Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 103
pfam07289
339
pfam07289, DUF1448, Protein of unknown function (D
1e-18
smart00683 55
smart00683, DM16, Repeats in sea squirt COS41
4e-09
>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448)
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Score = 78.2 bits (193), Expect = 1e-18
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 7 GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
GAI++ +L +LP E + S+ GVWNLSSDQGNLG F TNIR+V
Sbjct: 141 GAIIQDGQLNLLPDEQVISRVNGVWNLSSDQGNLGTFFVTNIRLV 185
This family consists of several eukaryotic proteins of around 375 residues in length. The function of this family is unknown. It appears that this family includes a divergent GRAM domain. Length = 339
>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41
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Score = 48.0 bits (115), Expect = 4e-09
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 21 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
E + ++ GV + + G+LGVF TN+R+V
Sbjct: 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLV 31
4, worm R01H10.6, fly CG1126 etc. Length = 55
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
103
PF07289 339
DUF1448: Protein of unknown function (DUF1448); In
100.0
smart00683 55
DM16 Repeats in sea squirt COS41.4, worm R01H10.6,
99.82
PF07289
339
DUF1448: Protein of unknown function (DUF1448); In
99.57
PF14470 96
bPH_3: Bacterial PH domain
94.21
PF08000 124
bPH_1: Bacterial PH domain; InterPro: IPR012544 Th
92.72
PF11605 89
Vps36_ESCRT-II: Vacuolar protein sorting protein 3
92.6
PF03517 135
Voldacs: Regulator of volume decrease after cellul
91.66
KOG3294|consensus
261
90.1
smart00568 61
GRAM domain in glucosyltransferases, myotubularins
88.16
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)
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Probab=100.00 E-value=2.4e-45 Score=300.13 Aligned_cols=96 Identities=46% Similarity=0.841 Sum_probs=93.6
Q ss_pred cchhceeecCcccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCccee------------eeeecc
Q psy11196 4 YKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD------------IRTYYF 71 (103)
Q Consensus 4 ~lR~aii~~~~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN------------ir~SKF 71 (103)
.||||||++|+|+|||+|+||++++||||||+|||++|+|++||||+| |||+ +|+.|| ||+|||
T Consensus 138 klR~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiV---W~A~-~ne~fNVSiPylqi~~i~ir~SKf 213 (339)
T PF07289_consen 138 KLRGAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIV---WFAD-MNESFNVSIPYLQIKSIRIRDSKF 213 (339)
T ss_pred hhheeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEE---EEcc-CCccccccchHhhheeeeeecccc
Confidence 479999999999999999999999999999999999999999999999 9999 999999 799999
Q ss_pred cceE-----------EEEEecChhhHHHHHHHHHHHhhhhhhC
Q psy11196 72 GEVM-----------DLGFDIRYESFENEVYHELFDSHHVFRR 103 (103)
Q Consensus 72 G~al-----------vLGFridP~e~l~~~~ke~~~L~~~~~~ 103 (103)
|+|| +|||||||+|||+++||||++||++|+.
T Consensus 214 G~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~sLh~vy~~ 256 (339)
T PF07289_consen 214 GPALVIETSESSGGYVLGFRVDPEERLQELFKEIQSLHKVYSA 256 (339)
T ss_pred ceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999973
It consists of eukaryotic proteins of around 375 residues in length.
>smart00683 DM16 Repeats in sea squirt COS41
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Probab=99.82 E-value=1.3e-20 Score=120.89 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=41.8
Q ss_pred ceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCcceeee
Q psy11196 21 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIR 67 (103)
Q Consensus 21 E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNir 67 (103)
|+++++++||||+|||||++|+|+|||||+| |||+ ++++||++
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRii---W~s~-~~~~~NlS 43 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLV---WHSD-TNPRFNIS 43 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEE---EEeC-CCCceEEE
Confidence 8999999999999999999999999999999 9999 99999964
4, worm R01H10.6, fly CG1126 etc.
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)
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Probab=99.57 E-value=7e-15 Score=121.18 Aligned_cols=87 Identities=17% Similarity=0.349 Sum_probs=70.4
Q ss_pred cCcccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCcceee------------e--ee-ccc--ce
Q psy11196 12 RKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDI------------R--TY-YFG--EV 74 (103)
Q Consensus 12 ~~~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fNi------------r--~S-KFG--~a 74 (103)
.+.|+|+|||.+++++++|+|+|||+|+.|+++|||+|++ |||. .++++|+ | .| ..| +|
T Consensus 14 ~~~l~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~i---W~s~-~~~r~NlSIG~~~i~~i~~~~~~sklrg~tea 89 (339)
T PF07289_consen 14 ASQLKLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLI---WHSL-KRPRINLSIGYNCITNISTKTVNSKLRGNTEA 89 (339)
T ss_pred hhhcccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeE---Eecc-CCCceeEEeeceeEEEEEEEEeeccccCceeE
Confidence 4578999999999999999999999999999999999999 9999 9999992 1 22 234 23
Q ss_pred E-----------EEEEe-cChhhHHHHHHHHHHHhhhhhh
Q psy11196 75 M-----------DLGFD-IRYESFENEVYHELFDSHHVFR 102 (103)
Q Consensus 75 l-----------vLGFr-idP~e~l~~~~ke~~~L~~~~~ 102 (103)
| .+=|. +.|...-+.+|..+++.|++|.
T Consensus 90 L~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 90 LYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred EEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 3 55565 4444433689999999999985
It consists of eukaryotic proteins of around 375 residues in length.
>PF14470 bPH_3: Bacterial PH domain
Back Show alignment and domain information
Probab=94.21 E-value=0.091 Score=33.67 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.9
Q ss_pred ccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 17 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 17 llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
|.|+|+|.....|..+.. .....|.+++||=|++ -++.
T Consensus 1 L~~~E~I~~~~~~~~~~~-~~~~~g~l~~TnkRli---f~~~ 38 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF-FTSFPGVLVLTNKRLI---FYSK 38 (96)
T ss_pred CcCCCEEEEEEEEEEeec-ccCceeEEEEeCCEEE---EEEc
Confidence 579999999999998876 6667999999999999 6655
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins
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Probab=92.72 E-value=0.1 Score=37.82 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.9
Q ss_pred ccccCCceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 15 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 15 L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
--|+|||+|+..++.+ ...+++||-|+|
T Consensus 25 ~~L~~gE~I~~ayk~i---------RD~~vFTnkRlI 52 (124)
T PF08000_consen 25 PLLLDGEEIEAAYKLI---------RDEIVFTNKRLI 52 (124)
T ss_dssp GGSSTT--EEEEEEES---------SEEEEEESSEEE
T ss_pred HhcCCCCeeeeeehhh---------ceeEEEecChhe
Confidence 3578999999999998 567999999999
; PDB: 3DCX_E 3HSA_C 3B77_D.
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes
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Probab=92.60 E-value=0.15 Score=34.86 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred cCcccccCCceeeeeecceeeccCC----CCceeeEEEEeeeEEeecccccccCc
Q psy11196 12 RKELKMLPREHIYSQYQGVWNLSSD----QGNLGVFMATNIRVVCTYYFGEVMDL 62 (103)
Q Consensus 12 ~~~L~llp~E~i~~~~~gV~nls~d----qG~lG~f~vTNiRiV~~~W~a~~~~~ 62 (103)
-++-.|.|+|.++-+-+||-=-.|+ +=.-|++++|+-|++ |... .++
T Consensus 5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRli---w~d~-~~~ 55 (89)
T PF11605_consen 5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLI---WVDD-SDP 55 (89)
T ss_dssp CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEE---EEES-SGH
T ss_pred ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEE---EEcC-CCC
Confidence 4567789999999999998543344 444899999999999 9866 444
The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation
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Probab=91.66 E-value=0.37 Score=34.50 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=17.9
Q ss_pred eeEEEEeeeEEeecccc-cccCccee
Q psy11196 41 GVFMATNIRVVCTYYFG-EVMDLGFD 65 (103)
Q Consensus 41 G~f~vTNiRiV~~~W~a-~~~~~~fN 65 (103)
|+|+|||=||+ |++ .-.+.+|.
T Consensus 1 g~L~Vt~~~l~---w~~~~~~~~G~~ 23 (135)
T PF03517_consen 1 GTLYVTESRLI---WFSNEDSSKGFS 23 (135)
T ss_dssp EEEEEETTEEE---EEET--TTEEEE
T ss_pred CEEEEecCEEE---EECCCcCCccee
Confidence 89999999999 999 33677777
Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
>KOG3294|consensus
Back Show alignment and domain information
Probab=90.10 E-value=0.52 Score=38.60 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=32.9
Q ss_pred ecCc-ccccCCceeeeeecceeec---------cCCCCceeeEEEEeeeEEeeccccc
Q psy11196 11 RRKE-LKMLPREHIYSQYQGVWNL---------SSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 11 ~~~~-L~llp~E~i~~~~~gV~nl---------s~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
.++. ..+..+|-|+...+||+=+ .+..-..|++.+||.||| .-+.
T Consensus 9 ~~G~gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiI---Fis~ 63 (261)
T KOG3294|consen 9 PNGRGVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRII---FISS 63 (261)
T ss_pred CCCceeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEE---EecC
Confidence 3454 6778888888888888622 222234899999999999 7776
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins
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Probab=88.16 E-value=1.1 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.9
Q ss_pred ccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 17 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 17 llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
|.++|.+++.+.--+. ++.-.-|++++||=|+. .+|.
T Consensus 2 l~~~E~l~~~~~C~l~--~~~~~~G~lyiT~~~l~---F~S~ 38 (61)
T smart00568 2 LPEEEKLIADYSCYLS--RDGPVQGRLYISNYRLC---FRSD 38 (61)
T ss_pred cCCCcEEEEEEEeEEC--CCccccEEEEEECCEEE---EEcc
Confidence 6789999999875555 55667999999999999 8886
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability
Query 103
1zsq_A
528
Myotubularin-related protein 2; protein-phospholip
95.73
1lw3_A
657
Myotubularin-related protein 2; protein-phosphate
95.41
2cay_A 145
VPS36 PH domain, vacuolar protein sorting protein
93.54
3hsa_A 126
Pleckstrin homology domain; YP_926556.1, structura
92.29
2hth_B 140
Vacuolar protein sorting protein 36; GLUE domain,
88.79
1zyi_A 171
Methylosome subunit picln; PH domain, cell volume
85.28
3b77_A 193
Uncharacterized protein; pleckstrin-homology domai
82.86
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
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Probab=95.73 E-value=0.0068 Score=51.49 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=36.0
Q ss_pred ecCcccccCCceeeeeecceeeccCC-CCceeeEEEEeeeEEeeccccc
Q psy11196 11 RRKELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 11 ~~~~L~llp~E~i~~~~~gV~nls~d-qG~lG~f~vTNiRiV~~~W~a~ 58 (103)
+...+.+||||.|....++|.-+... ....|++.+||-|++ +.+.
T Consensus 3 ~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLi---F~~~ 48 (528)
T 1zsq_A 3 SMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSM 48 (528)
T ss_dssp -CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEES
T ss_pred CCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEE---EEcc
Confidence 34578899999999999999866433 245899999999999 7765
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Back Show alignment and structure
Probab=95.41 E-value=0.066 Score=46.82 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.8
Q ss_pred CcccccCCceeeeeecceeeccCCCC-ceeeEEEEeeeEEeeccccc
Q psy11196 13 KELKMLPREHIYSQYQGVWNLSSDQG-NLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 13 ~~L~llp~E~i~~~~~gV~nls~dqG-~lG~f~vTNiRiV~~~W~a~ 58 (103)
..+.+||||.++...++|--+....| ..|++++||-|++ +-+.
T Consensus 77 ~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLi---F~~~ 120 (657)
T 1lw3_A 77 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSM 120 (657)
T ss_dssp CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEES
T ss_pred CCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEE---EEec
Confidence 36889999999999999975543333 5799999999999 7764
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Back Show alignment and structure
Probab=93.54 E-value=0.051 Score=38.91 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=38.6
Q ss_pred eecCcccccCCceeeeeecceeeccC----CCCceeeEEEEeeeEEeecccccccCcc
Q psy11196 10 VRRKELKMLPREHIYSQYQGVWNLSS----DQGNLGVFMATNIRVVCTYYFGEVMDLG 63 (103)
Q Consensus 10 i~~~~L~llp~E~i~~~~~gV~nls~----dqG~lG~f~vTNiRiV~~~W~a~~~~~~ 63 (103)
-..++..|+|+|.++-..++|-=--| .+-.-|++++||-||| |-.. .++.
T Consensus 18 t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRII---yv~~-~~~~ 71 (145)
T 2cay_A 18 TSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRII---YIDD-AKPT 71 (145)
T ss_dssp CTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEE---EEES-SCHH
T ss_pred ccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEE---EecC-CCCc
Confidence 34677889999999999998853333 3445899999999999 9766 5554
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Back Show alignment and structure
Probab=92.29 E-value=0.085 Score=37.63 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred cccccCCceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 14 ELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 14 ~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
+--|+|||+|+..+..+ ...+++||-|+|
T Consensus 25 ~~~L~~gE~I~~ayk~i---------RD~~iFTnkRLI 53 (126)
T 3hsa_A 25 SPILGDNEELQLAYXMV---------RDLFVFTSXRLI 53 (126)
T ss_dssp GGGSCTTCCEEEEEECS---------SEEEEEESSEEE
T ss_pred HHhcCCCCEEEEEehhc---------CceEEEccchhe
Confidence 34689999999999988 567999999999
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Back Show alignment and structure
Probab=88.79 E-value=0.48 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.7
Q ss_pred CcccccCCceeeeeecceeeccCC---CCceeeEEEEeeeEEeeccccc
Q psy11196 13 KELKMLPREHIYSQYQGVWNLSSD---QGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 13 ~~L~llp~E~i~~~~~gV~nls~d---qG~lG~f~vTNiRiV~~~W~a~ 58 (103)
++-.|.|+|.++-..++|-=--|| +=.-|++++|+-||| |...
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli---~~d~ 54 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLI---WRDQ 54 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEE---EEET
T ss_pred CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEE---EecC
Confidence 556689999999999988533333 224899999999999 9765
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Back Show alignment and structure
Probab=85.28 E-value=0.64 Score=34.33 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=26.0
Q ss_pred CC--ceeeeeecceeeccC--CCCceeeEEEEeeeEEeecccccccCccee
Q psy11196 19 PR--EHIYSQYQGVWNLSS--DQGNLGVFMATNIRVVCTYYFGEVMDLGFD 65 (103)
Q Consensus 19 p~--E~i~~~~~gV~nls~--dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN 65 (103)
|. |.|.-+-++|.=.=+ +.| .|+|+||+=|++ |++. ...+|.
T Consensus 19 p~~~E~v~~~~~~v~~vl~~~~~g-~GtLyVt~~~l~---W~~~-~~~G~s 64 (171)
T 1zyi_A 19 PGSAEGLRQQQPETEAVLNGKGLG-TGTLYIAESRLS---WLDG-SGLGFS 64 (171)
T ss_dssp --------CBCSSEEEEBTTBCCC-EEEEEEETTEEE---EEET-TTEEEE
T ss_pred CCCccceEEEcCCEEEEECCCccC-ceEEEEEcCEEE---EEcC-CCcEEE
Confidence 56 666655554432221 223 799999999999 9999 888888
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Back Show alignment and structure
Probab=82.86 E-value=0.73 Score=35.12 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.5
Q ss_pred ccccC--CceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 15 LKMLP--REHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 15 L~llp--~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
=-|+| ||+|+..+..+-| .+++||-|+|
T Consensus 20 ~~Ll~EdgE~I~~ayk~irD---------~~iFTNkRLI 49 (193)
T 3b77_A 20 DYVLHEDGEKIYFLIKSKTD---------EYCFTNLALV 49 (193)
T ss_dssp GGSCGGGTCCEEEEEECSSE---------EEEEESSEEE
T ss_pred hhccCCCCCEEeeeeeecce---------EEEEecchhh
Confidence 35789 9999999998855 7999999999
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 103
d1zsqa1 125
Myotubularin-related protein 2, N-terminal domain
97.46
d2caya1 130
Vacuolar protein sorting protein 36, VPS36 {Baker'
94.77
d2hthb1 129
Vacuolar protein sorting protein 36, VPS36 {Human
93.38
d3dcxa1 116
Uncharacterized protein Shew0819 {Shewanella loihi
91.26
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00022 Score=47.97 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=53.1
Q ss_pred cccccCCceeeeeecceeeccCCCC-ceeeEEEEeeeEEeecccccccCccee-------ee-e---------e--cccc
Q psy11196 14 ELKMLPREHIYSQYQGVWNLSSDQG-NLGVFMATNIRVVCTYYFGEVMDLGFD-------IR-T---------Y--YFGE 73 (103)
Q Consensus 14 ~L~llp~E~i~~~~~gV~nls~dqG-~lG~f~vTNiRiV~~~W~a~~~~~~fN-------ir-~---------S--KFG~ 73 (103)
+..|||||.++...++|-=...-.| --|++.+||-|++ --+...++.+. |. - + .+|.
T Consensus 2 ~~~llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrli---F~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L 78 (125)
T d1zsqa1 2 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGL 78 (125)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEE
T ss_pred CCCcCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEE---EEcCCCCccEEEEeccceeeeeeecccccccCCccccE
Confidence 4579999999999999955543333 4699999999999 65542343332 11 1 1 1233
Q ss_pred eE------EEEEecChh-hHHHHHHHHHHHh
Q psy11196 74 VM------DLGFDIRYE-SFENEVYHELFDS 97 (103)
Q Consensus 74 al------vLGFridP~-e~l~~~~ke~~~L 97 (103)
-+ ++-|..+|+ +.-+++++-++.+
T Consensus 79 ~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~~ 109 (125)
T d1zsqa1 79 ETVCKDIRNLRFAHKPEGRTRRSIFENLMKY 109 (125)
T ss_dssp EEEETTTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred EEEeccCeEEEEEEcCCccHHHHHHHHHHHh
Confidence 22 788888776 4456777777665
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.009 Score=40.62 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=40.1
Q ss_pred eeecCcccccCCceeeeeecceeeccCCC----CceeeEEEEeeeEEeecccccccCccee
Q psy11196 9 IVRRKELKMLPREHIYSQYQGVWNLSSDQ----GNLGVFMATNIRVVCTYYFGEVMDLGFD 65 (103)
Q Consensus 9 ii~~~~L~llp~E~i~~~~~gV~nls~dq----G~lG~f~vTNiRiV~~~W~a~~~~~~fN 65 (103)
+...|+-.|.|||.++-..+||-=--+++ -..|++++||-||| |... .++.++
T Consensus 9 ~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI---~v~~-~~~~~~ 65 (130)
T d2caya1 9 TTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRII---YIDD-AKPTQN 65 (130)
T ss_dssp BCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEE---EEES-SCHHHH
T ss_pred cccCCCeEccCCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEE---EecC-CCCcee
Confidence 34578889999999999999885333322 23799999999999 9887 555443
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.035 Score=37.06 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred cccCCceeeeeeccee----eccCCCCceeeEEEEeeeEEeeccccc
Q psy11196 16 KMLPREHIYSQYQGVW----NLSSDQGNLGVFMATNIRVVCTYYFGE 58 (103)
Q Consensus 16 ~llp~E~i~~~~~gV~----nls~dqG~lG~f~vTNiRiV~~~W~a~ 58 (103)
.|.|+|.++-+-+||- +-+.+ =.-|++++||-|+| |-..
T Consensus 8 ll~~~E~~l~~~~~V~lydG~~k~~-~~~G~l~LTthRli---~~~~ 50 (129)
T d2hthb1 8 LLEINETLVIQQRGVRIYDGEEKIK-FDAGTLLLSTHRLI---WRDQ 50 (129)
T ss_dssp CCCTTCCEEEEEEEEEEEETTCSSC-CCCEEEEEESSEEE---EEET
T ss_pred CCCCCcEEEEEeCCEEeecCCCccc-ccceEEEEEeceEE---EecC
Confidence 3789999999999996 33332 13599999999999 9644
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}
Back Show information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]
Probab=91.26 E-value=0.05 Score=36.67 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.8
Q ss_pred cccccCCceeeeeecceeeccCCCCceeeEEEEeeeEE
Q psy11196 14 ELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51 (103)
Q Consensus 14 ~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV 51 (103)
+--|+|||+|+..+..+ ...+++||-|+|
T Consensus 16 ~~lL~~gE~i~~~yk~~---------rD~~~FTnkRlI 44 (116)
T d3dcxa1 16 GPIMGDNEQLALAYRVI---------RDMFVFTNKRLI 44 (116)
T ss_dssp GGGSCTTCCEEEEEEET---------TEEEEEESSEEE
T ss_pred HHhcCCCCEEEEEEEee---------cceEEEecceEE
Confidence 34589999999999888 556889999999