Psyllid ID: psy11140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MSVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRGKSEV
Secondary Structure (PSIPRED)
cccccEEEEEccccEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccEEEEccccHHHHHHHHHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
msvgpkniiyngggyvkdlgssesnMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLgshnyltdsevgirgksev
Flexible Loop (DISEMBL)
msvgpkniiynggGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGShnyltdsevgirgksev
Low Complexity Region (SEG)
MSVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRGKSEV
Disordered region (IsUnstruct)
*******IIYNGGGYVKDL********QGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTD***********
Disordered Region (DISOPRED)
*SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRG****
Disordered Region (DISEMBL)
MSVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRGKSEV
Disordered Region (DISPRO)
*SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRGKSEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q2EG98	2201	Polycystic kidney disease	yes	N/A	0.764	0.030	0.367	4e-08
Q7TN88	2461	Polycystic kidney disease	no	N/A	0.808	0.029	0.333	3e-07
Q9P0L9	805	Polycystic kidney disease	no	N/A	0.662	0.073	0.423	9e-07
Q7Z442	2459	Polycystic kidney disease	yes	N/A	0.707	0.025	0.365	1e-06
P98161	4303	Polycystin-1 OS=Homo sapi	no	N/A	0.674	0.013	0.366	2e-06
O08852	4293	Polycystin-1 OS=Mus muscu	no	N/A	0.674	0.013	0.35	2e-06
Q09624	3284	Location of vulva defecti	yes	N/A	0.808	0.021	0.333	4e-06
Q4GZT3	970	Polycystin-2 OS=Bos tauru	no	N/A	0.662	0.060	0.372	8e-06
Q13563	968	Polycystin-2 OS=Homo sapi	no	N/A	0.662	0.060	0.372	2e-05
Q9U1S7	716	Polycystin-2 OS=Caenorhab	no	N/A	0.764	0.094	0.347	2e-05

>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 10   YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
            Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct: 1820 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1879

Query: 70   LGSHNYLT 77
             G   +LT
Sbjct: 1880 SGVGTFLT 1887

May function as an ion-channel regulator (By similarity). May function with PKD2L1 as heteromeric taste channels.
Mus musculus (taxid: 10090)

>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query: 6    KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
            K  +Y GGGYV  LG+   + ++ L  +  + WLD  TR + +E ++YN N+N    V+L
Sbjct: 2098 KLTLYGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTVTL 2157

Query: 66   MIERLGSHNYLT 77
             +E  G   + +
Sbjct: 2158 TLETSGLGTFFS 2169

May function as an ion-channel regulator. May function as a G-protein-coupled receptor.

Mus musculus (taxid: 10090)

>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y+GGGY  DL  S    A+ L  +    WLD  TRV+ I+ S+YN NIN    + L++E
Sbjct: 265 YSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVE 323

May function as a subunit of an ion channel and act as a transducer of calcium-mediated signaling.

Homo sapiens (taxid: 9606)

>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 6    KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
            K  +Y GGGYV  LG+      + L  +  + WLD  TR + +E ++YN N+N    V+L
Sbjct: 2095 KLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTL 2154

Query: 66   MIE 68
             +E
Sbjct: 2155 TLE 2157

May function as an ion-channel regulator. May function as a G-protein-coupled receptor.

Homo sapiens (taxid: 9606)

>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            +Y+ GGYV++LG S       L  + +H WLD R+R + +E + Y+P +    AV+L +E
Sbjct: 3813 VYDSGGYVQELGLSLEESRDRLRFLQLHNWLDNRSRAVFLELTRYSPAVGLHAAVTLRLE 3872

Involved in renal tubulogenesis. Involved in fluid-flow mechanosensation by the primary cilium in renal epithelium (By similarity). Acts as a regulator of cilium length, together with PKD2 (By similarity). The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). May be an ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions.

Homo sapiens (taxid: 9606)

>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            +Y+ GGY+++LG S       L  + +H WLD R+R + +E + Y+P +    AV+L +E
Sbjct: 3803 VYDSGGYIQELGLSLEESRARLGFLQLHNWLDSRSRAVFVELTRYSPAVGLHAAVTLRLE 3862

Involved in renal tubulogenesis (By similarity). Involved in fluid-flow mechanosensation by the primary cilium in renal epithelium. Acts as a regulator of cilium length, together with PKD2. The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling. May be an ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions.

Mus musculus (taxid: 10090)

>sp|Q09624|PKD1_CAEEL Location of vulva defective 1 OS=Caenorhabditis elegans GN=lov-1 PE=1 SV=4

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%)

Query: 10   YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
            Y+GGGY   +  +++ +    +++   +W+D+ TR ++IE S YN  IN    V L++E 
Sbjct: 2853 YSGGGYTISMSGTQAEIITLFNKLDSERWIDDHTRAVIIEFSAYNAQINYFSVVQLLVEI 2912

Query: 70   LGSHNYLTDSEV 81
              S  YL +S V
Sbjct: 2913 PKSGIYLPNSWV 2924

Required for two aspects of male mating behavior: response to hermaphrodite contact and vulva location. Acts in the same pathway as pkd-2 and atp-2 in response behavior. May be required for ciliary targeting of pkd-2.

Caenorhabditis elegans (taxid: 6239)

>sp|Q4GZT3|PKD2_BOVIN Polycystin-2 OS=Bos taurus GN=PKD2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y+G GY  DL  +    A  ++ +  + WLD  TR I I+ ++YN NIN    + L+IE
Sbjct: 388 YSGAGYYLDLSRTREETAAQVANLKKNVWLDRGTRAIFIDFTVYNANINLFCVIRLLIE 446

Functions as a calcium permeable cation channel. PKD1 and PKD2 may function through a common signaling pathway that is necessary for normal tubulogenesis.

Bos taurus (taxid: 9913)

>sp|Q13563|PKD2_HUMAN Polycystin-2 OS=Homo sapiens GN=PKD2 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y+G GY  DL  +    A  ++ +  + WLD  TR   I+ S+YN NIN    V L++E
Sbjct: 386 YSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVYNANINLFCVVRLLVE 444

Involved in fluid-flow mechanosensation by the primary cilium in renal epithelium (By similarity). PKD1 and PKD2 may function through a common signaling pathway that is necessary for normal tubulogenesis (By similarity). Acts as a regulator of cilium length, together with PKD1 (By similarity). The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). Functions as a calcium permeable cation channel.

Homo sapiens (taxid: 9606)

>sp|Q9U1S7|PKD2_CAEEL Polycystin-2 OS=Caenorhabditis elegans GN=pkd-2 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 10  YNGGGYVKDLGSSESNMAQ-GLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y GGG+V+ L  + S  AQ  ++ +  ++W+D  +R I+++ +LYN NIN    V L+ E
Sbjct: 235 YGGGGFVQRLPVAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVVKLLFE 294

Query: 69  RLGSHNYLT 77
              S   +T
Sbjct: 295 LPASGGVIT 303

Functions as a calcium permeable cation channel. Required for 2 aspects of male mating behavior: response to hermaphrodite contact and vulva location. Acts in the same pathway as lov-1 and atp-2 in response behavior.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
348554179	1608	PREDICTED: polycystic kidney disease pro	0.775	0.042	0.376	3e-07
292616290	1713	PREDICTED: im:7138475 [Danio rerio]	0.820	0.042	0.369	4e-07
224063764	2503	PREDICTED: polycystic kidney disease 1-l	0.820	0.029	0.369	6e-07
432935997	2302	PREDICTED: polycystic kidney disease pro	0.707	0.027	0.396	7e-07
47209098	1017	unnamed protein product [Tetraodon nigro	0.797	0.069	0.342	1e-06
327276513	2410	PREDICTED: polycystic kidney disease pro	0.820	0.030	0.369	1e-06
87280848	2201	polycystic kidney disease 1-like 3 varia	0.764	0.030	0.367	2e-06
87280846	2191	polycystic kidney disease 1-like 3 varia	0.764	0.031	0.367	2e-06
87280858	815	polycystic kidney disease 1-like 3 varia	0.764	0.083	0.367	2e-06
115583681	2201	polycystic kidney disease protein 1-like	0.764	0.030	0.367	2e-06

>gi|348554179|ref|XP_003462903.1| PREDICTED: polycystic kidney disease protein 1-like 2-like [Cavia porcellus]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            +Y GGGYV  LG+   + ++ L  +  H WLD RTR + +E ++YN N+N    V+L +E
Sbjct: 1247 LYPGGGYVVPLGTERQSASRVLQYLFNHAWLDTRTRAVFVEFTVYNANVNLFCVVTLTLE 1306

Query: 69   RLGSHNYLT 77
              G   + T
Sbjct: 1307 TSGLGTFST 1315

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|292616290|ref|XP_002662959.1| PREDICTED: im:7138475 [Danio rerio]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            +Y GGG+V DLG  + N ++ L  +  + WLD  TR + +E ++YN N+N    V+L+ E
Sbjct: 1364 LYKGGGFVVDLGPDQKNASRLLQYLFDNTWLDVYTRAVFVEFTVYNANVNLFCIVTLIFE 1423

Query: 69   RLGSHNYLTDSEV 81
              G   +   SEV
Sbjct: 1424 TTGVGTFQYRSEV 1436

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224063764|ref|XP_002194772.1| PREDICTED: polycystic kidney disease 1-like 2 [Taeniopygia guttata]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            IY+GGGYV  LG+   N ++ L  +  + WLD  TR + +E ++YN N+N    +SLM E
Sbjct: 2154 IYSGGGYVVHLGTDPKNASRILQYLFNNVWLDTFTRAVFVEFTVYNANVNLFCIISLMFE 2213

Query: 69   RLGSHNYLTDSEV 81
                  + T +E+
Sbjct: 2214 SNALGAFFTSAEL 2226

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432935997|ref|XP_004082070.1| PREDICTED: polycystic kidney disease protein 1-like 2-like [Oryzias latipes]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 6    KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
            K  +Y GGG+V +LG   SN +  L  +  +KWLD  TR I +E ++YN N+N    ++L
Sbjct: 1946 KTALYRGGGFVVELGPDLSNASSTLEYLFENKWLDLYTRAIFVEFTVYNANVNLFCIITL 2005

Query: 66   MIE 68
            ++E
Sbjct: 2006 LME 2008

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47209098|emb|CAF91610.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 8   IIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMI 67
           ++Y GGG+  +LG    N ++ L  +  +KWLD  TR I +E ++YN N+N    V+L++
Sbjct: 840 LLYGGGGFAAELGPDLQNASRTLEYLFSNKWLDGYTRTIFVEFTVYNANVNLFCIVTLLL 899

Query: 68  ER--LGSHNYLTD 78
           E   +G+  + +D
Sbjct: 900 ETAAVGAFQFTSD 912

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327276513|ref|XP_003223014.1| PREDICTED: polycystic kidney disease protein 1-like 2-like [Anolis carolinensis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 9    IYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
            +Y GGGYV  LG+   N ++ L  +  + WLD  TR + +E ++YN N+N    VSLM E
Sbjct: 2061 VYRGGGYVIHLGTDSQNASRILQYLFDNTWLDIFTRAVFVEFTVYNANVNLFCIVSLMFE 2120

Query: 69   RLGSHNYLTDSEV 81
                  + T +E+
Sbjct: 2121 TNALGAFFTRAEL 2133

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|87280848|gb|ABD36563.1| polycystic kidney disease 1-like 3 variant 1a [Mus musculus]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 10   YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
            Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct: 1820 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1879

Query: 70   LGSHNYLT 77
             G   +LT
Sbjct: 1880 SGVGTFLT 1887

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|87280846|gb|ABD36562.1| polycystic kidney disease 1-like 3 variant 1b [Mus musculus]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 10   YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
            Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct: 1810 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1869

Query: 70   LGSHNYLT 77
             G   +LT
Sbjct: 1870 SGVGTFLT 1877

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|87280858|gb|ABD36568.1| polycystic kidney disease 1-like 3 variant 3 [Mus musculus]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
           Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct: 416 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 475

Query: 70  LGSHNYLT 77
            G   +LT
Sbjct: 476 SGVGTFLT 483

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|115583681|ref|NP_001034789.2| polycystic kidney disease protein 1-like 3 isoform a precursor [Mus musculus] gi|341941256|sp|Q2EG98.2|PK1L3_MOUSE RecName: Full=Polycystic kidney disease protein 1-like 3; AltName: Full=PC1-like 3 protein; AltName: Full=Polycystin-1L3; Flags: Precursor

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 10   YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
            Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct: 1820 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1879

Query: 70   LGSHNYLT 77
             G   +LT
Sbjct: 1880 SGVGTFLT 1887

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
UNIPROTKB|E1C6F6	2460	E1C6F6 "Uncharacterized protei	0.853	0.030	0.381	7.3e-08
MGI|MGI:2664670	2201	Pkd1l3 "polycystic kidney dise	0.808	0.032	0.347	2.2e-07
UNIPROTKB|F1N839	4275	Gga.19764 "Uncharacterized pro	0.752	0.015	0.376	5.7e-07
UNIPROTKB|F1N838	4277	Gga.19764 "Uncharacterized pro	0.752	0.015	0.376	5.7e-07
UNIPROTKB|Q9P0L9	805	PKD2L1 "Polycystic kidney dise	0.662	0.073	0.423	8e-07
UNIPROTKB|E2RIJ0	806	PKD2L1 "Uncharacterized protei	0.662	0.073	0.423	8e-07
UNIPROTKB|F1MLH0	2458	Bt.78082 "Uncharacterized prot	0.707	0.025	0.365	8.5e-07
MGI|MGI:2664668	2461	Pkd1l2 "polycystic kidney dise	0.741	0.026	0.363	8.5e-07
ZFIN|ZDB-GENE-040827-4	904	pkd2 "polycystic kidney diseas	0.662	0.065	0.372	1.2e-06
RGD|1306261	763	Pkd2l1 "polycystic kidney dise	0.662	0.077	0.423	1.6e-06

UNIPROTKB|E1C6F6 E1C6F6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 29/76 (38%), Positives = 42/76 (55%)

Query:     6 KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
             K  IY GGGYV  LG+   N ++ L  +  + WLD  TR + +E ++YN N+N    VSL
Sbjct:  2114 KLAIYGGGGYVIHLGTDPQNASRILQYLFNNVWLDTFTRAVFVEFTVYNANVNLFCIVSL 2173

Query:    66 MIERLGSHNYLTDSEV 81
             M E      + T +E+
Sbjct:  2174 MFETNALGAFFTSAEL 2189

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2664670 Pkd1l3 "polycystic kidney disease 1 like 3" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/72 (34%), Positives = 44/72 (61%)

Query:    10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIER 69
             Y+GGGYV  LG + S   + L  +   +WLD  T+ + +E +++N N+N + AV+L++E 
Sbjct:  1820 YSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILES 1879

Query:    70 LGSHNYLTDSEV 81
              G   +LT  ++
Sbjct:  1880 SGVGTFLTSLQL 1891

GO:0001581 "detection of chemical stimulus involved in sensory perception of sour taste" evidence=IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005261 "cation channel activity" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IDA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0033040 "sour taste receptor activity" evidence=IDA

GO:0071468 "cellular response to acidity" evidence=IDA

UNIPROTKB|F1N839 Gga.19764 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 26/69 (37%), Positives = 45/69 (65%)

Query:    10 YNGGGYVKDLGSS-ESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y+ GGY+++LG+S E   AQ L+ +  H W+D  +RV+ +E   YNP+++   A++L +E
Sbjct:  3766 YDSGGYIQELGTSLEEGRAQ-LNYLQQHTWIDNMSRVVFVELMQYNPSVDLHAAITLQLE 3824

Query:    69 RLGSHNYLT 77
              LG+   +T
Sbjct:  3825 FLGAGQAVT 3833

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N838 Gga.19764 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 26/69 (37%), Positives = 45/69 (65%)

Query:    10 YNGGGYVKDLGSS-ESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y+ GGY+++LG+S E   AQ L+ +  H W+D  +RV+ +E   YNP+++   A++L +E
Sbjct:  3769 YDSGGYIQELGTSLEEGRAQ-LNYLQQHTWIDNMSRVVFVELMQYNPSVDLHAAITLQLE 3827

Query:    69 RLGSHNYLT 77
              LG+   +T
Sbjct:  3828 FLGAGQAVT 3836

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001502 "cartilage condensation" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0002133 "polycystin complex" evidence=IEA

GO:0005261 "cation channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007259 "JAK-STAT cascade" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0032092 "positive regulation of protein binding" evidence=IEA

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=IEA

GO:0050982 "detection of mechanical stimulus" evidence=IEA

GO:0060674 "placenta blood vessel development" evidence=IEA

UNIPROTKB|Q9P0L9 PKD2L1 "Polycystic kidney disease 2-like 1 protein" [Homo sapiens (taxid:9606)]

 Score = 125 (49.1 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query:    10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y+GGGY  DL  S    A+ L  +    WLD  TRV+ I+ S+YN NIN    + L++E
Sbjct:   265 YSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVE 323

GO:0008092 "cytoskeletal protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

GO:0005272 "sodium channel activity" evidence=IDA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0001581 "detection of chemical stimulus involved in sensory perception of sour taste" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0033040 "sour taste receptor activity" evidence=ISS

GO:0005227 "calcium activated cation channel activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0071468 "cellular response to acidity" evidence=ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IMP

GO:0005261 "cation channel activity" evidence=IDA

GO:0051393 "alpha-actinin binding" evidence=IPI

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

UNIPROTKB|E2RIJ0 PKD2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query:    10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y+GGGY  DL  S    A+ L  +    WLD  TRV+ I+ S+YN NIN    + L++E
Sbjct:   265 YSGGGYYLDLPGSRQASAEALQDLQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVE 323

GO:0071468 "cellular response to acidity" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033040 "sour taste receptor activity" evidence=IEA

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

UNIPROTKB|F1MLH0 Bt.78082 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query:     6 KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
             K  +Y GGGYV  LG+   + ++ L  +  + WLD  TR + +E ++YN N+N    V+L
Sbjct:  2096 KLTVYRGGGYVVSLGTDRQSASRTLQYLFDNTWLDSLTRAVFVEFTVYNANVNLFCIVTL 2155

Query:    66 MIE 68
              +E
Sbjct:  2156 TLE 2158

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:2664668 Pkd1l2 "polycystic kidney disease 1 like 2" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query:     6 KNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSL 65
             K  +Y GGGYV  LG+   + ++ L  +  + WLD  TR + +E ++YN N+N    V+L
Sbjct:  2098 KLTLYGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTVTL 2157

Query:    66 MIERLG 71
              +E  G
Sbjct:  2158 TLETSG 2163

GO:0001965 "G-protein alpha-subunit binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

ZFIN|ZDB-GENE-040827-4 pkd2 "polycystic kidney disease 2" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query:    10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y GGGY +DL  +    A  L ++  + WLD  TR + ++ S+YN N+N    V L++E
Sbjct:   322 YGGGGYYQDLSRTREKSANQLQELKNNLWLDRGTRAVFLDFSIYNGNVNLFCIVRLLVE 380

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0048793 "pronephros development" evidence=IGI;IMP

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0072019 "proximal convoluted tubule development" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0072114 "pronephros morphogenesis" evidence=IMP

GO:0032965 "regulation of collagen biosynthetic process" evidence=IMP

RGD|1306261 Pkd2l1 "polycystic kidney disease 2-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query:    10 YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
             Y+GGGY  DL  S    A+ L  +    WLD  TRV+ I+ S+YN NIN    + L++E
Sbjct:   265 YSGGGYYLDLPGSRQASAEALQGLQEGLWLDRGTRVVFIDFSVYNANINLFCILRLVVE 323

GO:0001581 "detection of chemical stimulus involved in sensory perception of sour taste" evidence=ISO

GO:0005227 "calcium activated cation channel activity" evidence=ISO

GO:0005261 "cation channel activity" evidence=ISO

GO:0005272 "sodium channel activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006812 "cation transport" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0015269 "calcium-activated potassium channel activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051393 "alpha-actinin binding" evidence=ISO

GO:0071468 "cellular response to acidity" evidence=ISO

GO:0071805 "potassium ion transmembrane transport" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0008324 "cation transmembrane transporter activity" evidence=ISO

GO:0033040 "sour taste receptor activity" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
pfam08016	423	pfam08016, PKD_channel, Polycystin cation channel	5e-14

>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 10  YNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIE 68
           Y  GGYV  L  S     + L+ +  H WLD RTR + +E +LYN N N    V+L++E
Sbjct: 121 YPSGGYVVLLPLSREESLKRLAYLQDHNWLDRRTRAVFVEFTLYNANTNLFCVVTLLVE 179

This family contains the cation channel region of PKD1 and PKD2 proteins. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	99.97
KOG3599|consensus	798		99.94
PLN03223	1634	Polycystin cation channel protein; Provisional	99.91
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	87.01
PF05848	152	CtsR: Firmicute transcriptional repressor of class	81.3

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=99.97  E-value=2.9e-30  Score=199.80  Aligned_cols=84  Identities=29%  Similarity=0.483  Sum_probs=82.0

Q ss_pred             cccceeeeeCCCCeEEEcCCCHHHHHHHHHhhhhCCcccCCccEEEEEEeeeeCCCCeEEEEEEEEEEcCccceeeeeEE
Q psy11140          2 SVGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEV   81 (89)
Q Consensus         2 ~~~G~~~~Y~ggGY~~~L~~~~~~a~~~l~~L~~~~WiD~~TRav~vEftlYN~n~nLF~~vtll~E~~~tG~~~~s~~v   81 (89)
                      ++.|++++|+||||+++|++++++|.++|++||+++|||++||||++||++||||+||||++++++|+||+|++.|+.+|
T Consensus       115 ~~~G~~~~Y~~gGY~~~L~~~~~~a~~~l~~L~~~~WiD~~Trav~vef~~YN~~~nlf~~v~l~~E~~~~G~~~~s~~i  194 (425)
T PF08016_consen  115 PYWGQFGTYGGGGYVVDLGRNKDEARSILQYLQQNNWIDRSTRAVFVEFTLYNPNTNLFSVVTLLFEFPPTGGVIPSASI  194 (425)
T ss_pred             ceeeeeeeeCCCcEEEECCCCHHHHHHHHHHHHhCcCcccCCceEEEEEEEEcCCCCeeEEEEEEEEEcCCCceeeecce
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEee
Q psy11140         82 GIRG   85 (89)
Q Consensus        82 ~~~~   85 (89)
                      +++.
T Consensus       195 ~~~~  198 (425)
T PF08016_consen  195 QTFR  198 (425)
T ss_pred             eEEE
Confidence            9874

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=99.94  E-value=2.2e-27  Score=197.44  Aligned_cols=83  Identities=29%  Similarity=0.403  Sum_probs=80.6

Q ss_pred             ccceeeeeCCCCeEEEcCCCHHHHHHHHHhhhhCCcccCCccEEEEEEeeeeCCCCeEEEEEEEEEEcCccceeeeeEEE
Q psy11140          3 VGPKNIIYNGGGYVKDLGSSESNMAQGLSQMIIHKWLDERTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVG   82 (89)
Q Consensus         3 ~~G~~~~Y~ggGY~~~L~~~~~~a~~~l~~L~~~~WiD~~TRav~vEftlYN~n~nLF~~vtll~E~~~tG~~~~s~~v~   82 (89)
                      ..|.+++|+||||+++|+.+++++...+++|++++|||++||||||||++||||+||||+|+|++|+||+|+++|+.+++
T Consensus       371 ~~g~l~~Y~~gGY~~~l~~sr~es~~~i~~L~~~~WlD~~TrAvfidftlYNa~inlF~~v~L~vE~p~~G~~~ps~~l~  450 (798)
T KOG3599|consen  371 HWGLLASYGGGGYVVLLSLSRTESLKAISYLRENNWLDRGTRAVFIDFTLYNADINLFCVVTLRVEFPPTGGVLPSLQLE  450 (798)
T ss_pred             cccceeEecCCCEEEEecCchHhHHHHHHHHHHhccccCCCcEEEEeccccCCCCCeeEEEEEEEEecCcccccccceEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eee
Q psy11140         83 IRG   85 (89)
Q Consensus        83 ~~~   85 (89)
                      .+-
T Consensus       451 S~~  453 (798)
T KOG3599|consen  451 SFK  453 (798)
T ss_pred             EEe
Confidence            873

>PLN03223 Polycystin cation channel protein; Provisional

Probab=99.91  E-value=3.6e-24  Score=183.88  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=73.0

Q ss_pred             eCCC-CeEEEcCCCHHHHHHHHHhhhhCCcccC-CccEEEEEEeeeeCCCCeEEEEEEEEEEcCccceeeeeEEEEee
Q psy11140         10 YNGG-GYVKDLGSSESNMAQGLSQMIIHKWLDE-RTRVILIECSLYNPNINAIIAVSLMIERLGSHNYLTDSEVGIRG   85 (89)
Q Consensus        10 Y~gg-GY~~~L~~~~~~a~~~l~~L~~~~WiD~-~TRav~vEftlYN~n~nLF~~vtll~E~~~tG~~~~s~~v~~~~   85 (89)
                      |++| ||+++|+.++++|.++|++|+++.|||+ +|||||+||++||||+||||+|++++|||++|++.|+++|+++-
T Consensus      1086 y~DGfgyv~DL~lSa~eA~~~L~~LKdnlWIDr~~TRAVFVEFTVYNANVNLFSvVtLLfEF~~TGGV~~s~~IqTfR 1163 (1634)
T PLN03223       1086 YADGFPYFFDINLSAAEAQTWLDYMIYGLMIDDVKTRKVTAQVVVYNAELGYFGNVMVFFEFTDGGKIEVTHRLNTIR 1163 (1634)
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHhCCCcccccceeEEEEEEEEcCCCCeEEEEEEEEEEcCCCceeeeeeEEEEE
Confidence            5544 9999999999999999999999999999 99999999999999999999999999999999999999999874

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=87.01  E-value=1.2  Score=23.70  Aligned_cols=29  Identities=14%  Similarity=0.257  Sum_probs=23.9

Q ss_pred             cCCCHHHHHHHHHhhhhCCcccCCccEEE
Q psy11140         19 LGSSESNMAQGLSQMIIHKWLDERTRVIL   47 (89)
Q Consensus        19 L~~~~~~a~~~l~~L~~~~WiD~~TRav~   47 (89)
                      ++.++..+...|+.|.+.+||+...+.+.
T Consensus        18 l~~s~~tv~~~l~~L~~~g~l~~~~~~~~   46 (48)
T smart00419       18 LGLTRETVSRTLKRLEKEGLISREGGRIV   46 (48)
T ss_pred             HCCCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            46678899999999999999987766543

>PF05848 CtsR: Firmicute transcriptional repressor of class III stress genes (CtsR); InterPro: IPR008463 This family consists of several Firmicute transcriptional repressor of class III stress gene (CtsR) proteins

Probab=81.30  E-value=2.2  Score=30.05  Aligned_cols=22  Identities=14%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHhhhhCCcccCCc
Q psy11140         22 SESNMAQGLSQMIIHKWLDERT   43 (89)
Q Consensus        22 ~~~~a~~~l~~L~~~~WiD~~T   43 (89)
                      +..+|...++.|.++++|++.-
T Consensus        94 s~~~a~~ii~~L~e~~~it~RE  115 (152)
T PF05848_consen   94 SQQDAEDIIQRLLEEGLITERE  115 (152)
T ss_dssp             -HHHHHHHHHHHHHTTSS-HHH
T ss_pred             CHHHHHHHHHHHHHCCCCCHHH
Confidence            4688999999999999998643

CtsR of Listeria monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon [].; PDB: 3H0D_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	81.88

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.6  Score=25.36  Aligned_cols=29  Identities=14%  Similarity=0.280  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHHHhhhhCCcccCCccEEEE
Q psy11140         20 GSSESNMAQGLSQMIIHKWLDERTRVILI   48 (89)
Q Consensus        20 ~~~~~~a~~~l~~L~~~~WiD~~TRav~v   48 (89)
                      |.+++..-..|+.|++.+||+..-+-+.|
T Consensus        40 G~sRetvsr~L~~l~~~glI~~~~~~I~I   68 (69)
T d1i5za1          40 GCSRETVGRILKMLEDQNLISAHGKTIVV   68 (69)
T ss_dssp             TCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence            56778888999999999999988887765