: 6   ACGISCVDNALNRTFYKLGIFIGRHPGYFLIVPVLLALLCMTGYQQIRYEIDPEYLFSPI 65

Query: 171 HGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
            G GK+ERAIVE YFK+NY+ RFN  RITRPGR+
Sbjct: 66  RGEGKSERAIVENYFKVNYTHRFNVGRITRPGRF 99

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195174808|ref|XP_002028162.1| GL16254 [Drosophila persimilis] gi|194116632|gb|EDW38675.1| GL16254 [Drosophila persimilis]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 86/105 (81%), Gaps = 1/105 (0%)

Query: 100 LSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFF 159
           ++  C Q  MA CG+ CVD TL + F+ LG+ IA+HPGYFII+P+LLT++C+TG+Q++ +
Sbjct: 23  MAHTCAQKQMA-CGISCVDKTLNKSFYHLGLKIAKHPGYFIIIPVLLTLLCMTGYQQLKY 81

Query: 160 EMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           ++DPEYLFSP  G GKTERA+VEQYFK+NY+ RFN  RITRPGR+
Sbjct: 82  QIDPEYLFSPIAGEGKTERAVVEQYFKVNYTHRFNVGRITRPGRF 126

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864110|ref|XP_001970775.1| GG10828 [Drosophila erecta] gi|190662642|gb|EDV59834.1| GG10828 [Drosophila erecta]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 80/93 (86%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG+ CVD TL + F+ LGV IA+HPGYFII+P+LLT++C+TG+Q++ +++DPEYLFSP  
Sbjct: 3   CGISCVDKTLNKSFYHLGVCIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIA 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           G GKTERAIVEQYFK+NY+ RFN  RITRPGR+
Sbjct: 63  GEGKTERAIVEQYFKVNYTHRFNVGRITRPGRF 95

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195475620|ref|XP_002090082.1| GE19423 [Drosophila yakuba] gi|194176183|gb|EDW89794.1| GE19423 [Drosophila yakuba]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG+ CVD TL + F+ LG+ IA+HPGYFII+P+LLT++C+TG+Q++ +++DPEYLFSP  
Sbjct: 3   CGISCVDKTLNKSFYHLGISIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIA 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           G GKTERAIVEQYFK+NY+ RFN  RITRPGR+
Sbjct: 63  GEGKTERAIVEQYFKVNYTHRFNVGRITRPGRF 95

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550365|ref|NP_610209.2| Patched-related, isoform A [Drosophila melanogaster] gi|386767136|ref|NP_001246145.1| Patched-related, isoform B [Drosophila melanogaster] gi|386767138|ref|NP_001246146.1| Patched-related, isoform C [Drosophila melanogaster] gi|28316966|gb|AAO39504.1| RE45036p [Drosophila melanogaster] gi|45445413|gb|AAF57274.2| Patched-related, isoform A [Drosophila melanogaster] gi|383302268|gb|AFH07900.1| Patched-related, isoform B [Drosophila melanogaster] gi|383302269|gb|AFH07901.1| Patched-related, isoform C [Drosophila melanogaster]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG+ CVD TL + F+ LG+ IA+HPGYFII+P+LLT++C+TG+Q++ +++DPEYLFSP  
Sbjct: 3   CGISCVDKTLNKSFYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIA 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           G GKTERAIVEQYFK+NY+ RFN  RITRPGR+
Sbjct: 63  GEGKTERAIVEQYFKVNYTHRFNVGRITRPGRF 95

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758170|ref|XP_001961335.1| GF13815 [Drosophila ananassae] gi|190622633|gb|EDV38157.1| GF13815 [Drosophila ananassae]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQH 171
           CG+ CVD TL + F+ LG+ IA+HPGYFII+P+LLT++C+TG+Q++ +++DPEYLFSP  
Sbjct: 3   CGISCVDRTLNKSFYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIA 62

Query: 172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           G GKTERAIVEQYFK+NY+ RFN  RITRPGR+
Sbjct: 63  GEGKTERAIVEQYFKVNYTHRFNVGRITRPGRF 95

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461242|ref|XP_002138974.1| GA24099 [Drosophila pseudoobscura pseudoobscura] gi|198137280|gb|EDY69532.1| GA24099 [Drosophila pseudoobscura pseudoobscura]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 81/96 (84%)

Query: 109 MAGCGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFS 168
           +  CG+ CVD TL + F+ LG+ IA+HPGYFII+P+LLT++C+TG+Q++ +++DPEYLFS
Sbjct: 7   LMACGISCVDKTLNKSFYHLGLKIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFS 66

Query: 169 PQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           P  G GKTERA+VEQYFK+NY+ RFN  RITRPGR+
Sbjct: 67  PIAGEGKTERAVVEQYFKVNYTHRFNVGRITRPGRF 102

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022011|gb|EGI62337.1| Patched domain-containing protein 3 [Acromyrmex echinatior]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 77/91 (84%)

Query: 114 LKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGP 173
           L CVD+ L R F+K+G+ + RHPGYF+IVPILL  IC TG+QRI +E+DPEYLFSP +GP
Sbjct: 4   LTCVDDFLNRAFYKVGLHVGRHPGYFVIVPILLACICFTGYQRIHYEIDPEYLFSPVNGP 63

Query: 174 GKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
           GKTERAIVEQYFK+NYS +FN  RITRPGR+
Sbjct: 64  GKTERAIVEQYFKVNYSHQFNLGRITRPGRF 94

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
FB|FBgn0262867	1169	Ptr "Patched-related" [Drosoph	0.449	0.079	0.569	1.5e-24
ZFIN|ZDB-GENE-061220-1	887	ptchd1 "patched domain contain	0.405	0.094	0.333	2.2e-05
UNIPROTKB|G5E5Q5	888	PTCHD1 "Uncharacterized protei	0.405	0.094	0.345	4e-05
UNIPROTKB|F1PCR3	888	PTCHD1 "Uncharacterized protei	0.405	0.094	0.345	4e-05
UNIPROTKB|Q96NR3	888	PTCHD1 "Patched domain-contain	0.405	0.094	0.345	4e-05
UNIPROTKB|F1SQ02	888	PTCHD1 "Uncharacterized protei	0.405	0.094	0.345	4e-05
MGI|MGI:2685233	888	Ptchd1 "patched domain contain	0.405	0.094	0.345	4e-05
UNIPROTKB|E1C4L0	343	LOC428417 "Uncharacterized pro	0.420	0.253	0.354	0.00056
ZFIN|ZDB-GENE-041210-239	827	si:ch211-250m6.7 "si:ch211-250	0.429	0.107	0.329	0.00063

FB|FBgn0262867 Ptr "Patched-related" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 53/93 (56%), Positives = 67/93 (72%)

Query:   112 CGLKCVDNTLKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQH 171
             CG+ CVD TL + F+ LG+ IA+HPGYF             G+Q++ +++DPEYLFSP  
Sbjct:     3 CGISCVDKTLNKSFYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIA 62

Query:   172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
             G GKTERAIVEQYFK+NY+ RFN  RITRPGR+
Sbjct:    63 GEGKTERAIVEQYFKVNYTHRFNVGRITRPGRF 95

GO:0005886 "plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=NAS

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

ZFIN|ZDB-GENE-061220-1 ptchd1 "patched domain containing 1" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 28/84 (33%), Positives = 39/84 (46%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F KLG F+A HP +F              F R   E + EYL +P+H   K E  +
Sbjct:    10 LRTSFHKLGHFVANHPVFFASAPVLISILLGASFSRYRIEENVEYLLAPKHSLAKIEGNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V+  F +N S     + +  PGRY
Sbjct:    70 VDSLFPVNRSKHTLYSDLQTPGRY 93

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G5E5Q5 PTCHD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F +LG FIA HP +F              F R   E   E+L +PQH   K ER +
Sbjct:    10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V   F +N S     + +  PGRY
Sbjct:    70 VNSLFPVNRSKHRLYSDLQTPGRY 93

GO:0050890 "cognition" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|F1PCR3 PTCHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F +LG FIA HP +F              F R   E   E+L +PQH   K ER +
Sbjct:    10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V   F +N S     + +  PGRY
Sbjct:    70 VNSLFPVNRSKHRLYSDLQTPGRY 93

GO:0050890 "cognition" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|Q96NR3 PTCHD1 "Patched domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F +LG FIA HP +F              F R   E   E+L +PQH   K ER +
Sbjct:    10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V   F +N S     + +  PGRY
Sbjct:    70 VNSLFPVNRSKHRLYSDLQTPGRY 93

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050890 "cognition" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1SQ02 PTCHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F +LG FIA HP +F              F R   E   E+L +PQH   K ER +
Sbjct:    10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V   F +N S     + +  PGRY
Sbjct:    70 VNSLFPVNRSKHRLYSDLQTPGRY 93

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

MGI|MGI:2685233 Ptchd1 "patched domain containing 1" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 29/84 (34%), Positives = 38/84 (45%)

Query:   121 LKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
             L+  F +LG FIA HP +F              F R   E   E+L +PQH   K ER +
Sbjct:    10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69

Query:   181 VEQYFKMNYSARFNPTRITRPGRY 204
             V   F +N S     + +  PGRY
Sbjct:    70 VNSLFPVNRSKHRLYSDLQTPGRY 93

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050890 "cognition" evidence=ISO

UNIPROTKB|E1C4L0 LOC428417 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
 Identities = 33/93 (35%), Positives = 40/93 (43%)

Query:   116 CVDNTLKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFE----MDPEYLFSPQH 171
             CV+  L RLF  LG  +A  P  F             GF  IF       D E  F+P  
Sbjct:    18 CVERPLTRLFEALGRVVAACPWPFVLLPPLLSAGLGAGF--IFLPGRQTNDIEGQFTPTG 75

Query:   172 GPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
             GP K ER  V +YF  + S RF+  R+   G Y
Sbjct:    76 GPAKAERDFVRRYFPTDDSERFSAERLPTEGAY 108

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041210-239 si:ch211-250m6.7 "si:ch211-250m6.7" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
 Identities = 32/97 (32%), Positives = 43/97 (44%)

Query:   112 CGLKCVDNTLKRLFFKLGVFIARHPGYFXXXXXXXXXXXXXGFQRIFFEM----DPEYLF 167
             C   C++  L  +F KLG  I RHP  F             GF  IF +     D E  F
Sbjct:     3 CKTDCIERPLSLVFEKLGRLIGRHPVVFILLSLYVAAGLGAGF--IFLKEREANDIEDQF 60

Query:   168 SPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
             +P +GP K +R IV ++F    S  F+  R+   G Y
Sbjct:    61 TPVNGPAKRDREIVAEHFPP--SDEFSQLRLMSEGTY 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.144   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       194   0.00076  111 3  11 22  0.39    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.01u 0.07s 16.08t   Elapsed:  00:00:26
  Total cpu time:  16.01u 0.07s 16.08t   Elapsed:  00:00:30
  Start:  Thu Aug 15 14:01:39 2013   End:  Thu Aug 15 14:02:09 2013

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
TIGR00917	1204	TIGR00917, 2A060601, Niemann-Pick C type protein f	3e-05

>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
           L R F K G+++AR+PG  + + + + ++   G      E DP  L+     PG +  A+
Sbjct: 309 LARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWV---APG-SRAAL 364

Query: 181 VEQYFKMNYS 190
            +++F  ++ 
Sbjct: 365 EKEFFDTHFG 374

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	99.47
TIGR00918	1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	99.44
KOG1934|consensus	868		99.31
KOG1933|consensus	1201		99.03
PF02460	798	Patched: Patched family; InterPro: IPR003392 The t	98.76
KOG1934|consensus	868		98.75
TIGR00921	719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	96.79
KOG1935|consensus	1143		96.6
TIGR00833	910	actII Transport protein. Characterized members of	95.92
COG1033	727	Predicted exporters of the RND superfamily [Genera	95.87
TIGR00921	719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	95.08
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	94.57
COG1033	727	Predicted exporters of the RND superfamily [Genera	94.33
TIGR03480	862	HpnN hopanoid biosynthesis associated RND transpor	93.36
TIGR00920	886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	90.8
COG2409	937	Predicted drug exporters of the RND superfamily [G	90.24
TIGR03480	862	HpnN hopanoid biosynthesis associated RND transpor	82.95

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=99.47  E-value=3.7e-14  Score=145.65  Aligned_cols=77  Identities=25%  Similarity=0.453  Sum_probs=74.2

Q ss_pred             hhhHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCCCC
Q psy10742        114 LKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYS  190 (207)
Q Consensus       114 ~~~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~~s  190 (207)
                      ..++++.++++|+++|.+|+||||++|+++++++++|+.|+.+++.++||++||+|++|++++|+++|+++|+++..
T Consensus       302 ~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r  378 (1204)
T TIGR00917       302 LATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYR  378 (1204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccc
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999744

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family

Probab=99.44  E-value=9.8e-14  Score=141.40  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=72.5

Q ss_pred             hhhHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCC
Q psy10742        114 LKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMN  188 (207)
Q Consensus       114 ~~~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~  188 (207)
                      .-+++..++++|+++|.+|+||||.+|++++++.++||+|+.++++|+||++||+.++|++++|+++|+++|||+
T Consensus        36 ~l~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~  110 (1145)
T TIGR00918        36 PLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEE  110 (1145)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCc
Confidence            345888999999999999999999999999999999999999999999999999999999999999999999998

>KOG1934|consensus

Probab=99.31  E-value=2.2e-12  Score=128.57  Aligned_cols=87  Identities=36%  Similarity=0.685  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCCCCccc
Q psy10742        114 LKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYSARF  193 (207)
Q Consensus       114 ~~~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~~s~~f  193 (207)
                      ..++++.+..+|+++|.+++||||.++++|+++|++||.|++.+..++|+.++|+|.||+||.|+++++|+|+.     |
T Consensus         2 ~~~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~-----~   76 (868)
T KOG1934|consen    2 SSRLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPL-----F   76 (868)
T ss_pred             cchHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccc-----c
Confidence            46789999999999999999999999999999999999998899999999999999999999999999999988     8


Q ss_pred             CCCcccCCCCCC
Q psy10742        194 NPTRITRPGRYI  205 (207)
Q Consensus       194 ~~~r~~~~~~~~  205 (207)
                      .|||.+...||+
T Consensus        77 ~~g~~~~~~~~~   88 (868)
T KOG1934|consen   77 YPGRTIAIFRFI   88 (868)
T ss_pred             CCCceeEeEEEE
Confidence            999988877764

>KOG1933|consensus

Probab=99.03  E-value=2.4e-10  Score=116.47  Aligned_cols=75  Identities=23%  Similarity=0.407  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCCCC
Q psy10742        116 CVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNYS  190 (207)
Q Consensus       116 ~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~~s  190 (207)
                      .+|..++.+|.++|-++++||..++.+.+.+.+.||.|++++.+++||++||+.++|++|.|+++|+.+|||+..
T Consensus       282 ~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r  356 (1201)
T KOG1933|consen  282 STETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYR  356 (1201)
T ss_pred             hHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhh
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999855

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog

Probab=98.76  E-value=1e-08  Score=101.67  Aligned_cols=80  Identities=28%  Similarity=0.487  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhcceeeccCCceecchhhhccc-CCCcCCchhhhhhHHHHHhhcCCeeeeccccccCCCcee
Q psy10742          1 MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKW-VDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRA   79 (207)
Q Consensus         1 LL~~~~~~Ei~~Ld~~I~n~~v~~~~~g~~~tY~dlCar~-~~~C~~n~~l~l~~~~~~~~~~~~nlTfP~~~~~~~~~~   79 (207)
                      ||++++++|+.+|+++|+++..++. +|+.++|+|+|+++ ++.|..|.+++... ........+++|||.+ +..+.++
T Consensus        57 lL~~~~l~ei~~l~~~I~~~~~v~~-~~~~~~~~dlC~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ltyP~~-~~~~~~~  133 (798)
T PF02460_consen   57 LLRPEYLDEILQLDDFIMNNITVED-DGETITYKDLCAKYCDLNCPVNSFLNFEL-ESNRSNDNINLTYPIM-NIFGQPI  133 (798)
T ss_pred             CcCHHHHHHHHHHHHHHHHhceecc-CCeeeeccccCCCccCCCcchhHHHHHHH-HhhccCCceeecCCcc-CCCCccc
Confidence            6999999999999999999766665 67789999999999 88998888876522 1222336799999999 7889999


Q ss_pred             eecc
Q psy10742         80 TIDP   83 (207)
Q Consensus        80 y~~~   83 (207)
                      |+-+
T Consensus       134 ~l~~  137 (798)
T PF02460_consen  134 FLGP  137 (798)
T ss_pred             ccCc
Confidence            8765

In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane

>KOG1934|consensus

Probab=98.75  E-value=9.7e-09  Score=102.84  Aligned_cols=81  Identities=27%  Similarity=0.405  Sum_probs=65.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhcceeeccCCceecchhhhccc-CCCcCCchhhhhhHHHHHhhcCCeeeeccccccCCCcee
Q psy10742          1 MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKW-VDSCFPNDILNLDYVIEEVETKALNLTFPIRFTFSPRRA   79 (207)
Q Consensus         1 LL~~~~~~Ei~~Ld~~I~n~~v~~~~~g~~~tY~dlCar~-~~~C~~n~~l~l~~~~~~~~~~~~nlTfP~~~~~~~~~~   79 (207)
                      ||++++++|+.+++++|+++.+++. +|..++|+|+|.+| +..|..|+++.++.... +...+++||||++ ...++++
T Consensus        96 iL~~~~l~e~~~i~~~i~~n~~~~~-~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lTYP~~-~~~~~~~  172 (868)
T KOG1934|consen   96 ILRPEYLDEVLQIDDYISNNLTVDV-DGRRITYKDFCMRNCDVNCFYNLLLILLKRLT-ISRPQFNLTYPIT-EVFGDKI  172 (868)
T ss_pred             ccCHHHHHHHHHHHHHHHhheeeec-CCceeehhhhhhcCCCcchhhHHHHHHhhccc-CCCCceEEecCcc-ccCCCce
Confidence            6999999999999999999999988 77779999999997 56677777776664221 1213599999999 6778999


Q ss_pred             eeccC
Q psy10742         80 TIDPR   84 (207)
Q Consensus        80 y~~~~   84 (207)
                      |+-|-
T Consensus       173 ~l~~~  177 (868)
T KOG1934|consen  173 YLGPN  177 (868)
T ss_pred             ecccc
Confidence            98654

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

Probab=96.79  E-value=0.0019  Score=63.19  Aligned_cols=68  Identities=22%  Similarity=0.288  Sum_probs=60.7

Q ss_pred             HHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCC
Q psy10742        120 TLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMN  188 (207)
Q Consensus       120 ~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~  188 (207)
                      .++++++++|.++.+||+..+++.+++++++..|+..++.+.|+.+ |.|+|+++++..+.++++|+..
T Consensus       367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~-~~p~~s~~~~~~~~l~~~f~~~  434 (719)
T TIGR00921       367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEK-FIPQDLPSLQARKVIESHMGGS  434 (719)
T ss_pred             HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhh-cCCCCcHHHHHHHHHHHHhCCC
Confidence            4677889999999999999999999999999999999988888865 5699999999999999999854

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.

>KOG1935|consensus

Probab=96.60  E-value=0.0016  Score=65.30  Aligned_cols=67  Identities=24%  Similarity=0.377  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHH
Q psy10742        116 CVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVE  182 (207)
Q Consensus       116 ~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~  182 (207)
                      ++...++++-.++|-.|.||-|.+|++.+++-+.|+.|+-..++|+|.++||+..+++--.|.++..
T Consensus        54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~  120 (1143)
T KOG1935|consen   54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTP  120 (1143)
T ss_pred             HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhcccc
Confidence            4666778888899999999999999999999999999999999999999999999999999998883

>TIGR00833 actII Transport protein

Probab=95.92  E-value=0.011  Score=60.07  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=60.1

Q ss_pred             HHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCC
Q psy10742        120 TLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMN  188 (207)
Q Consensus       120 ~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~  188 (207)
                      ..++++.+++.++.|||+.++++.+++.+++..|+..++.+.|+.+ +-|+++++++..+.++++|++.
T Consensus       345 ~~~~~~~~l~~~v~r~p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~~~~l~~~f~~~  412 (910)
T TIGR00833       345 KIRFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPLIRTGYDDEK-MIPTDLESVQGYEAADRHFPGN  412 (910)
T ss_pred             hHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCcCCCcHh-hcCCCCcHHHHHHHHHHhCCCc
Confidence            3456789999999999999999999998888899989888877755 6789999999999999999887

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]

Probab=95.87  E-value=0.012  Score=58.68  Aligned_cols=71  Identities=24%  Similarity=0.398  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCC
Q psy10742        117 VDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMN  188 (207)
Q Consensus       117 ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~  188 (207)
                      -...+.+.+.+.+...++||+..+++.++++++.-.|......++|..+ |-|+|+|+.+..+..+++||..
T Consensus       364 ~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs  434 (727)
T COG1033         364 KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGS  434 (727)
T ss_pred             cchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCC
Confidence            4456788999999999999999999999999999999999999999988 8999999999999999999987

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

Probab=95.08  E-value=0.024  Score=55.53  Aligned_cols=52  Identities=21%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             ccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcC
Q psy10742        134 RHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFK  186 (207)
Q Consensus       134 r~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~  186 (207)
                      +|||.++++.+++++++..|+.+++.++|+ .-|-|+|+++++..+.++++||
T Consensus         2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~-~~~~~~d~~~~~~~~~~~~~fg   53 (719)
T TIGR00921         2 RFRTAIILVFLALLILSAYGAQHLNVESDT-EKQLPKDFESYKWYHVLQREFG   53 (719)
T ss_pred             CCchhhHHHHHHHHHHHHHhcccceeccCh-hhhCCCCCHHHHHHHHHHHHHC
Confidence            799999999999999999999999999998 5678999999999999999998

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=94.57  E-value=0.036  Score=58.22  Aligned_cols=48  Identities=21%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcceeeccCCceecchhhhcccC--CCcCCchhhhhhH
Q psy10742          1 MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWV--DSCFPNDILNLDY   54 (207)
Q Consensus         1 LL~~~~~~Ei~~Ld~~I~n~~v~~~~~g~~~tY~dlCar~~--~~C~~n~~l~l~~   54 (207)
                      +|+++.++|+.+|++.|+++.+    +|  ++|+|+|.|..  +.|..+.+++++.
T Consensus       398 Vl~~e~L~~v~~L~~~I~~l~~----~~--~tl~diC~kp~~~~~C~v~S~~~yfq  447 (1204)
T TIGR00917       398 VLDDDNLKLLFDIQKKISQLFA----NL--ITLDDICFAPLSPYNCFIYSTCGYFQ  447 (1204)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhc----cC--CChhccccccCCCCCCccCCHHHHhc
Confidence            5899999999999999998842    33  78999999964  6799999998874

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]

Probab=94.33  E-value=0.067  Score=53.51  Aligned_cols=61  Identities=28%  Similarity=0.367  Sum_probs=57.6

Q ss_pred             HHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcC
Q psy10742        125 FFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFK  186 (207)
Q Consensus       125 F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~  186 (207)
                      |.++|.++.+||+..+++.+++++++..|..+++.++| -+.+.|++++..+..+.+++.|+
T Consensus         2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~-~~~~~~~d~~~~k~y~~~~~~f~   62 (727)
T COG1033           2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSG-TETFLPKDNEEYKNYDRLYKEFG   62 (727)
T ss_pred             hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCC-ccccCCCchHHHHHHHHHHHhhC
Confidence            78999999999999999999999999999999999999 67778999999999999999998

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN

Probab=93.36  E-value=0.089  Score=53.17  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=53.5

Q ss_pred             HHhhchhhhccchhhhHHHHHHHHHhhc-cccceeeecCccccccCCCCChHHHHHHHHHhcCCC
Q psy10742        125 FFKLGVFIARHPGYFIIVPILLTIICIT-GFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMN  188 (207)
Q Consensus       125 F~~~G~~var~P~~fii~~llvt~~ls~-Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~  188 (207)
                      |.++-.++.+|||.++++.++++++++. +..+++.++|..+|. |++.+.++....+++.|+..
T Consensus         2 ~~~~~~~~~~~~~~vl~~~~~lt~~~~~~~~~~l~i~td~~~Ll-p~~~~~~~~~~~~~~~f~~~   65 (862)
T TIGR03480         2 LVRLVGFCARHAWWVLAIALLLTALSVIYTVTNLSVNTDTSDLL-SPDLPFRQDERAYEKAFPQD   65 (862)
T ss_pred             hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhceecCCHHHhc-CCCCchhHHHHHHHHhcCCc
Confidence            5677788999999999999999999885 788999999999985 57788888777888888764

The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase

Probab=90.80  E-value=0.14  Score=52.03  Aligned_cols=31  Identities=42%  Similarity=0.587  Sum_probs=27.5

Q ss_pred             HHHHHHhhchhhhccchhhhHHHHHHHHHhh
Q psy10742        121 LKRLFFKLGVFIARHPGYFIIVPILLTIICI  151 (207)
Q Consensus       121 l~~~F~~~G~~var~P~~fii~~llvt~~ls  151 (207)
                      +.++|+.+|+|||.|||=+|+..+-+|+++.
T Consensus         2 ~~rlf~~hg~fcashpweviv~~~tlt~c~l   32 (886)
T TIGR00920         2 LSRLFRAHGQFCASHPWEVIVATLTLTICML   32 (886)
T ss_pred             chhHhhhhcchhcCCCceehhhHHHHHHHHe
Confidence            5789999999999999999999998886643

>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]

Probab=90.24  E-value=0.27  Score=50.53  Aligned_cols=68  Identities=12%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             HHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhcCCCC
Q psy10742        121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNY  189 (207)
Q Consensus       121 l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F~~~~  189 (207)
                      -+++.+++|.++.++|+.++++.+++.+.+.+=+...+.- .+...+.|++.+++.=.+.+++|||...
T Consensus       357 ~~~~w~~~~~~v~~~P~~~l~~s~~ill~~~l~~~~~~~~-~~~~~~l~~~~~~~~g~~~~~~~Fg~g~  424 (937)
T COG2409         357 ESRFWRRVGTLVVRRPLAILVASLAILLVLALPLPLVRLG-YDDRKTLPSSNPSRKGYAAADRHFGQGR  424 (937)
T ss_pred             hcchhhhheeEEeeccHHHHHHHHHHHHHHHHHhcccccC-CcchhhccCccchhhHHHHHhhhccccc
Confidence            5778899999999999999999999988887765555444 4567788999999999999999999863

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN

Probab=82.95  E-value=1.7  Score=44.12  Aligned_cols=62  Identities=16%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             HHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCccccccCCCCChHHHHHHHHHhc
Q psy10742        123 RLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYF  185 (207)
Q Consensus       123 ~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~~~LwsP~~S~ar~E~~~~~~~F  185 (207)
                      +++.+++.++.+||+..+++.++++++...|+..++.+.||.+++ |+++++......+.+.+
T Consensus       435 ~~~~~~~~~~~~~~~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~~~~  496 (862)
T TIGR03480       435 ATLAPLDAFLRRHRRPVLGVTLILGIAALALLPQLRFDFNPLNLQ-DPKTESVRTFLELLADP  496 (862)
T ss_pred             hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHhccCCCCCCchhcc-CCCchHHHHHHHHHhCc
Confidence            467788889999999999999999888888888888889997665 56666666655555554

The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 41/195 (21%)

Query: 2   LTKEIWKELRLIDEIVHNTSIVFGEDDQVYR-YDDICAKWVDSC--FPNDILNLDY--VI 56
           + K I  +   ID I+ +            R +  + +K  +    F  ++L ++Y  ++
Sbjct: 41  MPKSILSK-EEIDHIIMSKD----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  EEVETKALNLTFPIRFTFSPR-RATIDPR--------RRLCVNTAQEQFLTPLSFPCPQI 107
             ++T+    +   R     R R   D +        R       ++  L  L  P   +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELR-PAKNV 153

Query: 108 S---MAGCGLK-------CVDNTLKRLFFKLGVF-IARHPGYFIIVPILLTIICITGFQR 156
               + G G K       C+   ++       +F +  +         +L ++     Q+
Sbjct: 154 LIDGVLGSG-KTWVALDVCLSYKVQCKMD-FKIFWL--NLKNCNSPETVLEML-----QK 204

Query: 157 IFFEMDPEYLFSPQH 171
           + +++DP +     H
Sbjct: 205 LLYQIDPNWTSRSDH 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00