Psyllid ID: psy10743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccEEccccEEEEHHHHHHHHHHccccccccccccccHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEEccEEEEccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHcccEEEEEccEcccEEcccccEEEHHHHHHHHHHHHHccccEEEEEEcHcHHHHHHHcccccccccHHHHHHHHHcccccccccccccEcccccccEEEEEccEEEEEcccccEEEEEEcccc
Coil and Loop (DISEMBL)
MLALLAGEFViatnmrvplvdsscigyflilpyhvslnqsreaptlemsckvaprlrlhmklfspqhgpgkteRAIVEQYFKMNysarfnptritrpdrfhlCIGFLGTYCIADGTQSIWRYQYCSNS
Flexible Loop (DISEMBL)
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKlfspqhgpgkTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS
Low Complexity Region (SEG)
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS
Disordered region (IsUnstruct)
**ALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQS****TLEMSCKVAPRLRLHMKLFS*******TERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYC***
Disordered Region (DISOPRED)
**ALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYC***
Disordered Region (DISEMBL)
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS
Disordered Region (DISPRO)
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
328720305	1024	PREDICTED: patched domain-containing pro	0.617	0.077	0.467	2e-12
332022011	1069	Patched domain-containing protein 3 [Acr	0.304	0.036	0.794	2e-09
195353826	1169	GM16477 [Drosophila sechellia] gi|194127	0.648	0.071	0.432	2e-09
380020532	1045	PREDICTED: patched domain-containing pro	0.421	0.051	0.590	2e-09
127462001	1047	patched-related protein [Apis mellifera	0.421	0.051	0.590	2e-09
45550365	1169	Patched-related, isoform A [Drosophila m	0.656	0.071	0.437	4e-09
194864110	1169	GG10828 [Drosophila erecta] gi|190662642	0.656	0.071	0.437	4e-09
195475620	1169	GE19423 [Drosophila yakuba] gi|194176183	0.562	0.061	0.493	4e-09
194758170	1167	GF13815 [Drosophila ananassae] gi|190622	0.656	0.071	0.437	5e-09
307211261	1098	Patched domain-containing protein 3 [Har	0.304	0.035	0.743	5e-09

>gi|328720305|ref|XP_001943131.2| PREDICTED: patched domain-containing protein 3-like [Acyrthosiphon pisum]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 13/92 (14%)

Query: 16  RVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMK---LFSPQHGPGKT 72
           R+ LV +   GYFL++P  ++           +      R++  +    LFSP+ GPGKT
Sbjct: 18  RLGLVVAKHPGYFLLVPVFLT----------AICITGFQRVKFEIDPEYLFSPEQGPGKT 67

Query: 73  ERAIVEQYFKMNYSARFNPTRITRPDRFHLCI 104
           ERAIVE YFKMNYS+ FNPTRITRP RF   I
Sbjct: 68  ERAIVESYFKMNYSSLFNPTRITRPGRFGRVI 99

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022011|gb|EGI62337.1| Patched domain-containing protein 3 [Acromyrmex echinatior]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 34/39 (87%)

Query: 62  LFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRF 100
           LFSP +GPGKTERAIVEQYFK+NYS +FN  RITRP RF
Sbjct: 56  LFSPVNGPGKTERAIVEQYFKVNYSHQFNLGRITRPGRF 94

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195353826|ref|XP_002043404.1| GM16477 [Drosophila sechellia] gi|194127527|gb|EDW49570.1| GM16477 [Drosophila sechellia]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 14/97 (14%)

Query: 26  GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMK-LFSPQHGPGKTERAIVEQYFKMN 84
           GYF+I+P  ++L        L M+     + ++  + LFSP  G GKTERAIVEQYFK+N
Sbjct: 28  GYFIIIPVLLTL--------LGMTGYQQLKYQIDPEYLFSPIAGEGKTERAIVEQYFKVN 79

Query: 85  YSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWR 121
           Y+ RFN  RITRP RF   I         DG +++ R
Sbjct: 80  YTHRFNVGRITRPGRFGRVI-----VITKDGDENMIR 111

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020532|ref|XP_003694137.1| PREDICTED: patched domain-containing protein 3-like [Apis florea]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 7/61 (11%)

Query: 62  LFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRF-HLCIGFLGTYCIADGTQSIW 120
           LFSP +GP KTERAIVEQYFK+NYS RFN  RITRP RF H+ I         DG +++ 
Sbjct: 57  LFSPINGPSKTERAIVEQYFKVNYSHRFNLGRITRPGRFGHVII------TSKDGNENLL 110

Query: 121 R 121
           R
Sbjct: 111 R 111

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|127462001|gb|ABO28476.1| patched-related protein [Apis mellifera scutellata]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 7/61 (11%)

Query: 62  LFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRF-HLCIGFLGTYCIADGTQSIW 120
           LFSP +GP KTERAIVEQYFK+NYS RFN  RITRP RF H+ I         DG +++ 
Sbjct: 57  LFSPINGPSKTERAIVEQYFKVNYSHRFNLGRITRPGRFGHVII------TSKDGNENLL 110

Query: 121 R 121
           R
Sbjct: 111 R 111

Source: Apis mellifera scutellata

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550365|ref|NP_610209.2| Patched-related, isoform A [Drosophila melanogaster] gi|386767136|ref|NP_001246145.1| Patched-related, isoform B [Drosophila melanogaster] gi|386767138|ref|NP_001246146.1| Patched-related, isoform C [Drosophila melanogaster] gi|28316966|gb|AAO39504.1| RE45036p [Drosophila melanogaster] gi|45445413|gb|AAF57274.2| Patched-related, isoform A [Drosophila melanogaster] gi|383302268|gb|AFH07900.1| Patched-related, isoform B [Drosophila melanogaster] gi|383302269|gb|AFH07901.1| Patched-related, isoform C [Drosophila melanogaster]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 12/96 (12%)

Query: 26  GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
           GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct: 28  GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query: 86  SARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWR 121
           + RFN  RITRP RF   I         DG +++ R
Sbjct: 81  THRFNVGRITRPGRFGRVI-----VITKDGDENMIR 111

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864110|ref|XP_001970775.1| GG10828 [Drosophila erecta] gi|190662642|gb|EDV59834.1| GG10828 [Drosophila erecta]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 12/96 (12%)

Query: 26  GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
           GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct: 28  GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query: 86  SARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWR 121
           + RFN  RITRP RF   I         DG +++ R
Sbjct: 81  THRFNVGRITRPGRFGRVI-----VITKDGDENMIR 111

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195475620|ref|XP_002090082.1| GE19423 [Drosophila yakuba] gi|194176183|gb|EDW89794.1| GE19423 [Drosophila yakuba]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 7/79 (8%)

Query: 26  GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
           GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct: 28  GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query: 86  SARFNPTRITRPDRFHLCI 104
           + RFN  RITRP RF   I
Sbjct: 81  THRFNVGRITRPGRFGRVI 99

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758170|ref|XP_001961335.1| GF13815 [Drosophila ananassae] gi|190622633|gb|EDV38157.1| GF13815 [Drosophila ananassae]

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 12/96 (12%)

Query: 26  GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
           GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct: 28  GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query: 86  SARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWR 121
           + RFN  RITRP RF   I         DG +++ R
Sbjct: 81  THRFNVGRITRPGRFGRVI-----VVTKDGDENMIR 111

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211261|gb|EFN87447.1| Patched domain-containing protein 3 [Harpegnathos saltator]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 62  LFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRF 100
           LFSP +GPGKTERA+VEQYFK+NYS +F+ +RITRP RF
Sbjct: 57  LFSPINGPGKTERAVVEQYFKVNYSYQFDLSRITRPGRF 95

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0262867	1169	Ptr "Patched-related" [Drosoph	0.531	0.058	0.506	6.2e-10

FB|FBgn0262867 Ptr "Patched-related" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 38/75 (50%), Positives = 46/75 (61%)

Query:    26 GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
             GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct:    28 GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query:    86 SARFNPTRITRPDRF 100
             + RFN  RITRP RF
Sbjct:    81 THRFNVGRITRPGRF 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.45    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.51u 0.10s 12.61t   Elapsed:  00:00:15
  Total cpu time:  12.51u 0.10s 12.61t   Elapsed:  00:00:15
  Start:  Thu Aug 15 14:04:34 2013   End:  Thu Aug 15 14:04:49 2013

GO:0005886 "plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=NAS

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG1934|consensus	868		99.46
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	99.04
TIGR00918	1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	97.79
PF02460	798	Patched: Patched family; InterPro: IPR003392 The t	97.48
KOG1933|consensus	1201		95.81
TIGR00921	719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	93.1
TIGR00833	910	actII Transport protein. Characterized members of	87.04
COG2409	937	Predicted drug exporters of the RND superfamily [G	84.14
COG1033	727	Predicted exporters of the RND superfamily [Genera	80.77

>KOG1934|consensus

Probab=99.46  E-value=5.9e-14  Score=130.66  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=76.8

Q ss_pred             HHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCCCc
Q psy10743          9 FVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSA   87 (128)
Q Consensus         9 ~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s~   87 (128)
                      ..+..|+|||.+|+||||+|+++|+++|+.+       +. |.+ ++.++|+.++|||.|++||.|+++.+|+||.    
T Consensus         8 ~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~-------s~-g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~----   75 (868)
T KOG1934|consen    8 ILKVLFRKYGLFVARYPWFFIIIPLLLTAVL-------SV-GILPLLTEDDARYLYTPSNARSRDERAVFKEFWPL----   75 (868)
T ss_pred             HHHHHHHHhCceeeecchHHHHHHHHHHHHH-------hc-CchhheecCCcceeeCCCCCchHHHHHHHHhhccc----
Confidence            4678999999999999999999999999999       44 644 6788999999999999999999999999999    


Q ss_pred             ccCCCcccCCCceEEEE
Q psy10743         88 RFNPTRITRPDRFHLCI  104 (128)
Q Consensus        88 ~F~p~Rl~t~grf~~vI  104 (128)
                       |.|+|....-||..++
T Consensus        76 -~~~g~~~~~~~~~~~~   91 (868)
T KOG1934|consen   76 -FYPGRTIAIFRFIYLK   91 (868)
T ss_pred             -cCCCceeEeEEEEEec
Confidence             9999999999999888

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=99.04  E-value=1.1e-10  Score=111.66  Aligned_cols=80  Identities=14%  Similarity=-0.007  Sum_probs=71.2

Q ss_pred             HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCCC
Q psy10743          8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYS   86 (128)
Q Consensus         8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s   86 (128)
                      .++.++|+|+|.+++||||.+|++++++++++       +. |+. ++.++|+++||+|.++|+|.|+++++++|..   
T Consensus       307 ~~l~~~F~~~G~~var~P~~vi~isllv~~~l-------~~-Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgp---  375 (1204)
T TIGR00917       307 GHLARFFTKYGIWVARNPGLVLCLSVSVVLLL-------GV-GLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGP---  375 (1204)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH-------HH-HHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCC---
Confidence            57889999999999999999999999999999       55 777 6778999999999999999999999888864   


Q ss_pred             cccCCCcccCCCceEEEEEEcC
Q psy10743         87 ARFNPTRITRPDRFHLCIGFLG  108 (128)
Q Consensus        87 ~~F~p~Rl~t~grf~~vIv~s~  108 (128)
                                ..|+.+||++++
T Consensus       376 ----------f~r~eqvii~~~  387 (1204)
T TIGR00917       376 ----------FYRIEQLIIAAV  387 (1204)
T ss_pred             ----------ccceEEEEEEec
Confidence                      247889998876

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family

Probab=97.79  E-value=9e-06  Score=78.48  Aligned_cols=73  Identities=14%  Similarity=-0.080  Sum_probs=65.2

Q ss_pred             hhhchHHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhh
Q psy10743          3 ALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYF   81 (128)
Q Consensus         3 ~~~~~~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~F   81 (128)
                      ||..-.++.++|+++|.+++||||..|++-+++.++|       +. |+. ++-+.|+++|....+|+++.|.+.++++|
T Consensus        36 ~l~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~-------~~-Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~  107 (1145)
T TIGR00918        36 PLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAF-------AV-GLRAANIETNVEQLWVEVGGRVSQELAYTRQKI  107 (1145)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHH-------Hh-hHhheEEEecHHHhccCCCChHHHHHHHHHhcc
Confidence            4455578999999999999999999999999999999       44 777 67789999999999999999999999999


Q ss_pred             cC
Q psy10743         82 KM   83 (128)
Q Consensus        82 p~   83 (128)
                      ..
T Consensus       108 gp  109 (1145)
T TIGR00918       108 GE  109 (1145)
T ss_pred             CC
Confidence            44

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog

Probab=97.48  E-value=4.2e-05  Score=69.86  Aligned_cols=54  Identities=28%  Similarity=0.204  Sum_probs=48.3

Q ss_pred             cccccccccCCCCCcHHHHHHHHhhhcCCCCcccCCCcccCCCceEEEEEEcCce
Q psy10743         56 LRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTY  110 (128)
Q Consensus        56 ~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s~~~  110 (128)
                      .+|++|+|+|.|+++|.|++..+++|+.+.+ +|.|+|....++|+.+++..+..
T Consensus         2 ~~~~~~~~tp~d~~~~~~~~~~s~~e~~~~~-~Ff~~~~~~~~~~~~i~a~~~~~   55 (798)
T PF02460_consen    2 SSDIEYLFTPDDIRGYTERNSRSRREPEDSS-EFFPSRGSPFRRFVIIIAKDGGS   55 (798)
T ss_pred             CCCcceecCCCCccccCCCcchhhhhhhhHh-hccCCCCCCceEEEEEEEecCCC
Confidence            3699999999999999999999999998766 79999999999998888886544

In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane

>KOG1933|consensus

Probab=95.81  E-value=0.0087  Score=58.74  Aligned_cols=69  Identities=13%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCC
Q psy10743          8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMN   84 (128)
Q Consensus         8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n   84 (128)
                      .+|..+|.++|-++++||...+.+-+.+.+++       ++ |++ +....|+.+|.+-.++++++|++.+..+|.-.
T Consensus       285 ~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~-------s~-gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf  354 (1201)
T KOG1933|consen  285 TFLEVFFRRWGTFCARNPLIVLYIILFVVIAL-------SS-GLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPF  354 (1201)
T ss_pred             HHHHHHhhhcccceecCchhhhHHHHHHHHHh-------cc-chhheeeeccchhhccCCcchhHHHHHHHhhhcCch
Confidence            57899999999999999999999888888888       55 778 45578999999999999999999999888753

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

Probab=93.10  E-value=0.058  Score=48.25  Aligned_cols=67  Identities=12%  Similarity=-0.037  Sum_probs=49.4

Q ss_pred             HHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCC
Q psy10743          9 FVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMN   84 (128)
Q Consensus         9 ~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n   84 (128)
                      .+.+.++|+|.++.|||+..+++-+++++++       .. |.. .+...|. .-|-|.++|++...+.++++|+..
T Consensus       367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~-------~~-~~~~l~~~~d~-~~~~p~~s~~~~~~~~l~~~f~~~  434 (719)
T TIGR00921       367 EIEEELSKVLSITVRHPVPALVAALIITGLG-------LY-GAAGIKPEVNI-EKFIPQDLPSLQARKVIESHMGGS  434 (719)
T ss_pred             HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHH-------HH-hccCCCcccCh-hhcCCCCcHHHHHHHHHHHHhCCC
Confidence            3456788999999999999888887777765       22 333 2223344 355699999999999999999853

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.

>TIGR00833 actII Transport protein

Probab=87.04  E-value=0.37  Score=45.54  Aligned_cols=66  Identities=11%  Similarity=-0.099  Sum_probs=46.9

Q ss_pred             HHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcCCC
Q psy10743         12 ATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY   85 (128)
Q Consensus        12 ~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~   85 (128)
                      +.+.+++.++.|||+..+++-+++.+++       .. ++...+.+.....|-|.+.+++.-.+.++++||.+.
T Consensus       348 ~~~~~l~~~v~r~p~~vl~v~~~ll~~~-------~~-~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~  413 (910)
T TIGR00833       348 FIWRRLGTAVVRRPWPILVTTLIISGVS-------LL-ALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNS  413 (910)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH-------HH-HhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCcc
Confidence            4688899999999998887776665554       11 333222232233456999999999999999998863

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.

>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]

Probab=84.14  E-value=0.67  Score=44.25  Aligned_cols=68  Identities=15%  Similarity=0.026  Sum_probs=52.0

Q ss_pred             HHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcCCCC
Q psy10743         11 IATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYS   86 (128)
Q Consensus        11 ~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s   86 (128)
                      .+..++.|..|.|||+.+++..+++++++       .. .+..-+.+.....+-|.+.|++.=++.+.+|||.+..
T Consensus       358 ~~~w~~~~~~v~~~P~~~l~~s~~ill~~-------~l-~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~  425 (937)
T COG2409         358 SRFWRRVGTLVVRRPLAILVASLAILLVL-------AL-PLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRL  425 (937)
T ss_pred             cchhhhheeEEeeccHHHHHHHHHHHHHH-------HH-HhcccccCCcchhhccCccchhhHHHHHhhhcccccc
Confidence            45677899999999999999999888887       11 2222233333555669999999999999999998654

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]

Probab=80.77  E-value=0.99  Score=42.63  Aligned_cols=69  Identities=10%  Similarity=-0.024  Sum_probs=52.1

Q ss_pred             HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCC
Q psy10743          8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY   85 (128)
Q Consensus         8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~   85 (128)
                      +.+...+.+.+.+..|||+.-|++=++++...        .-|.. ...+.|.++ |-|+|.|++...+.++++|..++
T Consensus       366 ~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~--------~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~  435 (727)
T COG1033         366 GKLEKRLSKIAKIIARHPVTVLVVALIIVGVS--------LYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSD  435 (727)
T ss_pred             hhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH--------HhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCc
Confidence            45668889999999999987777766665553        11333 233567776 78999999999999999998863

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00