Psyllid ID: psy11402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHEHHHHHHHcHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msnldnrianpdqlLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTstlgyqtpTVMLGYLVVSGVILthlrrpagrmtvtEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Flexible Loop (DISEMBL)
msnldnrianpdqLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILThlrrpagrmtvteqklegefRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Low Complexity Region (SEG)
MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Disordered region (IsUnstruct)
************QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW*****
Disordered Region (DISOPRED)
**NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Disordered Region (DISEMBL)
MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Disordered Region (DISPRO)
****DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
P28288	659	ATP-binding cassette sub-	yes	N/A	0.940	0.192	0.677	8e-48
P55096	659	ATP-binding cassette sub-	yes	N/A	0.940	0.192	0.653	1e-46
P16970	659	ATP-binding cassette sub-	yes	N/A	0.933	0.191	0.650	3e-46
Q8T8P3	741	ABC transporter D family	yes	N/A	0.888	0.161	0.375	4e-24
P48410	736	ATP-binding cassette sub-	no	N/A	0.940	0.172	0.353	1e-17
P33897	745	ATP-binding cassette sub-	no	N/A	0.940	0.170	0.353	2e-17
Q9UBJ2	740	ATP-binding cassette sub-	no	N/A	0.829	0.151	0.381	5e-17
Q94FB9	1337	ABC transporter D family	yes	N/A	0.918	0.092	0.346	9e-17
Q61285	741	ATP-binding cassette sub-	no	N/A	0.829	0.151	0.381	1e-16
Q9QY44	741	ATP-binding cassette sub-	no	N/A	0.829	0.151	0.381	1e-16

>sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1

 Score =  188 bits (478), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 104/127 (81%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YLVVSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK TV +
Sbjct: 235 AYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHS 294

Query: 121 AFNKLVS 127
            F KLV 
Sbjct: 295 VFRKLVE 301

Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity.
Homo sapiens (taxid: 9606)

>sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 103/127 (81%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+VSG+ LT LRRP G+MT+ EQK EGE+RY+NSRLI+NSEEIAFY GN+REK T+ +
Sbjct: 235 AYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHS 294

Query: 121 AFNKLVS 127
            F KLV 
Sbjct: 295 VFRKLVE 301

Mus musculus (taxid: 10090)

>sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 103/126 (81%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct: 175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+VSG+ LT LRRP G+MT+ EQK EGE+R++NSRLI+NSEEIAFY GN+REK T+ +
Sbjct: 235 AYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHS 294

Query: 121 AFNKLV 126
            F KLV
Sbjct: 295 VFRKLV 300

Rattus norvegicus (taxid: 10116)

>sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 81/120 (67%)

Query: 6   NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVV 65
           +RI N DQ +T+D+++FC+  + LY+ + KP LD+V++  +L   +G+ +P +M  Y +V
Sbjct: 218 DRIDNADQRVTSDIEQFCNSMSSLYTTLFKPFLDLVLFTRKLVVVMGWGSPLLMFSYFIV 277

Query: 66  SGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKL 125
           SG +   +  P GR+T  + +LEG +R ++ RLI+N+EEIAFY G+++E+  +  +F  +
Sbjct: 278 SGFLKKLIMPPFGRLTAKQSELEGNYRTVHQRLITNAEEIAFYDGSRKERQIINLSFGDI 337

Dictyostelium discoideum (taxid: 44689)

>sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRL-----TSTLGYQT 55
           +SN+D R+ NPDQ LT D+  F      LYSN+ KP+LD+ +  Y L     +   G   
Sbjct: 183 VSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAW 242

Query: 56  PTVMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
           P+ + G +V ++  +L       G +   E + +GE RY++SR+++NSEEIAFY G++ E
Sbjct: 243 PSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVE 302

Query: 115 KLTVLAAFNKLVS 127
              +  ++  L S
Sbjct: 303 LALLQHSYQDLAS 315

Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane.

Mus musculus (taxid: 10090)

>sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 6/133 (4%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRL-----TSTLGYQT 55
           +SN+D R+ NPDQ LT D+  F      LYSN+ KP+LD+ +  Y L     +   G   
Sbjct: 183 VSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAW 242

Query: 56  PTVMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
           P+ + G +V ++  +L       G +   E + +GE RY++SR+++NSEEIAFY G++ E
Sbjct: 243 PSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVE 302

Query: 115 KLTVLAAFNKLVS 127
              +  ++  L S
Sbjct: 303 LALLQRSYQDLAS 315

Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 6/118 (5%)

Query: 3   NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
           N+D R+ANPDQ LT D+  F      LYSN+ KP+LD+++  Y L  T   +      PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASPIGPT 257

Query: 58  VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
           ++ G +V  +  +L       G++   E   +G  RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315

Probable transporter.

Homo sapiens (taxid: 9606)

>sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 6/130 (4%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVM- 59
           +S++D RI +P+Q + +D+ +F    +DL  +    V D ++Y +RL S   Y +P  + 
Sbjct: 198 ISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILYAWRLCS---YASPKYIF 254

Query: 60  --LGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLT 117
             L Y++ +G  + +     G++   EQ+LEGE+R ++SRL ++SE IAFY G  RE+  
Sbjct: 255 WILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGETREESH 314

Query: 118 VLAAFNKLVS 127
           +   F  LVS
Sbjct: 315 IQQKFKNLVS 324

Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 7

>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)

Query: 3   NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
           N+D R+ANPDQ LT D+  F      LYSN+ KP+LD+++  Y L  T   +      PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPT 257

Query: 58  VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
           ++ G +V  +  +L       G +   E   +G  RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGSLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315

Probable transporter.

Mus musculus (taxid: 10090)

>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)

Query: 3   NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----TPT 57
           N+D R+ANPDQ LT D+  F      LYSN+ KP+LD+++  Y L  T   +      PT
Sbjct: 198 NMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPT 257

Query: 58  VMLGYLV-VSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQRE 114
           ++ G +V  +  +L       G +   E   +G  RY++SR+I+N EEIAFY+G++ E
Sbjct: 258 LLAGLVVYATAKVLKACSPKFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVE 315

Probable transporter.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
328719069	664	PREDICTED: ATP-binding cassette sub-fami	0.940	0.191	0.818	2e-57
242013169	663	peroxisomal membrane protein 70 abcd3, p	0.940	0.191	0.803	2e-54
170062340	605	peroxisomal membrane protein 70 abcd3 [C	0.940	0.209	0.771	3e-52
157132870	659	peroxisomal membrane protein 70 abcd3 [A	0.940	0.192	0.771	8e-52
58380607	659	AGAP000440-PA [Anopheles gambiae str. PE	0.940	0.192	0.763	3e-51
383859210	664	PREDICTED: ATP-binding cassette sub-fami	0.940	0.191	0.740	8e-51
312375587	659	hypothetical protein AND_13976 [Anophele	0.940	0.192	0.755	9e-51
340729550	664	PREDICTED: ATP-binding cassette sub-fami	0.940	0.191	0.708	2e-49
66560307	664	PREDICTED: ATP-binding cassette sub-fami	0.940	0.191	0.708	2e-49
350411714	663	PREDICTED: ATP-binding cassette sub-fami	1.0	0.203	0.674	3e-49

>gi|328719069|ref|XP_001947679.2| PREDICTED: ATP-binding cassette sub-family D member 3-like [Acyrthosiphon pisum]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/127 (81%), Positives = 120/127 (94%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           ++NLDNRI+NPDQLLTAD+DKFCDMFTDLYSN+CKP LDIVIYVY+LTSTLG+QTP+VML
Sbjct: 185 INNLDNRISNPDQLLTADVDKFCDMFTDLYSNVCKPFLDIVIYVYKLTSTLGFQTPSVML 244

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
           GYL+VSG ILT+LRRP G+MTV EQKLEGE+RYINSRLI+NSEEIAFY GN REKLT+LA
Sbjct: 245 GYLMVSGFILTYLRRPTGKMTVIEQKLEGEYRYINSRLITNSEEIAFYNGNNREKLTMLA 304

Query: 121 AFNKLVS 127
           +FNKL +
Sbjct: 305 SFNKLTN 311

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013169|ref|XP_002427287.1| peroxisomal membrane protein 70 abcd3, putative [Pediculus humanus corporis] gi|212511628|gb|EEB14549.1| peroxisomal membrane protein 70 abcd3, putative [Pediculus humanus corporis]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/127 (80%), Positives = 115/127 (90%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLDNRIANPDQLLT D+DKFC+ FTDLYSNI KP+LDI IYVYRLTS LG +TP +M+
Sbjct: 176 MSNLDNRIANPDQLLTVDVDKFCETFTDLYSNIAKPMLDIFIYVYRLTSGLGGETPGIMM 235

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+VSGV+LT+LRRP GR+TV EQKLEGEFRYINSRLI+NSEEIAFYQGN REKLT+LA
Sbjct: 236 MYLLVSGVLLTYLRRPTGRLTVIEQKLEGEFRYINSRLITNSEEIAFYQGNNREKLTILA 295

Query: 121 AFNKLVS 127
           AFNKL +
Sbjct: 296 AFNKLTN 302

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062340|ref|XP_001866626.1| peroxisomal membrane protein 70 abcd3 [Culex quinquefasciatus] gi|167880268|gb|EDS43651.1| peroxisomal membrane protein 70 abcd3 [Culex quinquefasciatus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 113/127 (88%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLDNRIAN DQLLT D+DKFC+  TDLYSNICKP+LDIVIYVYRLT+ LG QTP ++L
Sbjct: 126 MSNLDNRIANADQLLTTDIDKFCESVTDLYSNICKPLLDIVIYVYRLTTNLGGQTPGILL 185

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL  SGV LT+LR+P GR+TV EQKLEGEFRY+NSRLI+NSEEIAFY+GN REKLT+LA
Sbjct: 186 LYLFFSGVFLTNLRKPTGRLTVMEQKLEGEFRYVNSRLITNSEEIAFYKGNNREKLTILA 245

Query: 121 AFNKLVS 127
           +FNKLV+
Sbjct: 246 SFNKLVA 252

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132870|ref|XP_001662679.1| peroxisomal membrane protein 70 abcd3 [Aedes aegypti] gi|108881642|gb|EAT45867.1| AAEL002913-PA [Aedes aegypti]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 112/127 (88%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLDNRIAN DQLLT D+DKFC+  TDLYSNICKP+LDIVIYVYRLT+ LG  TP ++L
Sbjct: 180 MSNLDNRIANADQLLTTDIDKFCESVTDLYSNICKPLLDIVIYVYRLTTNLGGTTPGILL 239

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL  SGV LT+LR+P GR+TV EQKLEGEFRY+NSRLI+NSEEIAFY+GN REKLT+LA
Sbjct: 240 LYLFFSGVFLTNLRKPTGRLTVMEQKLEGEFRYVNSRLITNSEEIAFYRGNNREKLTILA 299

Query: 121 AFNKLVS 127
           +FNKLVS
Sbjct: 300 SFNKLVS 306

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58380607|ref|XP_310656.2| AGAP000440-PA [Anopheles gambiae str. PEST] gi|55243365|gb|EAA06513.2| AGAP000440-PA [Anopheles gambiae str. PEST]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLDNRIAN DQLLT D+DKFC+  TDLYSNICKP+LDIVIYVYRLT+ LG  TP ++L
Sbjct: 179 MSNLDNRIANADQLLTTDIDKFCESVTDLYSNICKPLLDIVIYVYRLTTNLGGTTPGILL 238

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL  SGV LT+LR+P GR+TV EQKLEGEFRY+NSRLI+NSEEIAFY+GN REKLT+LA
Sbjct: 239 LYLFFSGVFLTNLRKPTGRLTVLEQKLEGEFRYVNSRLITNSEEIAFYKGNNREKLTILA 298

Query: 121 AFNKLVS 127
           +FNKLV 
Sbjct: 299 SFNKLVG 305

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859210|ref|XP_003705089.1| PREDICTED: ATP-binding cassette sub-family D member 3-like [Megachile rotundata]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 114/127 (89%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLD+RIANPDQLLT D+DKFC+  TDLYSN+ KP+LDIVIYVYRLT+ LG QTP +ML
Sbjct: 179 MSNLDSRIANPDQLLTTDVDKFCESCTDLYSNVAKPLLDIVIYVYRLTTNLGGQTPVIML 238

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YLV +G++LTHLR+P G+MTV EQ+LEGE+R+INSRLI+NSEEIAFYQGN REKLT+L 
Sbjct: 239 SYLVFAGMVLTHLRKPIGQMTVKEQRLEGEYRHINSRLITNSEEIAFYQGNNREKLTLLT 298

Query: 121 AFNKLVS 127
           +F+KLV+
Sbjct: 299 SFHKLVT 305

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375587|gb|EFR22929.1| hypothetical protein AND_13976 [Anopheles darlingi]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 112/127 (88%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLDNRIAN DQLLT D+DKFC+  TDLYSNICKP+LDIVIYVYRLT+ LG  TP ++L
Sbjct: 180 MSNLDNRIANADQLLTTDIDKFCESVTDLYSNICKPLLDIVIYVYRLTTNLGGTTPGILL 239

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL  SGV LT+LR+P GR+TV EQKLEGEFRY+NSRLI+NSEEIAFY+GN REKLT+LA
Sbjct: 240 LYLFFSGVFLTNLRKPTGRLTVMEQKLEGEFRYVNSRLITNSEEIAFYRGNNREKLTILA 299

Query: 121 AFNKLVS 127
           +F+KLV+
Sbjct: 300 SFSKLVA 306

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729550|ref|XP_003403063.1| PREDICTED: ATP-binding cassette sub-family D member 3-like [Bombus terrestris]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 114/127 (89%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLD+RIANPDQLLT D+DKFC+  T+LYSNI KP+LDI IYVYRLT+ LG +TP +ML
Sbjct: 180 MSNLDSRIANPDQLLTTDVDKFCESCTNLYSNIAKPLLDIAIYVYRLTTNLGGETPLIML 239

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+ +GV++THLR+P G+MTV EQ+LEGE+R+INSRLI+NSEEIAFYQGN REKLT+L+
Sbjct: 240 SYLIFAGVVITHLRKPIGQMTVKEQRLEGEYRHINSRLITNSEEIAFYQGNNREKLTILS 299

Query: 121 AFNKLVS 127
           +F+KL++
Sbjct: 300 SFHKLMT 306

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66560307|ref|XP_624872.1| PREDICTED: ATP-binding cassette sub-family D member 3-like [Apis mellifera]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 113/127 (88%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           M+NLDNRIANPDQLLT D+DKFC+  TDLYSN+ KP+LDI+IYVYRLTSTLG +TP +ML
Sbjct: 179 MNNLDNRIANPDQLLTTDVDKFCESCTDLYSNLTKPLLDIIIYVYRLTSTLGSETPIIML 238

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+ +G+I+THLR+P G+MTV EQ LEGE+R+INSR+I+NSEEIAFYQGN REKL +L 
Sbjct: 239 SYLIFAGMIITHLRKPIGQMTVKEQCLEGEYRHINSRIITNSEEIAFYQGNNREKLILLT 298

Query: 121 AFNKLVS 127
           +F+KL++
Sbjct: 299 SFHKLIT 305

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411714|ref|XP_003489430.1| PREDICTED: ATP-binding cassette sub-family D member 3-like [Bombus impatiens]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 117/135 (86%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           MSNLD+RIANPDQLLT D+DKFC+  T+LYSNI KP+LDI IYVYRLT+ LG +TP +ML
Sbjct: 179 MSNLDSRIANPDQLLTTDVDKFCESCTNLYSNITKPLLDIAIYVYRLTTNLGGETPLIML 238

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL+ +GV++THLR+P G+MTV EQ+LEGE+R+INSRLI+NSEEIAFYQGN REKLT+L+
Sbjct: 239 SYLIFAGVVITHLRKPIGQMTVKEQRLEGEYRHINSRLITNSEEIAFYQGNNREKLTILS 298

Query: 121 AFNKLVSMSWKGTQY 135
           +F+KL++   K  ++
Sbjct: 299 SFHKLMTHLRKCQEF 313

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0031069	665	Pmp70 [Drosophila melanogaster	0.940	0.190	0.732	3.8e-46
UNIPROTKB|A7Z038	656	ABCD3 "Uncharacterized protein	0.933	0.192	0.666	6.4e-44
UNIPROTKB|F5GYC1	586	ABCD3 "ATP-binding cassette su	0.933	0.215	0.682	8.1e-44
UNIPROTKB|P28288	659	ABCD3 "ATP-binding cassette su	0.933	0.191	0.682	8.1e-44
UNIPROTKB|F1P843	646	ABCD3 "Uncharacterized protein	0.933	0.195	0.666	1e-43
UNIPROTKB|I3LI20	656	ABCD3 "Uncharacterized protein	0.933	0.192	0.674	1e-43
UNIPROTKB|I3LJ79	393	LOC100620952 "Uncharacterized	0.933	0.320	0.674	1e-43
UNIPROTKB|E7EUE1	683	ABCD3 "ATP-binding cassette su	0.933	0.184	0.682	1.4e-43
UNIPROTKB|J9P7K3	695	ABCD3 "Uncharacterized protein	0.933	0.181	0.666	2.2e-43
MGI|MGI:1349216	659	Abcd3 "ATP-binding cassette, s	0.933	0.191	0.658	1.3e-42

FB|FBgn0031069 Pmp70 [Drosophila melanogaster (taxid:7227)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 93/127 (73%), Positives = 110/127 (86%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             MSNLDNRIAN DQLLT D+DKFC+  TDLYSNI KPVLDI IYVYRLT  LG +TP++++
Sbjct:   179 MSNLDNRIANADQLLTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILM 238

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+ +GV LT LRRP GR+TV EQKLEGEFRY+NSRLI+NSEE+AFYQGN REKLT+LA
Sbjct:   239 LYLLFAGVFLTRLRRPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLA 298

Query:   121 AFNKLVS 127
             +++KL S
Sbjct:   299 SYSKLRS 305

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y++RLTS +G Q P  M+
Sbjct:   175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFRLTSAIGAQGPASMM 234

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT +RRP G+MT+TEQKLEGE+RY+NSRLI+NSEE+AFY GN+REK T+ +
Sbjct:   235 AYLLVSGLFLTRIRRPIGKMTITEQKLEGEYRYVNSRLITNSEEVAFYNGNKREKQTIHS 294

Query:   121 AFNKLV 126
              F KLV
Sbjct:   295 VFQKLV 300

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5GYC1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/126 (68%), Positives = 104/126 (82%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   102 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 161

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YLVVSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK TV +
Sbjct:   162 AYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHS 221

Query:   121 AFNKLV 126
              F KLV
Sbjct:   222 VFRKLV 227

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P28288 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/126 (68%), Positives = 104/126 (82%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YLVVSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK TV +
Sbjct:   235 AYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHS 294

Query:   121 AFNKLV 126
              F KLV
Sbjct:   295 VFRKLV 300

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IGI

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IGI

GO:0007031 "peroxisome organization" evidence=IMP;IDA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1P843 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q PT M+
Sbjct:   161 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPTSMM 220

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT LRRP G+MT+TEQK EGE+R++NSRLI+NSEEIAFY GN+REK T+ +
Sbjct:   221 AYLIVSGLFLTRLRRPIGKMTITEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHS 280

Query:   121 AFNKLV 126
              F KLV
Sbjct:   281 VFRKLV 286

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|I3LI20 ABCD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 85/126 (67%), Positives = 104/126 (82%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK T+ A
Sbjct:   235 AYLLVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYSGNKREKQTIHA 294

Query:   121 AFNKLV 126
              F KLV
Sbjct:   295 VFRKLV 300

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LJ79 LOC100620952 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 85/126 (67%), Positives = 104/126 (82%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   102 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 161

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK T+ A
Sbjct:   162 AYLLVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYSGNKREKQTIHA 221

Query:   121 AFNKLV 126
              F KLV
Sbjct:   222 VFRKLV 227

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E7EUE1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 86/126 (68%), Positives = 104/126 (82%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   199 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 258

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YLVVSG+ LT LRRP G+MT+TEQK EGE+RY+NSRLI+NSEEIAFY GN+REK TV +
Sbjct:   259 AYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHS 318

Query:   121 AFNKLV 126
              F KLV
Sbjct:   319 VFRKLV 324

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|J9P7K3 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/126 (66%), Positives = 105/126 (83%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q PT M+
Sbjct:   210 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPTSMM 269

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT LRRP G+MT+TEQK EGE+R++NSRLI+NSEEIAFY GN+REK T+ +
Sbjct:   270 AYLIVSGLFLTRLRRPIGKMTITEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHS 329

Query:   121 AFNKLV 126
              F KLV
Sbjct:   330 VFRKLV 335

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)]

 Score = 452 (164.2 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 83/126 (65%), Positives = 103/126 (81%)

Query:     1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
             M NLDNRIANPDQLLT D++KFC+   DLYSN+ KP LDIV+Y+++LTS +G Q P  M+
Sbjct:   175 MGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMM 234

Query:    61 GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
              YL+VSG+ LT LRRP G+MT+ EQK EGE+RY+NSRLI+NSEEIAFY GN+REK T+ +
Sbjct:   235 AYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHS 294

Query:   121 AFNKLV 126
              F KLV
Sbjct:   295 VFRKLV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005782 "peroxisomal matrix" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043621 "protein self-association" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16970	ABCD3_RAT	No assigned EC number	0.6507	0.9333	0.1911	yes	N/A
P55096	ABCD3_MOUSE	No assigned EC number	0.6535	0.9407	0.1927	yes	N/A
P28288	ABCD3_HUMAN	No assigned EC number	0.6771	0.9407	0.1927	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
pfam06472	282	pfam06472, ABC_membrane_2, ABC transporter transme	2e-55
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	5e-54
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	4e-16

>gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2

 Score =  174 bits (443), Expect = 2e-55
 Identities = 61/131 (46%), Positives = 91/131 (69%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           +SNLD RI NPDQ +T D++KFC   +DLYSN+ KP+LDI+++ + L    G+  P ++ 
Sbjct: 119 LSNLDGRIDNPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILF 178

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            Y+++S VIL  L  P G++   EQ+LEG+FRY++SRLI+N+EEIAFY+G +REK  +  
Sbjct: 179 LYVLLSTVILRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQR 238

Query: 121 AFNKLVSMSWK 131
            F  L+    +
Sbjct: 239 RFKSLIDHMRR 249

This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score =  179 bits (455), Expect = 5e-54
 Identities = 73/127 (57%), Positives = 99/127 (77%)

Query: 1   MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVML 60
           +SNLD+RI NPDQLLT D++KFCD   +LYSN+ KP+LD+++Y ++L + LG   P  + 
Sbjct: 187 VSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLF 246

Query: 61  GYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLA 120
            YL  +GV+LT LR P G++TV EQ LEGE+RY++SRLI NSEEIAFYQGN+ EK TV++
Sbjct: 247 AYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMS 306

Query: 121 AFNKLVS 127
           +F +LV 
Sbjct: 307 SFYRLVE 313

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 21/144 (14%)

Query: 5   DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPT------- 57
              I NPDQ +  D+  F +   DL   + + V+ ++ +   L S  G    T       
Sbjct: 144 IGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFG 203

Query: 58  -------VMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQG 110
                   ++ Y + + ++   + RP  R+    QKLE +FRY   R+  N+E IA Y+G
Sbjct: 204 IPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263

Query: 111 NQREK-------LTVLAAFNKLVS 127
            + E+         VL  + +LV 
Sbjct: 264 EKVERRRLDDRFDAVLGNWRRLVR 287

Length = 604

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF06472	281	ABC_membrane_2: ABC transporter transmembrane regi	100.0
KOG0060|consensus	659		100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
PRK12369	326	putative transporter; Reviewed	100.0
PRK11098	409	microcin B17 transporter; Reviewed	100.0
KOG0064|consensus	728		99.95
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.81
PF05992	315	SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009	99.77
COG1133	405	SbmA ABC-type long-chain fatty acid transport syst	99.63
PF00664	275	ABC_membrane: ABC transporter transmembrane region	98.33
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.21
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.16
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.02
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.65
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.64
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.6
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.52
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.51
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.5
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.48
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.46
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.44
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.36
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.24
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.08
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.99
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.37
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.34
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	96.31
PLN03232	1495	ABC transporter C family member; Provisional	96.15
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	95.66
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	95.17
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	95.09
PLN03130	1622	ABC transporter C family member; Provisional	95.04
KOG0058|consensus	716		94.73
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	93.77
PTZ00243	1560	ABC transporter; Provisional	92.15
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	92.1
PTZ00243	1560	ABC transporter; Provisional	91.53
KOG0055|consensus	1228		90.57
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	87.18
COG4987	573	CydC ABC-type transport system involved in cytochr	85.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	85.78
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	85.06

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=5.3e-47  Score=301.39  Aligned_cols=134  Identities=35%  Similarity=0.589  Sum_probs=130.0

Q ss_pred             CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhh
Q psy11402          1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRM   80 (135)
Q Consensus         1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l   80 (135)
                      +++.++++|||||||||||++||+.+++++.++++|++++++|+++||+.+|+.+++.+++|++++|++++++||||+++
T Consensus       118 l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l  197 (281)
T PF06472_consen  118 LNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRL  197 (281)
T ss_pred             hhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            35668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402         81 TVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ  134 (135)
Q Consensus        81 ~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~  134 (135)
                      ++++|++|||||+.|+|+|+||||||||+||+.|+++++++|+++++||+++++
T Consensus       198 ~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~  251 (281)
T PF06472_consen  198 NAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIR  251 (281)
T ss_pred             HHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane

>KOG0060|consensus

Probab=100.00  E-value=1e-39  Score=277.24  Aligned_cols=133  Identities=44%  Similarity=0.738  Sum_probs=130.3

Q ss_pred             CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhh
Q psy11402          1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRM   80 (135)
Q Consensus         1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l   80 (135)
                      ++++|.+||||||||++|+++||..+++|+..+++|++|+++|+++||+.+||.+|+.+++|+++++++.+.+++|++++
T Consensus       174 is~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l  253 (659)
T KOG0060|consen  174 LSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKL  253 (659)
T ss_pred             ecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402         81 TVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT  133 (135)
Q Consensus        81 ~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~  133 (135)
                      +++||++||||||.|+|+|.|||+||||+|+..|+..++++|+.+++|.+.++
T Consensus       254 ~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~  306 (659)
T KOG0060|consen  254 TVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELM  306 (659)
T ss_pred             HHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998865

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=2.1e-38  Score=272.19  Aligned_cols=129  Identities=26%  Similarity=0.410  Sum_probs=122.1

Q ss_pred             CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccC----------chh----HHHHHHHHHHHHHHH
Q psy11402          6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGY----------QTP----TVMLGYLVVSGVILT   71 (135)
Q Consensus         6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~----------~~~----~~~~~y~~~~t~~~~   71 (135)
                      +.+|||||||+||++.||+.+++|..+++++++++++|+.+||.++|.          .+|    +.+++|++++|++++
T Consensus       145 ~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~  224 (604)
T COG4178         145 GLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTH  224 (604)
T ss_pred             cCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999874          234    447889999999999


Q ss_pred             HhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402         72 HLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ  134 (135)
Q Consensus        72 ~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~  134 (135)
                      ++||||++||++++++||+||+.|+|+|+|||+||||+||+.||+.++++|..|++||++++.
T Consensus       225 ~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~  287 (604)
T COG4178         225 LIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR  287 (604)
T ss_pred             HHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999864

>PRK12369 putative transporter; Reviewed

Probab=100.00  E-value=2.1e-35  Score=239.79  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=115.5

Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc-----------hhHHHHHHHHHHHHHHHH
Q psy11402          4 LDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ-----------TPTVMLGYLVVSGVILTH   72 (135)
Q Consensus         4 ~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~-----------~~~~~~~y~~~~t~~~~~   72 (135)
                      .++.+|||||||+|||+.||+.+++|..+++++++++++|+.+||+.+|..           .++.+++|++++|+++++
T Consensus       109 ~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~  188 (326)
T PRK12369        109 KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWF  188 (326)
T ss_pred             CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999999999999988642           235579999999999999


Q ss_pred             hccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402         73 LRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ  134 (135)
Q Consensus        73 ~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~  134 (135)
                      +|+||+++++++|++|||||+.|+|+|||+|+   |    .|++.++++|.+|++||+++++
T Consensus       189 iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~  243 (326)
T PRK12369        189 VGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFL  243 (326)
T ss_pred             HcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999   4    8999999999999999999764

>PRK11098 microcin B17 transporter; Reviewed

Probab=100.00  E-value=7.1e-34  Score=236.26  Aligned_cols=121  Identities=12%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--------hh----HHHHHHHHHHHHHHHHh
Q psy11402          6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--------TP----TVMLGYLVVSGVILTHL   73 (135)
Q Consensus         6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--------~~----~~~~~y~~~~t~~~~~~   73 (135)
                      +++|||||||+|||+.||+.+.+|..+++++++++++|+.+||+.+|..        +|    +.+++|+++||++++++
T Consensus       185 r~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~v  264 (409)
T PRK11098        185 RHIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVV  264 (409)
T ss_pred             CCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999988752        34    35889999999999999


Q ss_pred             ccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhcc
Q psy11402         74 RRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGTQ  134 (135)
Q Consensus        74 g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~~  134 (135)
                      |+||+++++++|++|||||+.|+|+|||||        +.|+++++++|++|++||+++++
T Consensus       265 G~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~  317 (409)
T PRK11098        265 GIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYF  317 (409)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999        67999999999999999999874

>KOG0064|consensus

Probab=99.95  E-value=2.4e-27  Score=200.92  Aligned_cols=133  Identities=35%  Similarity=0.508  Sum_probs=117.5

Q ss_pred             CCCCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcc---CchhHHHHHHHHHHHHHHHHhccch
Q psy11402          1 MSNLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLG---YQTPTVMLGYLVVSGVILTHLRRPA   77 (135)
Q Consensus         1 ~~~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G---~~~~~~~~~y~~~~t~~~~~~g~~l   77 (135)
                      ++++|+.+.||||++||||..||++++.|++++.||++|++++++.|-...+   ..+.+.+.+-+.+++.+++.+.|||
T Consensus       209 Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~F  288 (728)
T KOG0064|consen  209 VSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKF  288 (728)
T ss_pred             EecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCch
Confidence            4678999999999999999999999999999999999999999999977654   3333444444445667899999999


Q ss_pred             hhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402         78 GRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT  133 (135)
Q Consensus        78 ~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~  133 (135)
                      ++|++++.+++|+||+.|+|+..|+||||||+|++.|.+.+++.|+.++.....+.
T Consensus       289 g~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~  344 (728)
T KOG0064|consen  289 GKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIF  344 (728)
T ss_pred             hhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998765543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.81  E-value=4.9e-19  Score=154.97  Aligned_cols=131  Identities=55%  Similarity=0.926  Sum_probs=124.3

Q ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhH
Q psy11402          3 NLDNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTV   82 (135)
Q Consensus         3 ~~~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~   82 (135)
                      +.|+..+|||||||+|++.+++...+++.++++++++++.++..||...+|..+..+++|+.+..++.++++||+.+++.
T Consensus       189 ~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~  268 (659)
T TIGR00954       189 NLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTV  268 (659)
T ss_pred             cCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHH
Confidence            45667899999999999999999999999999999999999999998889988888999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402         83 TEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT  133 (135)
Q Consensus        83 ~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~  133 (135)
                      ++++.||+||..|.+.++|+|+|++|+||+.|++++++.++++.++..+..
T Consensus       269 ~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~  319 (659)
T TIGR00954       269 EEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII  319 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887754

>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R

Probab=99.77  E-value=4.4e-18  Score=136.97  Aligned_cols=120  Identities=13%  Similarity=0.180  Sum_probs=107.8

Q ss_pred             CCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--h------h----HHHHHHHHHHHHHHHHh
Q psy11402          6 NRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--T------P----TVMLGYLVVSGVILTHL   73 (135)
Q Consensus         6 ~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--~------~----~~~~~y~~~~t~~~~~~   73 (135)
                      ..|+...|||+||+.+||+.+-+|...+++++++++.|..+||++++..  .      |    +.++++.++||+++..+
T Consensus       103 r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~v  182 (315)
T PF05992_consen  103 RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFV  182 (315)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999987642  1      1    44788999999999999


Q ss_pred             ccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhhc
Q psy11402         74 RRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKGT  133 (135)
Q Consensus        74 g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~~  133 (135)
                      |.+|.++.++.|+.||.||..|+.-.||.+        ..+...+.+.|.+|.+||+++.
T Consensus       183 GikLPgLe~~nQkvEAAyRKeLV~gED~~~--------ra~~~tl~eLF~~Vr~Ny~rly  234 (315)
T PF05992_consen  183 GIKLPGLEFNNQKVEAAYRKELVYGEDDAN--------RAQPPTLRELFSNVRRNYFRLY  234 (315)
T ss_pred             hccCcchhhhhHHHHHHHHHHHHhcCcccc--------cCCchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888865        3567789999999999999975

meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane

>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]

Probab=99.63  E-value=1.1e-15  Score=122.87  Aligned_cols=120  Identities=12%  Similarity=0.133  Sum_probs=108.5

Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCc--------h----hHHHHHHHHHHHHHHHH
Q psy11402          5 DNRIANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQ--------T----PTVMLGYLVVSGVILTH   72 (135)
Q Consensus         5 ~~~idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~--------~----~~~~~~y~~~~t~~~~~   72 (135)
                      ...|+...|||+||..+|+..+-+|..+++++++|++.|..+||+.+...        +    .+.++++.+.||+++..
T Consensus       180 lrhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~  259 (405)
T COG1133         180 LRHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAV  259 (405)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHh
Confidence            45688899999999999999999999999999999999999999875421        1    25578899999999999


Q ss_pred             hccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         73 LRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        73 ~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      +|-+|.+|.++.|+.||.||..|+--.||+|        .++...+.+.|+.|.+|+.|+
T Consensus       260 vGIKLPGLef~NQrvEAAyRKELVYgEDh~d--------rA~p~T~~ELf~nvr~NYfRL  311 (405)
T COG1133         260 VGIKLPGLEFRNQRVEAAYRKELVYGEDHAD--------RATPPTVRELFSNVRKNYFRL  311 (405)
T ss_pred             hhccCCCcccccHHHHHHHHhhhhccCCchh--------hcCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987        578889999999999999885

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.33  E-value=2.6e-05  Score=58.13  Aligned_cols=119  Identities=14%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|+++|++...+........++.+++.++.....++.. +|.....+++...+...+..+++++..+...+.++..+++-
T Consensus       102 ~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (275)
T PF00664_consen  102 SRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFI-SWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELN  180 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhhhccccc-ccccccccchhhhhhHhhhhhhccccccccccccccccccc
Confidence            58999999999888888888888887776665555433 55444555556666677778889999999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ......-++.+.|-.|+.|+.|.++.++..++..+...+.
T Consensus       181 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~  220 (275)
T PF00664_consen  181 SFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKY  220 (275)
T ss_dssp             HHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887776653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.21  E-value=2.3e-05  Score=67.29  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402          9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE   88 (135)
Q Consensus         9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E   88 (135)
                      .+.-+|++.|++.+.+........++.+++.++.+...++...++ ..+.+++.+++..++..++++++.+...+.++.+
T Consensus       111 g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~  189 (571)
T TIGR02203       111 GTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ-LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSM  189 (571)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345589999999999988888888888888888888877765433 2233444455556677788999999999999999


Q ss_pred             hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      +++...+....++.+.|-.+++++.+.++.++.++...+...+.
T Consensus       190 ~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (571)
T TIGR02203       190 GQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM  233 (571)
T ss_pred             HHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.16  E-value=3.4e-05  Score=68.51  Aligned_cols=123  Identities=7%  Similarity=0.018  Sum_probs=98.7

Q ss_pred             CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402          8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL   87 (135)
Q Consensus         8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~   87 (135)
                      ..+.-.|+++|++.+.+........++..++.++.+...++...+ .....+++...+..++..+++++..++..+.++.
T Consensus       257 ~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~-~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~  335 (711)
T TIGR00958       257 TGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP-RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEA  335 (711)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567999999999888887778888888777776666665432 2223344445555667778999999999999999


Q ss_pred             hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ++++........++.+.|-.+++|+.|.++..+..++..+...+
T Consensus       336 ~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~  379 (711)
T TIGR00958       336 VAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR  379 (711)
T ss_pred             HHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988776654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.02  E-value=8.4e-05  Score=63.98  Aligned_cols=120  Identities=10%  Similarity=0.009  Sum_probs=90.4

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402         12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      -.|+++|++...+.....+..++..++.++.+...++....+ ..+.+++...+..++..+.+++..+...+.++.++++
T Consensus       118 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (576)
T TIGR02204       118 VSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK-LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADA  196 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458889999987766666666666666666555554433322 2222333444445566678899999999999999999


Q ss_pred             HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ...+....++.+.|..++.++.+.+..++..++..+.+.+.
T Consensus       197 ~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (576)
T TIGR02204       197 GSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR  237 (576)
T ss_pred             HHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877776553

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.86  E-value=0.00031  Score=60.64  Aligned_cols=121  Identities=8%  Similarity=0.071  Sum_probs=97.2

Q ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402         11 PDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE   90 (135)
Q Consensus        11 PDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead   90 (135)
                      --+|++.|++...+........++..++.++.+...++...++ ..+.+++.+.+..++..+.++++.+...+.++..++
T Consensus       124 ~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  202 (582)
T PRK11176        124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ-LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQ  202 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999998888888888888888888887777655433 223333344455556667899999999999999999


Q ss_pred             HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      +...+....++.+.|-.++.++.+.++.++..+...+...+.
T Consensus       203 ~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (582)
T PRK11176        203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKM  244 (582)
T ss_pred             HHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887776553

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.65  E-value=0.00083  Score=58.24  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=88.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402          8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL   87 (135)
Q Consensus         8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~   87 (135)
                      ..+.-+|+++|++.+.......+..++..++..+.....++....+ ..+.+++..++..++..++.++..+...+.++.
T Consensus       112 ~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~  190 (588)
T PRK13657        112 SGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR-LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEH  190 (588)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445679999999887666666666666655554444444332221 222233333444456667788888888888889


Q ss_pred             hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      .+++...+....++.+.|..|+.++.+.++..+.++++.+...+
T Consensus       191 ~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~  234 (588)
T PRK13657        191 YHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP  234 (588)
T ss_pred             HHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988776544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.64  E-value=0.0011  Score=57.64  Aligned_cols=119  Identities=13%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH-HHHHhccchhhhhHHHHHhhhhH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGV-ILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~-~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      .|+++|++...+........++.++++++.....++....+.+ +.+++...+..+ +..+.++...+...+.++..+++
T Consensus       121 srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (574)
T PRK11160        121 NRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA-LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQY  199 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6899999999888877777777777776655555543321111 111111111122 22334555566777888999999


Q ss_pred             HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ...+.....+.+.|-.|+.|+.+.+++++..++..+...+.
T Consensus       200 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  240 (574)
T PRK11160        200 RVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ  240 (574)
T ss_pred             HHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988887766553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.60  E-value=0.0013  Score=56.97  Aligned_cols=124  Identities=8%  Similarity=0.018  Sum_probs=86.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHh
Q psy11402          8 IANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKL   87 (135)
Q Consensus         8 idNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~   87 (135)
                      ..+.-.|++.|++............++..++..+.+...++...+|...+.+++...+..++..++++++.+...+.++.
T Consensus        92 ~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~  171 (569)
T PRK10789         92 TGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAA  171 (569)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456799999999876655556666666555544444443233443333333444444455666788888888888888


Q ss_pred             hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      .+++-......-.+.+.|-.++.++.+.++.++...+..+...+
T Consensus       172 ~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  215 (569)
T PRK10789        172 FSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMR  215 (569)
T ss_pred             HHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999998888776655544

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.52  E-value=0.0018  Score=56.37  Aligned_cols=120  Identities=10%  Similarity=0.064  Sum_probs=85.7

Q ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402         11 PDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE   90 (135)
Q Consensus        11 PDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead   90 (135)
                      .=.|+++|++...+.....+..++..++.++.+...++... |...+.+++.+.+..++..++++++.+...+.++..++
T Consensus       115 ~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (585)
T TIGR01192       115 ALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD-WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHN  193 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34589999998887777777776766666665555554332 21222223333344445566788888888888888888


Q ss_pred             HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      +-......-++.+.|-.++.++.|.+++++..++..+...+
T Consensus       194 ~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~  234 (585)
T TIGR01192       194 VFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP  234 (585)
T ss_pred             HHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999999998887665444

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.51  E-value=0.0021  Score=54.98  Aligned_cols=121  Identities=4%  Similarity=0.028  Sum_probs=84.2

Q ss_pred             CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402         10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG   89 (135)
Q Consensus        10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea   89 (135)
                      +.-.|+++|++...+........++..++..+.+...++.. .|.....+++.+.+..++..+.++++.+...+.++.++
T Consensus       102 ~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  180 (529)
T TIGR02857       102 ELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPA-DWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALS  180 (529)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568899999887777666666666665555554444332 22222222222223334455678888888888899999


Q ss_pred             hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ++-..+...-++.+.|-.|+.|+.+.++.++..++..+...+
T Consensus       181 ~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  222 (529)
T TIGR02857       181 RLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMR  222 (529)
T ss_pred             HHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888777665443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.50  E-value=0.002  Score=55.02  Aligned_cols=122  Identities=14%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccch-hhhhHHHHHh
Q psy11402          9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPA-GRMTVTEQKL   87 (135)
Q Consensus         9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l-~~l~~~~q~~   87 (135)
                      .+--.|+++|++...+........++.+++.++.+...++...+..+ ..+++.+.+..++..+++.+. .+...+.++.
T Consensus       110 g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (529)
T TIGR02868       110 GDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA-LVLAAGLLLAGFVAPLVSLRAARAAEVALARL  188 (529)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34456999999999888887777777777777766666654432222 112222222223333444443 3455666778


Q ss_pred             hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         88 EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        88 EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ++++-.......++.+.|-.++.|+.+.++.++..++..+...+
T Consensus       189 ~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~  232 (529)
T TIGR02868       189 RSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR  232 (529)
T ss_pred             HHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988888777665444

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.48  E-value=0.0017  Score=57.47  Aligned_cols=118  Identities=14%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|+ .|++...+........++..++.++.+...++...++ ..+.+++.+.+..++..++++++.+...+..+.++++.
T Consensus       247 ~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (694)
T TIGR03375       247 NQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP-LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRN  324 (694)
T ss_pred             HHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466 6777777666655555555555566666566554433 22334444455556667789999999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ..+....++.+.|-.++.|+.+.++.++.+.+..+...+.
T Consensus       325 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  364 (694)
T TIGR03375       325 AVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKS  364 (694)
T ss_pred             HHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887666553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.46  E-value=0.0019  Score=57.24  Aligned_cols=116  Identities=14%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHH
Q psy11402         14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRY   93 (135)
Q Consensus        14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~   93 (135)
                      |++ |++...+........++..++.++.+...++...++ ..+.+++.+.+..++..++++++.++..+.++..+++..
T Consensus       258 r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (708)
T TIGR01193       258 RFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML-LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNS  335 (708)
T ss_pred             Hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            676 666666655555555555555555555555443322 223333444445556677889999999999999999999


Q ss_pred             HHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         94 INSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        94 ~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      .+....++.|.|-.+++|+.+.++.++.+.+..+...+
T Consensus       336 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  373 (708)
T TIGR01193       336 SIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK  373 (708)
T ss_pred             HHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887766554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.44  E-value=0.0023  Score=56.66  Aligned_cols=117  Identities=9%  Similarity=0.032  Sum_probs=87.1

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|+++| +...+...+....++..++.++.+...++...++. .+.+++...+..++..+++++..+...+.++.++++.
T Consensus       255 ~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (710)
T TIGR03796       255 SRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL-TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLT  332 (710)
T ss_pred             HHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467766 45555555555666666666666666666554332 2334444455556677789999999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ..+....++.+.|-.++.|+.+.++..+.+.+..+...+
T Consensus       333 ~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  371 (710)
T TIGR03796       333 GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE  371 (710)
T ss_pred             HHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888887766544

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.36  E-value=0.0035  Score=54.29  Aligned_cols=119  Identities=8%  Similarity=0.120  Sum_probs=83.8

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402         12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      -+|++.|++...+........++..++..+.....++... |.....+++.+.+..++..+++++..+...+.++..+++
T Consensus       123 ~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (588)
T PRK11174        123 ATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN-WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARL  201 (588)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999887777666666666665555544443322 211122222233334455567888888888888888999


Q ss_pred             HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      -.......++.+.|-.++.|+.+.++.++..++..+...+
T Consensus       202 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  241 (588)
T PRK11174        202 SGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME  241 (588)
T ss_pred             HHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999998888887766544

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.24  E-value=0.0058  Score=54.14  Aligned_cols=117  Identities=10%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      +|+ .|++...+........++..++..+.+...++...++ ..+.+++.+++..++..++++++.+...+..+..+++.
T Consensus       240 ~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  317 (694)
T TIGR01846       240 ARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT-LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAAT  317 (694)
T ss_pred             HHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467 5777776665555555454444444455455444322 22333333444455666788888888889999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ..+....++.|.|-.++.|+.+.++.++.+.+..+...+
T Consensus       318 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  356 (694)
T TIGR01846       318 SFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR  356 (694)
T ss_pred             HHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887766554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.08  E-value=0.0097  Score=52.64  Aligned_cols=118  Identities=8%  Similarity=0.002  Sum_probs=79.8

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++ |++...+...+....++..++..+.+...++...++.+ +.+++...+..++..++++++.+...+.++.++++.
T Consensus       237 ~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (686)
T TIGR03797       237 SRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLA-LVAVALALVAIAVTLVLGLLQVRKERRLLELSGKIS  314 (686)
T ss_pred             HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4665 55555544444333333333334444455554433222 222233333444666788889999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      .......++.|.|-.++.|+.+.++.++.+.+..+...+.
T Consensus       315 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  354 (686)
T TIGR03797       315 GLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSA  354 (686)
T ss_pred             HHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887766653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.99  E-value=0.014  Score=50.68  Aligned_cols=120  Identities=10%  Similarity=0.004  Sum_probs=81.9

Q ss_pred             CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402         10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG   89 (135)
Q Consensus        10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea   89 (135)
                      +--+|+++|++...+........++.+++.++.+...++....+.+ +.+++...+..++..+.++...+...+.++..+
T Consensus       123 ~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  201 (592)
T PRK10790        123 QLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA-LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLA  201 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446899999999888888777777777777666655554322222 222222222223334455555666666677788


Q ss_pred             hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402         90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW  130 (135)
Q Consensus        90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~  130 (135)
                      ++........++.+.|--+++++...++..+...+..+...
T Consensus       202 ~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~  242 (592)
T PRK10790        202 DINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARM  242 (592)
T ss_pred             HHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999888888887776665543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.37  E-value=0.08  Score=45.61  Aligned_cols=118  Identities=11%  Similarity=-0.066  Sum_probs=77.3

Q ss_pred             cchHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhh
Q psy11402         12 DQLLTADLDKFCDMFTD-LYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGE   90 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~-l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ead   90 (135)
                      .-+++.|++...+.... ....++..++.++. ...++...++.+...+.+ +.+..++..+.++...+...+.++..++
T Consensus       101 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~-~~l~~~i~~~~~~~~~~~~~~~~~~~~~  178 (544)
T TIGR01842       101 GLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGG-AVVLVGLALLNNRATKKPLKEATEASIR  178 (544)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45788999988776655 34445555554433 334443332222111111 1222233344566666677777888888


Q ss_pred             HHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         91 FRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        91 fR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      +...+...-++.+.|-.++.|+.+.++.++.+++..+...+
T Consensus       179 ~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  219 (544)
T TIGR01842       179 ANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSA  219 (544)
T ss_pred             HhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999999998887776654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.34  E-value=0.079  Score=45.73  Aligned_cols=97  Identities=12%  Similarity=0.009  Sum_probs=63.1

Q ss_pred             CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402          9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE   88 (135)
Q Consensus         9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E   88 (135)
                      .+-=.|++.|++........ ...++..++.++.+...++... |...+.+++.+.+..++..++++++.+...+.++..
T Consensus       105 g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  182 (547)
T PRK10522        105 ASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLS-PKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETE  182 (547)
T ss_pred             cchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445899999988765443 3455666666666655554432 222233333333444456677888888888888888


Q ss_pred             hhHHHHHHhhhhhcchhhc
Q psy11402         89 GEFRYINSRLISNSEEIAF  107 (135)
Q Consensus        89 adfR~~l~rlr~naE~IAf  107 (135)
                      +++-......-++.+.+++
T Consensus       183 ~~~~~~~~e~l~g~~~i~~  201 (547)
T PRK10522        183 DKLYNDYQTVLEGRKELTL  201 (547)
T ss_pred             HHHHHHHHHHHhhhHhhhc
Confidence            8888888888888888864

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=96.31  E-value=0.074  Score=46.07  Aligned_cols=114  Identities=10%  Similarity=0.066  Sum_probs=66.1

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402         12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      =.|+++|++...+.... ...++..++.++.....++.. .|...+.+++...+..++..+..++..+...+.++.++++
T Consensus       113 ~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (555)
T TIGR01194       113 IPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL-SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAF  190 (555)
T ss_pred             hHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            35899999988776554 444555555444333333322 2222233333333444444555666666777777788888


Q ss_pred             HHHHHhhhhhcchhhcccCcH--HHHHHHHHHHHHHHH
Q psy11402         92 RYINSRLISNSEEIAFYQGNQ--REKLTVLAAFNKLVS  127 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~--~E~~~l~~~f~~l~~  127 (135)
                      .......-++.+.|-.++.++  .+.++.++...+..+
T Consensus       191 ~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~  228 (555)
T TIGR01194       191 NEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIAD  228 (555)
T ss_pred             HHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHH
Confidence            777777777888887777733  344555555444443

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03232 ABC transporter C family member; Provisional

Probab=96.15  E-value=0.095  Score=50.68  Aligned_cols=116  Identities=13%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++.+.+.. .....+...++.++...+.||...|+.....+.+ +++...+..++++.+.+...+.++..++.=
T Consensus       402 n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v-~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~  479 (1495)
T PLN03232        402 NMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLI-LFLLIPLQTLIVRKMRKLTKEGLQWTDKRV  479 (1495)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999998775 4556666777777777777887666532211111 112222344566667777766666666644


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW  130 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~  130 (135)
                      ......-++.+.|-+|+.|+...+++++..++-.+..+
T Consensus       480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~  517 (1495)
T PLN03232        480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFR  517 (1495)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            55558889999999999999998888776665554433

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=95.66  E-value=0.18  Score=48.93  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402         12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      =.+++.|++++.+.. .....+...++.++...+.||...|+... ..++.+++...+..++++.+.++..+..+.....
T Consensus       418 ~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r  495 (1522)
T TIGR00957       418 VNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVL-AGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNR  495 (1522)
T ss_pred             HHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358899999988744 56777778888888888889988776421 1122222333344456666666666666655555


Q ss_pred             HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHH
Q psy11402         92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVS  127 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~  127 (135)
                      =.......++.+.|=+|+.|+.-.+++.+..+.-.+
T Consensus       496 ~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~  531 (1522)
T TIGR00957       496 IKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELK  531 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            566678889999999999988877777665555433

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=95.17  E-value=0.45  Score=46.15  Aligned_cols=114  Identities=6%  Similarity=-0.115  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHH
Q psy11402         14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRY   93 (135)
Q Consensus        14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~   93 (135)
                      |++.|+....+....-+..++..++.++.....++. ..|...+.+++.+.+..++..++++.+.+...+.++..+++=.
T Consensus       159 ~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1466)
T PTZ00265        159 DLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMS  237 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555565555554455555555444333322221 2232223333333333444555677776677777777788888


Q ss_pred             HHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402         94 INSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM  128 (135)
Q Consensus        94 ~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~  128 (135)
                      .......+.+.|.-|++|+.+.++.++......+.
T Consensus       238 ~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~  272 (1466)
T PTZ00265        238 IIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKY  272 (1466)
T ss_pred             HHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999888766655443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=95.09  E-value=0.37  Score=46.71  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      -+++.|++++.+....+ ..+...++.++.+.+.||...|+.... .++.+++...+..++++.+.++..+..+....-=
T Consensus       183 nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~  260 (1490)
T TIGR01271       183 SLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFC-GLGFLILLALFQACLGQKMMPYRDKRAGKISERL  260 (1490)
T ss_pred             HHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999876644 556677888888999999998875422 2222333344555666666666655555544444


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNK  124 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~  124 (135)
                      .....+..+.+.|=+|+-|+...+++.+.-+.
T Consensus       261 ~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~  292 (1490)
T TIGR01271       261 AITSEIIENIQSVKAYCWEEAMEKIIKNIRQD  292 (1490)
T ss_pred             HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            55677888888899998888877666654443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=95.04  E-value=0.42  Score=46.77  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .+++.|++++.+... ....+...++.++...+.||...|+.....+ +.+++...+..++++.+.++..+..+..++.=
T Consensus       402 nl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~-~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~  479 (1622)
T PLN03130        402 NLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGS-LMLVLMFPIQTFIISKMQKLTKEGLQRTDKRI  479 (1622)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999988764 4566667777777777777776665321111 11222223334456666666666666655555


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNK  124 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~  124 (135)
                      .......++.+.|=+|+.|+...+++.+.-++
T Consensus       480 ~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~  511 (1622)
T PLN03130        480 GLMNEVLAAMDTVKCYAWENSFQSKVQTVRDD  511 (1622)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            56668889999999999998887777665444

>KOG0058|consensus

Probab=94.73  E-value=0.56  Score=42.34  Aligned_cols=119  Identities=10%  Similarity=0.069  Sum_probs=76.6

Q ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhH
Q psy11402         12 DQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEF   91 (135)
Q Consensus        12 DQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Eadf   91 (135)
                      =-|+|.|+..+++++.......+.+.+.++--...+... .|......++-+-+..++.+..|+-+.++..+.|..=|+-
T Consensus       248 ~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~-S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a  326 (716)
T KOG0058|consen  248 ISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL-SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARA  326 (716)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            349999999999999999888888888776444333222 1222233333344445567778888888888887765543


Q ss_pred             HHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         92 RYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        92 R~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      =-.-.-.-.+---|--+.+|+.|.++-.+..+++.+-..+
T Consensus       327 ~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k  366 (716)
T KOG0058|consen  327 NQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK  366 (716)
T ss_pred             HHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3222222222233667788899988888777776655433

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=93.77  E-value=1.7  Score=37.65  Aligned_cols=119  Identities=16%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             CccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402         10 NPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEG   89 (135)
Q Consensus        10 NPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~Ea   89 (135)
                      +.=.|++.|++............+..+++.++.....++.. +|.....+++-..+..++..+++++..+.....++..+
T Consensus       110 ~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (567)
T COG1132         110 DLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL-SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG  188 (567)
T ss_pred             hHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44468999999888777766444444555555444444332 22222222222333444555566566677777777778


Q ss_pred             hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHH
Q psy11402         90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMS  129 (135)
Q Consensus        90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~  129 (135)
                      ++-......-.+-+.|-.++.++.|.+..++..+...+..
T Consensus       189 ~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~  228 (567)
T COG1132         189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN  228 (567)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888889999988777777766655553

>PTZ00243 ABC transporter; Provisional

Probab=92.15  E-value=2.3  Score=41.66  Aligned_cols=107  Identities=7%  Similarity=0.072  Sum_probs=68.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      -.++.|++++.+.... ...+...++.++...+.||...||.....+ +-+++...+..++++...+...+..+....--
T Consensus       348 nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv-~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri  425 (1560)
T PTZ00243        348 NMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAV-AVLLVTLPLNGAIMKHQMAARRKIAKAADARV  425 (1560)
T ss_pred             HHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999888754 456778888888889999999888542221 11222333445556655555544444433333


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAA  121 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~  121 (135)
                      .....+..+.+.|=+++.|+.-.+++.+.
T Consensus       426 ~~~~E~l~gIr~IK~~~wE~~f~~ri~~~  454 (1560)
T PTZ00243        426 KATNEFFSGIRIAKFMAWEPCFVANIEDK  454 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777888888877766666553

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=92.10  E-value=3  Score=40.69  Aligned_cols=115  Identities=10%  Similarity=0.016  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|+++|++..-+.+......++..++.++.+...++...++.... ++...++...+..+..+...++........+..-
T Consensus       986 nRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~-~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~ 1064 (1490)
T TIGR01271       986 NRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA-AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIF 1064 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            488999999888777777777777777766665554433221111 1111111111112222222222222222233344


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM  128 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~  128 (135)
                      .......++.+.|--|+.++...++..+..+...+.
T Consensus      1065 ~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~ 1100 (1490)
T TIGR01271      1065 SHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100 (1490)
T ss_pred             HHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            555566778888989999988888888877754433

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=91.53  E-value=3.6  Score=40.34  Aligned_cols=113  Identities=12%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHH----hh
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQK----LE   88 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~----~E   88 (135)
                      .|++.|++..-+.+..-+..++..++.++.....++..    .|+.+++.. ...++...+...+.+...+.++    ..
T Consensus      1059 nR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~----~p~~~~~~i-~~~~~~~~i~~~~~~~~r~~~r~~~~~~ 1133 (1560)
T PTZ00243       1059 NRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS----QPFVLVALV-PCGYLYYRLMQFYNSANREIRRIKSVAK 1133 (1560)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            37789999888777766666666666665554443322    122211111 1111222233333333333333    33


Q ss_pred             hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402         89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW  130 (135)
Q Consensus        89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~  130 (135)
                      +..=.......++.+.|--|+.++.+.+...+.++...+.+.
T Consensus      1134 s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243       1134 SPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred             cHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            444455566677888899999999888888777776665443

>KOG0055|consensus

Probab=90.57  E-value=3.7  Score=39.37  Aligned_cols=119  Identities=16%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             CCccchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhh
Q psy11402          9 ANPDQLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLE   88 (135)
Q Consensus         9 dNPDQRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~E   88 (135)
                      -+--.|+++|+++.-+.+.+=...+++-+.+.+.=. ++.-..+|....+++.+..+-++.....++-+.+++.+++..=
T Consensus       128 g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~-ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~y  206 (1228)
T KOG0055|consen  128 GELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGF-VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAY  206 (1228)
T ss_pred             cceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788887777666665444444444433211 1111123433344444444444444445555566676666655


Q ss_pred             hhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402         89 GEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM  128 (135)
Q Consensus        89 adfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~  128 (135)
                      ++==...-....+.--+..++||+.|.++-.+.+..-.+.
T Consensus       207 a~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~  246 (1228)
T KOG0055|consen  207 AKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF  246 (1228)
T ss_pred             HHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence            4433444555666667889999999999888887765544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=87.18  E-value=11  Score=37.01  Aligned_cols=112  Identities=7%  Similarity=0.014  Sum_probs=53.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHH---HHHHHHHHHHhccchhhhhHHHHHhhh
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGY---LVVSGVILTHLRRPAGRMTVTEQKLEG   89 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y---~~~~t~~~~~~g~~l~~l~~~~q~~Ea   89 (135)
                      .|++.|++..-+.+......++..++.++.....++..    .|+.++..   .++..++.++..+...++....+...+
T Consensus      1066 nR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s 1141 (1522)
T TIGR00957      1066 NRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLA----TPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRS 1141 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            48899998887777666666666666665444433222    12211111   111112222222322222222222223


Q ss_pred             hHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402         90 EFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM  128 (135)
Q Consensus        90 dfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~  128 (135)
                      .+=.......++.+.|--|+.++...+...+..+...+.
T Consensus      1142 ~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1180 (1522)
T TIGR00957      1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKA 1180 (1522)
T ss_pred             HHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            333334445566666666776666555555555444433

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=85.93  E-value=16  Score=32.35  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHH---HHHHHHHHHHHHHH----hccchhhhhHHHHH
Q psy11402         14 LLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTV---MLGYLVVSGVILTH----LRRPAGRMTVTEQK   86 (135)
Q Consensus        14 RIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~---~~~y~~~~t~~~~~----~g~~l~~l~~~~q~   86 (135)
                      |+.+||+.+    -+++..++.|++..+.-.....--.|+..+..   +.++..+..+++-+    .|+|   .+....+
T Consensus       120 RLvaDVd~L----d~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~---~~~~l~~  192 (573)
T COG4987         120 RLVADVDAL----DNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRK---FGAHLAQ  192 (573)
T ss_pred             HHHhhHHHH----hhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHH
Confidence            899998765    66777777777665433222211122222211   22233333333323    3444   4455677


Q ss_pred             hhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         87 LEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        87 ~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ..+.||.-......---+--+++.++.-+..+.+.=....+..++
T Consensus       193 ~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k  237 (573)
T COG4987         193 GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRK  237 (573)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence            778888777766666666666777677666666655554444433

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=85.78  E-value=18  Score=35.56  Aligned_cols=115  Identities=6%  Similarity=-0.085  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhH-HHHHh----
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTV-TEQKL----   87 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~-~~q~~----   87 (135)
                      .|++.|++...+........++..++.++.....++.. +|...+.+   ..+..+++..+++....... +.++.    
T Consensus       929 srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~-~~~l~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1466)
T PTZ00265        929 AHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF-CPIVAAVL---TGTYFIFMRVFAIRARLTANKDVEKKEINQ 1004 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            58899999888777766666666666655544333221 12111111   11112222333332221111 11111    


Q ss_pred             -------------hhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         88 -------------EGEFRYINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        88 -------------EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                                   .++.=........+-+.|.-|+.|+.+.++..+..+...+...+
T Consensus      1005 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~ 1061 (1466)
T PTZ00265       1005 PGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKR 1061 (1466)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence                         22333344555678888899999999998888887766554443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=85.06  E-value=20  Score=32.57  Aligned_cols=88  Identities=13%  Similarity=0.039  Sum_probs=65.4

Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHHHHHHhhhhhcchhhcccCcHHHHHHHHHH
Q psy11402         42 IYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFRYINSRLISNSEEIAFYQGNQREKLTVLAA  121 (135)
Q Consensus        42 ~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR~~l~rlr~naE~IAf~~Ge~~E~~~l~~~  121 (135)
                      .|..++|-.+++ ..+.+++-+.+-.++..++.|++.+.+.++-...|+==..++....+.|.|=-.+.|+.=+...+++
T Consensus       283 i~l~vm~~ys~~-L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~  361 (709)
T COG2274         283 IFLAVMFLYSWK-LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR  361 (709)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHH
Confidence            344455544332 2344555555556677778999999999999999988888999999999998888888888888888


Q ss_pred             HHHHHHHHH
Q psy11402        122 FNKLVSMSW  130 (135)
Q Consensus       122 f~~l~~~~~  130 (135)
                      |.+.++-..
T Consensus       362 ~~~~~~~~~  370 (709)
T COG2274         362 LAKQVNIGF  370 (709)
T ss_pred             HHHHHHHhh
Confidence            887665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.6
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.57
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.37
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.33
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.33
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.29
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.69
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.4
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.65

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.60  E-value=0.0011  Score=56.36  Aligned_cols=118  Identities=10%  Similarity=0.131  Sum_probs=91.0

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++...+........++..++.++.....++... |...+.+++.+.+..++..+++++..+...+.++..+++-
T Consensus       126 ~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (582)
T 3b60_A          126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT  204 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999888777777788888888877777776543 3333333444444445666788888888888888888888


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+.+.|-.|+.|+.+.++..+..++..+...+
T Consensus       205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~  243 (582)
T 3b60_A          205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK  243 (582)
T ss_dssp             HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999988888877766554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.57  E-value=0.001  Score=56.42  Aligned_cols=118  Identities=12%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++...+........++..++.++.....++.. .|...+.+++.+.+..++..+++++..+...+.++..+++-
T Consensus       126 ~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (582)
T 3b5x_A          126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN-SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT  204 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999988877777777788777777766666543 23222333333344444566678888888888888888888


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+.+.|-.++.|+.+.++.++..++..+...+
T Consensus       205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~  243 (582)
T 3b5x_A          205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK  243 (582)
T ss_pred             HHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999998888887766554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.33  E-value=0.0015  Score=55.46  Aligned_cols=118  Identities=10%  Similarity=-0.007  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      +|++.|++...+........++..++.++.....++...++.+ +.+++.+.+..++..+++++..+...+.++..++..
T Consensus       122 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~-l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (578)
T 4a82_A          122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT-LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ  200 (578)
T ss_dssp             HHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH-HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999998888777777777777777777666665544332 223333333445556678888888888888899998


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+.+.|-.|+.|+.+.++.++..++..+...+
T Consensus       201 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  239 (578)
T 4a82_A          201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK  239 (578)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999988888777665544

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.33  E-value=0.0019  Score=55.06  Aligned_cols=118  Identities=13%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      +|++.|++...+........++..++.++.....++...++ ..+.+++.+.+..++..+++++..+...+.++..++..
T Consensus       138 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (598)
T 3qf4_B          138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI-LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLN  216 (598)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999988888777777777777777776666544322 22223333344445666778888888888888888888


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+.+.|-.|+.|+.+.++.++..++..+...+
T Consensus       217 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~  255 (598)
T 3qf4_B          217 GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK  255 (598)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999988888877665544

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.29  E-value=0.0046  Score=52.62  Aligned_cols=118  Identities=12%  Similarity=0.066  Sum_probs=85.5

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++.+.+........++.+++.++.....++... |.....+++.+.+..++..+++++..+...+.++..++.-
T Consensus       124 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (587)
T 3qf4_A          124 TRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSIN-VKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVN  202 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHC-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999988888777777777776665554444333 3333333333444445556677777888888888888888


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+.+.|-.|+.|+.+.++..+..++..+...+
T Consensus       203 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~  241 (587)
T 3qf4_A          203 RVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS  241 (587)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999999888887776655443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.62  E-value=0.011  Score=54.74  Aligned_cols=117  Identities=11%  Similarity=0.042  Sum_probs=84.1

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++...+........++..+++++.....++.. +|...+.+++.+.+..++..++++...+...+.++..++.-
T Consensus       197 sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~-~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (1321)
T 4f4c_A          197 TKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH-SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG  275 (1321)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999988777766677777777766555554432 23332333334444455666778888888888888888877


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW  130 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~  130 (135)
                      ........+-..|-.|+.|+.|.++..+..++..+...
T Consensus       276 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~  313 (1321)
T 4f4c_A          276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGV  313 (1321)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77778888889999999999999888877776665443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.69  E-value=0.065  Score=49.59  Aligned_cols=118  Identities=13%  Similarity=0.094  Sum_probs=80.8

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++..-+.+......++..+++++.....++. ..|...+.+++.+.+..++..++++...+...++++..++.-
T Consensus       169 sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1284)
T 3g5u_A          169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG  247 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999998888877777777777776655544433 345444444444444455556677777777777777666665


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWK  131 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~  131 (135)
                      ........+...|-.|+.|+.+.++.++..++..+...+
T Consensus       248 ~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~  286 (1284)
T 3g5u_A          248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK  286 (1284)
T ss_dssp             HTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            555555556677788999999999888888777665444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.40  E-value=0.26  Score=45.73  Aligned_cols=117  Identities=10%  Similarity=0.021  Sum_probs=71.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|++..-+.+...+..++..++.++.....++. .+|..++.+++.+.+..++..+.++.+.+...+.++..++.-
T Consensus       857 ~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~-~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  935 (1321)
T 4f4c_A          857 TRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF-YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSG  935 (1321)
T ss_dssp             HHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778888877665555555666666665544443332 233333333333333344455567777666666655555554


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSW  130 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~  130 (135)
                      ........+...|.-|+.|+.+.++..+..+...+...
T Consensus       936 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~  973 (1321)
T 4f4c_A          936 KIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI  973 (1321)
T ss_dssp             HHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            44556677888889999999988888887776555443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.65  E-value=2.6  Score=38.97  Aligned_cols=115  Identities=10%  Similarity=0.024  Sum_probs=67.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|++.|+...-.........++..++.++.....++ ..+|..++.+++.+.+..++.....+.+.+...+.++.-+..-
T Consensus       812 ~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  890 (1284)
T 3g5u_A          812 TRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL-IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG  890 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578889888777766666666666666655444433 3455444443333333333333344444444444443333333


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHH
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSM  128 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~  128 (135)
                      .......++.+.|.-++.|+.+.+...+..+...++
T Consensus       891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~  926 (1284)
T 3g5u_A          891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN  926 (1284)
T ss_dssp             HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            345666778888888999888888877776655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	98.2
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	98.02

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.20  E-value=2.1e-05  Score=57.24  Aligned_cols=119  Identities=10%  Similarity=0.120  Sum_probs=99.6

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      +|++.|++...+........++..++.++.....++... |.....+++...+...+..+.+++..+...+.++.++++-
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
T d3b60a2         117 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT  195 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhhhhhHHHHHHhhh-ccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence            588999999999888888888888887776666665443 3444566666777777888899999999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ........+.+.|-.++.|+.|.++.++..++..+...+.
T Consensus       196 ~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  235 (319)
T d3b60a2         196 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM  235 (319)
T ss_dssp             HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999887766653

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.02  E-value=2.4e-05  Score=57.13  Aligned_cols=119  Identities=9%  Similarity=-0.001  Sum_probs=97.7

Q ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHhccchhhhhHHHHHhhhhHH
Q psy11402         13 QLLTADLDKFCDMFTDLYSNICKPVLDIVIYVYRLTSTLGYQTPTVMLGYLVVSGVILTHLRRPAGRMTVTEQKLEGEFR   92 (135)
Q Consensus        13 QRIteDi~~f~~~~~~l~~~~~~~~~~li~f~~~L~~~~G~~~~~~~~~y~~~~t~~~~~~g~~l~~l~~~~q~~EadfR   92 (135)
                      .|+++|++...+........++..++.++.....++... |.....+++...+..++..+.+++..+...+.++.++++-
T Consensus       122 ~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (323)
T d2hyda2         122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD-VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ  200 (323)
T ss_dssp             HHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHH
Confidence            589999999988888888888888888777777666553 3333444555556666777889999999999999999999


Q ss_pred             HHHHhhhhhcchhhcccCcHHHHHHHHHHHHHHHHHHHhh
Q psy11402         93 YINSRLISNSEEIAFYQGNQREKLTVLAAFNKLVSMSWKG  132 (135)
Q Consensus        93 ~~l~rlr~naE~IAf~~Ge~~E~~~l~~~f~~l~~~~~~~  132 (135)
                      ..+....++.+.|-.++.|+.|.++.++..++..+...+.
T Consensus       201 ~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~  240 (323)
T d2hyda2         201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH  240 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHH
Confidence            9999999999999999999999999999999888777664