Psyllid ID: psy11354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSLQ
Secondary Structure (PSIPRED)
cccccccccccccccEEEccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHcccccEEccccHHHHHHHHHHHcHHcc
Coil and Loop (DISEMBL)
MSDDEDVIYVKkqntvhygslEEQERKRLAankdvdddqekytnvhtsnvymEIDDEMAKDKQALLQEFERRKKARhvnvstddnQVKLNLRqlgepiclfgegpaERRSRLRDLLSSLQ
Flexible Loop (DISEMBL)
msddedviyvkkqntvhygsleeqeRKRLaankdvdddqekytnvhtsnvymeidDEMAKDKQALLQEFErrkkarhvnvstddnqvklnlrqlgepiclfgegpaerrSRLRDLLSSLQ
Low Complexity Region (SEG)
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAErrsrlrdllsslQ
Disordered region (IsUnstruct)
*******IYV****************************************************************************VKLNLRQLGEPICLFG******************
Disordered Region (DISOPRED)
**********KKQNTVHYG******************************************************KARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLS***
Disordered Region (DISEMBL)
MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRL********
Disordered Region (DISPRO)
*****DVIYVKKQNTVHYGSLEEQERKRLAAN****************NVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDDEDVIYVKKQNTVHYGSxxxxxxxxxxxxxxxxxxxxxYTNVHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
O43172	522	U4/U6 small nuclear ribon	yes	N/A	0.95	0.218	0.504	5e-24
Q5NVD0	521	U4/U6 small nuclear ribon	yes	N/A	0.95	0.218	0.495	6e-24
Q3MHE2	521	U4/U6 small nuclear ribon	yes	N/A	0.95	0.218	0.495	6e-24
Q9DAW6	521	U4/U6 small nuclear ribon	yes	N/A	0.95	0.218	0.495	7e-24
O22212	554	U4/U6 small nuclear ribon	yes	N/A	0.433	0.093	0.480	6e-06

>sp|O43172|PRP4_HUMAN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 7/121 (5%)

Query: 4   DEDVIYVKKQNTVHYGSLEEQERKRLAAN------KDVDDDQEKYTNVH-TSNVYMEIDD 56
           D+ V  V K+  ++YGSLEE+ER+RLA        KD      +  N++ TS    EI++
Sbjct: 18  DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIEE 77

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
            +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAERR RLR++L
Sbjct: 78  HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 137

Query: 117 S 117
           S
Sbjct: 138 S 138

Involved in pre-mRNA splicing.
Homo sapiens (taxid: 9606)

>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)

Query: 4   DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
           D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct: 17  DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
            +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77  HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136

Query: 117 S 117
           S
Sbjct: 137 S 137

Involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q3MHE2|PRP4_BOVIN U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)

Query: 4   DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
           D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct: 17  DDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIEE 76

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
            +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77  HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136

Query: 117 S 117
           S
Sbjct: 137 S 137

Involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|Q9DAW6|PRP4_MOUSE U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)

Query: 4   DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
           D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct: 17  DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
            +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAERR RLR++L
Sbjct: 77  HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNIL 136

Query: 117 S 117
           S
Sbjct: 137 S 137

Involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%)

Query: 66  LQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLS 117
           LQ+   +++A  + V T+D  V+  LR+LGEPI LFGE   ERR+RL  LL+
Sbjct: 105 LQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLT 156

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
332029766	523	U4/U6 small nuclear ribonucleoprotein Pr	0.991	0.227	0.651	2e-42
48116262	525	PREDICTED: u4/U6 small nuclear ribonucle	0.991	0.226	0.643	8e-42
380028595	525	PREDICTED: U4/U6 small nuclear ribonucle	0.991	0.226	0.643	9e-42
307194495	523	U4/U6 small nuclear ribonucleoprotein Pr	0.991	0.227	0.651	9e-42
307168954	526	U4/U6 small nuclear ribonucleoprotein Pr	0.991	0.226	0.629	2e-40
340708706	525	PREDICTED: u4/U6 small nuclear ribonucle	0.991	0.226	0.628	2e-40
350413006	525	PREDICTED: U4/U6 small nuclear ribonucle	0.991	0.226	0.628	3e-40
242023811	509	U4/U6 small nuclear ribonucleoprotein Pr	0.991	0.233	0.642	1e-38
189234886	511	PREDICTED: similar to wd-repeat protein	0.991	0.232	0.650	1e-37
193666990	507	PREDICTED: u4/U6 small nuclear ribonucle	0.975	0.230	0.633	7e-37

>gi|332029766|gb|EGI69635.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Acromyrmex echinatior]

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/132 (65%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  D+++  TN             VH 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAATIETTDEEKDVTNANDVTNVSASGGNVHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK +LRQLGEPICLFGEGPA+
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL+S+
Sbjct: 121 RRTRLRELLASV 132

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48116262|ref|XP_393186.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4 [Apis mellifera]

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 85/132 (64%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  ++++  T             N+H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAAVAESSEEEKDTTTLGDNVNTVATLANIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQLGEPICLFGEGPA+
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKRNLRQLGEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL++L
Sbjct: 121 RRTRLRELLANL 132

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028595|ref|XP_003697980.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Apis florea]

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/132 (64%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +  ++++  T             N+H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAAVAESSEEEKDTTTLGDNVNNVATLANIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQLGEPICLFGEGPA+
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKRNLRQLGEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL++L
Sbjct: 121 RRTRLRELLANL 132

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194495|gb|EFN76787.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Harpegnathos saltator]

 Score =  173 bits (439), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/132 (65%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT-------------NVHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RLAA  +V D ++  T             NVH 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERTRLAAAVEVTDGEKDVTTTDDITNASISAGNVHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME+++EM+KD+QALL+EFERRKKAR +NVSTDD++VK +LRQLGEPICLFGEGPA+
Sbjct: 61  SNEYMELEEEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL+S+
Sbjct: 121 RRTRLRELLASV 132

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168954|gb|EFN61840.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Camponotus floridanus]

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/135 (62%), Positives = 103/135 (76%), Gaps = 16/135 (11%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAA----------------NKDVDDDQEKYTN 44
           MSDDED++YVKKQ TVHYGSLEE ER RLAA                  D+ +      N
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLAALQVAVEAADEEKDATNANDITNASNLVGN 60

Query: 45  VHTSNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEG 104
           VH SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK +LRQLGEPICLFGEG
Sbjct: 61  VHISNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEG 120

Query: 105 PAERRSRLRDLLSSL 119
           PA+RR+RLR+LL+S+
Sbjct: 121 PADRRTRLRELLASV 135

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708706|ref|XP_003392963.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4-like [Bombus terrestris]

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 104/132 (78%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RL A  +  ++++  TN             +H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESSEEEKNITNLGDNANATATLGNIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQL EPICLFGEGPA+
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL++L
Sbjct: 121 RRTRLRELLANL 132

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413006|ref|XP_003489846.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Bombus impatiens]

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 104/132 (78%), Gaps = 13/132 (9%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------------VHT 47
           MSDDED++YVKKQ TVHYGSLEE ER RL A  +  ++++  TN             +H 
Sbjct: 1   MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESAEEEKTTTNLGDNASATATLGNIHI 60

Query: 48  SNVYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
           SN YME++DEM+KD+QALL+EFERRKKAR +NVSTDD++VK NLRQL EPICLFGEGPA+
Sbjct: 61  SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD 120

Query: 108 RRSRLRDLLSSL 119
           RR+RLR+LL++L
Sbjct: 121 RRTRLRELLANL 132

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023811|ref|XP_002432324.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis] gi|212517747|gb|EEB19586.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 101/123 (82%), Gaps = 4/123 (3%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT----NVHTSNVYMEIDD 56
           MSDDE++IYVK+   +HYGSLEEQER +L  +   D D++  +    N+H S+ YM+I+D
Sbjct: 1   MSDDEEIIYVKRPKKIHYGSLEEQERAKLLESLKDDADKDAGSLLSGNIHISDEYMDIED 60

Query: 57  EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
           E++KD+ ALL+EFERRK+AR ++VSTDD+QVK NLRQLGEPICLFGEGPA+RRSRLRDLL
Sbjct: 61  EVSKDRAALLEEFERRKRARQIHVSTDDDQVKKNLRQLGEPICLFGEGPADRRSRLRDLL 120

Query: 117 SSL 119
           S L
Sbjct: 121 SKL 123

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234886|ref|XP_974218.2| PREDICTED: similar to wd-repeat protein [Tribolium castaneum] gi|270001442|gb|EEZ97889.1| hypothetical protein TcasGA2_TC000271 [Tribolium castaneum]

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/126 (65%), Positives = 96/126 (76%), Gaps = 7/126 (5%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYTN-------VHTSNVYME 53
           MSDDED  YVKK   +HYGSLEE ER RLAA    DD  EK  +       VH S  YME
Sbjct: 1   MSDDEDAPYVKKTKNIHYGSLEEAERARLAAGDGNDDSNEKAESTSANPPQVHISTEYME 60

Query: 54  IDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLR 113
           ++D M++DKQALL+EFERR+KAR +NVSTDD +VK NLRQLGEPICLFGEGPA+RRSRLR
Sbjct: 61  LEDAMSRDKQALLEEFERRRKARSINVSTDDAEVKRNLRQLGEPICLFGEGPADRRSRLR 120

Query: 114 DLLSSL 119
           ++LS +
Sbjct: 121 EILSRI 126

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193666990|ref|XP_001949663.1| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4-like [Acyrthosiphon pisum]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 99/120 (82%), Gaps = 3/120 (2%)

Query: 1   MSDDEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQEKYT---NVHTSNVYMEIDDE 57
           MSDDE++ YVKKQ T+HYGSLE+QER RL++    ++D E      N++ SN Y +++D 
Sbjct: 1   MSDDEEITYVKKQKTIHYGSLEDQERIRLSSLAFTENDGEPKVVGGNINVSNEYFDLEDA 60

Query: 58  MAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLS 117
           ++KDKQALL+EFER+KKARHV VSTDD++VK NLR+LG+ ICLFGEGPAERR+RLR+LLS
Sbjct: 61  ISKDKQALLEEFERKKKARHVQVSTDDDEVKKNLRKLGQAICLFGEGPAERRNRLRELLS 120

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
FB|FBgn0036733	553	U4-U6-60K "U4-U6 small nuclear	0.475	0.103	0.666	3.1e-26
UNIPROTKB|O43172	522	PRPF4 "U4/U6 small nuclear rib	0.866	0.199	0.486	3.2e-18
MGI|MGI:1917302	521	Prpf4 "PRP4 pre-mRNA processin	0.866	0.199	0.477	5.3e-18
RGD|1311303	521	Prpf4 "PRP4 pre-mRNA processin	0.866	0.199	0.477	5.3e-18
UNIPROTKB|F1PZB0	537	PRPF4 "Uncharacterized protein	0.866	0.193	0.477	5.7e-18
UNIPROTKB|I3LDL8	539	PRPF4 "Uncharacterized protein	0.866	0.192	0.477	5.8e-18
UNIPROTKB|Q3MHE2	521	PRPF4 "U4/U6 small nuclear rib	0.866	0.199	0.477	6.9e-18
UNIPROTKB|F1NNQ9	521	PRPF4 "Uncharacterized protein	0.8	0.184	0.485	1.9e-17
ZFIN|ZDB-GENE-030131-5143	507	prpf4 "PRP4 pre-mRNA processin	0.858	0.203	0.473	6.1e-17
ASPGD|ASPL0000042645	521	AN1468 [Emericella nidulans (t	0.408	0.094	0.510	2.3e-08

FB|FBgn0036733 U4-U6-60K "U4-U6 small nuclear riboprotein factor 60K" [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query:    51 YMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
             Y +++ EM +DK ALL+EFER+K+AR +NVSTDD ++K NLRQL EPIC FGEGPAE
Sbjct:   101 YFDLEMEMERDKVALLEEFERKKRARQINVSTDDTEIKSNLRQLNEPICYFGEGPAE 157

GO:0005688 "U6 snRNP" evidence=ISS

GO:0005687 "U4 snRNP" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0030621 "U4 snRNA binding" evidence=IDA

GO:0017070 "U6 snRNA binding" evidence=IDA

UNIPROTKB|O43172 PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 54/111 (48%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKD--VDDDQEKYT----NVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +   +  D  K      N++ TS    EI++
Sbjct:    18 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIEE 77

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    78 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 128

GO:0016607 "nuclear speck" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=NAS

GO:0005681 "spliceosomal complex" evidence=IC;NAS

GO:0008380 "RNA splicing" evidence=NAS;TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0015030 "Cajal body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0071001 "U4/U6 snRNP" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1917302 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct:    17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISO

GO:0071001 "U4/U6 snRNP" evidence=ISO

RGD|1311303 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct:    17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 76

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127

GO:0005634 "nucleus" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA;ISO

GO:0071001 "U4/U6 snRNP" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1PZB0 PRPF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct:    33 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 92

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    93 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 143

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|I3LDL8 PRPF4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct:    35 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEE 94

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    95 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 145

GO:0071001 "U4/U6 snRNP" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q3MHE2 PRPF4 "U4/U6 small nuclear ribonucleoprotein Prp4" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 6.9e-18, P = 6.9e-18
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAANKDVDDDQE------KYTNVH-TSNVYMEIDD 56
             D+ V  V K+  ++YGSLEE+ER+RLA  +     +E      +  N++ TS    EI++
Sbjct:    17 DDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIEE 76

Query:    57 EMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
              +++ +  +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    77 HISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127

GO:0016607 "nuclear speck" evidence=IEA

GO:0071001 "U4/U6 snRNP" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|F1NNQ9 PRPF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 50/103 (48%), Positives = 70/103 (67%)

Query:    12 KQNTVHYGSLEEQERKRLAANKD--VDDDQEKYT----NVH-TSNVYMEIDDEMAKDKQA 64
             K+  + YGSLEE+ER+RLA  +   +  +  K      N++ +S    E++D M++ +  
Sbjct:    25 KRAPIFYGSLEEKERERLAKGESGLLGKEGMKAALEAGNINISSGEVFELEDHMSERQAE 84

Query:    65 LLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
             +L EFERRK+AR +NVSTDD++VK  LR LGEPI LFGEGPAE
Sbjct:    85 VLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0071001 "U4/U6 snRNP" evidence=IEA

ZFIN|ZDB-GENE-030131-5143 prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 6.1e-17, P = 6.1e-17
 Identities = 53/112 (47%), Positives = 74/112 (66%)

Query:     4 DEDVIYVKKQNTVHYGSLEEQERKRLAAN------KD-VDDDQEK-YTNVHTSNVYMEID 55
             DED   V K++ + YGSLEE+E++RL+        KD V    E  + N+ +S   ME++
Sbjct:     3 DEDEAPVVKRSRIFYGSLEEKEKERLSREGTSTTAKDAVKAGIEAGHINI-SSGESMEME 61

Query:    56 DEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
             + +++ +  +L EFERRK+AR + VSTDD +VK  LR LGEPI LFGEGPAE
Sbjct:    62 ERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAE 113

GO:0008380 "RNA splicing" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

ASPGD|ASPL0000042645 AN1468 [Emericella nidulans (taxid:162425)]

 Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query:    59 AKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAE 107
             A+   A++ +FER+++A  + V TDD +V+  LR+LGEPI LFGEGPA+
Sbjct:    42 AEKASAIISQFERKRRAAAMAVPTDDTRVRARLRELGEPITLFGEGPAD 90

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43172	PRP4_HUMAN	No assigned EC number	0.5041	0.95	0.2183	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
pfam08799	30	pfam08799, PRP4, pre-mRNA processing factor 4 (PRP	2e-11
smart00500	44	smart00500, SFM, Splicing Factor Motif, present in	2e-08

>gnl|CDD|204069 pfam08799, PRP4, pre-mRNA processing factor 4 (PRP4) like

 Score = 53.9 bits (131), Expect = 2e-11
 Identities = 20/30 (66%), Positives = 22/30 (73%)

Query: 87  VKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
           V   LR+LGEPI LFGE  A+RR RLR LL
Sbjct: 1   VIRRLRELGEPITLFGETDADRRERLRKLL 30

This small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. Length = 30

>gnl|CDD|128776 smart00500, SFM, Splicing Factor Motif, present in Prp18 and Pr04

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 21/37 (56%), Positives = 24/37 (64%)

Query: 82  TDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS 118
             D++V   LR+LGEPI LFGE   ERR RLR LL  
Sbjct: 1   LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIV 37

Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG0272|consensus	459		99.65
smart00500	44	SFM Splicing Factor Motif, present in Prp18 and Pr	99.61
PF08799	30	PRP4: pre-mRNA processing factor 4 (PRP4) like; In	99.55
KOG2808|consensus	341		97.41

>KOG0272|consensus

Probab=99.65  E-value=2.3e-16  Score=136.16  Aligned_cols=70  Identities=47%  Similarity=0.688  Sum_probs=63.6

Q ss_pred             ccccccHhhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHhhCCCccccCCChHHHHHHHHHHHhhc
Q psy11354         50 VYMEIDDEMAKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSSL  119 (120)
Q Consensus        50 e~~~~~~~~~~~~~~~L~e~E~~rr~r~~~vPT~D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll~~~  119 (120)
                      +++.......+.++++|++|+++++++.+.|||+|.+|+..||.||||||+|||++.+||+||++||+..
T Consensus        16 ~~~e~~~q~~~~~a~~l~e~e~r~ra~~l~vpteD~evr~~Lr~l~ePi~~fgE~~~~RR~RL~~lL~~~   85 (459)
T KOG0272|consen   16 EQSEGSTQNERRQAALLAEFERRRRARLLKVPTEDSEVRSPLRALKEPITLFGEDALARRQRLRELLSVA   85 (459)
T ss_pred             hhhhhhhhhHHHHHHHHHHhhHHhhHHHhcCCccHHHHHHHHHHhCCCCcccCCCHHHHHHHHHHHHHHh
Confidence            4455555567899999999999999999999999999999999999999999999999999999999853

>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04

Probab=99.61  E-value=7.7e-16  Score=96.51  Aligned_cols=37  Identities=57%  Similarity=0.842  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHhhCCCccccCCChHHHHHHHHHHHhh
Q psy11354         82 TDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS  118 (120)
Q Consensus        82 T~D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll~~  118 (120)
                      |+|.+|+.+||+||||||||||++.+||+||++|+..
T Consensus         1 ~~d~eV~~~LR~lgePi~lFGE~~~~Rr~RL~~ll~~   37 (44)
T smart00500        1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIV   37 (44)
T ss_pred             CCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999999864

>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins

Probab=99.55  E-value=3.5e-15  Score=87.06  Aligned_cols=30  Identities=67%  Similarity=1.056  Sum_probs=24.8

Q ss_pred             HHHHHHhhCCCccccCCChHHHHHHHHHHH
Q psy11354         87 VKLNLRQLGEPICLFGEGPAERRSRLRDLL  116 (120)
Q Consensus        87 Vr~~LR~LgePi~LFGE~~~~RR~RLr~ll  116 (120)
                      |+++||+||||||||||++.+|++||++|+
T Consensus         1 V~~~LR~lgePi~lFGE~~~~R~~RLr~l~   30 (30)
T PF08799_consen    1 VRRRLRELGEPITLFGETDADRRERLRRLL   30 (30)
T ss_dssp             HHHHHHHCT--SCETT--HHHHHHHHHHHH
T ss_pred             ChHHHHhcCCChhhhCCChHHHHHHHHHhC
Confidence            789999999999999999999999999985

PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.

>KOG2808|consensus

Probab=97.41  E-value=0.00014  Score=61.97  Aligned_cols=33  Identities=42%  Similarity=0.625  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhCCCccccCCChHHHHHHHHHHH
Q psy11354         84 DNQVKLNLRQLGEPICLFGEGPAERRSRLRDLL  116 (120)
Q Consensus        84 D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll  116 (120)
                      -.+|..+||++|+||+||||++.++++||+.+.
T Consensus        77 ~sev~~rLre~~~Pi~lfGEtd~~~k~rl~~~e  109 (341)
T KOG2808|consen   77 RSEVIRRLRERGEPIILFGETDKSAKDRLRQKE  109 (341)
T ss_pred             hHHHHHHHHHcCCCccccCCCCHHHHHHHHHhc
Confidence            578999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
1mzw_B	31	Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN H		8e-04

>pdb|1MZW|B Chain B, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN Spliceosomal Cyclophilin H And A U4U6-60k Peptide Length = 31

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 86  QVKLNLRQLGEPICLFGEGPAE 107
           +VK +LR LGEPI LFGEGPAE
Sbjct: 1   EVKASLRALGEPITLFGEGPAE 22

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
1mzw_B	31	U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-p	7e-13
2dk4_A	76	PRE-mRNA-splicing factor 18; SFM domain, HPRP18, s	1e-05

>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} Length = 31

 Score = 57.0 bits (138), Expect = 7e-13
 Identities = 23/31 (74%), Positives = 27/31 (87%)

Query: 86  QVKLNLRQLGEPICLFGEGPAERRSRLRDLL 116
           +VK +LR LGEPI LFGEGPAERR RLR++L
Sbjct: 1   EVKASLRALGEPITLFGEGPAERRERLRNIL 31

>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1 Length = 76

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 59  AKDKQALLQEFERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDL 115
                +     E       + ++    +V   LR+ GEPI LFGE   +   RLR +
Sbjct: 4   GSSGTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2dk4_A	76	PRE-mRNA-splicing factor 18; SFM domain, HPRP18, s	99.63
1mzw_B	31	U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-p	99.57

>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1

Probab=99.63  E-value=2.6e-16  Score=107.61  Aligned_cols=41  Identities=34%  Similarity=0.479  Sum_probs=39.0

Q ss_pred             cCCCCCHHHHHHHHHhhCCCccccCCChHHHHHHHHHHHhh
Q psy11354         78 VNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS  118 (120)
Q Consensus        78 ~~vPT~D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll~~  118 (120)
                      +.|||+|.+|+++||+||||||||||++.+||+||++|+..
T Consensus        23 ~~v~~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RLr~l~~~   63 (76)
T 2dk4_A           23 LPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEIL   63 (76)
T ss_dssp             SSCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHhc
Confidence            37999999999999999999999999999999999999874

>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}

Probab=99.57  E-value=7.9e-16  Score=89.51  Aligned_cols=31  Identities=74%  Similarity=1.237  Sum_probs=29.6

Q ss_pred             HHHHHHHhhCCCccccCCChHHHHHHHHHHH
Q psy11354         86 QVKLNLRQLGEPICLFGEGPAERRSRLRDLL  116 (120)
Q Consensus        86 eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll  116 (120)
                      +|+.+||+||||||||||++.+||+||+++|
T Consensus         1 eV~~~LR~lgePi~lFGE~~~~Rr~RLr~ll   31 (31)
T 1mzw_B            1 EVKASLRALGEPITLFGEGPAERRERLRNIL   31 (31)
T ss_dssp             CHHHHHHHTTCCSEETTCCHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCCeeecCCChHHHHHHHHHhC
Confidence            5899999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d2dk4a1	63	a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Hu	3e-13

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 3e-13
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 70  ERRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLSS 118
           E       + ++    +V   LR+ GEPI LFGE   +   RLR +   
Sbjct: 8   ELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEIL 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d2dk4a1	63	Pre-mRNA-splicing factor 18 {Human (Homo sapiens)	99.66

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-17  Score=109.51  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=42.9

Q ss_pred             HHHhhhhcCCCCCHHHHHHHHHhhCCCccccCCChHHHHHHHHHHHh
Q psy11354         71 RRKKARHVNVSTDDNQVKLNLRQLGEPICLFGEGPAERRSRLRDLLS  117 (120)
Q Consensus        71 ~~rr~r~~~vPT~D~eVr~~LR~LgePi~LFGE~~~~RR~RLr~ll~  117 (120)
                      .+.....+.|||+|.+|+.+||+||||||||||++++||+||+.|..
T Consensus         9 ~~~~~~~~~v~l~~~eV~~~LR~lgePI~lFGE~~~~rr~RLr~le~   55 (63)
T d2dk4a1           9 LELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEI   55 (63)
T ss_dssp             CSSSCCCSSCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHH
T ss_pred             hhhhhccCCCCCCHHHHHHHHHHcCCCeehhcCChHHHHHHHHHHHh
Confidence            34456788999999999999999999999999999999999999875