Psyllid ID: psy11196


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
MSAYKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFRR
ccccccccEEEccEEEcccccEEEEEEccEEEcccccccEEEEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcc
ccccccccEEEcccEEEccccEEEEEcccEEEEcccccccEEEEEEEEEEEEEHHHHHHHcccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHcc
MSAYKSGAIVRRKElkmlprehiYSQYQGvwnlssdqgnlgvfMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHelfdshhvfrr
msayksgaivrrkelkmlprEHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYhelfdshhvfrr
MSAYKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFRR
*************ELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHV***
******G***RRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFR*
MSAYKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFRR
****KSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFRR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAYKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFDIRTYYFGEVMDLGFDIRYESFENEVYHELFDSHHVFRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query103 2.2.26 [Sep-21-2011]
Q66IS6 365 Bardet-Biedl syndrome 5 p N/A N/A 0.436 0.123 0.622 2e-12
Q9CZQ9 341 Bardet-Biedl syndrome 5 p yes N/A 0.427 0.129 0.590 1e-11
Q8N3I7 341 Bardet-Biedl syndrome 5 p yes N/A 0.427 0.129 0.590 1e-11
Q7ZWB7 342 Bardet-Biedl syndrome 5 p yes N/A 0.436 0.131 0.577 1e-11
Q4R649 341 Bardet-Biedl syndrome 5 p N/A N/A 0.427 0.129 0.590 1e-11
>sp|Q66IS6|BBS5_XENLA Bardet-Biedl syndrome 5 protein homolog OS=Xenopus laevis GN=bbs5 PE=2 SV=1 Back     alignment and function desciption
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           GA+++ K+LK+LPRE +Y +  GVWNLSSDQGNLG F  TN+R+V
Sbjct: 145 GALIQNKQLKLLPREQVYDKINGVWNLSSDQGNLGTFFITNVRIV 189




Required for ciliogenesis.
Xenopus laevis (taxid: 8355)
>sp|Q9CZQ9|BBS5_MOUSE Bardet-Biedl syndrome 5 protein homolog OS=Mus musculus GN=Bbs5 PE=2 SV=1 Back     alignment and function description
>sp|Q8N3I7|BBS5_HUMAN Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZWB7|BBS5_DANRE Bardet-Biedl syndrome 5 protein homolog OS=Danio rerio GN=bbs5 PE=2 SV=1 Back     alignment and function description
>sp|Q4R649|BBS5_MACFA Bardet-Biedl syndrome 5 protein homolog OS=Macaca fascicularis GN=BBS5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query103
348672493 348 hypothetical protein PHYSODRAFT_515023 [ 0.922 0.272 0.368 2e-11
255087046 345 predicted protein [Micromonas sp. RCC299 0.922 0.275 0.368 2e-11
301112689 348 bardet-Biedl syndrome 5 protein [Phytoph 0.922 0.272 0.368 3e-11
195453986 385 GK12823 [Drosophila willistoni] gi|19417 0.922 0.246 0.377 6e-11
148231484 365 Bardet-Biedl syndrome 5 protein homolog 0.436 0.123 0.622 9e-11
432098391 341 Bardet-Biedl syndrome 5 protein like pro 0.427 0.129 0.613 2e-10
348585675 341 PREDICTED: Bardet-Biedl syndrome 5 prote 0.427 0.129 0.613 2e-10
148695091 395 Bardet-Biedl syndrome 5 (human), isoform 0.427 0.111 0.590 2e-10
213510754 342 Bardet-Biedl syndrome 5 protein homolog 0.436 0.131 0.6 2e-10
325182780 345 bardetBiedl syndrome 5 protein putative 0.941 0.281 0.362 2e-10
>gi|348672493|gb|EGZ12313.1| hypothetical protein PHYSODRAFT_515023 [Phytophthora sojae] Back     alignment and taxonomy information
 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 19/114 (16%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD- 65
           GAI++ KEL +LP E +Y++  GVWNLSSDQGNLG F  TN+R+V      E  ++    
Sbjct: 150 GAIIKEKELTLLPHEQVYTRLNGVWNLSSDQGNLGTFFVTNVRIVWHANLAENFNVSIPY 209

Query: 66  -------IRTYYFGEVM-----------DLGFDIRYESFENEVYHELFDSHHVF 101
                  IR   FG  +            LGF +  E   +E++ E+   H VF
Sbjct: 210 MQINSARIRGSKFGPALVIETSAASGGYILGFRVDPEERLHELFKEMQSLHSVF 263




Source: Phytophthora sojae

Species: Phytophthora sojae

Genus: Phytophthora

Family:

Order: Peronosporales

Class:

Phylum:

Superkingdom: Eukaryota

>gi|255087046|ref|XP_002505446.1| predicted protein [Micromonas sp. RCC299] gi|226520716|gb|ACO66704.1| predicted protein [Micromonas sp. RCC299] Back     alignment and taxonomy information
>gi|301112689|ref|XP_002998115.1| bardet-Biedl syndrome 5 protein [Phytophthora infestans T30-4] gi|262112409|gb|EEY70461.1| bardet-Biedl syndrome 5 protein [Phytophthora infestans T30-4] Back     alignment and taxonomy information
>gi|195453986|ref|XP_002074033.1| GK12823 [Drosophila willistoni] gi|194170118|gb|EDW85019.1| GK12823 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|148231484|ref|NP_001087782.1| Bardet-Biedl syndrome 5 protein homolog [Xenopus laevis] gi|82181251|sp|Q66IS6.1|BBS5_XENLA RecName: Full=Bardet-Biedl syndrome 5 protein homolog gi|51704053|gb|AAH81218.1| Bbs5 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|432098391|gb|ELK28191.1| Bardet-Biedl syndrome 5 protein like protein [Myotis davidii] Back     alignment and taxonomy information
>gi|348585675|ref|XP_003478596.1| PREDICTED: Bardet-Biedl syndrome 5 protein homolog [Cavia porcellus] Back     alignment and taxonomy information
>gi|148695091|gb|EDL27038.1| Bardet-Biedl syndrome 5 (human), isoform CRA_b [Mus musculus] Back     alignment and taxonomy information
>gi|213510754|ref|NP_001134089.1| Bardet-Biedl syndrome 5 protein homolog [Salmo salar] gi|209730652|gb|ACI66195.1| Bardet-Biedl syndrome 5 protein homolog [Salmo salar] Back     alignment and taxonomy information
>gi|325182780|emb|CCA17235.1| bardetBiedl syndrome 5 protein putative [Albugo laibachii Nc14] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query103
FB|FBgn0037280 381 CG1126 [Drosophila melanogaste 0.436 0.118 0.644 4.2e-12
MGI|MGI:1919819 341 Bbs5 "Bardet-Biedl syndrome 5 0.427 0.129 0.590 1.1e-11
UNIPROTKB|Q8N3I7 341 BBS5 "Bardet-Biedl syndrome 5 0.427 0.129 0.590 1.4e-11
ZFIN|ZDB-GENE-040426-1083 342 bbs5 "Bardet-Biedl syndrome 5" 0.436 0.131 0.577 2.4e-11
UNIPROTKB|F1S1V8 544 LOC100156983 "Uncharacterized 0.427 0.080 0.590 3.8e-11
UNIPROTKB|A6QLF9 341 BBS5 "Uncharacterized protein" 0.427 0.129 0.568 6.5e-11
UNIPROTKB|E1C569 342 BBS5 "Uncharacterized protein" 0.427 0.128 0.613 6.6e-11
UNIPROTKB|A8HWI3 352 BBS5 "Bardet-biedl syndrome 5 0.436 0.127 0.555 1.9e-09
WB|WBGene00010974 361 bbs-5 [Caenorhabditis elegans 0.582 0.166 0.446 1.9e-08
UNIPROTKB|Q21626 361 bbs-5 "Protein BBS-5" [Caenorh 0.582 0.166 0.446 1.9e-08
FB|FBgn0037280 CG1126 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 151 (58.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query:     7 GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
             GAIV+  +L +LP E ++S  QGVWNLSSDQGNLG F+ TNIR+V
Sbjct:   162 GAIVQAGQLVILPDEEVFSHVQGVWNLSSDQGNLGSFVVTNIRLV 206


GO:0042384 "cilium assembly" evidence=ISM;IEP
MGI|MGI:1919819 Bbs5 "Bardet-Biedl syndrome 5 (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N3I7 BBS5 "Bardet-Biedl syndrome 5 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1083 bbs5 "Bardet-Biedl syndrome 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1V8 LOC100156983 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLF9 BBS5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C569 BBS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8HWI3 BBS5 "Bardet-biedl syndrome 5 protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
WB|WBGene00010974 bbs-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q21626 bbs-5 "Protein BBS-5" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N3I7BBS5_HUMANNo assigned EC number0.59090.42710.1290yesN/A
Q9CZQ9BBS5_MOUSENo assigned EC number0.59090.42710.1290yesN/A
Q7ZWB7BBS5_DANRENo assigned EC number0.57770.43680.1315yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query103
pfam07289 339 pfam07289, DUF1448, Protein of unknown function (D 1e-18
smart0068355 smart00683, DM16, Repeats in sea squirt COS41 4e-09
>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448) Back     alignment and domain information
 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 7   GAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVV 51
           GAI++  +L +LP E + S+  GVWNLSSDQGNLG F  TNIR+V
Sbjct: 141 GAIIQDGQLNLLPDEQVISRVNGVWNLSSDQGNLGTFFVTNIRLV 185


This family consists of several eukaryotic proteins of around 375 residues in length. The function of this family is unknown. It appears that this family includes a divergent GRAM domain. Length = 339

>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 103
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 100.0
smart0068355 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, 99.82
PF07289 339 DUF1448: Protein of unknown function (DUF1448); In 99.57
PF1447096 bPH_3: Bacterial PH domain 94.21
PF08000124 bPH_1: Bacterial PH domain; InterPro: IPR012544 Th 92.72
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 92.6
PF03517135 Voldacs: Regulator of volume decrease after cellul 91.66
KOG3294|consensus 261 90.1
smart0056861 GRAM domain in glucosyltransferases, myotubularins 88.16
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
Probab=100.00  E-value=2.4e-45  Score=300.13  Aligned_cols=96  Identities=46%  Similarity=0.841  Sum_probs=93.6

Q ss_pred             cchhceeecCcccccCCceeeeeecceeeccCCCCceeeEEEEeeeEEeecccccccCccee------------eeeecc
Q psy11196          4 YKSGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVCTYYFGEVMDLGFD------------IRTYYF   71 (103)
Q Consensus         4 ~lR~aii~~~~L~llp~E~i~~~~~gV~nls~dqG~lG~f~vTNiRiV~~~W~a~~~~~~fN------------ir~SKF   71 (103)
                      .||||||++|+|+|||+|+||++++||||||+|||++|+|++||||+|   |||+ +|+.||            ||+|||
T Consensus       138 klR~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiV---W~A~-~ne~fNVSiPylqi~~i~ir~SKf  213 (339)
T PF07289_consen  138 KLRGAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIV---WFAD-MNESFNVSIPYLQIKSIRIRDSKF  213 (339)
T ss_pred             hhheeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEE---EEcc-CCccccccchHhhheeeeeecccc
Confidence            479999999999999999999999999999999999999999999999   9999 999999            799999


Q ss_pred             cceE-----------EEEEecChhhHHHHHHHHHHHhhhhhhC
Q psy11196         72 GEVM-----------DLGFDIRYESFENEVYHELFDSHHVFRR  103 (103)
Q Consensus        72 G~al-----------vLGFridP~e~l~~~~ke~~~L~~~~~~  103 (103)
                      |+||           +|||||||+|||+++||||++||++|+.
T Consensus       214 G~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~sLh~vy~~  256 (339)
T PF07289_consen  214 GPALVIETSESSGGYVLGFRVDPEERLQELFKEIQSLHKVYSA  256 (339)
T ss_pred             ceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999           9999999999999999999999999973



It consists of eukaryotic proteins of around 375 residues in length.

>smart00683 DM16 Repeats in sea squirt COS41 Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation Back     alignment and domain information
>KOG3294|consensus Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query103
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 95.73
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 95.41
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 93.54
3hsa_A126 Pleckstrin homology domain; YP_926556.1, structura 92.29
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 88.79
1zyi_A171 Methylosome subunit picln; PH domain, cell volume 85.28
3b77_A193 Uncharacterized protein; pleckstrin-homology domai 82.86
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
Probab=95.73  E-value=0.0068  Score=51.49  Aligned_cols=45  Identities=22%  Similarity=0.229  Sum_probs=36.0

Q ss_pred             ecCcccccCCceeeeeecceeeccCC-CCceeeEEEEeeeEEeeccccc
Q psy11196         11 RRKELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVCTYYFGE   58 (103)
Q Consensus        11 ~~~~L~llp~E~i~~~~~gV~nls~d-qG~lG~f~vTNiRiV~~~W~a~   58 (103)
                      +...+.+||||.|....++|.-+... ....|++.+||-|++   +.+.
T Consensus         3 ~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLi---F~~~   48 (528)
T 1zsq_A            3 SMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSM   48 (528)
T ss_dssp             -CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEES
T ss_pred             CCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEE---EEcc
Confidence            34578899999999999999866433 245899999999999   7765



>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A* Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris} Back     alignment and structure
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query103
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 97.46
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 94.77
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 93.38
d3dcxa1116 Uncharacterized protein Shew0819 {Shewanella loihi 91.26
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46  E-value=0.00022  Score=47.97  Aligned_cols=81  Identities=23%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             cccccCCceeeeeecceeeccCCCC-ceeeEEEEeeeEEeecccccccCccee-------ee-e---------e--cccc
Q psy11196         14 ELKMLPREHIYSQYQGVWNLSSDQG-NLGVFMATNIRVVCTYYFGEVMDLGFD-------IR-T---------Y--YFGE   73 (103)
Q Consensus        14 ~L~llp~E~i~~~~~gV~nls~dqG-~lG~f~vTNiRiV~~~W~a~~~~~~fN-------ir-~---------S--KFG~   73 (103)
                      +..|||||.++...++|-=...-.| --|++.+||-|++   --+...++.+.       |. -         +  .+|.
T Consensus         2 ~~~llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrli---F~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L   78 (125)
T d1zsqa1           2 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLY---FKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGL   78 (125)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEE---EEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEE
T ss_pred             CCCcCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEE---EEcCCCCccEEEEeccceeeeeeecccccccCCccccE
Confidence            4579999999999999955543333 4699999999999   65542343332       11 1         1  1233


Q ss_pred             eE------EEEEecChh-hHHHHHHHHHHHh
Q psy11196         74 VM------DLGFDIRYE-SFENEVYHELFDS   97 (103)
Q Consensus        74 al------vLGFridP~-e~l~~~~ke~~~L   97 (103)
                      -+      ++-|..+|+ +.-+++++-++.+
T Consensus        79 ~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~~  109 (125)
T d1zsqa1          79 ETVCKDIRNLRFAHKPEGRTRRSIFENLMKY  109 (125)
T ss_dssp             EEEETTTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             EEEeccCeEEEEEEcCCccHHHHHHHHHHHh
Confidence            22      788888776 4456777777665



>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]} Back     information, alignment and structure