Psyllid ID: psy10975

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSIPARLECRPE
ccccEEEEEcHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEEEcHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEccEEEEcccccEEEEEEcccccccccccccccccHHccccEEEEcccccccEEEEEcccccccccccccccccHHHHcHHHHHHcccHHHHHHHHHHccEEEEEccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEEEEEccccccHHccccccccccEEEccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccEEEEEEEccccccccc
ccccEEEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccccccHHHHHHccccccccccEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccEEEEEEEHHcccHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEcHHHHHEEEEEEEcccEEEEEEEccccccccccccccccHHHHHccccEEEEccccccEEEEEccHHHHHHHcccccccccHHHcHHHHHHHccHHHHHHHHHHcccEEEEccHHHHHHHccHHHccHHHHHHHHHHccccHHEEEcccEEEEEEEcccccEEEcccccccccccccEEEccHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHccccccccEEccccccccccccccccEEEcccc
MNVEGVFFVNDHLEKLMLEELRnscrpgmvggflpGVKQIANvaalpgivgrsvglpdvhsvpstqwlsdntmrssniwkrspltlgagnhyaEIQIVDEIYDKWAaskmgiedVGQVCVMihsgsrgfghqvatagnhyAEIQIVDEIYDKWAaskmgiedVGQVCVMIhsgsrgfghqVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKqfnttpddldmHVIYDAFAKqfnttpddldmhVIYDVSHNIAKTEEHMVDGKQKTLLVhrkgstrafpphhplipvdyqltgqpvliggtmgtcsyvltgtekgmqetfgstchgagrALSRAKSRRNLDYQEVLNKLESQgisirvaspklvmeeapesyknVTDVVDTchavgiskktfklrpVAVIKGIYLNERLAQsmfdhipvgvgskgiipmNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMfdhipvgvgskgiipmNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRmlnadpskvSMRAkkrglpqvsdrrgtgsskychgvgsiparlecrpe
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVhsvpstqwlsdntmrssNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNklesqgisirvaspKLVMEEAPESYKNVTDVVDTCHAvgiskktfklrpvAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKkrglpqvsdrrgtgsskychgvgsiparlecrpe
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSIPARLECRPE
****GVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQM***************LACARIN***NKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHG***************YQEVLNKLE*QGISIRVASPKLVM****ESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEY**************************************************
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMI*S***GFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRA**********VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSIPARL*****
MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK*********************SKYCHGVGSIPARLECRPE
*NVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSIPARLECRP*
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MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQWLSDNTMRSSNIWKRSPLTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYLNERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHFERLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQVSDRRGTGSSKYCHGVGSIPARLECRPE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q9VIW7506 tRNA-splicing ligase RtcB yes N/A 0.712 0.808 0.583 1e-141
B0WCT9506 tRNA-splicing ligase RtcB N/A N/A 0.710 0.806 0.567 1e-138
Q7Q412506 tRNA-splicing ligase RtcB yes N/A 0.709 0.804 0.564 1e-137
Q17FP1506 tRNA-splicing ligase RtcB N/A N/A 0.710 0.806 0.563 1e-136
Q6NZS4505 tRNA-splicing ligase RtcB yes N/A 0.709 0.805 0.577 1e-136
A8QC60505 tRNA-splicing ligase RtcB N/A N/A 0.709 0.805 0.558 1e-134
A7RKF6505 tRNA-splicing ligase RtcB N/A N/A 0.709 0.805 0.566 1e-134
Q561P3505 tRNA-splicing ligase RtcB yes N/A 0.709 0.805 0.564 1e-134
A9CB42505 tRNA-splicing ligase RtcB N/A N/A 0.709 0.805 0.564 1e-132
Q4R6X4505 tRNA-splicing ligase RtcB N/A N/A 0.709 0.805 0.564 1e-132
>sp|Q9VIW7|RTCB_DROME tRNA-splicing ligase RtcB homolog OS=Drosophila melanogaster GN=CG9987 PE=1 SV=1 Back     alignment and function desciption
 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/478 (58%), Positives = 327/478 (68%), Gaps = 69/478 (14%)

Query: 1   MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGF------------LPGVK---------- 38
           MNVEG F+VN  LE+LMLEEL+NSCRPG VGGF            LPG+           
Sbjct: 31  MNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIH 90

Query: 39  -----QIANVAAL----------PGIVGRSVGLPDVHSVPSTQWLSD----NTMRSSNIW 79
                 I N+AA           PG VG  +    V  + +  +  D        + +++
Sbjct: 91  SGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINC-GVRLLRTNLYEKDVQPVKEQLAQSLF 149

Query: 80  KRSPLTLGA-GNHYAEIQIVDEIYDK-----------WAASKMGIEDVGQVC------VM 121
              P+ +G+ G      + ++E  +            WA  K   E+ G++       V 
Sbjct: 150 DHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAKVS 209

Query: 122 IHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH 179
           + +  RG   Q+ T  AGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFGH
Sbjct: 210 MRAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFGH 268

Query: 180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQFNTTPDDLDMH------V 233
           QVATDALVQMEKAMKRD IETNDRQLACARINS + + + K      +   ++      +
Sbjct: 269 QVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328

Query: 234 IYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPL 293
              AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLVHRKGSTRAFPPHHPL
Sbjct: 329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPL 388

Query: 294 IPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQE 353
           IPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFGSTCHGAGRALSRAKSRRNLDY++
Sbjct: 389 IPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKD 448

Query: 354 VLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
           VL+KL+  GI+IRVASPKLVMEEAPESYK+VTDVVDTCHA GISKK  K+RP+AVIKG
Sbjct: 449 VLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 3
>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus GN=CPIJ004874 PE=3 SV=1 Back     alignment and function description
>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae GN=AGAP008147 PE=3 SV=2 Back     alignment and function description
>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336 PE=3 SV=1 Back     alignment and function description
>sp|Q6NZS4|RTCB_DANRE tRNA-splicing ligase RtcB homolog OS=Danio rerio GN=zgc:76871 PE=2 SV=1 Back     alignment and function description
>sp|A8QC60|RTCB_BRUMA tRNA-splicing ligase RtcB homolog OS=Brugia malayi GN=Bm1_49220 PE=3 SV=1 Back     alignment and function description
>sp|A7RKF6|RTCB_NEMVE tRNA-splicing ligase RtcB homolog OS=Nematostella vectensis GN=v1g198406 PE=3 SV=1 Back     alignment and function description
>sp|Q561P3|RTCB_XENTR tRNA-splicing ligase RtcB homolog OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function description
>sp|A9CB42|RTCB_PAPAN tRNA-splicing ligase RtcB homolog OS=Papio anubis PE=3 SV=1 Back     alignment and function description
>sp|Q4R6X4|RTCB_MACFA tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis GN=QtsA-16939 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
242022637510 conserved hypothetical protein [Pediculu 0.714 0.803 0.633 1e-154
443722955446 hypothetical protein CAPTEDRAFT_227476 [ 0.693 0.892 0.644 1e-146
91093759506 PREDICTED: similar to GA22169-PA [Tribol 0.712 0.808 0.604 1e-143
307182427506 UPF0027 protein C22orf28 [Camponotus flo 0.712 0.808 0.596 1e-142
307204121506 UPF0027 protein C22orf28-like protein [H 0.712 0.808 0.594 1e-141
332375715506 unknown [Dendroctonus ponderosae] 0.712 0.808 0.598 1e-141
321455578505 hypothetical protein DAPPUDRAFT_302483 [ 0.712 0.809 0.594 1e-140
383862089506 PREDICTED: tRNA-splicing ligase RtcB hom 0.712 0.808 0.592 1e-140
156544293506 PREDICTED: tRNA-splicing ligase RtcB hom 0.712 0.808 0.594 1e-140
195398107506 GJ18257 [Drosophila virilis] gi|19414132 0.712 0.808 0.585 1e-139
>gi|242022637|ref|XP_002431746.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517061|gb|EEB19008.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 302/477 (63%), Positives = 335/477 (70%), Gaps = 67/477 (14%)

Query: 1   MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIV---------- 50
           M VEGVF+VN+HLEKLML+EL+N+CRPGMVGGFLPGVKQIANVAALPGIV          
Sbjct: 35  MKVEGVFYVNNHLEKLMLDELKNACRPGMVGGFLPGVKQIANVAALPGIVGKSVGLPDVH 94

Query: 51  ---GRSVG------LPDVHSVPS-----------TQWLSDNTMRSSNIWKRSPLTLGAGN 90
              G ++G      + D  SV S            + L  N M    +  +  LT    +
Sbjct: 95  SGYGFAIGNMAAFDMSDPKSVVSPGGVGFDINCGVRLLRTNLMEKDILPVKEQLTQSLFD 154

Query: 91  HYA-----------EIQIVDEIYDK-----------WAASKMGIEDVGQVC------VMI 122
           H               + ++E  +            WA  K   E+ G++       V +
Sbjct: 155 HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSM 214

Query: 123 HSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQ 180
            +  RG   Q+ T  AGNHYAEIQ+VDEIYDKWAASKMGIE  GQ+CVMIHSGSRGFGHQ
Sbjct: 215 RAKKRGL-PQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIESKGQICVMIHSGSRGFGHQ 273

Query: 181 VATDALVQMEKAMKRDNIETNDRQLACARINSN------KNKAFAKQFNTTPDDLDMHVI 234
           VATDALVQMEKAMKRDNIETNDRQLACARINS       K+ A A  F          + 
Sbjct: 274 VATDALVQMEKAMKRDNIETNDRQLACARINSPEGQDYLKSMAAAANFAWVNRSSMTFLC 333

Query: 235 YDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLI 294
             AFAKQFN+ PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLVHRKGSTRAFPPHHPLI
Sbjct: 334 RQAFAKQFNSCPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLVHRKGSTRAFPPHHPLI 393

Query: 295 PVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEV 354
           PVDYQLTGQPVLIGGTMGTCSYVLTGT++GM ETFGSTCHGAGRALSRAKSRRNLDYQ+V
Sbjct: 394 PVDYQLTGQPVLIGGTMGTCSYVLTGTQQGMLETFGSTCHGAGRALSRAKSRRNLDYQQV 453

Query: 355 LNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
           LNKL   GISIRVASPKLVMEEAPESYKNVTDVV+TCH  GISKK  KLRP+AVIKG
Sbjct: 454 LNKLSDMGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKCIKLRPIAVIKG 510

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|443722955|gb|ELU11596.1| hypothetical protein CAPTEDRAFT_227476 [Capitella teleta] Back     alignment and taxonomy information
>gi|91093759|ref|XP_969671.1| PREDICTED: similar to GA22169-PA [Tribolium castaneum] gi|270012976|gb|EFA09424.1| hypothetical protein TcasGA2_TC010635 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307182427|gb|EFN69663.1| UPF0027 protein C22orf28 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307204121|gb|EFN82990.1| UPF0027 protein C22orf28-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332375715|gb|AEE62998.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|321455578|gb|EFX66707.1| hypothetical protein DAPPUDRAFT_302483 [Daphnia pulex] Back     alignment and taxonomy information
>gi|383862089|ref|XP_003706516.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|156544293|ref|XP_001607419.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195398107|ref|XP_002057666.1| GJ18257 [Drosophila virilis] gi|194141320|gb|EDW57739.1| GJ18257 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
FB|FBgn0032781506 CG9987 [Drosophila melanogaste 0.533 0.604 0.747 7.5e-148
ZFIN|ZDB-GENE-040426-2096505 zgc:76871 "zgc:76871" [Danio r 0.533 0.605 0.710 8.2e-138
UNIPROTKB|F1NYI3507 C1H22orf28 "Uncharacterized pr 0.533 0.603 0.704 4.5e-137
UNIPROTKB|Q5E9T9505 Q5E9T9 "tRNA-splicing ligase R 0.533 0.605 0.697 9.4e-137
UNIPROTKB|Q9Y3I0505 C22orf28 "tRNA-splicing ligase 0.533 0.605 0.697 1.2e-136
UNIPROTKB|F2Z5V0505 C22orf28 "Uncharacterized prot 0.533 0.605 0.697 1.2e-136
UNIPROTKB|Q19PY3505 Q19PY3 "tRNA-splicing ligase R 0.533 0.605 0.697 1.2e-136
UNIPROTKB|A9CB42505 A9CB42 "tRNA-splicing ligase R 0.533 0.605 0.697 1.2e-136
UNIPROTKB|Q4R6X4505 QtsA-16939 "tRNA-splicing liga 0.533 0.605 0.697 1.2e-136
UNIPROTKB|Q561P3505 Q561P3 "tRNA-splicing ligase R 0.533 0.605 0.697 1.9e-136
FB|FBgn0032781 CG9987 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1185 (422.2 bits), Expect = 7.5e-148, Sum P(2) = 7.5e-148
 Identities = 240/321 (74%), Positives = 264/321 (82%)

Query:   105 WAASKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAAS 156
             WA  K   E+ G++       V + +  RG   Q+ T  AGNHYAEIQ+VDEIYDKW+AS
Sbjct:   187 WAEDKEHCEEYGRMLNADPAKVSMRAKKRGLP-QLGTLGAGNHYAEIQVVDEIYDKWSAS 245

Query:   157 KMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKN- 215
             KMGIE+ GQV VMIHSGSRGFGHQVATDALVQMEKAMKRD IETNDRQLACARINS +  
Sbjct:   246 KMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQ 305

Query:   216 ---KAFAKQFNTT-PDDLDMHVIY-DAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVD 270
                KA A   N    +   M  +   AFAK FNTTPDDLDMHVIYDVSHNIAK E HMVD
Sbjct:   306 DYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVD 365

Query:   271 GKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFG 330
             GK++ LLVHRKGSTRAFPPHHPLIPVDYQLTGQPVL+GGTMGTCSYVLTGTE+GMQETFG
Sbjct:   366 GKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMQETFG 425

Query:   331 STCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDT 390
             STCHGAGRALSRAKSRRNLDY++VL+KL+  GI+IRVASPKLVMEEAPESYK+VTDVVDT
Sbjct:   426 STCHGAGRALSRAKSRRNLDYKDVLDKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDT 485

Query:   391 CHAVGISKKTFKLRPVAVIKG 411
             CHA GISKK  K+RP+AVIKG
Sbjct:   486 CHAAGISKKCIKMRPIAVIKG 506
GO:0022008 "neurogenesis" evidence=IMP
ZFIN|ZDB-GENE-040426-2096 zgc:76871 "zgc:76871" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYI3 C1H22orf28 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T9 Q5E9T9 "tRNA-splicing ligase RtcB homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3I0 C22orf28 "tRNA-splicing ligase RtcB homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5V0 C22orf28 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q19PY3 Q19PY3 "tRNA-splicing ligase RtcB homolog" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A9CB42 A9CB42 "tRNA-splicing ligase RtcB homolog" [Papio anubis (taxid:9555)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6X4 QtsA-16939 "tRNA-splicing ligase RtcB homolog" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q561P3 Q561P3 "tRNA-splicing ligase RtcB homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6LXF9RTCB_METMP6, ., 5, ., 1, ., -0.38620.67770.8104yesN/A
Q6AYT3RTCB_RAT6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
O29399RTCB_ARCFU6, ., 5, ., 1, ., -0.50350.47900.5705yesN/A
C3YN79RTCB_BRAFL6, ., 5, ., 1, ., 30.55410.70900.8027yesN/A
Q8IIU6RTCB_PLAF76, ., 5, ., 1, ., 30.49260.70900.8043yesN/A
Q4N1R8RTCB_THEPA6, ., 5, ., 1, ., 30.49050.71080.8047yesN/A
Q54Y09RTCB_DICDI6, ., 5, ., 1, ., 30.51670.71080.8031yesN/A
Q99LF4RTCB_MOUSE6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
Q6NZS4RTCB_DANRE6, ., 5, ., 1, ., 30.57700.70900.8059yesN/A
Q7Q412RTCB_ANOGA6, ., 5, ., 1, ., 30.56450.70900.8043yesN/A
Q9Y3I0RTCB_HUMAN6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
A4S3S3RTCB_OSTLU6, ., 5, ., 1, ., 30.52180.70900.7918yesN/A
C1E9Y5RTCB_MICSR6, ., 5, ., 1, ., 30.55430.71250.7972yesN/A
Q9VIW7RTCB_DROME6, ., 5, ., 1, ., 30.58360.71250.8083yesN/A
Q5E9T9RTCB_BOVIN6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
Q561P3RTCB_XENTR6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
B3L4K9RTCB_PLAKH6, ., 5, ., 1, ., 30.48000.71250.8003yesN/A
Q00ZY2RTCB_OSTTA6, ., 5, ., 1, ., 30.52080.71250.7941yesN/A
Q19PY3RTCB_PIG6, ., 5, ., 1, ., 30.56450.70900.8059yesN/A
P90838RTCB_CAEEL6, ., 5, ., 1, ., 30.52620.71420.8118yesN/A
Q4U923RTCB_THEAN6, ., 5, ., 1, ., 30.47830.71080.7922yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
pfam01139419 pfam01139, UPF0027, Uncharacterized protein family 1e-110
COG1690432 COG1690, RtcB, Uncharacterized conserved protein [ 2e-89
PRK09588376 PRK09588, PRK09588, hypothetical protein; Reviewed 1e-24
TIGR03073356 TIGR03073, release_rtcB, release factor H-coupled 2e-18
pfam01139 419 pfam01139, UPF0027, Uncharacterized protein family 1e-12
COG1690 432 COG1690, RtcB, Uncharacterized conserved protein [ 2e-12
TIGR03073356 TIGR03073, release_rtcB, release factor H-coupled 8e-09
pfam01139 419 pfam01139, UPF0027, Uncharacterized protein family 9e-07
>gnl|CDD|216324 pfam01139, UPF0027, Uncharacterized protein family UPF0027 Back     alignment and domain information 
 Score =  336 bits (864), Expect = e-110
 Identities = 151/423 (35%), Positives = 220/423 (52%), Gaps = 69/423 (16%)

Query: 37  VKQIANVAALPGIVGRSVGLPDVHS---------VPSTQWLSDNT--------MRS---- 75
           ++Q+ANVA+LPGIV     +PDVH            +   +S           MR     
Sbjct: 18  IEQLANVASLPGIVKHVAAMPDVHPGYGFPIGGVAATDGAISPGGVGVDIGCGMRLLRTN 77

Query: 76  --------------SNIWKRSPLTLGAGNH----YAEIQIVDEIYDKWAASK-MGIEDVG 116
                           I++  P  +G+G       +E+  V E   +WA  +  G ++  
Sbjct: 78  LTAEDLRPKLKKLLDAIFRAVPSGVGSGGKIRLSKSELDEVLEEGAEWAVEEGYGWDEGA 137

Query: 117 QVCVMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGS 174
               +          Q+ T   GNH+ EIQ+VDEI+D+ AA   G+++ GQV +MIHSGS
Sbjct: 138 DPEKVSEKAKERGLPQLGTLGGGNHFIEIQVVDEIFDEEAAKAFGLDEKGQVWLMIHSGS 197

Query: 175 RGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSNKNK------AFAKQFNTTPDD 228
           RG GHQ+ATD L    KAMK+  I+  DRQLA   ++S + +      A A  +      
Sbjct: 198 RGLGHQIATDYLRLARKAMKKYGIKLPDRQLAYLPLDSEEGQDYLAAMAAAANYAWANRQ 257

Query: 229 LDMHVIYDAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFP 288
           L  H + +AF + F     DL++ ++YDV+HN AK EEH    K + L VHRKG+TRAF 
Sbjct: 258 LIAHRVREAFEEVFGGP--DLELRLVYDVAHNYAKKEEH----KGRELWVHRKGATRAF- 310

Query: 289 PHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRN 348
                        GQPVLI G+MGT SY++ GT   M E+FGS  HGAGR +SR+K+++ 
Sbjct: 311 ------------VGQPVLIPGSMGTGSYIVVGTGNAMAESFGSASHGAGRVMSRSKAKKK 358

Query: 349 LDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAV 408
              +E+   L   G  +R  S K V++EAPE+YK++ +VV+     G+ +   +L+P+ V
Sbjct: 359 FSGEELKEAL--AGGIVRCRSRKGVLDEAPEAYKDIDEVVEAQEEAGLVRVVARLKPLGV 416

Query: 409 IKG 411
           IKG
Sbjct: 417 IKG 419

Length = 419
>gnl|CDD|224604 COG1690, RtcB, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|181972 PRK09588, PRK09588, hypothetical protein; Reviewed Back     alignment and domain information
>gnl|CDD|213769 TIGR03073, release_rtcB, release factor H-coupled RctB family protein Back     alignment and domain information
>gnl|CDD|216324 pfam01139, UPF0027, Uncharacterized protein family UPF0027 Back     alignment and domain information
>gnl|CDD|224604 COG1690, RtcB, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|213769 TIGR03073, release_rtcB, release factor H-coupled RctB family protein Back     alignment and domain information
>gnl|CDD|216324 pfam01139, UPF0027, Uncharacterized protein family UPF0027 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
KOG3833|consensus505 100.0
PF01139420 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR0012 100.0
PRK09588376 hypothetical protein; Reviewed 100.0
TIGR03073356 release_rtcB release factor H-coupled RctB family 100.0
COG1690432 RtcB Uncharacterized conserved protein [Function u 100.0
KOG3833|consensus 505 99.94
COG1690 432 RtcB Uncharacterized conserved protein [Function u 99.64
PF01139 420 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR0012 98.88
TIGR03073356 release_rtcB release factor H-coupled RctB family 97.93
PRK09588376 hypothetical protein; Reviewed 97.9
>KOG3833|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.6e-105  Score=806.86  Aligned_cols=409  Identities=68%  Similarity=1.048  Sum_probs=389.1

Q ss_pred             CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc-------cccCCcc
Q psy10975          1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ-------WLSDNTM   73 (574)
Q Consensus         1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p-------~~~~p~~   73 (574)
                      |||.+.||++++|.+.|.++|+|.++++.+|+|+.|++||.|+|+|||++++++++||+|.|||||       |+.+|+.
T Consensus        30 M~veg~fYVn~~Leklm~~EL~~~c~~~~iGgflp~~kQI~nVasLPGivg~sIGLPDiHsGYGF~IGn~AAFD~nnPes  109 (505)
T KOG3833|consen   30 MNVEGTFYVNEELEKLMFEELKNSCRGGGIGGFLPAVKQIANVASLPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNNPES  109 (505)
T ss_pred             ceeeEEEEecHHHHHHHHHHHHhcCCCCccccccHHHHHHhhhhccCcccccccCCCccccccCccccceeeeccCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999       4455554


Q ss_pred             ---------------c--ccc----------------ccCCCCcccCCCC-------Cchhh---h---hhhhhhhhhhh
Q psy10975         74 ---------------R--SSN----------------IWKRSPLTLGAGN-------HYAEI---Q---IVDEIYDKWAA  107 (574)
Q Consensus        74 ---------------r--~t~----------------I~~~IP~GvG~~~-------~l~ei---g---~l~~~~d~~~~  107 (574)
                                     |  +||                ++..||.|+|+..       ++.+.   +   .|+++| .|.+
T Consensus       110 VvSPGGVGfDINCGVRlLRTNL~e~~v~p~keqLaq~lFdhIPvGvGS~g~ipm~a~dL~e~LEmG~dw~Lregy-~waE  188 (505)
T KOG3833|consen  110 VVSPGGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGRIPMNADDLEEALEMGMDWSLREGY-IWAE  188 (505)
T ss_pred             eecCCccceecccchhhhhhcccccccchHHHHHHHHHHhhCCcccCcCCcccccHHHHHHHHHhcccceeccCc-chhh
Confidence                           2  344                7788999999987       23322   2   567788 8999


Q ss_pred             hhhcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchh
Q psy10975        108 SKMGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGH  179 (574)
Q Consensus       108 d~~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~  179 (574)
                      |.++||+.|++.      |+.+++.||+. ||||  .||||+|+|.||||||++.|..+|+++.+|+++|||||||||||
T Consensus       189 DkEhCEeyGrml~aD~~kVs~raKkrGLp-QLGTLGaGNHYaEvQvVDEiyd~~~A~~MGI~~kGQvvVMiH~GSRGlGH  267 (505)
T KOG3833|consen  189 DKEHCEEYGRMLQADPRKVSQRAKKRGLP-QLGTLGAGNHYAEVQVVDEIYDKEAASKMGIDEKGQVVVMIHSGSRGLGH  267 (505)
T ss_pred             hHHHHHHhhhHhhCChHHhhhhhhhcCCc-cccccCCCCceEEEEehHHHhhHhhhhhcCcCCCCcEEEEEecCCccccc
Confidence            999999999654      88999999998 9999  99999999999999999999999999779999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCCCCCcee
Q psy10975        180 QVATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPDDLDMHV  253 (574)
Q Consensus       180 ~Ia~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~~~~~~l  253 (574)
                      ++|++-+-+|++++++.++-+.++||+|.+++|.++|+||..    +|||| ||..|. .+|++|.++|+.+|+|+++++
T Consensus       268 qVatdsLv~Mekamard~i~~nd~QLACarinS~Egq~Yl~~MaaAaNfAwVNRs~~Tf~~RqAF~KvF~~s~dd~dl~v  347 (505)
T KOG3833|consen  268 QVATDSLVKMEKAMARDKIVVNDRQLACARINSVEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFNTSPDDLDLHV  347 (505)
T ss_pred             hhhHHHHHHHHHhhhccceeecchhhcccccCChhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCccccceEE
Confidence            999999999999999999999999999999999999999987    89999 999999 999999999999999999999


Q ss_pred             EEEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCc
Q psy10975        254 IYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTC  333 (574)
Q Consensus       254 i~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~  333 (574)
                      |||++||+++.|+|.+||++++++||||||||||||.||.||-+|+.+||||+|.|||||+|||+.|+++|+.++|.|+|
T Consensus       348 iYDVsHNiaKvE~H~VdG~er~l~VHRKGatRAFPpHHPlIpvdYql~GQPVlvGGsMGTcSYvLtGtEqgm~etFGsTC  427 (505)
T KOG3833|consen  348 IYDVSHNIAKVEKHMVDGKERDLLVHRKGATRAFPPHHPLIPVDYQLIGQPVLVGGSMGTCSYVLTGTEQGMDETFGSTC  427 (505)
T ss_pred             EeehhhhHHHHHHHhcCCceeeeeeeccCccccCCCCCCCCccchhhcCCcEEecccccceeEEEeccccchhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEec
Q psy10975        334 HGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG  411 (574)
Q Consensus       334 HGAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg  411 (574)
                      |||||.+||.++|+.++.+++.+.|+..+|.+|+.+.+++.||||+.|||+.+|++.+..+||.+++.+|||+++|||
T Consensus       428 HGAGRaLSRakSrr~~~~~sV~D~L~~~~I~iR~aSpklvmEEAPesYKdVtdVVdtc~~aGiskK~~klrPiaVIKG  505 (505)
T KOG3833|consen  428 HGAGRALSRAKSRRNLTHESVLDKLRSRGIAIRVASPKLVMEEAPESYKDVTDVVDTCDAAGISKKAIKLRPIAVIKG  505 (505)
T ss_pred             ccchHHhhhhhhcccCcHHHHHHHHHhCCeEEEeCCccchhhhCchhhhhHHHHhhhhhhcccchhhhcccceeeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997

>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441 Back     alignment and domain information
>PRK09588 hypothetical protein; Reviewed Back     alignment and domain information
>TIGR03073 release_rtcB release factor H-coupled RctB family protein Back     alignment and domain information
>COG1690 RtcB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3833|consensus Back     alignment and domain information
>COG1690 RtcB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441 Back     alignment and domain information
>TIGR03073 release_rtcB release factor H-coupled RctB family protein Back     alignment and domain information
>PRK09588 hypothetical protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1uc2_A481 Hypothetical Extein Protein Of Ph1602 From Pyrococc 7e-66
1uc2_A 481 Hypothetical Extein Protein Of Ph1602 From Pyrococc 3e-13
4dwr_B487 Rna Ligase RtcbMN2+ COMPLEX Length = 487 8e-66
4dwr_B 487 Rna Ligase RtcbMN2+ COMPLEX Length = 487 3e-13
2epg_A487 Crystal Structure Of Ttha1785 Length = 487 4e-60
2epg_A 487 Crystal Structure Of Ttha1785 Length = 487 5e-09
>pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus Horikoshii Length = 481 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (633), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)
Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
           +GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG GHQVA+D L  ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258
Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
             I   DR+L      S + + +      A  F      +  H + ++F + F   P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318
Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
           L M ++YDV+HNI K EEH VDGK+  ++VHRKG+TRAFPP H  +P  Y+  GQPVLI 
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378
Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
           G+MGT SY+L GTE  M+ETFGSTCHGAGR LSR  + R      +  +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438
Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
           S ++V EEAP +YKNV +VV      GI+K   ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
>pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus Horikoshii Length = 481 Back     alignment and structure
>pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX Length = 487 Back     alignment and structure
>pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX Length = 487 Back     alignment and structure
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785 Length = 487 Back     alignment and structure
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785 Length = 487 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1uc2_A481 PH1602, hypothetical protein PH1602; structural ge 7e-99
1uc2_A 481 PH1602, hypothetical protein PH1602; structural ge 5e-15
1uc2_A 481 PH1602, hypothetical protein PH1602; structural ge 2e-07
1uc2_A481 PH1602, hypothetical protein PH1602; structural ge 9e-07
2epg_A487 Hypothetical protein TTHA1785; alpha-beta fold, st 3e-97
2epg_A 487 Hypothetical protein TTHA1785; alpha-beta fold, st 2e-15
2epg_A 487 Hypothetical protein TTHA1785; alpha-beta fold, st 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP: d.261.1.1 Length = 481 Back     alignment and structure
 Score =  307 bits (788), Expect = 7e-99
 Identities = 129/283 (45%), Positives = 181/283 (63%), Gaps = 8/283 (2%)

Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
           +GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG GHQVA+D L  ME+A+++
Sbjct: 200 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 258

Query: 196 DNIETNDRQLACARINSNKNKAFAKQFNTTPD------DLDMHVIYDAFAKQFNTTPD-D 248
             I   DR+L      S + + +        +       +  H + ++F + F   P+ D
Sbjct: 259 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 318

Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
           L M ++YDV+HNI K EEH VDGK+  ++VHRKG+TRAFPP H  +P  Y+  GQPVLI 
Sbjct: 319 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 378

Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
           G+MGT SY+L GTE  M+ETFGSTCHGAGR LSR  + R      +  +L ++GI +R A
Sbjct: 379 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 438

Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
           S ++V EEAP +YKNV +VV      GI+K   ++RP+ V KG
Sbjct: 439 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 481
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP: d.261.1.1 Length = 481 Back     alignment and structure
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP: d.261.1.1 Length = 481 Back     alignment and structure
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP: d.261.1.1 Length = 481 Back     alignment and structure
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Length = 487 Back     alignment and structure
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Length = 487 Back     alignment and structure
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Length = 487 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
4dwr_B487 PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA li 100.0
2epg_A487 Hypothetical protein TTHA1785; alpha-beta fold, st 100.0
2epg_A 487 Hypothetical protein TTHA1785; alpha-beta fold, st 99.82
4dwr_B 487 PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA li 99.81
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A* Back     alignment and structure
Probab=100.00  E-value=7.8e-111  Score=911.93  Aligned_cols=399  Identities=41%  Similarity=0.654  Sum_probs=363.3

Q ss_pred             CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc----c-------cc
Q psy10975          1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ----W-------LS   69 (574)
Q Consensus         1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p----~-------~~   69 (574)
                      ||||++||+|+.|++.|.++              +|++||.|+|+||||++++++|||+|+|||+|    .       ++
T Consensus        22 m~vp~~i~~~~~~~~~~~~d--------------~a~~Ql~n~A~LPgi~~~~~~MPD~H~G~G~pIG~V~a~~~~~g~I   87 (487)
T 4dwr_B           22 MRVPGRVYADEVLLEKMKND--------------RTLEQATNVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVKEGVI   87 (487)
T ss_dssp             CSSCEEEECCHHHHHHHHTS--------------SHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEEETTTCEE
T ss_pred             ccceEEEEeCHHHhhhhcch--------------HHHHHHHHHhcCCChhcceeeCCcCCCCCCCCEEEEEEecCcCCEE
Confidence            99999999999999998765              49999999999999999889999999999999    1       24


Q ss_pred             CCcc---------c--ccc----------------ccCCCCcccCCCCC-------chhh---h---hhhhhhhhhhhhh
Q psy10975         70 DNTM---------R--SSN----------------IWKRSPLTLGAGNH-------YAEI---Q---IVDEIYDKWAASK  109 (574)
Q Consensus        70 ~p~~---------r--~t~----------------I~~~IP~GvG~~~~-------l~ei---g---~l~~~~d~~~~d~  109 (574)
                      .|+.         +  +|+                |++.||+|+++.+.       ++++   +   .+..+| .|..|+
T Consensus        88 ~P~~VG~DIgCGm~l~~t~l~~~dl~~~l~~l~~~i~~~iP~G~g~~~~~~~~~~~~~~~l~~g~~w~~~~g~-~~~~dl  166 (487)
T 4dwr_B           88 SPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGY-GWERDL  166 (487)
T ss_dssp             CGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSSSTTCCCCCCGGGCHHHHHHTHHHHHHTTS-SCGGGG
T ss_pred             ecCCceecccCeeEEEecCCCHHHHhHHHHHHHHHHHhhCCCCcCccCccccchhhhhHHHhhhHHHHHhccc-chHhHH
Confidence            5776         1  222                77889999998762       2221   1   344555 678888


Q ss_pred             hcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHH
Q psy10975        110 MGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV  181 (574)
Q Consensus       110 ~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~I  181 (574)
                      +.+++.|++.      ++..+..|+.. ||||  +||||||||.+|+|||++.|++|||.+ +++||||||||||||++|
T Consensus       167 ~~~ee~g~~~~~d~~~v~~~~~~r~~~-qLGTLGgGNHFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~I  244 (487)
T 4dwr_B          167 ERLEEGGRMEGADPEAVSQRAKQRGAP-QLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQV  244 (487)
T ss_dssp             GGSGGGGCCTTCCGGGSCHHHHHHHGG-GTTCCCSSSCEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHH
T ss_pred             HHHHhcCCcccCChHHHhHHHHhhhhh-hccCCCCCceeEEEeeeehhcCHHHHHHcCCCc-CcEEEEEECCCCcccHHH
Confidence            8888887764      56666778887 9999  999999999999999999999999997 999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCC-CCCceeE
Q psy10975        182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPD-DLDMHVI  254 (574)
Q Consensus       182 a~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~-~~~~~li  254 (574)
                      |++|++.+.++++++++++|+++|+|+|++|++|++||.+    +|||| ||++|+ +++++|.++|+..++ ++++.++
T Consensus       245 a~~~~~~a~~~~~~~~~~~pd~~la~~~~~s~eg~~Yl~am~~A~~yA~~NR~~i~~~v~~~~~~~~~~~~~~~l~~~~~  324 (487)
T 4dwr_B          245 ASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIV  324 (487)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEE
T ss_pred             HHHHHHHHHHHHHHcCCCCCChhhccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCccccccccee
Confidence            9999999999999999999999999999999999999999    89999 999999 999999999998754 5678899


Q ss_pred             EEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCcC
Q psy10975        255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH  334 (574)
Q Consensus       255 ~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~H  334 (574)
                      |||+|||+++|.|+++|+.+++|||||||||||||+|+.+|..|+..||||||||||||+||||+|+++||++||+||||
T Consensus       325 ~dv~HN~~~~E~h~~~g~~~~~~VHRKGAt~A~~~~~~~~p~~~~~~Gq~viIPGSMgt~SyIv~G~~~g~~~s~~S~~H  404 (487)
T 4dwr_B          325 YDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGSTCH  404 (487)
T ss_dssp             EEEESEEEEEEEEEETTEEEEEEEEEESEEECCCTTCTTSCGGGTTTCCEEEECCSTTSCEEEEECCHHHHHHSSSEEEC
T ss_pred             eeeecccceeeeeeeccccceEEEEecccccccCCCCcccchhhhccCCeEEeccCCCCceEEEEeCCCCChhhhcCCCc
Confidence            99999999999999999888999999999999999999999999999999999999999999999976688999999999


Q ss_pred             CchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEeccch
Q psy10975        335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKGIYL  414 (574)
Q Consensus       335 GAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg~~~  414 (574)
                      ||||+|||++||++++.++++++|.++||.++|.++++++||||+|||||++||++++++||+++|++||||+||||..-
T Consensus       405 GAGR~mSR~~Ak~~~~~~~~~~~l~~~Gi~v~~~~~~~v~dEaP~AYKdId~Vi~~~~~~gLv~vVa~LkPv~~iKGge~  484 (487)
T 4dwr_B          405 GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKGAAA  484 (487)
T ss_dssp             SCCBSSCHHHHHTSSCHHHHHHHHHHTTCEEECSCSHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEECCCCC
T ss_pred             ccchhhhHHHHHhhcCHHHHHHHHHhCCeEEEECCCCcCcccChhccCCHHHHHHHHHhcCCeEEEEEEEEEEEEecCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             hH
Q psy10975        415 NE  416 (574)
Q Consensus       415 ~~  416 (574)
                      +|
T Consensus       485 ~e  486 (487)
T 4dwr_B          485 LE  486 (487)
T ss_dssp             CC
T ss_pred             CC
Confidence            43
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Back     alignment and structure
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Back     alignment and structure
>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d1uc2a_480 d.261.1.1 (A:) Hypothetical protein PH1602 {Archae 4e-97
d1uc2a_ 480 d.261.1.1 (A:) Hypothetical protein PH1602 {Archae 3e-17
d1uc2a_480 d.261.1.1 (A:) Hypothetical protein PH1602 {Archae 2e-07
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 480 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein PH1602
superfamily: Hypothetical protein PH1602
family: Hypothetical protein PH1602
domain: Hypothetical protein PH1602
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  302 bits (774), Expect = 4e-97
 Identities = 131/283 (46%), Positives = 182/283 (64%), Gaps = 8/283 (2%)

Query: 136 AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKR 195
           +GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG GHQVA+D L  ME+A+++
Sbjct: 199 SGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVASDYLRIMERAIRK 257

Query: 196 DNIETNDRQLACARINSNKNKAF------AKQFNTTPDDLDMHVIYDAFAKQFNTTPD-D 248
             I   DR+L      S + + +      A  F      +  H + ++F + F   P+ D
Sbjct: 258 YRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGD 317

Query: 249 LDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIG 308
           L M ++YDV+HNI K EEH VDGK+  ++VHRKG+TRAFPP H  +P  Y+  GQPVLI 
Sbjct: 318 LGMDIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIP 377

Query: 309 GTMGTCSYVLTGTEKGMQETFGSTCHGAGRALSRAKSRRNLDYQEVLNKLESQGISIRVA 368
           G+MGT SY+L GTE  M+ETFGSTCHGAGR LSR  + R      +  +L ++GI +R A
Sbjct: 378 GSMGTASYILAGTEGAMKETFGSTCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAA 437

Query: 369 SPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG 411
           S ++V EEAP +YKNV +VV      GI+K   ++RP+ V KG
Sbjct: 438 SMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 480
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 480 Back     information, alignment and structure
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 480 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d1uc2a_480 Hypothetical protein PH1602 {Archaeon Pyrococcus h 100.0
d1uc2a_ 480 Hypothetical protein PH1602 {Archaeon Pyrococcus h 99.73
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hypothetical protein PH1602
superfamily: Hypothetical protein PH1602
family: Hypothetical protein PH1602
domain: Hypothetical protein PH1602
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.8e-108  Score=887.01  Aligned_cols=394  Identities=41%  Similarity=0.665  Sum_probs=358.3

Q ss_pred             CcceEEEEeChHHHHHHHHHHhhccCCCCCCCcHhHHHHHHHHhcCCCceeeeeecccCCCCCCCc-----------ccc
Q psy10975          1 MNVEGVFFVNDHLEKLMLEELRNSCRPGMVGGFLPGVKQIANVAALPGIVGRSVGLPDVHSVPSTQ-----------WLS   69 (574)
Q Consensus         1 m~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~Ql~~~a~lPgv~~~~~~MPD~H~G~G~p-----------~~~   69 (574)
                      ||||++||+||+|++.+.++              .|++||.|+|+|||+++++++|||+|+|||+|           .++
T Consensus        21 m~vp~~i~~~~~~~~~~~~~--------------~a~~Ql~~~a~LPgvv~~~~~MPD~H~G~G~pIG~V~a~~~~~g~I   86 (480)
T d1uc2a_          21 MRVPGRVYADEVLLEKMKND--------------RTLEQATNVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFDVKEGVI   86 (480)
T ss_dssp             CSSCEEEECCHHHHHHHHSS--------------SHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEEETTTCEE
T ss_pred             CcccEEEEeCHHHhhhccch--------------hHHHHHHHHhcCCChhhhheeCCcCCCCCCCCEEEEEEecCcCCEE
Confidence            99999999999999998765              49999999999999998888999999999999           114


Q ss_pred             CCcc---------c--ccc----------------ccCCCCcccCCCCC-------chhh---h---hhhhhhhhhhhhh
Q psy10975         70 DNTM---------R--SSN----------------IWKRSPLTLGAGNH-------YAEI---Q---IVDEIYDKWAASK  109 (574)
Q Consensus        70 ~p~~---------r--~t~----------------I~~~IP~GvG~~~~-------l~ei---g---~l~~~~d~~~~d~  109 (574)
                      .|+.         |  +|+                |++.||+|++....       ++++   +   .+..++ .+..|+
T Consensus        87 ~P~~VG~DIgCGm~l~~t~l~~~~~~~~~~~l~~~l~~~ip~G~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~dl  165 (480)
T d1uc2a_          87 SPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGY-GWERDL  165 (480)
T ss_dssp             CGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSTTCCCSSCCCTTSCHHHHHHHHHHHHHTTS-SCGGGG
T ss_pred             ecCcceeCcCCeeEEEecCCCHHHHhHHHHHHHHHHHhhCCcCcCcCCccccchhhhhhhhhhhhHHHHhccc-chhhhH
Confidence            5776         1  121                67789999997651       2221   1   234444 567788


Q ss_pred             hcccccccee------eeccccCCCCCccccc--ccceeeeeehhhhhhcHHHHHhcCCCCcceEEEEEecCCCCchhHH
Q psy10975        110 MGIEDVGQVC------VMIHSGSRGFGHQVAT--AGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQV  181 (574)
Q Consensus       110 ~~~e~~G~l~------v~~~agsRg~g~QLGT--gGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~I  181 (574)
                      ..+++.|++.      ++.++..|+.. ||||  +||||||||+||+|||++.|++|||.+ |++||||||||||||++|
T Consensus       166 ~~~e~~g~~~~~d~~~v~~~~~~r~~~-qLGTLGgGNHFiEiq~ve~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~V  243 (480)
T d1uc2a_         166 ERLEEGGRMEGADPEAVSQRAKQRGAP-QLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQV  243 (480)
T ss_dssp             GGSGGGGCCTTCCGGGSCHHHHHHHGG-GSSCCCSTTCEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHH
T ss_pred             HHHHhcCCcccCChhhhhHHHHhcccc-cccccCCCceeEEEeeeeeecCHHHHHHcCCCc-CcEEEEEeCCCCcccHHH
Confidence            8888877664      56666778876 9999  999999999999999999999999998 999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCcccccccccCCHHHHHHHhh----hcccc-chHHHH-HHHHHHHHHcCCCCC-CCCceeE
Q psy10975        182 ATDALVQMEKAMKRDNIETNDRQLACARINSNKNKAFAKQ----FNTTP-DDLDMH-VIYDAFAKQFNTTPD-DLDMHVI  254 (574)
Q Consensus       182 a~~Y~~~~~~a~~~~~~a~~nr~L~~l~~~s~~g~~Yl~a----~n~A~-NR~~i~-~v~~~~~~~~~~~~~-~~~~~li  254 (574)
                      |++|++.+.++++++++++|+++++++|++|++|++||.+    +|||+ ||++|+ +++++|.++|+..++ +++++++
T Consensus       244 ~~~y~~~~~~~~~~~~~~~pd~~la~~p~~s~~g~~Yl~aM~~A~nfA~~NR~~i~~~i~~~l~~~~~~~~~~~l~~~~v  323 (480)
T d1uc2a_         244 ASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIV  323 (480)
T ss_dssp             HHHHHHHHHHHGGGSCCCCSSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCchhhccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCccccccccee
Confidence            9999999999999999999999999999999999999999    89999 999999 999999999998654 5678899


Q ss_pred             EEcccccccceeeeecCceeeeEEeecCccCCCCCCCCCCCcccccCCCeEEEcCCCCCCceEEeecCCccccccccCcC
Q psy10975        255 YDVSHNIAKTEEHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMQETFGSTCH  334 (574)
Q Consensus       255 ~D~~HN~~~~E~h~~dG~~~~~~VHRKGAt~A~pp~~~~~p~~~~~~G~pviIPGSMgt~SyIv~G~~~gn~~s~~Sa~H  334 (574)
                      ||++|||+++|.|.++|+.+++||||||||||+||+|+.+|.+|+.+||||||||||||+||||+|+++||++||||+||
T Consensus       324 ~dv~HN~~~~E~h~~~~~~~~~~VHRKGAt~A~~~~~~~~~~~~~~~GqpviIPGSMg~~Syiv~G~~~g~~~s~~Sa~H  403 (480)
T d1uc2a_         324 YDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGSTCH  403 (480)
T ss_dssp             EEEESEEEEEEEEEETTEEEEEEEEEESEEECCCTTCTTSCTTTTTTCCEEEECCCTTSCEEEEECCHHHHHHSSSEEEC
T ss_pred             eecccchhhhhhhccccccceEEEEeccccccCCCCCcccchhhhhCCCeeeeccCCCCceEEEEeCCCCChhhhCCCCc
Confidence            99999999999999999889999999999999999999999999999999999999999999999976689999999999


Q ss_pred             CchhhhhHHHHHhhCCHHHHHHHHHhCCeEEEEcCCccccccccccccChhHHHhhccccCceeEeEEEEeeEEEec
Q psy10975        335 GAGRALSRAKSRRNLDYQEVLNKLESQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAVGISKKTFKLRPVAVIKG  411 (574)
Q Consensus       335 GAGR~~SR~~Ak~~~~~~~~~~~L~~~gi~~~~~~~~~l~eEAP~AYKdI~~Vv~~~~~~gl~~~VarL~Pl~~iKg  411 (574)
                      ||||+|||++|+++++.++++++|+.+||.++|.+.++++||||+|||||++||++++++||+++|++||||+||||
T Consensus       404 GAGR~mSR~~A~~~~~~~~~~~~l~~~gi~v~~~~~~~l~dEAP~AYKdi~~Vi~~~~~~gl~~~VarlkPl~~iKG  480 (480)
T d1uc2a_         404 GAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG  480 (480)
T ss_dssp             SCCBSSCHHHHHHHCCHHHHHHHHHHTTCEEEESCHHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEEEC
T ss_pred             chhhhhhHHHHHhhcCHHHHHHHHHhCCcEEEECCCCcccccCccccCCHHHHHHHHHhcCCeeEEEEEEEEEEecC
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999998
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure