Psyllid ID: psy11091

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MEAVTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
cccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEcccEEEEEEccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccEEEcccccHHHHHHHHccccHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccEEEEcHHHHcccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccEEEEccccEEEEcccHHHHHHHcccccEEEEEcccccccccccccccccccccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcc
cccccccccccccHHHHHHHHHHHHcccccccccccccccccEEEEEccccEEEEEccHHHHHHHHHHHHcccccEEcccEEcccccccHHHHHHHHcccHHccccHHHccHHHHHHHccHHHHHHccccHHHcccccEEEEccHccHHHHHHHHHccHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccEEEEcHHHHccccccEEEEEEEEHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEEcc
meavtcvapdvETLVHMWKLLCMLEgtivnvpeknsprklrgemvqvdtTNILFVASGAYNGLDRLISRrknekylgfgapstesaGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEArdlidfgmipefvgrfpilvpfhSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDsmyevpgsdilmVHITEdtvlkntapsyirGIVFLdevdkigavpgihqlrdvggegvqQGMLKVSALAAFGIVFLDevdkigavpgihqlrdvggegvqQGMLKVSTSylfyrypntgylwyrypntgyiwyrypntgyiwyrypntgylwtsypntgylwyrypntgciwyrypktgylwyrypntgyLWYRYSR
meavtcvapdveTLVHMWKLLCMLEGTIvnvpeknsprklrGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAavsaeednkEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
MEAVTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
***VTCVAPDVETLVHMWKLLCMLEGTIVNVP*******LRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLG*************************************FLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRY**
***VTCV*PDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTES*********DL**************EKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY***************************EGVQQGMLKVSALAAFGIVFLDEVD********************QGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWY****************YLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYS*
MEAVTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAP******************************KDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
**********VETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
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MEAVTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSALAAFGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLKVSTSYLFYRYPNTGYLWYRYPNTGYIWYRYPNTGYIWYRYPNTGYLWTSYPNTGYLWYRYPNTGCIWYRYPKTGYLWYRYPNTGYLWYRYSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
O76031633 ATP-dependent Clp proteas yes N/A 0.544 0.350 0.677 3e-80
Q5R7N3633 ATP-dependent Clp proteas yes N/A 0.544 0.350 0.677 3e-80
Q5U2U0633 ATP-dependent Clp proteas yes N/A 0.544 0.350 0.677 4e-80
Q9JHS4634 ATP-dependent Clp proteas yes N/A 0.544 0.350 0.672 5e-80
Q11J59424 ATP-dependent Clp proteas yes N/A 0.487 0.469 0.463 8e-50
A4XHW1433 ATP-dependent Clp proteas yes N/A 0.524 0.494 0.438 3e-49
C3PI25431 ATP-dependent Clp proteas yes N/A 0.487 0.461 0.450 8e-49
Q982V5424 ATP-dependent Clp proteas yes N/A 0.487 0.469 0.454 2e-48
B0KBA3424 ATP-dependent Clp proteas yes N/A 0.487 0.469 0.463 2e-48
B0K532424 ATP-dependent Clp proteas yes N/A 0.487 0.469 0.463 2e-48
>sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 Back     alignment and function desciption
 Score =  299 bits (765), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 182/223 (81%), Gaps = 1/223 (0%)

Query: 20  LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
           LL +LEGTIVNVPEKNS RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct: 384 LLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 442

Query: 80  APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
            PS    GRRAA+ ADLAN+S   +  +D +EKD  L+ VEARDLI+FGMIPEFVGR P+
Sbjct: 443 TPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPV 502

Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
           +VP HSL+++ LV+ILTEP+NA+I QYQ LF+MDK +L  + +AL+AIARLALE+KTGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562

Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIRG 242
           GLR+IME LLL+ M+EVP SDI+ V + ++ V     P YIR 
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRA 605
ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP.
Homo sapiens (taxid: 9606)
>sp|Q5R7N3|CLPX_PONAB ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Pongo abelii GN=CLPX PE=2 SV=1 Back     alignment and function description
>sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Rattus norvegicus GN=Clpx PE=2 SV=1 Back     alignment and function description
>sp|Q9JHS4|CLPX_MOUSE ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Mus musculus GN=Clpx PE=1 SV=2 Back     alignment and function description
>sp|Q11J59|CLPX_MESSB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Mesorhizobium sp. (strain BNC1) GN=clpX PE=3 SV=1 Back     alignment and function description
>sp|A4XHW1|CLPX_CALS8 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpX PE=3 SV=1 Back     alignment and function description
>sp|C3PI25|CLPX_CORA7 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=clpX PE=3 SV=1 Back     alignment and function description
>sp|Q982V5|CLPX_RHILO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium loti (strain MAFF303099) GN=clpX PE=3 SV=1 Back     alignment and function description
>sp|B0KBA3|CLPX_THEP3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpX PE=3 SV=1 Back     alignment and function description
>sp|B0K532|CLPX_THEPX ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thermoanaerobacter sp. (strain X514) GN=clpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
242016280 589 ATP-dependent Clp protease ATP-binding s 0.492 0.341 0.779 8e-98
345488179 596 PREDICTED: ATP-dependent Clp protease AT 0.539 0.369 0.762 1e-95
66511659 586 PREDICTED: ATP-dependent Clp protease AT 0.539 0.375 0.757 3e-92
380017129 586 PREDICTED: ATP-dependent Clp protease AT 0.539 0.375 0.753 4e-92
307203708 589 ATP-dependent Clp protease ATP-binding s 0.539 0.373 0.748 7e-92
340729247 586 PREDICTED: ATP-dependent Clp protease AT 0.539 0.375 0.748 9e-92
350417778 586 PREDICTED: ATP-dependent Clp protease AT 0.539 0.375 0.744 6e-91
332018141 592 ATP-dependent Clp protease ATP-binding s 0.539 0.371 0.744 1e-90
322790207 588 hypothetical protein SINV_03991 [Solenop 0.539 0.374 0.739 1e-90
383855538 586 PREDICTED: ATP-dependent Clp protease AT 0.539 0.375 0.735 2e-90
>gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis] gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 198/222 (89%)

Query: 20  LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
           +L MLEGTIVNVPEKNSPRKLRGE +QVDTTNILFVASGAYNGLD LISRRKNEKYLGFG
Sbjct: 355 MLKMLEGTIVNVPEKNSPRKLRGETIQVDTTNILFVASGAYNGLDHLISRRKNEKYLGFG 414

Query: 80  APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
            P+T+S  RR ASLAD AN ++  SAE+DN EKDA+L+QVEARDLI+FGMIPEFVGRFP+
Sbjct: 415 VPATDSPNRRVASLADQANYNSPNSAEQDNAEKDAYLRQVEARDLIEFGMIPEFVGRFPV 474

Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
           LV FHSLN++ LVRILTEPKNA++ QYQ+LF+MDKVDLTFSPEAL+ IAR A+E+KTGAR
Sbjct: 475 LVAFHSLNEDFLVRILTEPKNAIVPQYQMLFSMDKVDLTFSPEALRGIARQAMERKTGAR 534

Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
           GLRAIME+LLLDSM+EVPGSDIL VH+ E+TV   + P YIR
Sbjct: 535 GLRAIMETLLLDSMFEVPGSDILAVHVNEETVAGRSPPVYIR 576

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345488179|ref|XP_001605256.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66511659|ref|XP_394615.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380017129|ref|XP_003692515.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|307203708|gb|EFN82674.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340729247|ref|XP_003402917.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350417778|ref|XP_003491590.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383855538|ref|XP_003703267.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
ZFIN|ZDB-GENE-040912-143610 clpx "ClpX caseinolytic peptid 0.541 0.362 0.695 2.4e-76
UNIPROTKB|E1BX77617 CLPX "Uncharacterized protein" 0.541 0.358 0.689 1e-75
UNIPROTKB|F1NA92630 CLPX "Uncharacterized protein" 0.541 0.350 0.689 1e-75
UNIPROTKB|F1N155607 CLPX "Uncharacterized protein" 0.541 0.364 0.680 5.7e-75
UNIPROTKB|E2QSS3633 CLPX "Uncharacterized protein" 0.541 0.349 0.680 5.7e-75
UNIPROTKB|O76031633 CLPX "ATP-dependent Clp protea 0.541 0.349 0.680 5.7e-75
UNIPROTKB|F1SJL5619 CLPX "Uncharacterized protein" 0.541 0.357 0.680 5.7e-75
RGD|1304883633 Clpx "ClpX caseinolytic peptid 0.541 0.349 0.680 5.7e-75
UNIPROTKB|Q5U2U0633 Clpx "ATP-dependent Clp protea 0.541 0.349 0.680 5.7e-75
MGI|MGI:1346017634 Clpx "caseinolytic peptidase X 0.541 0.348 0.675 7.3e-75
ZFIN|ZDB-GENE-040912-143 clpx "ClpX caseinolytic peptidase X homolog (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 155/223 (69%), Positives = 183/223 (82%)

Query:    20 LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
             LL +LEGTIVNVPEKN+ RKLRGE VQVDTTNILFVASGA+NGLDR+ISRRKNEKYLGFG
Sbjct:   360 LLKLLEGTIVNVPEKNT-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFG 418

Query:    80 APSTESAGRRAASLADLANQSAA-VSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
              PS    GRRAA+ ADLAN +   V A  + +EKD  LK VEARDLI+FGMIPEFVGR P
Sbjct:   419 TPSNMGKGRRAAAAADLANTTGGEVDAVAEIEEKDRLLKHVEARDLIEFGMIPEFVGRLP 478

Query:   139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
             ++VP HSL++E LVRILTEP+NA++ QYQ LF+MDK +L  +P+AL+AIARLALE+KTGA
Sbjct:   479 VVVPLHSLDEETLVRILTEPRNAVVPQYQALFSMDKCELNMTPDALRAIARLALERKTGA 538

Query:   199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
             RGLR+IME LLLD M+EVP SDI+ V +++D V     P YIR
Sbjct:   539 RGLRSIMEKLLLDPMFEVPHSDIVSVDVSKDVVQGKAPPQYIR 581
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0006457 "protein folding" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
UNIPROTKB|E1BX77 CLPX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA92 CLPX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N155 CLPX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSS3 CLPX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O76031 CLPX "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJL5 CLPX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304883 Clpx "ClpX caseinolytic peptidase X homolog (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U2U0 Clpx "ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1346017 Clpx "caseinolytic peptidase X (E.coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5U2U0CLPX_RATNo assigned EC number0.67710.54410.3507yesN/A
Q5R7N3CLPX_PONABNo assigned EC number0.67710.54410.3507yesN/A
Q9JHS4CLPX_MOUSENo assigned EC number0.67260.54410.3501yesN/A
O76031CLPX_HUMANNo assigned EC number0.67710.54410.3507yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
PRK05342412 PRK05342, clpX, ATP-dependent protease ATP-binding 6e-92
COG1219408 COG1219, ClpX, ATP-dependent protease Clp, ATPase 7e-86
TIGR00382413 TIGR00382, clpX, endopeptidase Clp ATP-binding reg 3e-76
PRK05201443 PRK05201, hslU, ATP-dependent protease ATP-binding 1e-23
TIGR00390441 TIGR00390, hslU, ATP-dependent protease HslVU, ATP 2e-21
smart0108690 smart01086, ClpB_D2-small, C-terminal, D2-small do 2e-21
COG1220444 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ 3e-21
pfam1043181 pfam10431, ClpB_D2-small, C-terminal, D2-small dom 3e-10
PRK05342412 PRK05342, clpX, ATP-dependent protease ATP-binding 1e-09
COG0542786 COG0542, clpA, ATP-binding subunits of Clp proteas 5e-09
PRK05342 412 PRK05342, clpX, ATP-dependent protease ATP-binding 9e-09
COG1219408 COG1219, ClpX, ATP-dependent protease Clp, ATPase 2e-07
COG1219 408 COG1219, ClpX, ATP-dependent protease Clp, ATPase 8e-07
pfam07724168 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) 1e-06
TIGR00382413 TIGR00382, clpX, endopeptidase Clp ATP-binding reg 7e-06
TIGR00382 413 TIGR00382, clpX, endopeptidase Clp ATP-binding reg 1e-05
COG1220444 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ 2e-05
PRK05201443 PRK05201, hslU, ATP-dependent protease ATP-binding 1e-04
PRK05201443 PRK05201, hslU, ATP-dependent protease ATP-binding 4e-04
COG1220444 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ 4e-04
TIGR00390441 TIGR00390, hslU, ATP-dependent protease HslVU, ATP 6e-04
TIGR02639730 TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi 0.003
cd03323 395 cd03323, D-glucarate_dehydratase, D-Glucarate dehy 0.003
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information 
 Score =  282 bits (724), Expect = 6e-92
 Identities = 101/223 (45%), Positives = 146/223 (65%), Gaps = 22/223 (9%)

Query: 20  LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
           LL +LEGT+ +VP +   +  + E +QVDTTNILF+  GA++GL+++I +R  +K +GFG
Sbjct: 207 LLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFG 266

Query: 80  APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
           A                      V ++++ + +   LKQVE  DLI FG+IPEF+GR P+
Sbjct: 267 AE---------------------VKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305

Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
           +     L++E LVRILTEPKNA+++QYQ LF MD V+L F+ EAL+AIA+ A+E+KTGAR
Sbjct: 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGAR 365

Query: 200 GLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR 241
           GLR+I+E +LLD M+E+P   D+  V IT++ V     P  I 
Sbjct: 366 GLRSILEEILLDVMFELPSREDVEKVVITKEVVEGKAKPLLIY 408

Length = 412
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>gnl|CDD|198154 smart01086, ClpB_D2-small, C-terminal, D2-small domain, of ClpB protein Back     alignment and domain information
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|204486 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB protein Back     alignment and domain information
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) Back     alignment and domain information
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 100.0
KOG0745|consensus564 100.0
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 100.0
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 100.0
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 100.0
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 100.0
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 100.0
COG1219 408 ClpX ATP-dependent protease Clp, ATPase subunit [P 99.89
KOG0745|consensus 564 99.84
CHL00095821 clpC Clp protease ATP binding subunit 99.84
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 99.83
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 99.82
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.74
COG1220444 HslU ATP-dependent protease HslVU (ClpYQ), ATPase 99.7
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 99.61
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 99.61
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.6
PRK10865857 protein disaggregation chaperone; Provisional 99.6
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.58
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 99.57
PF1043181 ClpB_D2-small: C-terminal, D2-small domain, of Clp 99.43
KOG1051|consensus898 99.33
PRK05342 412 clpX ATP-dependent protease ATP-binding subunit Cl 99.13
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 99.1
TIGR00382 413 clpX endopeptidase Clp ATP-binding regulatory subu 99.05
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 98.67
TIGR00763775 lon ATP-dependent protease La. This protein is ind 98.57
CHL00181287 cbbX CbbX; Provisional 97.83
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 97.16
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 96.25
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.56
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 92.61
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 92.45
TIGR01817534 nifA Nif-specific regulatory protein. This model r 92.17
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 90.74
KOG0726|consensus440 89.77
KOG0738|consensus491 89.43
CHL00181287 cbbX CbbX; Provisional 88.91
PF00004132 AAA: ATPase family associated with various cellula 88.15
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 88.04
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 87.85
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 87.12
TIGR02974329 phageshock_pspF psp operon transcriptional activat 86.68
PRK13341 725 recombination factor protein RarA/unknown domain f 86.43
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 86.4
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 86.35
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 86.22
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 86.07
KOG0727|consensus408 85.86
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 84.72
KOG0728|consensus404 84.0
PRK14700300 recombination factor protein RarA; Provisional 83.66
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 83.33
PRK09862506 putative ATP-dependent protease; Provisional 83.08
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 82.35
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 82.22
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 81.57
PRK11608326 pspF phage shock protein operon transcriptional ac 81.44
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 81.34
PRK05022509 anaerobic nitric oxide reductase transcription reg 80.62
KOG0740|consensus428 80.18
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-69  Score=531.32  Aligned_cols=217  Identities=48%  Similarity=0.797  Sum_probs=202.7

Q ss_pred             ccccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCC-CCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCC
Q psy11091          4 VTCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPS   82 (408)
Q Consensus         4 ~~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~-~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~   82 (408)
                      -.+|||||||||||||||||||||+++|||+|| ||| .|++++|||+||||||+|||+||++||.+|+++++|||+++.
T Consensus       180 N~SITRDVSGEGVQQALLKiiEGTvasVPPqGG-RKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~  258 (408)
T COG1219         180 NPSITRDVSGEGVQQALLKIIEGTVASVPPQGG-RKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEV  258 (408)
T ss_pred             CCCcccccCchHHHHHHHHHHcCceeccCCCCC-CCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccc
Confidence            368999999999999999999999999999999 777 689999999999999999999999999999999999999976


Q ss_pred             CCccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHH
Q psy11091         83 TESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAM  162 (408)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~l  162 (408)
                      ...                     .......+++++++|+||++||++|||+||||++..+++|++++|.+||+||||++
T Consensus       259 ~~~---------------------~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAl  317 (408)
T COG1219         259 KSK---------------------SKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNAL  317 (408)
T ss_pred             cch---------------------hhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHH
Confidence            421                     01123457899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCC-CCceEEEEeccccccccCccccc
Q psy11091        163 IQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPG-SDILMVHITEDTVLKNTAPSYIR  241 (408)
Q Consensus       163 Lkq~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg-~~~~~V~Id~~~V~~~~~p~~~R  241 (408)
                      ++||+++|++.|++|+|+++|++.||++|+++++|||+||++||.+|.|.|||+|+ .++.+|+||+++|.+..+|.++.
T Consensus       318 vKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l~~  397 (408)
T COG1219         318 VKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLLIY  397 (408)
T ss_pred             HHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCCceEEEEeHHHhCCCCCCeEee
Confidence            99999999999999999999999999999999999999999999999999999999 56999999999999999998874


Q ss_pred             c
Q psy11091        242 G  242 (408)
Q Consensus       242 G  242 (408)
                      .
T Consensus       398 ~  398 (408)
T COG1219         398 A  398 (408)
T ss_pred             c
Confidence            3

>KOG0745|consensus Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0745|consensus Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation [] Back     alignment and domain information
>KOG1051|consensus Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>KOG0726|consensus Back     alignment and domain information
>KOG0738|consensus Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>KOG0727|consensus Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>KOG0728|consensus Back     alignment and domain information
>PRK14700 recombination factor protein RarA; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1um8_A376 Crystal Structure Of Helicobacter Pylori Clpx Lengt 2e-45
1um8_A 376 Crystal Structure Of Helicobacter Pylori Clpx Lengt 2e-05
3hte_A363 Crystal Structure Of Nucleotide-Free Hexameric Clpx 1e-44
3hws_A363 Crystal Structure Of Nucleotide-Bound Hexameric Clp 1e-44
1ofh_A310 Asymmetric Complex Between Hslv And I-domain Delete 3e-09
1g3i_A444 Crystal Structure Of The Hsluv Protease-Chaperone C 4e-09
1im2_A444 Hslu, Haemophilus Influenzae, Selenomethionine Vari 5e-08
1do2_A442 Trigonal Crystal Form Of Heat Shock Locus U (Hslu) 1e-07
1e94_E449 Hslv-Hslu From E.Coli Length = 449 1e-07
1g4a_E443 Crystal Structures Of The Hslvu Peptidase-Atpase Co 1e-07
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 20  LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
           LL ++EG++VN+P K   +   G  +Q+DT++ILF+ +GA++GL  +I +R  +  LGF 
Sbjct: 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF- 229
Query: 80  APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
             + E   +                     KE++A L  V+  DL+ +G+IPE +GR P+
Sbjct: 230 --TQEKMSK---------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPV 266
Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
           L    S++ E +V IL +PKNA+I+QYQ LF MD+VDL F  EA++ IA+LALE+KTGAR
Sbjct: 267 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 326
Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
           GLRAI+E   LD M+++P      V IT+D VLK   P  I
Sbjct: 327 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 367
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 Back     alignment and structure
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 Back     alignment and structure
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 Back     alignment and structure
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 Back     alignment and structure
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444 Back     alignment and structure
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444 Back     alignment and structure
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442 Back     alignment and structure
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449 Back     alignment and structure
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 1e-85
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 9e-08
1um8_A 376 ATP-dependent CLP protease ATP-binding subunit CL; 3e-07
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 5e-85
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 9e-08
3hws_A 363 ATP-dependent CLP protease ATP-binding subunit CL; 3e-07
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 2e-40
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 7e-08
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 1e-07
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 4e-25
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 4e-06
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 5e-04
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 Back     alignment and structure
 Score =  264 bits (678), Expect = 1e-85
 Identities = 94/223 (42%), Positives = 134/223 (60%), Gaps = 26/223 (11%)

Query: 20  LLCMLEGTIVNVPEKNSPRKL-RGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGF 78
           LL ++EG++VN+P K   RK   G  +Q+DT++ILF+ +GA++GL  +I +R  +  LGF
Sbjct: 171 LLKIVEGSLVNIPPKGG-RKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF 229

Query: 79  GAPSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFP 138
                                          KE++A L  V+  DL+ +G+IPE +GR P
Sbjct: 230 TQEK------------------------MSKKEQEAILHLVQTHDLVTYGLIPELIGRLP 265

Query: 139 ILVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGA 198
           +L    S++ E +V IL +PKNA+I+QYQ LF MD+VDL F  EA++ IA+LALE+KTGA
Sbjct: 266 VLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGA 325

Query: 199 RGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYIR 241
           RGLRAI+E   LD M+++P      V IT+D VLK   P  I 
Sbjct: 326 RGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 368
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 100.0
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 99.97
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 99.94
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.46
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 99.37
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 99.36
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.34
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 99.3
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 98.89
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 98.2
3hws_A 363 ATP-dependent CLP protease ATP-binding subunit CL; 97.66
1um8_A 376 ATP-dependent CLP protease ATP-binding subunit CL; 97.4
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 96.67
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 96.14
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 95.85
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 95.71
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 95.54
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 95.52
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 94.89
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 94.46
1ojl_A304 Transcriptional regulatory protein ZRAR; response 94.0
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 93.89
1qzm_A94 ATP-dependent protease LA; oligomerization domain, 93.59
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 92.87
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 90.19
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 88.22
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 86.36
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 85.32
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 85.13
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 84.54
3pvs_A447 Replication-associated recombination protein A; ma 83.96
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 83.82
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 83.61
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 83.29
2chg_A226 Replication factor C small subunit; DNA-binding pr 83.14
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 82.73
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 82.57
3co5_A143 Putative two-component system transcriptional RES 82.27
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 82.15
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 82.04
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 81.51
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 80.66
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 80.19
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
Probab=100.00  E-value=1.7e-33  Score=289.02  Aligned_cols=161  Identities=32%  Similarity=0.492  Sum_probs=146.1

Q ss_pred             cCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCCcc
Q psy11091          7 VAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTESA   86 (408)
Q Consensus         7 ~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~~~   86 (408)
                      .++|||+|||||+|||+|||+.+++  +         ++.+||+||||||+|||.-                    .   
T Consensus       269 ~~~D~s~egvq~aLL~~le~~~~~~--~---------~~~~d~~~ilfI~~gaf~~--------------------~---  314 (444)
T 1g41_A          269 SGADVSREGVQRDLLPLVEGSTVST--K---------HGMVKTDHILFIASGAFQV--------------------A---  314 (444)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCCEEEE--T---------TEEEECTTCEEEEEECCSS--------------------C---
T ss_pred             CCCCchHHHHHHHHHHHhccccccc--c---------cceecCCcEEEEecccccc--------------------C---
Confidence            6899999999999999999999998  2         2589999999999999952                    0   


Q ss_pred             chhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHHHH
Q psy11091         87 GRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQQY  166 (408)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLkq~  166 (408)
                                                       .|.|     ++|||+||||.+|.|++|+++++.+|+++|++++++||
T Consensus       315 ---------------------------------~~~d-----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~  356 (444)
T 1g41_A          315 ---------------------------------RPSD-----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQY  356 (444)
T ss_dssp             ---------------------------------CGGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHH
T ss_pred             ---------------------------------Chhh-----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHH
Confidence                                             0113     78999999999999999999999999999999999999


Q ss_pred             HHHhccCCceEEeCHHHHHHHHHHhhc-----cCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCccc
Q psy11091        167 QILFTMDKVDLTFSPEALQAIARLALE-----KKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSY  239 (408)
Q Consensus       167 ~~~f~~~gI~L~ft~~Al~~IA~~a~d-----~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~  239 (408)
                      +++|..+|++|+|+++|+++||+.|++     +++|||+|+++|++++.+.+|++|+.+.+.|+||+++|.+...|.+
T Consensus       357 ~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~  434 (444)
T 1g41_A          357 KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV  434 (444)
T ss_dssp             HHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred             HHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence            999999999999999999999999887     8999999999999999999999998777999999999987655543
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d1um8a_364 c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 1e-44
d1um8a_ 364 c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 3e-04
d1g41a_443 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 4e-43
d1ofha_309 c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId 9e-18
d1r6bx3315 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A 7e-11
d1qvra3315 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus 8e-09
d2fnaa2283 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo 1e-07
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score =  156 bits (395), Expect = 1e-44
 Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 24/221 (10%)

Query: 20  LLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFG 79
           LL ++EG++VN+P K   +   G  +Q+DT++ILF+ +GA++GL  +I +R  +  LGF 
Sbjct: 167 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 226

Query: 80  APSTESAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPI 139
                                     +   KE++A L  V+  DL+ +G+IPE +GR P+
Sbjct: 227 QE------------------------KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPV 262

Query: 140 LVPFHSLNQELLVRILTEPKNAMIQQYQILFTMDKVDLTFSPEALQAIARLALEKKTGAR 199
           L    S++ E +V IL +PKNA+I+QYQ LF MD+VDL F  EA++ IA+LALE+KTGAR
Sbjct: 263 LSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 322

Query: 200 GLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI 240
           GLRAI+E   LD M+++P      V IT+D VLK   P  I
Sbjct: 323 GLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 363
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 100.0
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 100.0
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 99.86
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 99.84
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 99.82
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 98.66
d1um8a_ 364 ClpX {Helicobacter pylori [TaxId: 210]} 98.56
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 97.93
d1qzma_94 ATPase domain of protease Lon (La) {Escherichia co 94.92
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 93.95
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 93.38
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 90.34
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 90.1
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 89.98
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 87.79
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 86.41
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 86.0
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 81.41
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=5.7e-45  Score=362.23  Aligned_cols=212  Identities=44%  Similarity=0.763  Sum_probs=177.1

Q ss_pred             cccCCCCChhhHhhhhhhhhcCCeEeeCCCCCCCCCCCceeEeeCCceeEEecCCCccHHHHHHhhhCCCccCCCCCCCC
Q psy11091          5 TCVAPDVETLVHMWKLLCMLEGTIVNVPEKNSPRKLRGEMVQVDTTNILFVASGAYNGLDRLISRRKNEKYLGFGAPSTE   84 (408)
Q Consensus         5 ~~~~RDVSGEGVQQaLLKiLEGt~V~Vp~~gg~Rk~~~e~i~IDTsNILFI~~GAF~GL~kiI~~R~~k~sIGFga~~~~   84 (408)
                      ...++||++++||++|||+|||+.+++++.+|++....+.+.++|+||+|+|+|||+|+++++..+....++||......
T Consensus       152 ~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  231 (364)
T d1um8a_         152 RSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMS  231 (364)
T ss_dssp             --------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCC
T ss_pred             ccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccc
Confidence            45688999999999999999999999998888444477899999999999999999999999999999999999876431


Q ss_pred             ccchhhhhhhhhhhhccchhhhhhhhhHHHHhhhccchhhhhcCCCccccccCCceeecCCCCHHHHHhhcccchHHHHH
Q psy11091         85 SAGRRAASLADLANQSAAVSAEEDNKEKDAFLKQVEARDLIDFGMIPEFVGRFPILVPFHSLNQELLVRILTEPKNAMIQ  164 (408)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~v~~eDLik~Gf~PEFlgRLd~IV~F~pLs~e~L~~ILtePk~~lLk  164 (408)
                      .                        ......++.+.++|+++++|+|||+||||++|+|++|++++|.+||++|++++++
T Consensus       232 ~------------------------~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~k  287 (364)
T d1um8a_         232 K------------------------KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIK  287 (364)
T ss_dssp             T------------------------TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred             h------------------------hhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHH
Confidence            1                        1112456788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCceEEeCHHHHHHHHHHhhccCCcchhHHHHHHHhhhhhhccCCCCCceEEEEeccccccccCcccc
Q psy11091        165 QYQILFTMDKVDLTFSPEALQAIARLALEKKTGARGLRAIMESLLLDSMYEVPGSDILMVHITEDTVLKNTAPSYI  240 (408)
Q Consensus       165 q~~~~f~~~gI~L~ft~~Al~~IA~~a~d~~~GAR~LrriIe~~L~d~l~d~pg~~~~~V~Id~~~V~~~~~p~~~  240 (408)
                      |++++|+.+||+|+||++|+++||++|+++++|||||+|+||++|+++||++|+.++++|+||+++|.++..|.++
T Consensus       288 q~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i  363 (364)
T d1um8a_         288 QYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII  363 (364)
T ss_dssp             HHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEE
T ss_pred             HHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccCCCCCCCEEEECHHHhCCCCCCeee
Confidence            9999999999999999999999999999999999999999999999999999998899999999999999999876
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure